Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21758.t1 | P30077.1 | 100 | 389 | 0 | 0 | 1 | 389 | 1 | 389 | 6.00E-223 | 783.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21758.t1 | P30077 | 100.0 | 389 | 0 | 0 | 1 | 389 | 1 | 389 | 1.4e-225 | 783.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21758.t1 | A0A072UNH2 | 99.2 | 389 | 3 | 0 | 1 | 389 | 1 | 389 | 1.1e-221 | 778.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049611 | MS.gene21758 | 0.804626 | 1.97E-49 | -1.69E-46 |
| MS.gene050380 | MS.gene21758 | 0.841985 | 3.41E-58 | -1.69E-46 |
| MS.gene050381 | MS.gene21758 | 0.838504 | 2.76E-57 | -1.69E-46 |
| MS.gene051127 | MS.gene21758 | 0.806902 | 6.56E-50 | -1.69E-46 |
| MS.gene053406 | MS.gene21758 | 0.804402 | 2.20E-49 | -1.69E-46 |
| MS.gene053420 | MS.gene21758 | 0.816743 | 4.72E-52 | -1.69E-46 |
| MS.gene053561 | MS.gene21758 | 0.805198 | 1.50E-49 | -1.69E-46 |
| MS.gene055124 | MS.gene21758 | 0.870087 | 1.90E-66 | -1.69E-46 |
| MS.gene055154 | MS.gene21758 | 0.828297 | 9.72E-55 | -1.69E-46 |
| MS.gene055202 | MS.gene21758 | 0.822417 | 2.40E-53 | -1.69E-46 |
| MS.gene055959 | MS.gene21758 | 0.879888 | 8.62E-70 | -1.69E-46 |
| MS.gene056313 | MS.gene21758 | 0.826659 | 2.40E-54 | -1.69E-46 |
| MS.gene057550 | MS.gene21758 | 0.80973 | 1.64E-50 | -1.69E-46 |
| MS.gene058093 | MS.gene21758 | 0.868352 | 6.96E-66 | -1.69E-46 |
| MS.gene058099 | MS.gene21758 | 0.847237 | 1.31E-59 | -1.69E-46 |
| MS.gene058108 | MS.gene21758 | 0.876118 | 1.80E-68 | -1.69E-46 |
| MS.gene058109 | MS.gene21758 | 0.906404 | 1.54E-80 | -1.69E-46 |
| MS.gene058171 | MS.gene21758 | 0.843115 | 1.71E-58 | -1.69E-46 |
| MS.gene058173 | MS.gene21758 | 0.839439 | 1.58E-57 | -1.69E-46 |
| MS.gene058175 | MS.gene21758 | 0.843517 | 1.33E-58 | -1.69E-46 |
| MS.gene058176 | MS.gene21758 | 0.810696 | 1.01E-50 | -1.69E-46 |
| MS.gene058179 | MS.gene21758 | 0.845004 | 5.32E-59 | -1.69E-46 |
| MS.gene058180 | MS.gene21758 | 0.852301 | 5.05E-61 | -1.69E-46 |
| MS.gene058840 | MS.gene21758 | 0.826032 | 3.39E-54 | -1.69E-46 |
| MS.gene059037 | MS.gene21758 | 0.881924 | 1.60E-70 | -1.69E-46 |
| MS.gene059038 | MS.gene21758 | 0.857137 | 2.00E-62 | -1.69E-46 |
| MS.gene059044 | MS.gene21758 | 0.800982 | 1.12E-48 | -1.69E-46 |
| MS.gene059045 | MS.gene21758 | 0.843234 | 1.59E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21758.t1 | MTR_5g007713 | 99.229 | 389 | 3 | 0 | 1 | 389 | 1 | 389 | 0.0 | 803 |
| MS.gene21758.t1 | MTR_5g007717 | 98.458 | 389 | 6 | 0 | 1 | 389 | 1 | 389 | 0.0 | 800 |
| MS.gene21758.t1 | MTR_1g098140 | 96.915 | 389 | 12 | 0 | 1 | 389 | 1 | 389 | 0.0 | 785 |
| MS.gene21758.t1 | MTR_1g097935 | 96.658 | 389 | 13 | 0 | 1 | 389 | 1 | 389 | 0.0 | 782 |
| MS.gene21758.t1 | MTR_7g016820 | 96.401 | 389 | 14 | 0 | 1 | 389 | 1 | 389 | 0.0 | 781 |
| MS.gene21758.t1 | MTR_1g097910 | 96.401 | 389 | 14 | 0 | 1 | 389 | 1 | 389 | 0.0 | 781 |
| MS.gene21758.t1 | MTR_5g007730 | 95.887 | 389 | 16 | 0 | 1 | 389 | 1 | 389 | 0.0 | 780 |
| MS.gene21758.t1 | MTR_7g016800 | 96.144 | 389 | 15 | 0 | 1 | 389 | 1 | 389 | 0.0 | 780 |
| MS.gene21758.t1 | MTR_7g016700 | 96.144 | 389 | 15 | 0 | 1 | 389 | 1 | 389 | 0.0 | 778 |
| MS.gene21758.t1 | MTR_7g016720 | 96.144 | 389 | 15 | 0 | 1 | 389 | 1 | 389 | 0.0 | 777 |
| MS.gene21758.t1 | MTR_5g007760 | 95.887 | 389 | 16 | 0 | 1 | 389 | 1 | 389 | 0.0 | 775 |
| MS.gene21758.t1 | MTR_7g016780 | 95.630 | 389 | 17 | 0 | 1 | 389 | 1 | 389 | 0.0 | 775 |
| MS.gene21758.t1 | MTR_3g083920 | 91.237 | 388 | 34 | 0 | 1 | 388 | 1 | 388 | 0.0 | 753 |
| MS.gene21758.t1 | MTR_3g083910 | 89.948 | 388 | 39 | 0 | 1 | 388 | 1 | 388 | 0.0 | 748 |
| MS.gene21758.t1 | MTR_2g058470 | 87.404 | 389 | 49 | 0 | 1 | 389 | 1 | 389 | 0.0 | 719 |
| MS.gene21758.t1 | MTR_3g086260 | 82.732 | 388 | 67 | 0 | 1 | 388 | 1 | 388 | 0.0 | 690 |
| MS.gene21758.t1 | MTR_7g084300 | 79.949 | 389 | 78 | 0 | 1 | 389 | 1 | 389 | 0.0 | 673 |
| MS.gene21758.t1 | MTR_7g113405 | 95.380 | 303 | 14 | 0 | 87 | 389 | 1 | 303 | 0.0 | 596 |
| MS.gene21758.t1 | MTR_3g088675 | 66.324 | 389 | 131 | 0 | 1 | 389 | 1 | 389 | 0.0 | 580 |
| MS.gene21758.t1 | MTR_5g007740 | 80.675 | 326 | 63 | 0 | 64 | 389 | 1 | 326 | 0.0 | 554 |
| MS.gene21758.t1 | MTR_5g007723 | 69.444 | 396 | 74 | 5 | 12 | 389 | 32 | 398 | 0.0 | 536 |
| MS.gene21758.t1 | MTR_5g007770 | 78.333 | 300 | 32 | 2 | 70 | 369 | 1 | 267 | 4.56e-169 | 473 |
| MS.gene21758.t1 | MTR_3g088670 | 48.462 | 390 | 187 | 6 | 10 | 388 | 2 | 388 | 1.25e-128 | 375 |
| MS.gene21758.t1 | MTR_4g075560 | 41.579 | 380 | 215 | 4 | 11 | 387 | 13 | 388 | 1.19e-101 | 306 |
| MS.gene21758.t1 | MTR_4g078730 | 36.461 | 373 | 230 | 2 | 15 | 387 | 24 | 389 | 4.25e-91 | 279 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21758.t1 | AT5G13930 | 82.474 | 388 | 67 | 1 | 3 | 389 | 8 | 395 | 0.0 | 675 |
| MS.gene21758.t1 | AT4G34850 | 39.788 | 377 | 223 | 3 | 15 | 389 | 18 | 392 | 1.10e-96 | 294 |
| MS.gene21758.t1 | AT4G00040 | 38.520 | 392 | 229 | 6 | 1 | 387 | 1 | 385 | 2.87e-94 | 287 |
| MS.gene21758.t1 | AT1G02050 | 38.992 | 377 | 218 | 6 | 15 | 387 | 24 | 392 | 5.87e-86 | 266 |
| MS.gene21758.t1 | AT4G34850 | 39.375 | 320 | 191 | 2 | 72 | 389 | 1 | 319 | 1.76e-81 | 252 |
Find 101 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATATAGGTTTCTCAATTTC+TGG | 0.117134 | 5.2:-1971021 | None:intergenic |
| CTTGTTGGACAAGCACTCTT+TGG | 0.251490 | 5.2:+1970958 | MS.gene21758:CDS |
| CTGATTATAATTCAATCTTC+TGG | 0.262797 | 5.2:+1971211 | MS.gene21758:CDS |
| TTATAATCAGAGATGTTTAA+TGG | 0.263273 | 5.2:-1971198 | None:intergenic |
| GTTTCTCAATTTCTGGTATT+GGG | 0.265654 | 5.2:-1971014 | None:intergenic |
| GGTTTCTCAATTTCTGGTAT+TGG | 0.273222 | 5.2:-1971015 | None:intergenic |
| AAGTGTGTAATCTTTGATTT+TGG | 0.277272 | 5.2:-1970691 | None:intergenic |
| CTTGACTGGGGTGTGTTGTT+TGG | 0.302662 | 5.2:+1971426 | MS.gene21758:CDS |
| AACCTATATTTGAGATGGTT+TGG | 0.308691 | 5.2:+1971034 | MS.gene21758:CDS |
| GCTTCGTTTGGCCAAGGACT+TGG | 0.325403 | 5.2:+1970843 | MS.gene21758:CDS |
| AGAGAAGTACTTAGTGAATA+TGG | 0.329263 | 5.2:+1971315 | MS.gene21758:CDS |
| GATCAAGTTGAACAAAAGTT+AGG | 0.336805 | 5.2:+1971264 | MS.gene21758:CDS |
| GTGTTGTTTGGCTTCGGACC+TGG | 0.373681 | 5.2:+1971438 | MS.gene21758:CDS |
| TGAATACATGGCACCTTCAT+TGG | 0.375324 | 5.2:+1970585 | MS.gene21758:CDS |
| TACCAACTCACAAAACTCTT+AGG | 0.382277 | 5.2:+1970757 | MS.gene21758:CDS |
| CACCTTCTTAAAGATGTTCC+TGG | 0.385004 | 5.2:+1971129 | MS.gene21758:CDS |
| CCAATGGCCATGATGGTTGC+AGG | 0.395368 | 5.2:-1970214 | None:intergenic |
| AGGTGGGACGGTGCTTCGTT+TGG | 0.401843 | 5.2:+1970831 | MS.gene21758:CDS |
| GGAGCTGCTGCACTCATTGT+TGG | 0.411529 | 5.2:+1970985 | MS.gene21758:CDS |
| ACTCATTTGGACAGTCTTGT+TGG | 0.418448 | 5.2:+1970943 | MS.gene21758:CDS |
| TCAATGGCTCCCTCACTGTC+TGG | 0.423950 | 5.2:-1971075 | None:intergenic |
| TGGGGTGTGTTGTTTGGCTT+CGG | 0.424646 | 5.2:+1971432 | MS.gene21758:CDS |
| CCACAGGAGAAGGCCTTGAC+TGG | 0.427586 | 5.2:+1971412 | MS.gene21758:CDS |
| TCAAGAATTGCGGGTCCACC+TGG | 0.431851 | 5.2:-1971243 | None:intergenic |
| AATCAGAGATGTTTAATGGT+TGG | 0.432244 | 5.2:-1971194 | None:intergenic |
| GACAGTGAGGGAGCCATTGA+TGG | 0.433253 | 5.2:+1971078 | MS.gene21758:CDS |
| CTGAAATTCGTCAGGCTCAA+AGG | 0.435277 | 5.2:+1970182 | MS.gene21758:CDS |
| GTCCAAACCATCTCAAATAT+AGG | 0.437103 | 5.2:-1971036 | None:intergenic |
| GACTTGGCTGAGAACAATAA+AGG | 0.438047 | 5.2:+1970859 | MS.gene21758:CDS |
| AGATGAGATGCGAAAGAAAT+CGG | 0.446954 | 5.2:+1971371 | MS.gene21758:CDS |
| CTTTGTTCAACACAGTTGGC+TGG | 0.449203 | 5.2:-1970247 | None:intergenic |
| ACCTTCATTGGATGCTAGGC+AGG | 0.450943 | 5.2:+1970597 | MS.gene21758:CDS |
| CAGTGAAGGCCATAAAAGAA+TGG | 0.456620 | 5.2:+1970662 | MS.gene21758:CDS |
| ATTGTTCTCAGCCAAGTCCT+TGG | 0.461734 | 5.2:-1970854 | None:intergenic |
| CACCTGCAAAACATCCTTGT+TGG | 0.464560 | 5.2:-1970813 | None:intergenic |
| TCAACTTGATCAAGAATTGC+GGG | 0.468071 | 5.2:-1971252 | None:intergenic |
| CATGTATCTCCTCTTGATCA+TGG | 0.469562 | 5.2:-1970521 | None:intergenic |
| GCAGGACATGGTGGTGGTAG+AGG | 0.474656 | 5.2:+1970615 | MS.gene21758:CDS |
| AGTGAAGGCCATAAAAGAAT+GGG | 0.475863 | 5.2:+1970663 | MS.gene21758:CDS |
| GCGAAAGAAATCGGCACAAG+CGG | 0.478166 | 5.2:+1971380 | MS.gene21758:CDS |
| ACCTTCTTAAAGATGTTCCT+GGG | 0.484500 | 5.2:+1971130 | MS.gene21758:CDS |
| GTCTTCGCCCATACGTGAAA+AGG | 0.489151 | 5.2:+1970779 | MS.gene21758:CDS |
| TGAAATTCGTCAGGCTCAAA+GGG | 0.491377 | 5.2:+1970183 | MS.gene21758:CDS |
| TGGTCCTAGTGATACTCATT+TGG | 0.493191 | 5.2:+1970930 | MS.gene21758:CDS |
| GATGGTCATCTCCGTGAAGC+TGG | 0.495570 | 5.2:+1971096 | MS.gene21758:CDS |
| GACGGTGCTTCGTTTGGCCA+AGG | 0.496087 | 5.2:+1970837 | MS.gene21758:CDS |
| TGAGAAACCTATATTTGAGA+TGG | 0.507221 | 5.2:+1971029 | MS.gene21758:CDS |
| TGCAGTGCCAATGGCCATGA+TGG | 0.507335 | 5.2:-1970221 | None:intergenic |
| CCTGCAACCATCATGGCCAT+TGG | 0.508648 | 5.2:+1970214 | MS.gene21758:CDS |
| TGGCACCTTCATTGGATGCT+AGG | 0.509747 | 5.2:+1970593 | MS.gene21758:CDS |
| GAGTGTATCTGAAATTCGTC+AGG | 0.510346 | 5.2:+1970174 | MS.gene21758:CDS |
| GTGAGTTGGTAATCGGCGCC+AGG | 0.512228 | 5.2:-1970745 | None:intergenic |
| ATGGAGAACAACGGTTTCAA+TGG | 0.514382 | 5.2:-1971466 | None:intergenic |
| CCAGTCAAGGCCTTCTCCTG+TGG | 0.516037 | 5.2:-1971412 | None:intergenic |
| CACAGGAGAAGGCCTTGACT+GGG | 0.517127 | 5.2:+1971413 | MS.gene21758:CDS |
| CATTGATAAAGCATTGGTTG+AGG | 0.521385 | 5.2:+1971167 | MS.gene21758:CDS |
| TCCAAGTGTATGTGAATACA+TGG | 0.525305 | 5.2:+1970573 | MS.gene21758:CDS |
| GGACAAGCACTCTTTGGAGA+TGG | 0.536691 | 5.2:+1970964 | MS.gene21758:CDS |
| AGGAAAGGAGGCTGCAGTGA+AGG | 0.539707 | 5.2:+1970648 | MS.gene21758:CDS |
| TTCACGGAGATGACCATCAA+TGG | 0.540133 | 5.2:-1971091 | None:intergenic |
| GCCATGTATTCACATACACT+TGG | 0.545736 | 5.2:-1970574 | None:intergenic |
| AGAAGGCCCTGCAACCATCA+TGG | 0.546762 | 5.2:+1970207 | MS.gene21758:CDS |
| ATCTTCTGGATTGCTCACCC+AGG | 0.549136 | 5.2:+1971225 | MS.gene21758:CDS |
| TCCCAGGAACATCTTTAAGA+AGG | 0.550142 | 5.2:-1971131 | None:intergenic |
| GGACTTAAAACCACAGGAGA+AGG | 0.552447 | 5.2:+1971402 | MS.gene21758:CDS |
| GGCTGGATTTGCAGTGCCAA+TGG | 0.558766 | 5.2:-1970230 | None:intergenic |
| TCCTGCCTAGCATCCAATGA+AGG | 0.559807 | 5.2:-1970598 | None:intergenic |
| CTGTCCAAATGAGTATCACT+AGG | 0.561644 | 5.2:-1970934 | None:intergenic |
| GCAGCCTCCTTTCCTAGTCT+AGG | 0.564443 | 5.2:-1970640 | None:intergenic |
| CGAAAGAAATCGGCACAAGC+GGG | 0.566603 | 5.2:+1971381 | MS.gene21758:CDS |
| CATTTCATATAGCCACGCTA+TGG | 0.567013 | 5.2:-1971485 | None:intergenic |
| TTCAACTTGATCAAGAATTG+CGG | 0.567995 | 5.2:-1971253 | None:intergenic |
| AGAGGTACCTAGACTAGGAA+AGG | 0.571613 | 5.2:+1970633 | MS.gene21758:CDS |
| TTCACTAAGTACTTCTCTAG+TGG | 0.572078 | 5.2:-1971310 | None:intergenic |
| TGCTAGGCAGGACATGGTGG+TGG | 0.573568 | 5.2:+1970609 | MS.gene21758:CDS |
| ACGGTTTCAATGGTAAGTCC+AGG | 0.578176 | 5.2:-1971456 | None:intergenic |
| CAATGGCCATGATGGTTGCA+GGG | 0.578454 | 5.2:-1970213 | None:intergenic |
| GTGATAAATCCATGATCAAG+AGG | 0.584564 | 5.2:+1970512 | MS.gene21758:CDS |
| ATTGGATGCTAGGCAGGACA+TGG | 0.585693 | 5.2:+1970603 | MS.gene21758:CDS |
| CAAGAATTGCGGGTCCACCT+GGG | 0.591037 | 5.2:-1971242 | None:intergenic |
| CGTCAGGCTCAAAGGGCAGA+AGG | 0.594346 | 5.2:+1970190 | MS.gene21758:CDS |
| GAAATGTTAGACCAGCTTCA+CGG | 0.597537 | 5.2:-1971107 | None:intergenic |
| ACAAGTGGTGTAGACATGCC+TGG | 0.600112 | 5.2:+1970727 | MS.gene21758:CDS |
| AGGCATGTCTACACCACTTG+TGG | 0.602236 | 5.2:-1970725 | None:intergenic |
| TTCTGGATTGCTCACCCAGG+TGG | 0.608006 | 5.2:+1971228 | MS.gene21758:CDS |
| CAATAAAGGTGCTCGTGTGT+TGG | 0.608320 | 5.2:+1970873 | MS.gene21758:CDS |
| TGTGCTTTGTTCAACACAGT+TGG | 0.612931 | 5.2:-1970251 | None:intergenic |
| AACCGTTGTTCTCCATAGCG+TGG | 0.616131 | 5.2:+1971473 | MS.gene21758:CDS |
| CAAGCGGGACTTAAAACCAC+AGG | 0.631621 | 5.2:+1971396 | MS.gene21758:CDS |
| GTGGTAGAGGTACCTAGACT+AGG | 0.632093 | 5.2:+1970628 | MS.gene21758:CDS |
| CAAACAACACACCCCAGTCA+AGG | 0.632254 | 5.2:-1971425 | None:intergenic |
| AATGAGTATCACTAGGACCA+CGG | 0.635157 | 5.2:-1970927 | None:intergenic |
| AACAATTGCTCCAGACAGTG+AGG | 0.638797 | 5.2:+1971065 | MS.gene21758:CDS |
| GGTACCTAGACTAGGAAAGG+AGG | 0.643500 | 5.2:+1970636 | MS.gene21758:CDS |
| GTTACTGCTGTGACATTCCG+TGG | 0.652143 | 5.2:+1970910 | MS.gene21758:CDS |
| ACAATTGCTCCAGACAGTGA+GGG | 0.658063 | 5.2:+1971066 | MS.gene21758:CDS |
| GTGAAGGCCATAAAAGAATG+GGG | 0.663419 | 5.2:+1970664 | MS.gene21758:CDS |
| GGATGCTAGGCAGGACATGG+TGG | 0.681727 | 5.2:+1970606 | MS.gene21758:CDS |
| AGGTATATGATGTACCAACA+AGG | 0.699849 | 5.2:+1970799 | MS.gene21758:CDS |
| ACAGGAGAAGGCCTTGACTG+GGG | 0.709796 | 5.2:+1971414 | MS.gene21758:CDS |
| AGCCACGCTATGGAGAACAA+CGG | 0.751325 | 5.2:-1971475 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAACATTGATAAAGCAT+TGG | + | chr5.2:1971161-1971180 | MS.gene21758:CDS | 20.0% |
| !! | TTATAATCAGAGATGTTTAA+TGG | - | chr5.2:1971201-1971220 | None:intergenic | 20.0% |
| !!! | ACATTAGTACAACAATTTTT+GGG | - | chr5.2:1970472-1970491 | None:intergenic | 20.0% |
| !!! | ATTTTCTTTCAAAATCTCTT+CGG | - | chr5.2:1970554-1970573 | None:intergenic | 20.0% |
| !!! | TACATTAGTACAACAATTTT+TGG | - | chr5.2:1970473-1970492 | None:intergenic | 20.0% |
| ! | AATATAGGTTTCTCAATTTC+TGG | - | chr5.2:1971024-1971043 | None:intergenic | 25.0% |
| ! | ATACCTAGAAACAATTTGAT+AGG | - | chr5.2:1970406-1970425 | None:intergenic | 25.0% |
| ! | CTGATTATAATTCAATCTTC+TGG | + | chr5.2:1971211-1971230 | MS.gene21758:CDS | 25.0% |
| ! | GTAATTTCTTTAACTACTTC+AGG | + | chr5.2:1970490-1970509 | MS.gene21758:intron | 25.0% |
| ! | TACCTAGAAACAATTTGATA+GGG | - | chr5.2:1970405-1970424 | None:intergenic | 25.0% |
| !!! | AAGTGTGTAATCTTTGATTT+TGG | - | chr5.2:1970694-1970713 | None:intergenic | 25.0% |
| AAAACCAATCACATGATAGT+AGG | - | chr5.2:1970442-1970461 | None:intergenic | 30.0% | |
| AATCAGAGATGTTTAATGGT+TGG | - | chr5.2:1971197-1971216 | None:intergenic | 30.0% | |
| TGAGAAACCTATATTTGAGA+TGG | + | chr5.2:1971029-1971048 | MS.gene21758:CDS | 30.0% | |
| TTCAACTTGATCAAGAATTG+CGG | - | chr5.2:1971256-1971275 | None:intergenic | 30.0% | |
| ! | AACCTATATTTGAGATGGTT+TGG | + | chr5.2:1971034-1971053 | MS.gene21758:CDS | 30.0% |
| ! | ATCATATACCTTTTCACGTA+TGG | - | chr5.2:1970790-1970809 | None:intergenic | 30.0% |
| ! | TCATATACCTTTTCACGTAT+GGG | - | chr5.2:1970789-1970808 | None:intergenic | 30.0% |
| ! | TTCCCTATCAAATTGTTTCT+AGG | + | chr5.2:1970400-1970419 | MS.gene21758:intron | 30.0% |
| !! | AGAGAAGTACTTAGTGAATA+TGG | + | chr5.2:1971315-1971334 | MS.gene21758:CDS | 30.0% |
| !! | GATCAAGTTGAACAAAAGTT+AGG | + | chr5.2:1971264-1971283 | MS.gene21758:CDS | 30.0% |
| !! | GTTTCTCAATTTCTGGTATT+GGG | - | chr5.2:1971017-1971036 | None:intergenic | 30.0% |
| !!! | ATGTTTTTTGAAACAATCCC+AGG | - | chr5.2:1971150-1971169 | None:intergenic | 30.0% |
| !!! | GTGATTTTGAAGTAGAAATC+AGG | - | chr5.2:1970280-1970299 | None:intergenic | 30.0% |
| !!! | TACTATCATGTGATTGGTTT+TGG | + | chr5.2:1970441-1970460 | MS.gene21758:intron | 30.0% |
| AAGACCTACTATCATGTGAT+TGG | + | chr5.2:1970435-1970454 | MS.gene21758:intron | 35.0% | |
| ACCTTCTTAAAGATGTTCCT+GGG | + | chr5.2:1971130-1971149 | MS.gene21758:CDS | 35.0% | |
| AGATGAGATGCGAAAGAAAT+CGG | + | chr5.2:1971371-1971390 | MS.gene21758:CDS | 35.0% | |
| AGGTATATGATGTACCAACA+AGG | + | chr5.2:1970799-1970818 | MS.gene21758:CDS | 35.0% | |
| AGTGAAGGCCATAAAAGAAT+GGG | + | chr5.2:1970663-1970682 | MS.gene21758:CDS | 35.0% | |
| GTCCAAACCATCTCAAATAT+AGG | - | chr5.2:1971039-1971058 | None:intergenic | 35.0% | |
| GTGATAAATCCATGATCAAG+AGG | + | chr5.2:1970512-1970531 | MS.gene21758:CDS | 35.0% | |
| TACCAACTCACAAAACTCTT+AGG | + | chr5.2:1970757-1970776 | MS.gene21758:CDS | 35.0% | |
| TCAACTTGATCAAGAATTGC+GGG | - | chr5.2:1971255-1971274 | None:intergenic | 35.0% | |
| TCCAAGTGTATGTGAATACA+TGG | + | chr5.2:1970573-1970592 | MS.gene21758:CDS | 35.0% | |
| TTCACTAAGTACTTCTCTAG+TGG | - | chr5.2:1971313-1971332 | None:intergenic | 35.0% | |
| !! | CATTGATAAAGCATTGGTTG+AGG | + | chr5.2:1971167-1971186 | MS.gene21758:CDS | 35.0% |
| !! | GGTTTCTCAATTTCTGGTAT+TGG | - | chr5.2:1971018-1971037 | None:intergenic | 35.0% |
| !! | GTGTAATCTTTGATTTTGGC+TGG | - | chr5.2:1970690-1970709 | None:intergenic | 35.0% |
| !!! | GAGTTTTGTGAGTTGGTAAT+CGG | - | chr5.2:1970755-1970774 | None:intergenic | 35.0% |
| AATGAGTATCACTAGGACCA+CGG | - | chr5.2:1970930-1970949 | None:intergenic | 40.0% | |
| ATGGAGAACAACGGTTTCAA+TGG | - | chr5.2:1971469-1971488 | None:intergenic | 40.0% | |
| CACCTTCTTAAAGATGTTCC+TGG | + | chr5.2:1971129-1971148 | MS.gene21758:CDS | 40.0% | |
| CAGTGAAGGCCATAAAAGAA+TGG | + | chr5.2:1970662-1970681 | MS.gene21758:CDS | 40.0% | |
| CATGTATCTCCTCTTGATCA+TGG | - | chr5.2:1970524-1970543 | None:intergenic | 40.0% | |
| CTGTCCAAATGAGTATCACT+AGG | - | chr5.2:1970937-1970956 | None:intergenic | 40.0% | |
| GAAATGTTAGACCAGCTTCA+CGG | - | chr5.2:1971110-1971129 | None:intergenic | 40.0% | |
| GACTTGGCTGAGAACAATAA+AGG | + | chr5.2:1970859-1970878 | MS.gene21758:CDS | 40.0% | |
| GCCATGTATTCACATACACT+TGG | - | chr5.2:1970577-1970596 | None:intergenic | 40.0% | |
| GTGAAGGCCATAAAAGAATG+GGG | + | chr5.2:1970664-1970683 | MS.gene21758:CDS | 40.0% | |
| TGAAATTCGTCAGGCTCAAA+GGG | + | chr5.2:1970183-1970202 | MS.gene21758:CDS | 40.0% | |
| TGAATACATGGCACCTTCAT+TGG | + | chr5.2:1970585-1970604 | MS.gene21758:CDS | 40.0% | |
| TGGTCCTAGTGATACTCATT+TGG | + | chr5.2:1970930-1970949 | MS.gene21758:CDS | 40.0% | |
| ! | AACAAGGATGTTTTGCAGGT+GGG | + | chr5.2:1970815-1970834 | MS.gene21758:CDS | 40.0% |
| ! | ACTCATTTGGACAGTCTTGT+TGG | + | chr5.2:1970943-1970962 | MS.gene21758:CDS | 40.0% |
| ! | CTAGTGGCTTTCATCTTTTC+AGG | - | chr5.2:1971297-1971316 | None:intergenic | 40.0% |
| ! | GAGTGTATCTGAAATTCGTC+AGG | + | chr5.2:1970174-1970193 | MS.gene21758:CDS | 40.0% |
| ! | TACCAACAAGGATGTTTTGC+AGG | + | chr5.2:1970811-1970830 | MS.gene21758:CDS | 40.0% |
| ! | TCCCAGGAACATCTTTAAGA+AGG | - | chr5.2:1971134-1971153 | None:intergenic | 40.0% |
| ! | TGTGCTTTGTTCAACACAGT+TGG | - | chr5.2:1970254-1970273 | None:intergenic | 40.0% |
| ! | TTGATCTTTTGCACCACAAG+TGG | + | chr5.2:1970712-1970731 | MS.gene21758:CDS | 40.0% |
| !! | GACCTAAGAGTTTTGTGAGT+TGG | - | chr5.2:1970762-1970781 | None:intergenic | 40.0% |
| AACAATTGCTCCAGACAGTG+AGG | + | chr5.2:1971065-1971084 | MS.gene21758:CDS | 45.0% | |
| ACAATTGCTCCAGACAGTGA+GGG | + | chr5.2:1971066-1971085 | MS.gene21758:CDS | 45.0% | |
| ACGGTTTCAATGGTAAGTCC+AGG | - | chr5.2:1971459-1971478 | None:intergenic | 45.0% | |
| ATTGTTCTCAGCCAAGTCCT+TGG | - | chr5.2:1970857-1970876 | None:intergenic | 45.0% | |
| CACCTGCAAAACATCCTTGT+TGG | - | chr5.2:1970816-1970835 | None:intergenic | 45.0% | |
| CTGAAATTCGTCAGGCTCAA+AGG | + | chr5.2:1970182-1970201 | MS.gene21758:CDS | 45.0% | |
| CTTGTTGGACAAGCACTCTT+TGG | + | chr5.2:1970958-1970977 | MS.gene21758:CDS | 45.0% | |
| CTTTGTTCAACACAGTTGGC+TGG | - | chr5.2:1970250-1970269 | None:intergenic | 45.0% | |
| GGACTTAAAACCACAGGAGA+AGG | + | chr5.2:1971402-1971421 | MS.gene21758:CDS | 45.0% | |
| TTCACGGAGATGACCATCAA+TGG | - | chr5.2:1971094-1971113 | None:intergenic | 45.0% | |
| ! | CAACAAGGATGTTTTGCAGG+TGG | + | chr5.2:1970814-1970833 | MS.gene21758:CDS | 45.0% |
| !! | AGAGGTACCTAGACTAGGAA+AGG | + | chr5.2:1970633-1970652 | MS.gene21758:CDS | 45.0% |
| !! | CAATAAAGGTGCTCGTGTGT+TGG | + | chr5.2:1970873-1970892 | MS.gene21758:CDS | 45.0% |
| AACCGTTGTTCTCCATAGCG+TGG | + | chr5.2:1971473-1971492 | MS.gene21758:CDS | 50.0% | |
| ACAAGTGGTGTAGACATGCC+TGG | + | chr5.2:1970727-1970746 | MS.gene21758:CDS | 50.0% | |
| ACCTTCATTGGATGCTAGGC+AGG | + | chr5.2:1970597-1970616 | MS.gene21758:CDS | 50.0% | |
| AGCCACGCTATGGAGAACAA+CGG | - | chr5.2:1971478-1971497 | None:intergenic | 50.0% | |
| AGGCATGTCTACACCACTTG+TGG | - | chr5.2:1970728-1970747 | None:intergenic | 50.0% | |
| ATCTTCTGGATTGCTCACCC+AGG | + | chr5.2:1971225-1971244 | MS.gene21758:CDS | 50.0% | |
| ATTGGATGCTAGGCAGGACA+TGG | + | chr5.2:1970603-1970622 | MS.gene21758:CDS | 50.0% | |
| CAAACAACACACCCCAGTCA+AGG | - | chr5.2:1971428-1971447 | None:intergenic | 50.0% | |
| CAAGCGGGACTTAAAACCAC+AGG | + | chr5.2:1971396-1971415 | MS.gene21758:CDS | 50.0% | |
| CAATGGCCATGATGGTTGCA+GGG | - | chr5.2:1970216-1970235 | None:intergenic | 50.0% | |
| CGAAAGAAATCGGCACAAGC+GGG | + | chr5.2:1971381-1971400 | MS.gene21758:CDS | 50.0% | |
| GCGAAAGAAATCGGCACAAG+CGG | + | chr5.2:1971380-1971399 | MS.gene21758:CDS | 50.0% | |
| GGTACCTAGACTAGGAAAGG+AGG | + | chr5.2:1970636-1970655 | MS.gene21758:CDS | 50.0% | |
| GTCTTCGCCCATACGTGAAA+AGG | + | chr5.2:1970779-1970798 | MS.gene21758:CDS | 50.0% | |
| GTTACTGCTGTGACATTCCG+TGG | + | chr5.2:1970910-1970929 | MS.gene21758:CDS | 50.0% | |
| TCCTGCCTAGCATCCAATGA+AGG | - | chr5.2:1970601-1970620 | None:intergenic | 50.0% | |
| TGGCACCTTCATTGGATGCT+AGG | + | chr5.2:1970593-1970612 | MS.gene21758:CDS | 50.0% | |
| ! | AGGATGTTTTGCAGGTGGGA+CGG | + | chr5.2:1970819-1970838 | MS.gene21758:CDS | 50.0% |
| ! | CTTGACTGGGGTGTGTTGTT+TGG | + | chr5.2:1971426-1971445 | MS.gene21758:CDS | 50.0% |
| ! | GGACAAGCACTCTTTGGAGA+TGG | + | chr5.2:1970964-1970983 | MS.gene21758:CDS | 50.0% |
| !! | GTGGTAGAGGTACCTAGACT+AGG | + | chr5.2:1970628-1970647 | MS.gene21758:CDS | 50.0% |
| !! | TGGCTGGCCCCATTCTTTTA+TGG | - | chr5.2:1970674-1970693 | None:intergenic | 50.0% |
| !! | TGGGGTGTGTTGTTTGGCTT+CGG | + | chr5.2:1971432-1971451 | MS.gene21758:CDS | 50.0% |
| ACAGGAGAAGGCCTTGACTG+GGG | + | chr5.2:1971414-1971433 | MS.gene21758:CDS | 55.0% | |
| AGAAGGCCCTGCAACCATCA+TGG | + | chr5.2:1970207-1970226 | MS.gene21758:CDS | 55.0% | |
| AGGAAAGGAGGCTGCAGTGA+AGG | + | chr5.2:1970648-1970667 | MS.gene21758:CDS | 55.0% | |
| CAAGAATTGCGGGTCCACCT+GGG | - | chr5.2:1971245-1971264 | None:intergenic | 55.0% | |
| CACAGGAGAAGGCCTTGACT+GGG | + | chr5.2:1971413-1971432 | MS.gene21758:CDS | 55.0% | |
| CCAATGGCCATGATGGTTGC+AGG | - | chr5.2:1970217-1970236 | None:intergenic | 55.0% | |
| CCTGCAACCATCATGGCCAT+TGG | + | chr5.2:1970214-1970233 | MS.gene21758:CDS | 55.0% | |
| GACAGTGAGGGAGCCATTGA+TGG | + | chr5.2:1971078-1971097 | MS.gene21758:CDS | 55.0% | |
| GATGGTCATCTCCGTGAAGC+TGG | + | chr5.2:1971096-1971115 | MS.gene21758:CDS | 55.0% | |
| GCAGCCTCCTTTCCTAGTCT+AGG | - | chr5.2:1970643-1970662 | None:intergenic | 55.0% | |
| GCTTCGTTTGGCCAAGGACT+TGG | + | chr5.2:1970843-1970862 | MS.gene21758:CDS | 55.0% | |
| GGAGCTGCTGCACTCATTGT+TGG | + | chr5.2:1970985-1971004 | MS.gene21758:CDS | 55.0% | |
| GGCTGGATTTGCAGTGCCAA+TGG | - | chr5.2:1970233-1970252 | None:intergenic | 55.0% | |
| TCAAGAATTGCGGGTCCACC+TGG | - | chr5.2:1971246-1971265 | None:intergenic | 55.0% | |
| TCAATGGCTCCCTCACTGTC+TGG | - | chr5.2:1971078-1971097 | None:intergenic | 55.0% | |
| TGCAGTGCCAATGGCCATGA+TGG | - | chr5.2:1970224-1970243 | None:intergenic | 55.0% | |
| TTCTGGATTGCTCACCCAGG+TGG | + | chr5.2:1971228-1971247 | MS.gene21758:CDS | 55.0% | |
| !! | GTGTTGTTTGGCTTCGGACC+TGG | + | chr5.2:1971438-1971457 | MS.gene21758:CDS | 55.0% |
| AGGTGGGACGGTGCTTCGTT+TGG | + | chr5.2:1970831-1970850 | MS.gene21758:CDS | 60.0% | |
| CCACAGGAGAAGGCCTTGAC+TGG | + | chr5.2:1971412-1971431 | MS.gene21758:CDS | 60.0% | |
| CCAGTCAAGGCCTTCTCCTG+TGG | - | chr5.2:1971415-1971434 | None:intergenic | 60.0% | |
| CGTCAGGCTCAAAGGGCAGA+AGG | + | chr5.2:1970190-1970209 | MS.gene21758:CDS | 60.0% | |
| GACGGTGCTTCGTTTGGCCA+AGG | + | chr5.2:1970837-1970856 | MS.gene21758:CDS | 60.0% | |
| GGATGCTAGGCAGGACATGG+TGG | + | chr5.2:1970606-1970625 | MS.gene21758:CDS | 60.0% | |
| TGCTAGGCAGGACATGGTGG+TGG | + | chr5.2:1970609-1970628 | MS.gene21758:CDS | 60.0% | |
| !! | GCAGGACATGGTGGTGGTAG+AGG | + | chr5.2:1970615-1970634 | MS.gene21758:CDS | 60.0% |
| !! | GTGAGTTGGTAATCGGCGCC+AGG | - | chr5.2:1970748-1970767 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 1970169 | 1971503 | 1970169 | ID=MS.gene21758 |
| chr5.2 | mRNA | 1970169 | 1971503 | 1970169 | ID=MS.gene21758.t1;Parent=MS.gene21758 |
| chr5.2 | exon | 1970169 | 1970346 | 1970169 | ID=MS.gene21758.t1.exon1;Parent=MS.gene21758.t1 |
| chr5.2 | CDS | 1970169 | 1970346 | 1970169 | ID=cds.MS.gene21758.t1;Parent=MS.gene21758.t1 |
| chr5.2 | exon | 1970512 | 1971503 | 1970512 | ID=MS.gene21758.t1.exon2;Parent=MS.gene21758.t1 |
| chr5.2 | CDS | 1970512 | 1971503 | 1970512 | ID=cds.MS.gene21758.t1;Parent=MS.gene21758.t1 |
| Gene Sequence |
| Protein sequence |
