AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene22376

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22376.t1 MTR_7g103030 100.000 250 0 0 1 250 1 250 7.98e-175 481
MS.gene22376.t1 MTR_4g063090 74.603 252 62 2 1 250 1 252 5.56e-121 345
MS.gene22376.t1 MTR_1g115405 67.460 252 80 2 1 250 1 252 1.50e-114 328
MS.gene22376.t1 MTR_7g023350 69.841 252 74 2 1 250 1 252 1.00e-109 317
MS.gene22376.t1 MTR_2g101370 61.224 245 94 1 4 247 3 247 1.55e-95 280
MS.gene22376.t1 MTR_8g013680 61.847 249 93 2 3 250 1 248 2.40e-94 277
MS.gene22376.t1 MTR_1g077540 54.264 258 110 2 1 250 1 258 3.74e-94 277
MS.gene22376.t1 MTR_6g069040 57.647 255 103 2 1 250 1 255 1.97e-91 270
MS.gene22376.t1 MTR_5g012810 62.602 246 91 1 5 250 3 247 2.79e-90 267
MS.gene22376.t1 MTR_1g006490 53.226 248 111 3 3 249 1 244 8.88e-83 248
MS.gene22376.t1 MTR_1g006590 52.869 244 110 3 3 245 1 240 4.53e-79 238
MS.gene22376.t1 MTR_2g060360 43.421 228 126 3 12 237 10 236 7.20e-52 169
MS.gene22376.t1 MTR_2g094270 36.653 251 141 6 12 245 31 280 1.23e-39 139
MS.gene22376.t1 MTR_4g415300 35.965 228 131 5 21 236 56 280 1.01e-35 129
MS.gene22376.t1 MTR_7g101190 36.087 230 130 5 21 234 39 267 9.19e-35 126
MS.gene22376.t1 MTR_4g059390 34.800 250 146 6 12 245 30 278 1.29e-34 125
MS.gene22376.t1 MTR_3g118010 36.986 219 119 6 21 225 37 250 9.54e-34 123
MS.gene22376.t1 MTR_3g070210 34.310 239 141 5 11 236 45 280 9.62e-33 120
MS.gene22376.t1 MTR_5g010150 34.016 244 137 6 10 236 41 277 1.11e-32 120
MS.gene22376.t1 MTR_8g098375 33.333 243 138 6 11 236 42 277 1.50e-32 120
MS.gene22376.t1 MTR_1g095070 40.000 180 95 4 69 236 25 203 1.60e-32 118
MS.gene22376.t1 MTR_5g063930 33.735 249 149 4 4 248 23 259 4.82e-32 118
MS.gene22376.t1 MTR_5g082070 34.286 245 140 7 11 240 45 283 3.88e-31 116
MS.gene22376.t1 MTR_2g094270 37.104 221 121 6 12 215 31 250 1.93e-30 114
MS.gene22376.t1 MTR_2g017620 34.914 232 142 5 16 245 19 243 8.67e-28 107
MS.gene22376.t1 MTR_2g017620 34.468 235 145 5 16 248 33 260 1.45e-27 107
MS.gene22376.t1 MTR_2g017590 34.016 244 150 5 1 240 13 249 2.71e-27 106
MS.gene22376.t1 MTR_3g008920 36.638 232 122 9 25 249 30 243 1.41e-25 101
MS.gene22376.t1 MTR_8g087710 35.616 219 131 6 20 236 38 248 2.50e-25 101
MS.gene22376.t1 MTR_1g070385 30.973 226 147 5 24 248 65 282 2.73e-25 104
MS.gene22376.t1 MTR_2g017660 34.483 232 138 7 20 249 38 257 6.18e-25 100
MS.gene22376.t1 MTR_5g079570 33.937 221 131 5 20 236 39 248 8.58e-25 99.8
MS.gene22376.t1 MTR_1g095070 40.252 159 82 4 69 215 25 182 1.65e-24 97.1
MS.gene22376.t1 MTR_3g070210 33.032 221 132 5 11 218 45 262 3.76e-24 98.2
MS.gene22376.t1 MTR_4g006730 36.893 206 113 5 25 225 79 272 3.09e-23 96.3
MS.gene22376.t1 MTR_8g087720 32.365 241 143 7 4 236 19 247 6.57e-23 94.4
MS.gene22376.t1 MTR_2g104940 35.922 206 115 6 25 225 84 277 6.82e-23 95.1
MS.gene22376.t1 MTR_7g010650 32.751 229 147 3 21 249 37 258 2.14e-22 93.2
MS.gene22376.t1 MTR_2g017620 35.632 174 108 3 78 249 9 180 2.82e-22 90.9
MS.gene22376.t1 MTR_2g017610 33.333 225 140 6 20 243 37 252 2.89e-22 92.8
MS.gene22376.t1 MTR_4g084880 30.942 223 138 4 20 236 34 246 3.90e-22 92.4
MS.gene22376.t1 MTR_2g017570 32.889 225 141 6 20 243 37 252 1.10e-21 91.3
MS.gene22376.t1 MTR_1g097840 33.913 230 140 7 19 246 73 292 6.61e-21 89.7
MS.gene22376.t1 MTR_4g415300 35.583 163 97 3 21 178 56 215 1.29e-20 87.4
MS.gene22376.t1 MTR_4g059390 35.227 176 104 4 12 178 30 204 2.10e-20 86.3
MS.gene22376.t1 MTR_4g006730 35.533 197 110 5 34 225 1 185 2.35e-19 84.0
MS.gene22376.t1 MTR_4g006630 35.533 197 110 5 34 225 1 185 2.48e-19 84.0
MS.gene22376.t1 MTR_3g070210 33.742 163 99 3 11 167 45 204 2.57e-17 78.2
MS.gene22376.t1 MTR_8g098375 32.044 181 106 4 11 181 42 215 2.70e-17 78.6
MS.gene22376.t1 MTR_5g010150 32.961 179 103 4 10 178 41 212 2.76e-17 78.2
MS.gene22376.t1 MTR_4g075570 28.235 255 149 9 12 243 42 285 1.45e-16 78.2
MS.gene22376.t1 MTR_4g075590 29.231 260 152 9 12 249 28 277 3.10e-16 77.0
MS.gene22376.t1 MTR_4g006730 36.257 171 92 5 25 190 79 237 9.77e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22376.t1 AT2G36830 79.681 251 50 1 1 250 1 251 1.18e-141 397
MS.gene22376.t1 AT3G26520 75.099 253 60 3 1 250 1 253 3.11e-130 369
MS.gene22376.t1 AT4G01470 71.825 252 69 2 1 250 1 252 2.74e-121 346
MS.gene22376.t1 AT5G47450 62.195 246 91 2 5 249 3 247 2.71e-95 280
MS.gene22376.t1 AT3G16240 57.600 250 104 2 3 250 1 250 1.00e-89 266
MS.gene22376.t1 AT1G73190 56.107 262 100 3 4 250 7 268 5.58e-87 259
MS.gene22376.t1 AT1G17810 55.939 261 101 3 4 250 7 267 1.12e-86 258
MS.gene22376.t1 AT4G17340 60.976 246 94 2 5 249 3 247 9.73e-85 253
MS.gene22376.t1 AT2G25810 50.403 248 116 4 3 249 1 242 7.50e-72 220
MS.gene22376.t1 AT3G47440 45.662 219 115 4 18 234 20 236 2.48e-49 163
MS.gene22376.t1 AT2G37170 36.255 251 141 7 12 245 28 276 2.30e-38 135
MS.gene22376.t1 AT2G37170 36.255 251 141 7 12 245 71 319 3.33e-38 136
MS.gene22376.t1 AT2G37180 36.255 251 141 7 12 245 28 276 3.88e-38 135
MS.gene22376.t1 AT3G53420 37.344 241 134 6 21 245 39 278 2.03e-37 133
MS.gene22376.t1 AT3G53420 37.344 241 134 6 21 245 39 278 2.03e-37 133
MS.gene22376.t1 AT2G39010 34.940 249 142 6 2 234 22 266 2.80e-37 132
MS.gene22376.t1 AT3G54820 36.522 230 129 5 21 234 38 266 5.15e-37 132
MS.gene22376.t1 AT5G60660 35.270 241 139 6 12 236 30 269 1.54e-34 125
MS.gene22376.t1 AT2G16850 37.327 217 121 5 21 225 36 249 1.56e-34 125
MS.gene22376.t1 AT4G35100 35.865 237 137 5 21 245 38 271 3.36e-34 124
MS.gene22376.t1 AT4G35100 35.865 237 137 5 21 245 38 271 3.36e-34 124
MS.gene22376.t1 AT4G00430 34.454 238 141 5 11 236 43 277 2.00e-33 122
MS.gene22376.t1 AT3G61430 36.638 232 131 6 21 240 52 279 2.34e-33 122
MS.gene22376.t1 AT3G61430 36.638 232 131 6 21 240 52 279 2.34e-33 122
MS.gene22376.t1 AT2G45960 36.207 232 132 6 21 240 52 279 4.96e-33 121
MS.gene22376.t1 AT4G23400 35.776 232 126 7 21 236 53 277 5.07e-33 121
MS.gene22376.t1 AT1G01620 34.649 228 134 5 21 236 52 276 1.96e-32 120
MS.gene22376.t1 AT1G01620 37.234 188 103 5 63 236 18 204 3.29e-28 107
MS.gene22376.t1 AT1G80760 34.667 225 128 6 25 243 84 295 1.64e-25 102
MS.gene22376.t1 AT2G45960 33.790 219 120 6 21 217 52 267 2.48e-24 99.0
MS.gene22376.t1 AT2G45960 34.783 207 120 5 21 215 52 255 3.05e-24 98.2
MS.gene22376.t1 AT5G37820 34.081 223 137 5 24 245 46 259 1.48e-22 94.0
MS.gene22376.t1 AT4G10380 34.764 233 141 5 17 246 72 296 2.57e-22 93.6
MS.gene22376.t1 AT5G37820 34.081 223 137 5 24 245 82 295 2.87e-22 94.0
MS.gene22376.t1 AT2G39010 34.857 175 101 4 2 167 22 192 4.45e-22 91.3
MS.gene22376.t1 AT4G19030 31.858 226 124 6 20 230 54 264 7.38e-22 92.4
MS.gene22376.t1 AT4G18910 31.034 232 131 6 20 236 51 268 1.08e-21 91.7
MS.gene22376.t1 AT5G37810 33.036 224 141 5 24 245 46 262 1.71e-21 90.9
MS.gene22376.t1 AT1G52180 48.352 91 47 0 125 215 34 124 6.17e-21 85.5
MS.gene22376.t1 AT3G06100 28.452 239 165 3 2 240 27 259 7.61e-21 89.0
MS.gene22376.t1 AT3G06100 30.332 211 141 3 24 234 1 205 4.16e-20 86.3
MS.gene22376.t1 AT1G31885 34.272 213 121 5 24 226 46 249 6.27e-20 87.4
MS.gene22376.t1 AT1G31885 37.179 156 88 3 78 225 41 194 3.41e-17 79.0
MS.gene22376.t1 AT4G00430 33.951 162 99 3 11 167 43 201 5.96e-17 77.4
MS.gene22376.t1 AT2G34390 30.222 225 141 6 20 236 47 263 2.67e-14 71.2
MS.gene22376.t1 AT2G34390 30.317 221 138 6 24 236 9 221 5.01e-14 70.1
MS.gene22376.t1 AT3G06100 32.308 130 87 1 105 234 44 172 1.62e-13 67.8
MS.gene22376.t1 AT4G19030 29.891 184 100 5 20 188 54 223 1.21e-11 62.8

Find 107 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCCAATGTTACCCTTCTT+TGG 0.212168 7.3:-11162520 None:intergenic
CATTGTTGGTGCTAACATTT+TGG 0.214654 7.3:+11162567 MS.gene22376:CDS
GTCTTCGCCGGTTCAGGTTC+CGG 0.279072 7.3:+11161953 MS.gene22376:CDS
GGTCCAACCACTGGGTCTAC+TGG 0.291738 7.3:+11162662 MS.gene22376:CDS
TACTGGGCTGGCCCACTTAT+CGG 0.311103 7.3:+11162679 MS.gene22376:CDS
ATCTTTGTCTTCGCCGGTTC+AGG 0.322662 7.3:+11161947 MS.gene22376:CDS
CTTATCGGTGGTGGAATTGC+TGG 0.323157 7.3:+11162694 MS.gene22376:CDS
TTCCAATGTTACCCTTCTTT+GGG 0.343393 7.3:-11162519 None:intergenic
ATTATTGCACCAATTGCTAT+TGG 0.349026 7.3:+11162541 MS.gene22376:CDS
TTGGAGATTGTGATGACCTT+TGG 0.349069 7.3:+11162463 MS.gene22376:CDS
TTGGTTGGTGGAGCCTTTAC+CGG 0.366838 7.3:+11162586 MS.gene22376:CDS
GCTGGAGCTGGTCCAACCAC+TGG 0.370487 7.3:+11162653 MS.gene22376:CDS
ATTGCTATTGGTTTCATTGT+TGG 0.373919 7.3:+11162553 MS.gene22376:CDS
CTCAGCCAAACCAGCTTTCA+AGG 0.378565 7.3:-11161909 None:intergenic
AAACCAGCTTTCAAGGTGTC+TGG 0.380207 7.3:-11161902 None:intergenic
AGTTGGAGTTGGACCAGCTT+TGG 0.387058 7.3:+11162438 MS.gene22376:CDS
CTGCTGTTGTGAGCTGGAGC+TGG 0.387382 7.3:+11162641 MS.gene22376:CDS
AGACACCTTGAAAGCTGGTT+TGG 0.388141 7.3:+11161904 MS.gene22376:CDS
TCGGGCCTGCTGTTGTGAGC+TGG 0.388266 7.3:+11162635 MS.gene22376:CDS
GAATGACACTGCTGGGTTCA+TGG 0.394289 7.3:-11162614 None:intergenic
CCCATCTAGTAGTCAGTAGT+TGG 0.396152 7.3:-11162763 None:intergenic
TGCGATACCGGAACCTGAAC+CGG 0.401710 7.3:-11161960 None:intergenic
TTGCAGTCTGTTCCAGCATT+CGG 0.404116 7.3:+11162403 MS.gene22376:intron
GTCAACCCCGCTGTCACCTT+CGG 0.406903 7.3:+11162103 MS.gene22376:CDS
CCTCGTCTTTGTTACCGCTT+CGG 0.409303 7.3:+11162213 MS.gene22376:CDS
CAGTAGTTGGGAGCTGCTCA+TGG 0.412257 7.3:-11162750 None:intergenic
TGAACCCAGCAGTGTCATTC+GGG 0.413725 7.3:+11162617 MS.gene22376:CDS
AACCACTGGGTCTACTGGGC+TGG 0.414067 7.3:+11162667 MS.gene22376:CDS
CTCTTTGTTGCTGTCTCCGT+TGG 0.414749 7.3:+11162058 MS.gene22376:CDS
ATGAACCCAGCAGTGTCATT+CGG 0.415899 7.3:+11162616 MS.gene22376:CDS
ACCTTCATCTTTGTCTTCGC+CGG 0.420629 7.3:+11161941 MS.gene22376:CDS
GTCCAACCACTGGGTCTACT+GGG 0.451536 7.3:+11162663 MS.gene22376:CDS
AATTGCTGGGCTTGTCTATG+AGG 0.457537 7.3:+11162708 MS.gene22376:CDS
TGCTGGGTTCATGGATGCTC+CGG 0.461853 7.3:-11162605 None:intergenic
CTGGAGCTGGTCCAACCACT+GGG 0.462301 7.3:+11162654 MS.gene22376:CDS
GACGGTGCTGCCACCCCTGC+CGG 0.462881 7.3:+11162001 MS.gene22376:CDS
CACCCAGACACCTTGAAAGC+TGG 0.464496 7.3:+11161899 MS.gene22376:CDS
ACCTTCGGTGCCTTCGTTGG+TGG 0.466591 7.3:+11162118 MS.gene22376:CDS
CCCTCTGATAGTCCGAATGC+TGG 0.468725 7.3:-11162415 None:intergenic
AAGCTTGTTGTATGCGATAC+CGG 0.471031 7.3:-11161972 None:intergenic
GTCACCTTCGGTGCCTTCGT+TGG 0.471790 7.3:+11162115 MS.gene22376:CDS
GAGGCAGAGATGAGACCGGC+AGG 0.478206 7.3:-11162016 None:intergenic
TCCGTTGGTGCTAACATCTC+CGG 0.479679 7.3:+11162073 MS.gene22376:CDS
ACAATGAAACCAATAGCAAT+TGG 0.481653 7.3:-11162550 None:intergenic
TACATCATCGCTCAACTCCT+CGG 0.483632 7.3:+11162169 MS.gene22376:CDS
GTTACCCTTCTTTGGGTCAA+CGG 0.486754 7.3:-11162512 None:intergenic
GGCAGAGATGAGACCGGCAG+GGG 0.496508 7.3:-11162014 None:intergenic
GTTCATGGATGCTCCGGTAA+AGG 0.500331 7.3:-11162599 None:intergenic
AGAGATGAGACCGGCAGGGG+TGG 0.506184 7.3:-11162011 None:intergenic
CCATCTAGTAGTCAGTAGTT+GGG 0.508206 7.3:-11162762 None:intergenic
CAGCTCCAGCTCACAACAGC+AGG 0.509110 7.3:-11162640 None:intergenic
CAACAAAGAGAGCGAATGCA+TGG 0.509622 7.3:-11162045 None:intergenic
GCAGGCCCGAATGACACTGC+TGG 0.511306 7.3:-11162622 None:intergenic
ACAATCTCCAACACCAAAGC+TGG 0.516165 7.3:-11162451 None:intergenic
GCAATTCCACCACCGATAAG+TGG 0.516249 7.3:-11162691 None:intergenic
TTATCGGTGGTGGAATTGCT+GGG 0.516651 7.3:+11162695 MS.gene22376:CDS
GATTGTGATGACCTTTGGAT+TGG 0.517625 7.3:+11162468 MS.gene22376:CDS
AGCGAATGCATGGGCGATGG+AGG 0.527289 7.3:-11162035 None:intergenic
AAGGCACCGAAGGTGACAGC+GGG 0.529721 7.3:-11162109 None:intergenic
GCTGGCCCACTTATCGGTGG+TGG 0.532535 7.3:+11162685 MS.gene22376:CDS
TCTGGGTGAGTTGCCTCTTG+AGG 0.532672 7.3:-11161884 None:intergenic
AACCAGCTTTCAAGGTGTCT+GGG 0.534447 7.3:-11161901 None:intergenic
AGTAGTTGGGAGCTGCTCAT+GGG 0.538709 7.3:-11162749 None:intergenic
TACAGCCGTTGACCCAAAGA+AGG 0.539491 7.3:+11162507 MS.gene22376:CDS
CTATCAGAGGGAGTTGGAGT+TGG 0.543695 7.3:+11162427 MS.gene22376:CDS
AGTTGGACCAGCTTTGGTGT+TGG 0.548732 7.3:+11162444 MS.gene22376:CDS
ACCGGAGATGTTAGCACCAA+CGG 0.561542 7.3:-11162074 None:intergenic
GAGAGCGAATGCATGGGCGA+TGG 0.568019 7.3:-11162038 None:intergenic
TTCGGACTATCAGAGGGAGT+TGG 0.568192 7.3:+11162421 MS.gene22376:CDS
GATGGAGGCAGAGATGAGAC+CGG 0.570486 7.3:-11162020 None:intergenic
TGTAAACGATACCACGGAGG+AGG 0.570553 7.3:-11162150 None:intergenic
CAGGCCCGAATGACACTGCT+GGG 0.571592 7.3:-11162621 None:intergenic
AGCCCAGTAGACCCAGTGGT+TGG 0.571603 7.3:-11162665 None:intergenic
GAGGAGGGCGGAAGCAACGA+TGG 0.575546 7.3:-11162194 None:intergenic
AGCGGGGTTGACATGTCCAC+CGG 0.585176 7.3:-11162092 None:intergenic
TCCAGCATTCGGACTATCAG+AGG 0.598958 7.3:+11162414 MS.gene22376:CDS
AGGGGTGGCAGCACCGTCGT+TGG 0.600822 7.3:-11161996 None:intergenic
GACCCAAAGAAGGGTAACAT+TGG 0.607785 7.3:+11162517 MS.gene22376:CDS
CGCCGTAGGAACTCCTCAAG+AGG 0.609893 7.3:+11161871 MS.gene22376:CDS
CAATTCCACCACCGATAAGT+GGG 0.611426 7.3:-11162690 None:intergenic
ACCGGCGAAGACAAAGATGA+AGG 0.614054 7.3:-11161942 None:intergenic
ACCACCAACGAAGGCACCGA+AGG 0.616088 7.3:-11162119 None:intergenic
TGCCTCTTGAGGAGTTCCTA+CGG 0.618685 7.3:-11161873 None:intergenic
AACAAAGAGAGCGAATGCAT+GGG 0.618823 7.3:-11162044 None:intergenic
AGGCAGAGATGAGACCGGCA+GGG 0.622500 7.3:-11162015 None:intergenic
AGCGGTAACAAAGACGAGGA+GGG 0.625271 7.3:-11162209 None:intergenic
CGGAAGCAACGATGGATCCG+AGG 0.625561 7.3:-11162186 None:intergenic
ACAGCCGTTGACCCAAAGAA+GGG 0.637474 7.3:+11162508 MS.gene22376:CDS
CCGATCAGAAACATCGCCGT+AGG 0.641211 7.3:+11161857 MS.gene22376:CDS
CACTGTGTACACCAATCCAA+AGG 0.645737 7.3:-11162479 None:intergenic
TGGGCTGGCCCACTTATCGG+TGG 0.647241 7.3:+11162682 MS.gene22376:CDS
CCAGCATTCGGACTATCAGA+GGG 0.651221 7.3:+11162415 MS.gene22376:CDS
AAGCGGTAACAAAGACGAGG+AGG 0.654245 7.3:-11162210 None:intergenic
CCTACGGCGATGTTTCTGAT+CGG 0.655680 7.3:-11161857 None:intergenic
GAAGGCACCGAAGGTGACAG+CGG 0.658097 7.3:-11162110 None:intergenic
GTAAACGATACCACGGAGGA+GGG 0.659135 7.3:-11162149 None:intergenic
GTTGGTGCTAACATCTCCGG+TGG 0.661142 7.3:+11162076 MS.gene22376:CDS
GGCCAGCCCAGTAGACCCAG+TGG 0.666619 7.3:-11162669 None:intergenic
TACAACAAGCTTACCAACGA+CGG 0.666995 7.3:+11161983 MS.gene22376:CDS
GGTAACAAAGACGAGGAGGG+CGG 0.672640 7.3:-11162206 None:intergenic
GGTAACATCACCCTCCTCCG+TGG 0.681289 7.3:+11162139 MS.gene22376:CDS
CCGAAGCGGTAACAAAGACG+AGG 0.684473 7.3:-11162213 None:intergenic
GGTGATGTTACCACCAACGA+AGG 0.686744 7.3:-11162128 None:intergenic
CGAGAAGTATCTTACCGAAG+CGG 0.689056 7.3:-11162227 None:intergenic
CGATGATGTAAACGATACCA+CGG 0.702096 7.3:-11162156 None:intergenic
AGGCACCGAAGGTGACAGCG+GGG 0.759550 7.3:-11162108 None:intergenic
TGATGTAAACGATACCACGG+AGG 0.802444 7.3:-11162153 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
AAATTAAACTCTTGCACGTT+AGG - chr7.3:11162320-11162339 None:intergenic 30.0%
AATTAAACTCTTGCACGTTA+GGG - chr7.3:11162319-11162338 None:intergenic 30.0%
ACAATGAAACCAATAGCAAT+TGG - chr7.3:11162553-11162572 None:intergenic 30.0%
ATTATTGCACCAATTGCTAT+TGG + chr7.3:11162541-11162560 MS.gene22376:CDS 30.0%
!! ATTGCTATTGGTTTCATTGT+TGG + chr7.3:11162553-11162572 MS.gene22376:CDS 30.0%
ATTCCAATGTTACCCTTCTT+TGG - chr7.3:11162523-11162542 None:intergenic 35.0%
TTCCAATGTTACCCTTCTTT+GGG - chr7.3:11162522-11162541 None:intergenic 35.0%
!!! CATTGTTGGTGCTAACATTT+TGG + chr7.3:11162567-11162586 MS.gene22376:CDS 35.0%
AACAAAGAGAGCGAATGCAT+GGG - chr7.3:11162047-11162066 None:intergenic 40.0%
CGATGATGTAAACGATACCA+CGG - chr7.3:11162159-11162178 None:intergenic 40.0%
GATTGTGATGACCTTTGGAT+TGG + chr7.3:11162468-11162487 MS.gene22376:CDS 40.0%
TACAACAAGCTTACCAACGA+CGG + chr7.3:11161983-11162002 MS.gene22376:CDS 40.0%
TTGGAGATTGTGATGACCTT+TGG + chr7.3:11162463-11162482 MS.gene22376:CDS 40.0%
!! AAGCTTGTTGTATGCGATAC+CGG - chr7.3:11161975-11161994 None:intergenic 40.0%
!!! GTTGGTGCTAACATTTTGGT+TGG + chr7.3:11162571-11162590 MS.gene22376:CDS 40.0%
AATTGCTGGGCTTGTCTATG+AGG + chr7.3:11162708-11162727 MS.gene22376:CDS 45.0%
ACAATCTCCAACACCAAAGC+TGG - chr7.3:11162454-11162473 None:intergenic 45.0%
ACCTTCATCTTTGTCTTCGC+CGG + chr7.3:11161941-11161960 MS.gene22376:CDS 45.0%
AGACACCTTGAAAGCTGGTT+TGG + chr7.3:11161904-11161923 MS.gene22376:CDS 45.0%
CAACAAAGAGAGCGAATGCA+TGG - chr7.3:11162048-11162067 None:intergenic 45.0%
CAATTCCACCACCGATAAGT+GGG - chr7.3:11162693-11162712 None:intergenic 45.0%
CACTGTGTACACCAATCCAA+AGG - chr7.3:11162482-11162501 None:intergenic 45.0%
CGCTTCGGTAAGATACTTCT+CGG + chr7.3:11162228-11162247 MS.gene22376:intron 45.0%
GACCCAAAGAAGGGTAACAT+TGG + chr7.3:11162517-11162536 MS.gene22376:CDS 45.0%
GTTACCCTTCTTTGGGTCAA+CGG - chr7.3:11162515-11162534 None:intergenic 45.0%
TACATCATCGCTCAACTCCT+CGG + chr7.3:11162169-11162188 MS.gene22376:CDS 45.0%
TGATGTAAACGATACCACGG+AGG - chr7.3:11162156-11162175 None:intergenic 45.0%
TTGCAGTCTGTTCCAGCATT+CGG + chr7.3:11162403-11162422 MS.gene22376:intron 45.0%
! AAACCAGCTTTCAAGGTGTC+TGG - chr7.3:11161905-11161924 None:intergenic 45.0%
! AACCAGCTTTCAAGGTGTCT+GGG - chr7.3:11161904-11161923 None:intergenic 45.0%
! ATGAACCCAGCAGTGTCATT+CGG + chr7.3:11162616-11162635 MS.gene22376:CDS 45.0%
!! CGAGAAGTATCTTACCGAAG+CGG - chr7.3:11162230-11162249 None:intergenic 45.0%
!! TTATCGGTGGTGGAATTGCT+GGG + chr7.3:11162695-11162714 MS.gene22376:CDS 45.0%
!!! GGTGCTAACATTTTGGTTGG+TGG + chr7.3:11162574-11162593 MS.gene22376:CDS 45.0%
AAGCGGTAACAAAGACGAGG+AGG - chr7.3:11162213-11162232 None:intergenic 50.0%
ACAGCCGTTGACCCAAAGAA+GGG + chr7.3:11162508-11162527 MS.gene22376:CDS 50.0%
ACCGGAGATGTTAGCACCAA+CGG - chr7.3:11162077-11162096 None:intergenic 50.0%
ACCGGCGAAGACAAAGATGA+AGG - chr7.3:11161945-11161964 None:intergenic 50.0%
AGCGGTAACAAAGACGAGGA+GGG - chr7.3:11162212-11162231 None:intergenic 50.0%
AGTAGTTGGGAGCTGCTCAT+GGG - chr7.3:11162752-11162771 None:intergenic 50.0%
AGTTGGAGTTGGACCAGCTT+TGG + chr7.3:11162438-11162457 MS.gene22376:CDS 50.0%
CCAGCATTCGGACTATCAGA+GGG + chr7.3:11162415-11162434 MS.gene22376:CDS 50.0%
CCTCGTCTTTGTTACCGCTT+CGG + chr7.3:11162213-11162232 MS.gene22376:CDS 50.0%
CTATCAGAGGGAGTTGGAGT+TGG + chr7.3:11162427-11162446 MS.gene22376:CDS 50.0%
CTCAGCCAAACCAGCTTTCA+AGG - chr7.3:11161912-11161931 None:intergenic 50.0%
CTCTTTGTTGCTGTCTCCGT+TGG + chr7.3:11162058-11162077 MS.gene22376:CDS 50.0%
GAATGACACTGCTGGGTTCA+TGG - chr7.3:11162617-11162636 None:intergenic 50.0%
GCAATTCCACCACCGATAAG+TGG - chr7.3:11162694-11162713 None:intergenic 50.0%
GGTGATGTTACCACCAACGA+AGG - chr7.3:11162131-11162150 None:intergenic 50.0%
GTAAACGATACCACGGAGGA+GGG - chr7.3:11162152-11162171 None:intergenic 50.0%
GTTCATGGATGCTCCGGTAA+AGG - chr7.3:11162602-11162621 None:intergenic 50.0%
TACAGCCGTTGACCCAAAGA+AGG + chr7.3:11162507-11162526 MS.gene22376:CDS 50.0%
TCCAGCATTCGGACTATCAG+AGG + chr7.3:11162414-11162433 MS.gene22376:CDS 50.0%
TGCCTCTTGAGGAGTTCCTA+CGG - chr7.3:11161876-11161895 None:intergenic 50.0%
TGTAAACGATACCACGGAGG+AGG - chr7.3:11162153-11162172 None:intergenic 50.0%
TTCGGACTATCAGAGGGAGT+TGG + chr7.3:11162421-11162440 MS.gene22376:CDS 50.0%
! AGTTGGACCAGCTTTGGTGT+TGG + chr7.3:11162444-11162463 MS.gene22376:CDS 50.0%
! CCTACGGCGATGTTTCTGAT+CGG - chr7.3:11161860-11161879 None:intergenic 50.0%
! TGAACCCAGCAGTGTCATTC+GGG + chr7.3:11162617-11162636 MS.gene22376:CDS 50.0%
!! ATCTTTGTCTTCGCCGGTTC+AGG + chr7.3:11161947-11161966 MS.gene22376:CDS 50.0%
!! CTTATCGGTGGTGGAATTGC+TGG + chr7.3:11162694-11162713 MS.gene22376:CDS 50.0%
!! TCCGTTGGTGCTAACATCTC+CGG + chr7.3:11162073-11162092 MS.gene22376:CDS 50.0%
!! TTGGTTGGTGGAGCCTTTAC+CGG + chr7.3:11162586-11162605 MS.gene22376:CDS 50.0%
CACCCAGACACCTTGAAAGC+TGG + chr7.3:11161899-11161918 MS.gene22376:CDS 55.0%
CAGTAGTTGGGAGCTGCTCA+TGG - chr7.3:11162753-11162772 None:intergenic 55.0%
CCCTCTGATAGTCCGAATGC+TGG - chr7.3:11162418-11162437 None:intergenic 55.0%
CCGAAGCGGTAACAAAGACG+AGG - chr7.3:11162216-11162235 None:intergenic 55.0%
CCGATCAGAAACATCGCCGT+AGG + chr7.3:11161857-11161876 MS.gene22376:CDS 55.0%
GATGGAGGCAGAGATGAGAC+CGG - chr7.3:11162023-11162042 None:intergenic 55.0%
GGTAACAAAGACGAGGAGGG+CGG - chr7.3:11162209-11162228 None:intergenic 55.0%
GTCCAACCACTGGGTCTACT+GGG + chr7.3:11162663-11162682 MS.gene22376:CDS 55.0%
TCTGGGTGAGTTGCCTCTTG+AGG - chr7.3:11161887-11161906 None:intergenic 55.0%
TGCGATACCGGAACCTGAAC+CGG - chr7.3:11161963-11161982 None:intergenic 55.0%
TGCTGGGTTCATGGATGCTC+CGG - chr7.3:11162608-11162627 None:intergenic 55.0%
!! GTTGGTGCTAACATCTCCGG+TGG + chr7.3:11162076-11162095 MS.gene22376:CDS 55.0%
!! TACTGGGCTGGCCCACTTAT+CGG + chr7.3:11162679-11162698 MS.gene22376:CDS 55.0%
AACCACTGGGTCTACTGGGC+TGG + chr7.3:11162667-11162686 MS.gene22376:CDS 60.0%
AGCCCAGTAGACCCAGTGGT+TGG - chr7.3:11162668-11162687 None:intergenic 60.0%
AGCGAATGCATGGGCGATGG+AGG - chr7.3:11162038-11162057 None:intergenic 60.0%
AGCGGGGTTGACATGTCCAC+CGG - chr7.3:11162095-11162114 None:intergenic 60.0%
AGGCAGAGATGAGACCGGCA+GGG - chr7.3:11162018-11162037 None:intergenic 60.0%
CAGCTCCAGCTCACAACAGC+AGG - chr7.3:11162643-11162662 None:intergenic 60.0%
CAGGCCCGAATGACACTGCT+GGG - chr7.3:11162624-11162643 None:intergenic 60.0%
CGCCGTAGGAACTCCTCAAG+AGG + chr7.3:11161871-11161890 MS.gene22376:CDS 60.0%
CGGAAGCAACGATGGATCCG+AGG - chr7.3:11162189-11162208 None:intergenic 60.0%
CTGCTGTTGTGAGCTGGAGC+TGG + chr7.3:11162641-11162660 MS.gene22376:CDS 60.0%
CTGGAGCTGGTCCAACCACT+GGG + chr7.3:11162654-11162673 MS.gene22376:CDS 60.0%
GAGAGCGAATGCATGGGCGA+TGG - chr7.3:11162041-11162060 None:intergenic 60.0%
GGTAACATCACCCTCCTCCG+TGG + chr7.3:11162139-11162158 MS.gene22376:CDS 60.0%
GGTCCAACCACTGGGTCTAC+TGG + chr7.3:11162662-11162681 MS.gene22376:CDS 60.0%
GTCAACCCCGCTGTCACCTT+CGG + chr7.3:11162103-11162122 MS.gene22376:CDS 60.0%
!! AAGGCACCGAAGGTGACAGC+GGG - chr7.3:11162112-11162131 None:intergenic 60.0%
!! ACCACCAACGAAGGCACCGA+AGG - chr7.3:11162122-11162141 None:intergenic 60.0%
!! ACCTTCGGTGCCTTCGTTGG+TGG + chr7.3:11162118-11162137 MS.gene22376:CDS 60.0%
!! GAAGGCACCGAAGGTGACAG+CGG - chr7.3:11162113-11162132 None:intergenic 60.0%
!! GTCACCTTCGGTGCCTTCGT+TGG + chr7.3:11162115-11162134 MS.gene22376:CDS 60.0%
!! GTCTTCGCCGGTTCAGGTTC+CGG + chr7.3:11161953-11161972 MS.gene22376:CDS 60.0%
AGAGATGAGACCGGCAGGGG+TGG - chr7.3:11162014-11162033 None:intergenic 65.0%
GAGGAGGGCGGAAGCAACGA+TGG - chr7.3:11162197-11162216 None:intergenic 65.0%
GAGGCAGAGATGAGACCGGC+AGG - chr7.3:11162019-11162038 None:intergenic 65.0%
GCAGGCCCGAATGACACTGC+TGG - chr7.3:11162625-11162644 None:intergenic 65.0%
GCTGGAGCTGGTCCAACCAC+TGG + chr7.3:11162653-11162672 MS.gene22376:CDS 65.0%
GCTGGCCCACTTATCGGTGG+TGG + chr7.3:11162685-11162704 MS.gene22376:CDS 65.0%
GGCAGAGATGAGACCGGCAG+GGG - chr7.3:11162017-11162036 None:intergenic 65.0%
TCGGGCCTGCTGTTGTGAGC+TGG + chr7.3:11162635-11162654 MS.gene22376:CDS 65.0%
!! AGGCACCGAAGGTGACAGCG+GGG - chr7.3:11162111-11162130 None:intergenic 65.0%
!! TGGGCTGGCCCACTTATCGG+TGG + chr7.3:11162682-11162701 MS.gene22376:CDS 65.0%
AGGGGTGGCAGCACCGTCGT+TGG - chr7.3:11161999-11162018 None:intergenic 70.0%
GGCCAGCCCAGTAGACCCAG+TGG - chr7.3:11162672-11162691 None:intergenic 70.0%
!! GACGGTGCTGCCACCCCTGC+CGG + chr7.3:11162001-11162020 MS.gene22376:CDS 75.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 11161854 11162780 11161854 ID=MS.gene22376
chr7.3 mRNA 11161854 11162780 11161854 ID=MS.gene22376.t1;Parent=MS.gene22376
chr7.3 exon 11161854 11162234 11161854 ID=MS.gene22376.t1.exon1;Parent=MS.gene22376.t1
chr7.3 CDS 11161854 11162234 11161854 ID=cds.MS.gene22376.t1;Parent=MS.gene22376.t1
chr7.3 exon 11162409 11162780 11162409 ID=MS.gene22376.t1.exon2;Parent=MS.gene22376.t1
chr7.3 CDS 11162409 11162780 11162409 ID=cds.MS.gene22376.t1;Parent=MS.gene22376.t1
Gene Sequence

>MS.gene22376

ATGCCGATCAGAAACATCGCCGTAGGAACTCCTCAAGAGGCAACTCACCCAGACACCTTGAAAGCTGGTTTGGCTGAGTTCATCTCAACCTTCATCTTTGTCTTCGCCGGTTCAGGTTCCGGTATCGCATACAACAAGCTTACCAACGACGGTGCTGCCACCCCTGCCGGTCTCATCTCTGCCTCCATCGCCCATGCATTCGCTCTCTTTGTTGCTGTCTCCGTTGGTGCTAACATCTCCGGTGGACATGTCAACCCCGCTGTCACCTTCGGTGCCTTCGTTGGTGGTAACATCACCCTCCTCCGTGGTATCGTTTACATCATCGCTCAACTCCTCGGATCCATCGTTGCTTCCGCCCTCCTCGTCTTTGTTACCGCTTCGGTAAGATACTTCTCGGAGTTTAATTTTCATACATTATCAGATAATATAATATAAAATAAAGTTAGCTATGTTATTTAGTTACCCTAACGTGCAAGAGTTTAATTTTCATGCAACTTTAATATTTTAATGATCTGACGATTATTGATTGAATATATGAAAATCTTTTGTTTGCAGTCTGTTCCAGCATTCGGACTATCAGAGGGAGTTGGAGTTGGACCAGCTTTGGTGTTGGAGATTGTGATGACCTTTGGATTGGTGTACACAGTGTATGCTACAGCCGTTGACCCAAAGAAGGGTAACATTGGAATTATTGCACCAATTGCTATTGGTTTCATTGTTGGTGCTAACATTTTGGTTGGTGGAGCCTTTACCGGAGCATCCATGAACCCAGCAGTGTCATTCGGGCCTGCTGTTGTGAGCTGGAGCTGGTCCAACCACTGGGTCTACTGGGCTGGCCCACTTATCGGTGGTGGAATTGCTGGGCTTGTCTATGAGGTTCTATTCATCAACAGCACCCATGAGCAGCTCCCAACTACTGACTACTAG
Protein sequence

>MS.gene22376.t1

MPIRNIAVGTPQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALLVFVTASSVPAFGLSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKKGNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVVSWSWSNHWVYWAGPLIGGGIAGLVYEVLFINSTHEQLPTTDY