Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22643.t1 | XP_003600111.1 | 96.9 | 225 | 7 | 0 | 1 | 225 | 1 | 225 | 4.90E-114 | 420.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22643.t1 | Q946Y7 | 67.4 | 227 | 72 | 2 | 1 | 225 | 1 | 227 | 1.2e-76 | 287.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22643.t1 | G7IY20 | 96.9 | 225 | 7 | 0 | 1 | 225 | 1 | 225 | 3.5e-114 | 420.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene44168 | MS.gene22643 | PPI |
| MS.gene056094 | MS.gene22643 | PPI |
| MS.gene072972 | MS.gene22643 | PPI |
| MS.gene22643 | MS.gene056096 | PPI |
| MS.gene22643 | MS.gene78212 | PPI |
| MS.gene40807 | MS.gene22643 | PPI |
| MS.gene22643 | MS.gene063476 | PPI |
| MS.gene65117 | MS.gene22643 | PPI |
| MS.gene013657 | MS.gene22643 | PPI |
| MS.gene02663 | MS.gene22643 | PPI |
| MS.gene22643 | MS.gene005292 | PPI |
| MS.gene66057 | MS.gene22643 | PPI |
| MS.gene033077 | MS.gene22643 | PPI |
| MS.gene22643 | MS.gene044431 | PPI |
| MS.gene052932 | MS.gene22643 | PPI |
| MS.gene44169 | MS.gene22643 | PPI |
| MS.gene22643 | MS.gene69311 | PPI |
| MS.gene77217 | MS.gene22643 | PPI |
| MS.gene22643 | MS.gene81965 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22643.t1 | MTR_3g052210 | 97.119 | 243 | 7 | 0 | 1 | 243 | 1 | 243 | 6.87e-178 | 488 |
| MS.gene22643.t1 | MTR_5g092870 | 77.966 | 236 | 48 | 2 | 1 | 232 | 1 | 236 | 4.07e-134 | 378 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22643.t1 | AT1G28490 | 67.755 | 245 | 77 | 2 | 1 | 243 | 1 | 245 | 3.69e-116 | 332 |
| MS.gene22643.t1 | AT1G28490 | 70.000 | 190 | 56 | 1 | 55 | 243 | 11 | 200 | 1.04e-89 | 263 |
| MS.gene22643.t1 | AT1G28490 | 68.159 | 201 | 58 | 2 | 44 | 243 | 11 | 206 | 2.29e-89 | 263 |
Find 50 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTACGAAGGAGGTTCTTTC+TGG | 0.134337 | 3.4:-49176593 | MS.gene22643:CDS |
| TCTAGTACAACAAGCATTAA+TGG | 0.260115 | 3.4:-49175340 | MS.gene22643:CDS |
| ACTTACAGATTCTTGAATTT+CGG | 0.301091 | 3.4:+49177613 | None:intergenic |
| CATTATCATTGGCAGCATTC+TGG | 0.303561 | 3.4:+49175263 | None:intergenic |
| TTGCTGCCAGAGAACCTTCT+TGG | 0.313236 | 3.4:-49175608 | MS.gene22643:CDS |
| TGATAGAAAGGTGGATGAAT+TGG | 0.324293 | 3.4:-49175646 | MS.gene22643:intron |
| AATGAAATCATCATTATCAT+TGG | 0.404484 | 3.4:+49175252 | None:intergenic |
| CTAGTACAACAAGCATTAAT+GGG | 0.413684 | 3.4:-49175339 | MS.gene22643:CDS |
| CATGATGATACTGGCCTTGT+TGG | 0.423247 | 3.4:-49174160 | MS.gene22643:CDS |
| GGGCCAGATCATGATGATAC+TGG | 0.433608 | 3.4:-49174169 | MS.gene22643:CDS |
| GTTGGATGCATAAGGTTGAT+AGG | 0.437167 | 3.4:+49175285 | None:intergenic |
| CCGGTAGCCTCATTAGTTCT+CGG | 0.445818 | 3.4:+49175311 | None:intergenic |
| GCATTCTGGTTGGATGCATA+AGG | 0.451104 | 3.4:+49175277 | None:intergenic |
| TCGGATTTGACAACGTAGAA+AGG | 0.467631 | 3.4:+49177632 | None:intergenic |
| GACAAGCAGTGCTCGTACTC+AGG | 0.468891 | 3.4:-49175544 | MS.gene22643:intron |
| GCCAAGGAGTTCTTCATGTA+TGG | 0.471199 | 3.4:+49174650 | None:intergenic |
| CTCAAATTCAAACCTGGCCA+AGG | 0.481619 | 3.4:+49174634 | None:intergenic |
| GCCATACCAAGAAGGTTCTC+TGG | 0.485751 | 3.4:+49175602 | None:intergenic |
| TATTTGGGCTGATAGGCAAC+AGG | 0.487675 | 3.4:-49174730 | MS.gene22643:intron |
| CCATAACATGCCCTCAGCTC+AGG | 0.492791 | 3.4:-49177657 | None:intergenic |
| ATGAAGAAAACAGTGGATGC+TGG | 0.500370 | 3.4:-49175370 | MS.gene22643:CDS |
| AGTTTAAGCGTACAAAGAAT+CGG | 0.501912 | 3.4:-49174687 | MS.gene22643:CDS |
| GGCTGATAGGCAACAGGATG+AGG | 0.505234 | 3.4:-49174724 | MS.gene22643:intron |
| AGATTGAAAATCGGAGGAGA+TGG | 0.505923 | 3.4:-49175566 | MS.gene22643:CDS |
| ACAGTAACATTGACTAGGTA+AGG | 0.514747 | 3.4:+49174106 | None:intergenic |
| ACATGAAGAACTCCTTGGCC+AGG | 0.518816 | 3.4:-49174646 | MS.gene22643:intron |
| GCCAGAGAACCTTCTTGGTA+TGG | 0.522757 | 3.4:-49175603 | MS.gene22643:CDS |
| GCATAAGGTTGATAGGAATC+CGG | 0.527293 | 3.4:+49175292 | None:intergenic |
| AGGCCAGTATCATCATGATC+TGG | 0.529006 | 3.4:+49174166 | None:intergenic |
| ATGTGAAAGCGTAGAATGGC+AGG | 0.533008 | 3.4:-49176570 | MS.gene22643:intron |
| ATGATGCTGAGATTGAAAAT+CGG | 0.537272 | 3.4:-49175575 | MS.gene22643:CDS |
| CTGGATGTGAAAGCGTAGAA+TGG | 0.546832 | 3.4:-49176574 | MS.gene22643:CDS |
| ATCATTGGCAGCATTCTGGT+TGG | 0.560569 | 3.4:+49175267 | None:intergenic |
| GAAAAGATTATAGATGAACT+TGG | 0.564446 | 3.4:-49174490 | MS.gene22643:CDS |
| GTACAAAGAATCGGAGGCGT+TGG | 0.564486 | 3.4:-49174678 | MS.gene22643:CDS |
| GAAAATGAACAAGGCCAACA+AGG | 0.572030 | 3.4:+49174146 | None:intergenic |
| ACCATACATGAAGAACTCCT+TGG | 0.572624 | 3.4:-49174651 | MS.gene22643:CDS |
| CCGAGAACTAATGAGGCTAC+CGG | 0.587919 | 3.4:-49175311 | MS.gene22643:CDS |
| GGATGCACCGAGAACTAATG+AGG | 0.594871 | 3.4:-49175318 | MS.gene22643:CDS |
| ATGAAGAAAGCTAGTGCGAA+GGG | 0.599205 | 3.4:-49174189 | MS.gene22643:CDS |
| AGATGAACTTGGTAACGAGA+TGG | 0.600755 | 3.4:-49174479 | MS.gene22643:CDS |
| TCATCAATGCCATACCAAGA+AGG | 0.603070 | 3.4:+49175594 | None:intergenic |
| TAGAAAGGATCCTGAGCTGA+GGG | 0.604695 | 3.4:+49177647 | None:intergenic |
| TATGAAGAAAGCTAGTGCGA+AGG | 0.624609 | 3.4:-49174190 | MS.gene22643:CDS |
| GAAAGTACGTGTTACGAAGG+AGG | 0.625731 | 3.4:-49176603 | MS.gene22643:CDS |
| ATGCTGAGATTGAAAATCGG+AGG | 0.637923 | 3.4:-49175572 | MS.gene22643:CDS |
| GTAGAAAGGATCCTGAGCTG+AGG | 0.654695 | 3.4:+49177646 | None:intergenic |
| TGGCACAATGAAGAAAACAG+TGG | 0.692931 | 3.4:-49175377 | MS.gene22643:CDS |
| AGAGAAAGTACGTGTTACGA+AGG | 0.698114 | 3.4:-49176606 | MS.gene22643:CDS |
| TTAAGCGTACAAAGAATCGG+AGG | 0.705397 | 3.4:-49174684 | MS.gene22643:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATAACCAAAAAATT+AGG | + | chr3.4:49174648-49174667 | None:intergenic | 10.0% |
| !! | AACTAAAATATTAAACAAAA+AGG | + | chr3.4:49177002-49177021 | None:intergenic | 10.0% |
| !! | AATAAATAACCAAAAAATTA+GGG | + | chr3.4:49174647-49174666 | None:intergenic | 10.0% |
| !! | ACTAAAATATTAAACAAAAA+GGG | + | chr3.4:49177001-49177020 | None:intergenic | 10.0% |
| !!! | GATTTATTTTATATCTATTT+GGG | - | chr3.4:49177024-49177043 | MS.gene22643:intron | 10.0% |
| !!! | TGATTTATTTTATATCTATT+TGG | - | chr3.4:49177023-49177042 | MS.gene22643:intron | 10.0% |
| !!! | TTTTATTCAATTTTATTTGA+TGG | - | chr3.4:49174330-49174349 | MS.gene22643:intron | 10.0% |
| !! | AAATACAATACGAAAATTTA+GGG | - | chr3.4:49174942-49174961 | MS.gene22643:intron | 15.0% |
| !! | AAATACAGTATGAAAATTTA+GGG | - | chr3.4:49174793-49174812 | MS.gene22643:intron | 15.0% |
| !! | ATAAATAACCAAAAAATTAG+GGG | + | chr3.4:49174646-49174665 | None:intergenic | 15.0% |
| !! | TAAAAAACATGAAAATACAA+TGG | - | chr3.4:49176921-49176940 | MS.gene22643:intron | 15.0% |
| !!! | AAGCTTTAAAATAACTTAAA+AGG | + | chr3.4:49175381-49175400 | None:intergenic | 15.0% |
| !!! | AGCTTTAAAATAACTTAAAA+GGG | + | chr3.4:49175380-49175399 | None:intergenic | 15.0% |
| !!! | ATTTATTTGATTATGCTTTT+TGG | - | chr3.4:49174660-49174679 | MS.gene22643:CDS | 15.0% |
| !!! | TTTTCATGTTTTTTACATTA+TGG | + | chr3.4:49176916-49176935 | None:intergenic | 15.0% |
| !!! | TTTTGAGTTAAAATTGTTTT+GGG | - | chr3.4:49174816-49174835 | MS.gene22643:intron | 15.0% |
| !! | AAAATAAACCCTATGTAATT+TGG | + | chr3.4:49174207-49174226 | None:intergenic | 20.0% |
| !! | AAATAAACCCTATGTAATTT+GGG | + | chr3.4:49174206-49174225 | None:intergenic | 20.0% |
| !! | AAATGCAATGTGAAAATTTA+GGG | - | chr3.4:49174529-49174548 | MS.gene22643:intron | 20.0% |
| !! | AATACAATACGAAAATTTAG+GGG | - | chr3.4:49174943-49174962 | MS.gene22643:intron | 20.0% |
| !! | AATAGTTTAGAAATTTGTCT+GGG | - | chr3.4:49176946-49176965 | MS.gene22643:intron | 20.0% |
| !! | AATGAAATCATCATTATCAT+TGG | + | chr3.4:49176520-49176539 | None:intergenic | 20.0% |
| !! | AGTTGAAATTGAATGTAAAA+TGG | - | chr3.4:49174970-49174989 | MS.gene22643:intron | 20.0% |
| !! | ATTACATATTAAGTGTTATG+AGG | + | chr3.4:49174262-49174281 | None:intergenic | 20.0% |
| !! | CAATGTTTAATTGATAAGAT+TGG | - | chr3.4:49175014-49175033 | MS.gene22643:intron | 20.0% |
| !! | GAAATACAATACGAAAATTT+AGG | - | chr3.4:49174941-49174960 | MS.gene22643:intron | 20.0% |
| !! | GAAATACAGTATGAAAATTT+AGG | - | chr3.4:49174792-49174811 | MS.gene22643:intron | 20.0% |
| !! | GATTAATAACCAAAGAAATT+AGG | + | chr3.4:49174382-49174401 | None:intergenic | 20.0% |
| !! | GGTATTAAGAATAATAAACT+CGG | + | chr3.4:49175475-49175494 | None:intergenic | 20.0% |
| !! | GTTGAAATTGAATGTAAAAT+GGG | - | chr3.4:49174971-49174990 | MS.gene22643:intron | 20.0% |
| !! | TAAATAACCAAAAAATTAGG+GGG | + | chr3.4:49174645-49174664 | None:intergenic | 20.0% |
| !! | TAAATGCAATGTGAAAATTT+AGG | - | chr3.4:49174528-49174547 | MS.gene22643:intron | 20.0% |
| !! | TGCTAAAAATCCAAAATTTA+TGG | + | chr3.4:49174422-49174441 | None:intergenic | 20.0% |
| !! | TGGAATCAGAAATAAATATA+AGG | - | chr3.4:49176877-49176896 | MS.gene22643:intron | 20.0% |
| !! | TTACATATTAAGTGTTATGA+GGG | + | chr3.4:49174261-49174280 | None:intergenic | 20.0% |
| !! | TTTGGTTATTAATCTGATTA+CGG | - | chr3.4:49174388-49174407 | MS.gene22643:intron | 20.0% |
| !!! | AATTGATTTCCTAATTTCTT+TGG | - | chr3.4:49174370-49174389 | MS.gene22643:intron | 20.0% |
| !!! | AGTATTTTGTTTTGATAGAA+AGG | - | chr3.4:49176111-49176130 | MS.gene22643:intron | 20.0% |
| !!! | ATTTTAAAGCTTACTTTTCT+AGG | - | chr3.4:49175389-49175408 | MS.gene22643:intron | 20.0% |
| !!! | GATTTTTATTCACATTTGTT+TGG | - | chr3.4:49175763-49175782 | MS.gene22643:intron | 20.0% |
| !!! | GTTTTGAGTTAAAATTGTTT+TGG | - | chr3.4:49174815-49174834 | MS.gene22643:intron | 20.0% |
| !!! | TGATGGTTTTATTAGTATTT+GGG | - | chr3.4:49174347-49174366 | MS.gene22643:intron | 20.0% |
| !!! | TTGATGGTTTTATTAGTATT+TGG | - | chr3.4:49174346-49174365 | MS.gene22643:intron | 20.0% |
| !!! | TTTCACATTGCATTTATTTT+CGG | + | chr3.4:49174524-49174543 | None:intergenic | 20.0% |
| ! | AAACAAAATACTTCAGCATT+TGG | + | chr3.4:49176103-49176122 | None:intergenic | 25.0% |
| ! | AATAAACCCTATGTAATTTG+GGG | + | chr3.4:49174205-49174224 | None:intergenic | 25.0% |
| ! | ACTCATATAATCTTGTAAAG+AGG | - | chr3.4:49177509-49177528 | MS.gene22643:intron | 25.0% |
| ! | ACTTACAGATTCTTGAATTT+CGG | + | chr3.4:49174159-49174178 | None:intergenic | 25.0% |
| ! | AGATTACTGTTGTGAAATAA+TGG | - | chr3.4:49177448-49177467 | MS.gene22643:intron | 25.0% |
| ! | ATTAAAACTCATAACTGAGA+TGG | - | chr3.4:49176830-49176849 | MS.gene22643:intron | 25.0% |
| ! | ATTATTCTTAATACCACTGT+TGG | - | chr3.4:49175480-49175499 | MS.gene22643:intron | 25.0% |
| ! | ATTCCATAACGAAAGAAAAA+AGG | + | chr3.4:49176863-49176882 | None:intergenic | 25.0% |
| ! | CAATAGTTTAGAAATTTGTC+TGG | - | chr3.4:49176945-49176964 | MS.gene22643:intron | 25.0% |
| ! | CAATGAATTGGAAAAGAAAA+TGG | + | chr3.4:49176291-49176310 | None:intergenic | 25.0% |
| ! | GAAAAATAGGAAAATGAACA+AGG | + | chr3.4:49177635-49177654 | None:intergenic | 25.0% |
| ! | GAAAAGATTATAGATGAACT+TGG | - | chr3.4:49177279-49177298 | MS.gene22643:intron | 25.0% |
| ! | TAAATTCACAGGTTTCAATT+GGG | + | chr3.4:49174448-49174467 | None:intergenic | 25.0% |
| ! | TAAGGAAGACTAAGAAAAAT+AGG | + | chr3.4:49177648-49177667 | None:intergenic | 25.0% |
| ! | TACATATTAAGTGTTATGAG+GGG | + | chr3.4:49174260-49174279 | None:intergenic | 25.0% |
| ! | TAGATGTGTTAAATAGTCAA+GGG | + | chr3.4:49175603-49175622 | None:intergenic | 25.0% |
| ! | TCAAAGAGAAAATGAAAACT+AGG | + | chr3.4:49177361-49177380 | None:intergenic | 25.0% |
| ! | TGACAAAGACAAAATTACAA+AGG | + | chr3.4:49177218-49177237 | None:intergenic | 25.0% |
| ! | TTAAATTCACAGGTTTCAAT+TGG | + | chr3.4:49174449-49174468 | None:intergenic | 25.0% |
| ! | TTAGATGTGTTAAATAGTCA+AGG | + | chr3.4:49175604-49175623 | None:intergenic | 25.0% |
| ! | TTATTCTTAATACCACTGTT+GGG | - | chr3.4:49175481-49175500 | MS.gene22643:intron | 25.0% |
| ! | TTTAAATTATATCCCAACAG+TGG | + | chr3.4:49175496-49175515 | None:intergenic | 25.0% |
| !! | ATTAATCTGATTACGGTTTT+TGG | - | chr3.4:49174395-49174414 | MS.gene22643:intron | 25.0% |
| !! | CATCTTTCTTTTCTTTACTT+TGG | - | chr3.4:49176619-49176638 | MS.gene22643:CDS | 25.0% |
| !! | GCTAATATTTAGTTCATGTT+TGG | - | chr3.4:49176790-49176809 | MS.gene22643:intron | 25.0% |
| !! | TAATTGATAAGATTGGTTCT+TGG | - | chr3.4:49175021-49175040 | MS.gene22643:intron | 25.0% |
| !! | TTTCTAGGTTCATCTAATTT+TGG | - | chr3.4:49175404-49175423 | MS.gene22643:intron | 25.0% |
| !! | TTTTACATTATGGTTACGTA+AGG | + | chr3.4:49176906-49176925 | None:intergenic | 25.0% |
| !!! | ATTTTGTTTTGATAGAAAGG+TGG | - | chr3.4:49176114-49176133 | MS.gene22643:intron | 25.0% |
| !!! | TTTCCTTTTTTCTTTCGTTA+TGG | - | chr3.4:49176857-49176876 | MS.gene22643:intron | 25.0% |
| !!! | TTTTTTCCCCAAATTACATA+GGG | - | chr3.4:49174196-49174215 | MS.gene22643:CDS | 25.0% |
| !!! | TTTTTTTCCCCAAATTACAT+AGG | - | chr3.4:49174195-49174214 | MS.gene22643:CDS | 25.0% |
| ACAACTACTACACAATGAAT+TGG | + | chr3.4:49176303-49176322 | None:intergenic | 30.0% | |
| ACACATCTAAGTATAACTCA+AGG | - | chr3.4:49175614-49175633 | MS.gene22643:CDS | 30.0% | |
| ACATATTAAGTGTTATGAGG+GGG | + | chr3.4:49174259-49174278 | None:intergenic | 30.0% | |
| AGATGTGTTAAATAGTCAAG+GGG | + | chr3.4:49175602-49175621 | None:intergenic | 30.0% | |
| AGTTTAAGCGTACAAAGAAT+CGG | - | chr3.4:49177082-49177101 | MS.gene22643:intron | 30.0% | |
| ATGATGCTGAGATTGAAAAT+CGG | - | chr3.4:49176194-49176213 | MS.gene22643:intron | 30.0% | |
| ATTAGACAAGCTTAATGCTA+CGG | + | chr3.4:49175912-49175931 | None:intergenic | 30.0% | |
| CAAAATCATACATCACAACT+GGG | + | chr3.4:49174887-49174906 | None:intergenic | 30.0% | |
| CAAATTCACAGATCTCAATT+GGG | + | chr3.4:49174713-49174732 | None:intergenic | 30.0% | |
| CTAGTACAACAAGCATTAAT+GGG | - | chr3.4:49176430-49176449 | MS.gene22643:intron | 30.0% | |
| CTCTCTAAATCTTATGTAAC+TGG | - | chr3.4:49176590-49176609 | MS.gene22643:CDS | 30.0% | |
| CTTGAAAATGCTGTGAATTT+AGG | - | chr3.4:49174283-49174302 | MS.gene22643:intron | 30.0% | |
| TACATAAGATTTAGAGAGAG+AGG | + | chr3.4:49176588-49176607 | None:intergenic | 30.0% | |
| TATGTAGAGTCGTTGAAAAA+TGG | - | chr3.4:49175239-49175258 | MS.gene22643:CDS | 30.0% | |
| TCAAAATCATACATCACAAC+TGG | + | chr3.4:49174888-49174907 | None:intergenic | 30.0% | |
| TCAAATTCACAGATCTCAAT+TGG | + | chr3.4:49174714-49174733 | None:intergenic | 30.0% | |
| TCAAATTTATGCACCAAGAA+TGG | + | chr3.4:49174850-49174869 | None:intergenic | 30.0% | |
| TCAGCATTTGGTTATAGATT+AGG | + | chr3.4:49176091-49176110 | None:intergenic | 30.0% | |
| TCTAAGTATAACTCAAGGAT+AGG | - | chr3.4:49175619-49175638 | MS.gene22643:CDS | 30.0% | |
| TCTAGTACAACAAGCATTAA+TGG | - | chr3.4:49176429-49176448 | MS.gene22643:intron | 30.0% | |
| TGATTCCTTTCTTGCTTAAT+AGG | - | chr3.4:49176368-49176387 | MS.gene22643:intron | 30.0% | |
| TGTCAAAATCTTATTGCTTC+AGG | - | chr3.4:49177257-49177276 | MS.gene22643:intron | 30.0% | |
| TTATATCTATTTGGGCTGAT+AGG | - | chr3.4:49177032-49177051 | MS.gene22643:intron | 30.0% | |
| ! | AGACAAAATTACAAAGGCAT+AGG | + | chr3.4:49177212-49177231 | None:intergenic | 30.0% |
| ! | AGATTTTCCCCCTAATTTTT+TGG | - | chr3.4:49174635-49174654 | MS.gene22643:intron | 30.0% |
| ! | AGCAAAAGTCACTTTAAATG+AGG | + | chr3.4:49176654-49176673 | None:intergenic | 30.0% |
| ! | ATTTTGCTTGCAGAAAAAAG+TGG | - | chr3.4:49177549-49177568 | MS.gene22643:intron | 30.0% |
| ! | TTTAACCAGATTACGCTTTT+TGG | - | chr3.4:49174577-49174596 | MS.gene22643:intron | 30.0% |
| !! | AATGTATGCCCAATTTTAGT+TGG | - | chr3.4:49176255-49176274 | MS.gene22643:intron | 30.0% |
| !! | GCTTTTTGGTGCATAAATTT+GGG | - | chr3.4:49174591-49174610 | MS.gene22643:intron | 30.0% |
| !!! | ATGTATGCCCAATTTTAGTT+GGG | - | chr3.4:49176256-49176275 | MS.gene22643:intron | 30.0% |
| !!! | GAGTTCATTATTGGTTTTGT+AGG | - | chr3.4:49175050-49175069 | MS.gene22643:intron | 30.0% |
| !!! | GGTTTTTGGTCCATAAATTT+TGG | - | chr3.4:49174409-49174428 | MS.gene22643:intron | 30.0% |
| AAAGAGTGAAGAGTTGAGAA+TGG | - | chr3.4:49175787-49175806 | MS.gene22643:intron | 35.0% | |
| AAAGCTCTCAAATTCAAACC+TGG | + | chr3.4:49177144-49177163 | None:intergenic | 35.0% | |
| GATTTGGATAGGAAAGCAAA+GGG | + | chr3.4:49175667-49175686 | None:intergenic | 35.0% | |
| GCATCTTCCCAACTAAAATT+GGG | + | chr3.4:49176266-49176285 | None:intergenic | 35.0% | |
| GTGCAACACTTTAAATTCAC+AGG | + | chr3.4:49174459-49174478 | None:intergenic | 35.0% | |
| TCCTTTCTTGCTTAATAGGT+TGG | - | chr3.4:49176372-49176391 | MS.gene22643:intron | 35.0% | |
| TGATAGAAAGGTGGATGAAT+TGG | - | chr3.4:49176123-49176142 | MS.gene22643:intron | 35.0% | |
| TGCATCTTCCCAACTAAAAT+TGG | + | chr3.4:49176267-49176286 | None:intergenic | 35.0% | |
| TGTGTAATGAATGTAGCCTA+AGG | + | chr3.4:49176005-49176024 | None:intergenic | 35.0% | |
| TGTTAAATAGTCAAGGGGAA+GGG | + | chr3.4:49175597-49175616 | None:intergenic | 35.0% | |
| ! | ACTTTTGGATGGTTTCTGTT+GGG | - | chr3.4:49175329-49175348 | MS.gene22643:CDS | 35.0% |
| ! | TGATAAGATTGGTTCTTGGT+GGG | - | chr3.4:49175025-49175044 | MS.gene22643:intron | 35.0% |
| ! | TTCATATTTTACAGCTTCCC+CGG | + | chr3.4:49175714-49175733 | None:intergenic | 35.0% |
| ! | TTGATAAGATTGGTTCTTGG+TGG | - | chr3.4:49175024-49175043 | MS.gene22643:intron | 35.0% |
| ! | TTGGGATTTGAAACCATTCT+TGG | - | chr3.4:49174834-49174853 | MS.gene22643:intron | 35.0% |
| !! | CGCTTTTTGGTGCATAAATT+TGG | - | chr3.4:49174590-49174609 | MS.gene22643:intron | 35.0% |
| !! | GCTTTTTGGTGCATAAAGTT+GGG | - | chr3.4:49174674-49174693 | MS.gene22643:CDS | 35.0% |
| !! | TGCAATCTACTTTTGAGCAA+TGG | - | chr3.4:49175120-49175139 | MS.gene22643:intron | 35.0% |
| !! | TGCTTTTTGGTGCATAAAGT+TGG | - | chr3.4:49174673-49174692 | MS.gene22643:CDS | 35.0% |
| ACCATACATGAAGAACTCCT+TGG | - | chr3.4:49177118-49177137 | MS.gene22643:intron | 40.0% | |
| ACTAGGTGAAGAAACTCACT+TGG | + | chr3.4:49177344-49177363 | None:intergenic | 40.0% | |
| AGATTGAAAATCGGAGGAGA+TGG | - | chr3.4:49176203-49176222 | MS.gene22643:intron | 40.0% | |
| ATGAAGAAAACAGTGGATGC+TGG | - | chr3.4:49176399-49176418 | MS.gene22643:intron | 40.0% | |
| ATGAAGAAAGCTAGTGCGAA+GGG | - | chr3.4:49177580-49177599 | MS.gene22643:intron | 40.0% | |
| ATGCTGAGATTGAAAATCGG+AGG | - | chr3.4:49176197-49176216 | MS.gene22643:intron | 40.0% | |
| ATTAGTCACACATGCAGACA+CGG | + | chr3.4:49176695-49176714 | None:intergenic | 40.0% | |
| ATTCCATTCTTCGTCCTTCT+CGG | - | chr3.4:49176050-49176069 | MS.gene22643:intron | 40.0% | |
| CACAGAATTAAAGACCGAGA+AGG | + | chr3.4:49176067-49176086 | None:intergenic | 40.0% | |
| CATTATCATTGGCAGCATTC+TGG | + | chr3.4:49176509-49176528 | None:intergenic | 40.0% | |
| CTACACAAGTCCCAAAAATG+CGG | - | chr3.4:49175840-49175859 | MS.gene22643:intron | 40.0% | |
| CTGGGCATACTTATGATTTC+TGG | - | chr3.4:49176964-49176983 | MS.gene22643:intron | 40.0% | |
| CTTCTCGGTCTTTAATTCTG+TGG | - | chr3.4:49176065-49176084 | MS.gene22643:intron | 40.0% | |
| CTTGCAGAAAAAAGTGGCAA+TGG | - | chr3.4:49177555-49177574 | MS.gene22643:intron | 40.0% | |
| GAAAATGAACAAGGCCAACA+AGG | + | chr3.4:49177626-49177645 | None:intergenic | 40.0% | |
| GCCAACCTATTAAGCAAGAA+AGG | + | chr3.4:49176376-49176395 | None:intergenic | 40.0% | |
| GGATTTGGATAGGAAAGCAA+AGG | + | chr3.4:49175668-49175687 | None:intergenic | 40.0% | |
| GTAATGAATGTAGCCTAAGG+TGG | + | chr3.4:49176002-49176021 | None:intergenic | 40.0% | |
| GTGTTAAATAGTCAAGGGGA+AGG | + | chr3.4:49175598-49175617 | None:intergenic | 40.0% | |
| GTTAAATAGTCAAGGGGAAG+GGG | + | chr3.4:49175596-49175615 | None:intergenic | 40.0% | |
| TACACAAGTCCCAAAAATGC+GGG | - | chr3.4:49175841-49175860 | MS.gene22643:intron | 40.0% | |
| TATGAAGAAAGCTAGTGCGA+AGG | - | chr3.4:49177579-49177598 | MS.gene22643:intron | 40.0% | |
| TCATCAATGCCATACCAAGA+AGG | + | chr3.4:49176178-49176197 | None:intergenic | 40.0% | |
| TCGGATTTGACAACGTAGAA+AGG | + | chr3.4:49174140-49174159 | None:intergenic | 40.0% | |
| TGGCACAATGAAGAAAACAG+TGG | - | chr3.4:49176392-49176411 | MS.gene22643:intron | 40.0% | |
| TTAAGCGTACAAAGAATCGG+AGG | - | chr3.4:49177085-49177104 | MS.gene22643:intron | 40.0% | |
| TTGCTTTCCTATCCAAATCC+TGG | - | chr3.4:49175668-49175687 | MS.gene22643:intron | 40.0% | |
| ! | AGAGAAAGTACGTGTTACGA+AGG | - | chr3.4:49175163-49175182 | MS.gene22643:intron | 40.0% |
| ! | ATGCACCAAAAAGCGTAATC+TGG | + | chr3.4:49174585-49174604 | None:intergenic | 40.0% |
| ! | GACTTTTGGATGGTTTCTGT+TGG | - | chr3.4:49175328-49175347 | MS.gene22643:CDS | 40.0% |
| ! | GTTGGATGCATAAGGTTGAT+AGG | + | chr3.4:49176487-49176506 | None:intergenic | 40.0% |
| !! | AGATGAACTTGGTAACGAGA+TGG | - | chr3.4:49177290-49177309 | MS.gene22643:intron | 40.0% |
| !! | GCATAAGGTTGATAGGAATC+CGG | + | chr3.4:49176480-49176499 | None:intergenic | 40.0% |
| !!! | TTTGCATGAGCACTGACTTT+TGG | - | chr3.4:49175314-49175333 | MS.gene22643:CDS | 40.0% |
| AGGCCAGTATCATCATGATC+TGG | + | chr3.4:49177606-49177625 | None:intergenic | 45.0% | |
| ATAGGAAAGCAAAGGGCAAG+AGG | + | chr3.4:49175660-49175679 | None:intergenic | 45.0% | |
| ATCATTGGCAGCATTCTGGT+TGG | + | chr3.4:49176505-49176524 | None:intergenic | 45.0% | |
| CCTAAGGTGGAAAACAGAGT+AGG | + | chr3.4:49175989-49176008 | None:intergenic | 45.0% | |
| CTCAAATTCAAACCTGGCCA+AGG | + | chr3.4:49177138-49177157 | None:intergenic | 45.0% | |
| GCCAAGGAGTTCTTCATGTA+TGG | + | chr3.4:49177122-49177141 | None:intergenic | 45.0% | |
| GGAATCTCCAGGATTTGGAT+AGG | + | chr3.4:49175678-49175697 | None:intergenic | 45.0% | |
| GTCAGTGCTCATGCAAACAA+TGG | + | chr3.4:49175311-49175330 | None:intergenic | 45.0% | |
| GTTACGAAGGAGGTTCTTTC+TGG | - | chr3.4:49175176-49175195 | MS.gene22643:intron | 45.0% | |
| TAGAAAGGATCCTGAGCTGA+GGG | + | chr3.4:49174125-49174144 | None:intergenic | 45.0% | |
| TATTTGGGCTGATAGGCAAC+AGG | - | chr3.4:49177039-49177058 | MS.gene22643:intron | 45.0% | |
| TGGTGGGACGAGTTCATTAT+TGG | - | chr3.4:49175041-49175060 | MS.gene22643:intron | 45.0% | |
| ! | ATGTGAAAGCGTAGAATGGC+AGG | - | chr3.4:49175199-49175218 | MS.gene22643:intron | 45.0% |
| ! | CCTACTCTGTTTTCCACCTT+AGG | - | chr3.4:49175986-49176005 | MS.gene22643:intron | 45.0% |
| ! | CTGGATGTGAAAGCGTAGAA+TGG | - | chr3.4:49175195-49175214 | MS.gene22643:intron | 45.0% |
| ! | GAAAGTACGTGTTACGAAGG+AGG | - | chr3.4:49175166-49175185 | MS.gene22643:intron | 45.0% |
| ! | GCATTCTGGTTGGATGCATA+AGG | + | chr3.4:49176495-49176514 | None:intergenic | 45.0% |
| ! | TTCACTCCACCCGCATTTTT+GGG | + | chr3.4:49175853-49175872 | None:intergenic | 45.0% |
| ! | TTTCACTCCACCCGCATTTT+TGG | + | chr3.4:49175854-49175873 | None:intergenic | 45.0% |
| !! | CATGATGATACTGGCCTTGT+TGG | - | chr3.4:49177609-49177628 | MS.gene22643:intron | 45.0% |
| !!! | CATGAGCACTGACTTTTGGA+TGG | - | chr3.4:49175318-49175337 | MS.gene22643:CDS | 45.0% |
| ACAAGTCCCAAAAATGCGGG+TGG | - | chr3.4:49175844-49175863 | MS.gene22643:intron | 50.0% | |
| ACATGAAGAACTCCTTGGCC+AGG | - | chr3.4:49177123-49177142 | MS.gene22643:intron | 50.0% | |
| AGACCGAGAAGGACGAAGAA+TGG | + | chr3.4:49176056-49176075 | None:intergenic | 50.0% | |
| CCAAATCCTGGAGATTCCCT+GGG | - | chr3.4:49175680-49175699 | MS.gene22643:intron | 50.0% | |
| CCGAGAACTAATGAGGCTAC+CGG | - | chr3.4:49176458-49176477 | MS.gene22643:intron | 50.0% | |
| GCCAGAGAACCTTCTTGGTA+TGG | - | chr3.4:49176166-49176185 | MS.gene22643:intron | 50.0% | |
| GCCATACCAAGAAGGTTCTC+TGG | + | chr3.4:49176170-49176189 | None:intergenic | 50.0% | |
| GGATGCACCGAGAACTAATG+AGG | - | chr3.4:49176451-49176470 | MS.gene22643:intron | 50.0% | |
| GGGCCAGATCATGATGATAC+TGG | - | chr3.4:49177600-49177619 | MS.gene22643:intron | 50.0% | |
| GTAGAAAGGATCCTGAGCTG+AGG | + | chr3.4:49174126-49174145 | None:intergenic | 50.0% | |
| TCCAAATCCTGGAGATTCCC+TGG | - | chr3.4:49175679-49175698 | MS.gene22643:intron | 50.0% | |
| TTGCTGCCAGAGAACCTTCT+TGG | - | chr3.4:49176161-49176180 | MS.gene22643:intron | 50.0% | |
| ! | CCGGTAGCCTCATTAGTTCT+CGG | + | chr3.4:49176461-49176480 | None:intergenic | 50.0% |
| ! | GAAAGCGTAGAATGGCAGGT+AGG | - | chr3.4:49175203-49175222 | MS.gene22643:intron | 50.0% |
| ! | GTACAAAGAATCGGAGGCGT+TGG | - | chr3.4:49177091-49177110 | MS.gene22643:intron | 50.0% |
| AGCATACCCAGGGAATCTCC+AGG | + | chr3.4:49175689-49175708 | None:intergenic | 55.0% | |
| ATTCCCTGGGTATGCTTGCC+GGG | - | chr3.4:49175693-49175712 | MS.gene22643:intron | 55.0% | |
| CCCAGGGAATCTCCAGGATT+TGG | + | chr3.4:49175683-49175702 | None:intergenic | 55.0% | |
| GACAAGCAGTGCTCGTACTC+AGG | - | chr3.4:49176225-49176244 | MS.gene22643:intron | 55.0% | |
| GATTCCCTGGGTATGCTTGC+CGG | - | chr3.4:49175692-49175711 | MS.gene22643:intron | 55.0% | |
| GGCTGATAGGCAACAGGATG+AGG | - | chr3.4:49177045-49177064 | MS.gene22643:intron | 55.0% | |
| TTCCCCGGCAAGCATACCCA+GGG | + | chr3.4:49175699-49175718 | None:intergenic | 60.0% | |
| TTCCCTGGGTATGCTTGCCG+GGG | - | chr3.4:49175694-49175713 | MS.gene22643:intron | 60.0% | |
| CTTCCCCGGCAAGCATACCC+AGG | + | chr3.4:49175700-49175719 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 49174119 | 49177672 | 49174119 | ID=MS.gene22643 |
| chr3.4 | mRNA | 49174119 | 49177672 | 49174119 | ID=MS.gene22643.t1;Parent=MS.gene22643 |
| chr3.4 | exon | 49177619 | 49177672 | 49177619 | ID=MS.gene22643.t1.exon1;Parent=MS.gene22643.t1 |
| chr3.4 | CDS | 49177619 | 49177672 | 49177619 | ID=cds.MS.gene22643.t1;Parent=MS.gene22643.t1 |
| chr3.4 | exon | 49176571 | 49176681 | 49176571 | ID=MS.gene22643.t1.exon2;Parent=MS.gene22643.t1 |
| chr3.4 | CDS | 49176571 | 49176681 | 49176571 | ID=cds.MS.gene22643.t1;Parent=MS.gene22643.t1 |
| chr3.4 | exon | 49175545 | 49175658 | 49175545 | ID=MS.gene22643.t1.exon3;Parent=MS.gene22643.t1 |
| chr3.4 | CDS | 49175545 | 49175658 | 49175545 | ID=cds.MS.gene22643.t1;Parent=MS.gene22643.t1 |
| chr3.4 | exon | 49175217 | 49175401 | 49175217 | ID=MS.gene22643.t1.exon4;Parent=MS.gene22643.t1 |
| chr3.4 | CDS | 49175217 | 49175401 | 49175217 | ID=cds.MS.gene22643.t1;Parent=MS.gene22643.t1 |
| chr3.4 | exon | 49174647 | 49174737 | 49174647 | ID=MS.gene22643.t1.exon5;Parent=MS.gene22643.t1 |
| chr3.4 | CDS | 49174647 | 49174737 | 49174647 | ID=cds.MS.gene22643.t1;Parent=MS.gene22643.t1 |
| chr3.4 | exon | 49174447 | 49174512 | 49174447 | ID=MS.gene22643.t1.exon6;Parent=MS.gene22643.t1 |
| chr3.4 | CDS | 49174447 | 49174512 | 49174447 | ID=cds.MS.gene22643.t1;Parent=MS.gene22643.t1 |
| chr3.4 | exon | 49174119 | 49174229 | 49174119 | ID=MS.gene22643.t1.exon7;Parent=MS.gene22643.t1 |
| chr3.4 | CDS | 49174119 | 49174229 | 49174119 | ID=cds.MS.gene22643.t1;Parent=MS.gene22643.t1 |
| Gene Sequence |
| Protein sequence |
