Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23127.t1 | GAU11476.1 | 87.8 | 319 | 38 | 1 | 1 | 319 | 1 | 318 | 1.60E-168 | 602.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23127.t1 | I6YGS0 | 37.2 | 317 | 185 | 5 | 7 | 316 | 7 | 316 | 4.1e-53 | 209.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23127.t1 | A2Q320 | 85.0 | 319 | 48 | 0 | 1 | 319 | 1 | 319 | 4.1e-163 | 583.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050917 | MS.gene23127 | 0.899323 | 2.22E-77 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene035373 | MS.gene23127 | PPI |
| MS.gene035367 | MS.gene23127 | PPI |
| MS.gene23127 | MS.gene07001 | PPI |
| MS.gene23127 | MS.gene035371 | PPI |
| MS.gene77823 | MS.gene23127 | PPI |
| MS.gene071504 | MS.gene23127 | PPI |
| MS.gene012063 | MS.gene23127 | PPI |
| MS.gene23127 | MS.gene066361 | PPI |
| MS.gene071502 | MS.gene23127 | PPI |
| MS.gene066360 | MS.gene23127 | PPI |
| MS.gene89620 | MS.gene23127 | PPI |
| MS.gene23127 | MS.gene071500 | PPI |
| MS.gene035369 | MS.gene23127 | PPI |
| MS.gene23127 | MS.gene041604 | PPI |
| MS.gene76453 | MS.gene23127 | PPI |
| MS.gene23127 | MS.gene22955 | PPI |
| MS.gene025707 | MS.gene23127 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23127.t1 | MTR_7g113020 | 84.953 | 319 | 48 | 0 | 1 | 319 | 1 | 319 | 0.0 | 569 |
| MS.gene23127.t1 | MTR_7g113050 | 83.072 | 319 | 54 | 0 | 1 | 319 | 1 | 319 | 0.0 | 566 |
| MS.gene23127.t1 | MTR_7g113030 | 82.759 | 319 | 55 | 0 | 1 | 319 | 1 | 319 | 0.0 | 564 |
| MS.gene23127.t1 | MTR_7g112620 | 82.132 | 319 | 57 | 0 | 1 | 319 | 1 | 319 | 0.0 | 560 |
| MS.gene23127.t1 | MTR_7g112615 | 81.505 | 319 | 59 | 0 | 1 | 319 | 1 | 319 | 0.0 | 554 |
| MS.gene23127.t1 | MTR_7g112960 | 72.586 | 321 | 84 | 2 | 1 | 319 | 1 | 319 | 4.16e-178 | 495 |
| MS.gene23127.t1 | MTR_7g112963 | 73.520 | 321 | 81 | 2 | 1 | 319 | 1 | 319 | 1.48e-176 | 491 |
| MS.gene23127.t1 | MTR_4g005160 | 71.207 | 323 | 88 | 3 | 1 | 319 | 1 | 322 | 2.80e-174 | 486 |
| MS.gene23127.t1 | MTR_7g112970 | 71.160 | 319 | 89 | 2 | 1 | 319 | 1 | 316 | 1.05e-173 | 484 |
| MS.gene23127.t1 | MTR_7g113050 | 83.613 | 238 | 39 | 0 | 1 | 238 | 1 | 238 | 1.62e-154 | 432 |
| MS.gene23127.t1 | MTR_7g112615 | 82.353 | 238 | 42 | 0 | 1 | 238 | 1 | 238 | 5.51e-152 | 426 |
| MS.gene23127.t1 | MTR_7g113010 | 71.025 | 283 | 78 | 2 | 1 | 281 | 1 | 281 | 2.96e-147 | 427 |
| MS.gene23127.t1 | MTR_4g120240 | 61.371 | 321 | 120 | 3 | 1 | 319 | 37 | 355 | 7.65e-143 | 407 |
| MS.gene23127.t1 | MTR_7g108825 | 56.740 | 319 | 136 | 2 | 1 | 319 | 1 | 317 | 1.34e-134 | 385 |
| MS.gene23127.t1 | MTR_7g112910 | 71.084 | 249 | 17 | 5 | 72 | 319 | 1 | 195 | 7.69e-113 | 325 |
| MS.gene23127.t1 | MTR_8g076680 | 47.022 | 319 | 165 | 3 | 1 | 319 | 3 | 317 | 4.39e-104 | 307 |
| MS.gene23127.t1 | MTR_7g108825 | 56.723 | 238 | 101 | 2 | 1 | 238 | 1 | 236 | 1.96e-97 | 287 |
| MS.gene23127.t1 | MTR_7g112615 | 81.132 | 159 | 30 | 0 | 1 | 159 | 1 | 159 | 2.73e-95 | 280 |
| MS.gene23127.t1 | MTR_1g083480 | 72.956 | 159 | 39 | 2 | 1 | 156 | 1 | 158 | 2.91e-82 | 246 |
| MS.gene23127.t1 | MTR_8g076680 | 48.319 | 238 | 121 | 2 | 1 | 238 | 3 | 238 | 3.60e-82 | 249 |
| MS.gene23127.t1 | MTR_2g090240 | 37.695 | 321 | 186 | 7 | 1 | 318 | 1 | 310 | 1.49e-67 | 214 |
| MS.gene23127.t1 | MTR_2g090245 | 37.072 | 321 | 188 | 7 | 1 | 318 | 1 | 310 | 7.04e-65 | 207 |
| MS.gene23127.t1 | MTR_4g089060 | 37.072 | 321 | 187 | 6 | 1 | 318 | 1 | 309 | 1.72e-63 | 203 |
| MS.gene23127.t1 | MTR_4g089040 | 35.514 | 321 | 192 | 6 | 1 | 318 | 1 | 309 | 1.14e-60 | 196 |
| MS.gene23127.t1 | MTR_4g089060 | 34.483 | 348 | 186 | 7 | 1 | 318 | 1 | 336 | 2.40e-58 | 191 |
| MS.gene23127.t1 | MTR_4g089060 | 39.914 | 233 | 131 | 3 | 1 | 231 | 1 | 226 | 6.29e-54 | 176 |
| MS.gene23127.t1 | MTR_3g024250 | 72.897 | 107 | 29 | 0 | 46 | 152 | 1 | 107 | 2.50e-53 | 171 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23127.t1 | AT3G05600 | 61.728 | 324 | 119 | 4 | 1 | 319 | 1 | 324 | 5.08e-150 | 424 |
| MS.gene23127.t1 | AT4G02340 | 56.075 | 321 | 134 | 4 | 1 | 319 | 1 | 316 | 5.11e-134 | 384 |
| MS.gene23127.t1 | AT4G15960 | 53.846 | 325 | 143 | 3 | 1 | 319 | 51 | 374 | 5.45e-125 | 363 |
| MS.gene23127.t1 | AT2G26740 | 58.385 | 322 | 127 | 4 | 4 | 319 | 1 | 321 | 1.61e-123 | 357 |
| MS.gene23127.t1 | AT2G26750 | 56.698 | 321 | 133 | 4 | 4 | 319 | 1 | 320 | 1.48e-118 | 344 |
| MS.gene23127.t1 | AT3G05600 | 61.728 | 243 | 88 | 4 | 1 | 238 | 1 | 243 | 4.97e-109 | 317 |
| MS.gene23127.t1 | AT4G15955 | 50.462 | 325 | 125 | 5 | 5 | 319 | 6 | 304 | 2.60e-105 | 310 |
| MS.gene23127.t1 | AT3G51000 | 45.260 | 327 | 158 | 6 | 3 | 319 | 4 | 319 | 1.21e-98 | 294 |
| MS.gene23127.t1 | AT4G15955 | 56.897 | 174 | 65 | 2 | 5 | 168 | 6 | 179 | 2.66e-67 | 209 |
| MS.gene23127.t1 | AT4G15955 | 56.970 | 165 | 61 | 2 | 5 | 159 | 6 | 170 | 3.61e-63 | 198 |
Find 88 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATAGGCTTTGACTCTTTC+AGG | 0.142456 | 7.2:+4193915 | None:intergenic |
| CTACTATATCTGCAGATTTC+AGG | 0.187669 | 7.2:-4193814 | MS.gene23127:intron |
| CATGATTGGGGTGCCTTAAT+TGG | 0.213822 | 7.2:-4193960 | MS.gene23127:CDS |
| TTCATGGCTTCCCCGAATTC+TGG | 0.240616 | 7.2:-4194169 | MS.gene23127:CDS |
| CCAGTAGTCTTGTTCCTTCA+TGG | 0.244564 | 7.2:-4194185 | MS.gene23127:CDS |
| TCTTTCTTGTTGCTCATGAT+TGG | 0.261993 | 7.2:-4193974 | MS.gene23127:CDS |
| GTCATAGGAACCAGGTAAAA+TGG | 0.282976 | 7.2:-4193670 | MS.gene23127:intron |
| CTTTCTTGTTGCTCATGATT+GGG | 0.285427 | 7.2:-4193973 | MS.gene23127:CDS |
| AGCCAAGAGGGCAAGGTGTC+AGG | 0.303963 | 7.2:+4193528 | None:intergenic |
| CCCCTGACACCTTGCCCTCT+TGG | 0.306808 | 7.2:-4193530 | MS.gene23127:CDS |
| GAGGAAGTGATTGTACAAAA+AGG | 0.317571 | 7.2:-4193179 | MS.gene23127:CDS |
| ACAAAGATACCAACCAATTA+AGG | 0.323697 | 7.2:+4193947 | None:intergenic |
| GTCTCTAAATTTGACAAAAC+AGG | 0.325042 | 7.2:-4193480 | MS.gene23127:CDS |
| CGCCATGAGTACCAGAATTC+GGG | 0.327788 | 7.2:+4194158 | None:intergenic |
| AAAATGCATATAGCAGAAAA+AGG | 0.330788 | 7.2:-4194218 | MS.gene23127:CDS |
| ATCCTCACAACACGGAAAAT+TGG | 0.340437 | 7.2:-4193603 | MS.gene23127:CDS |
| GGCAAGGTGTCAGGGGTATC+CGG | 0.344243 | 7.2:+4193537 | None:intergenic |
| TACGTAGAAACCCAAATAAA+AGG | 0.378449 | 7.2:-4193872 | MS.gene23127:CDS |
| GCGCCATGAGTACCAGAATT+CGG | 0.384499 | 7.2:+4194157 | None:intergenic |
| ATGGCACCGATTAGAACTTC+AGG | 0.384870 | 7.2:+4193093 | None:intergenic |
| GCTCCCGATCTCCGTGGCTT+TGG | 0.388680 | 7.2:-4194092 | MS.gene23127:CDS |
| GTGCCAGTGAAATTCATTAC+AGG | 0.390811 | 7.2:-4193284 | MS.gene23127:CDS |
| TTTGACAAAACAGGCTTCAC+TGG | 0.391236 | 7.2:-4193471 | MS.gene23127:CDS |
| ACAATCACTTCCTCTAAATT+CGG | 0.394533 | 7.2:+4193188 | None:intergenic |
| CACAGAACAGTGGAAGTTAA+TGG | 0.407984 | 7.2:-4194245 | MS.gene23127:CDS |
| CTGCTTCTTGATTATTAAAG+TGG | 0.408460 | 7.2:+4193150 | None:intergenic |
| TACACAATCTTCCACTTAGT+TGG | 0.410078 | 7.2:-4194038 | MS.gene23127:CDS |
| TTTCTTTGTTTGCAGACTCT+GGG | 0.430512 | 7.2:-4193342 | MS.gene23127:intron |
| CCAGTTCCGTACTCGCCGTT+GGG | 0.435012 | 7.2:+4193567 | None:intergenic |
| GTCTCCAAAGCCACGGAGAT+CGG | 0.447397 | 7.2:+4194088 | None:intergenic |
| CATTACAGGTGAGCTAGATA+TGG | 0.453391 | 7.2:-4193270 | MS.gene23127:CDS |
| TCTCCAAAGCCACGGAGATC+GGG | 0.455811 | 7.2:+4194089 | None:intergenic |
| GGAAGATGTGCCGAATTTAG+AGG | 0.457691 | 7.2:-4193198 | MS.gene23127:CDS |
| GGGAACTGAGGGCCACAATC+TGG | 0.459581 | 7.2:+4194132 | None:intergenic |
| CCCAACGGCGAGTACGGAAC+TGG | 0.466545 | 7.2:-4193567 | MS.gene23127:CDS |
| TACTCGCCGTTGGGAAGTAT+TGG | 0.482139 | 7.2:+4193576 | None:intergenic |
| ATACTTCCCAACGGCGAGTA+CGG | 0.483099 | 7.2:-4193573 | MS.gene23127:CDS |
| GCCAAGAGGGCAAGGTGTCA+GGG | 0.488708 | 7.2:+4193529 | None:intergenic |
| GATCACTTGCGTGATGTGTA+TGG | 0.490923 | 7.2:-4193843 | MS.gene23127:CDS |
| GCAAGGTGTCAGGGGTATCC+GGG | 0.499424 | 7.2:+4193538 | None:intergenic |
| TTTCTTGTTGCTCATGATTG+GGG | 0.508757 | 7.2:-4193972 | MS.gene23127:CDS |
| ATTTGGGTTTCTACGTAGGA+AGG | 0.512776 | 7.2:+4193878 | None:intergenic |
| TATACATGGAGGAGGAATGA+AGG | 0.514026 | 7.2:-4193219 | MS.gene23127:CDS |
| GAGCTCACAGCTCCATGGAC+CGG | 0.516623 | 7.2:-4193320 | MS.gene23127:CDS |
| GCCACGGAGATCGGGAGCTA+CGG | 0.522060 | 7.2:+4194097 | None:intergenic |
| TCCCCGAATTCTGGTACTCA+TGG | 0.526482 | 7.2:-4194160 | MS.gene23127:CDS |
| ATTGGGGTGCCTTAATTGGT+TGG | 0.526960 | 7.2:-4193956 | MS.gene23127:CDS |
| TCCAGTTCCGTACTCGCCGT+TGG | 0.531974 | 7.2:+4193566 | None:intergenic |
| TTCTGTAAGCCAAGAGGGCA+AGG | 0.536914 | 7.2:+4193521 | None:intergenic |
| CTCATGGCGCCACCAGATTG+TGG | 0.538156 | 7.2:-4194144 | MS.gene23127:CDS |
| CAACGATATCACCAACTAAG+TGG | 0.540284 | 7.2:+4194027 | None:intergenic |
| GAGCTACGGCGTGGTAGCCG+AGG | 0.552775 | 7.2:+4194111 | None:intergenic |
| TCGCCGTTGGGAAGTATTGG+AGG | 0.556206 | 7.2:+4193579 | None:intergenic |
| GTGTAGTTGCTTATTGAAGT+GGG | 0.557721 | 7.2:+4194056 | None:intergenic |
| AGAATTCGGGGAAGCCATGA+AGG | 0.558750 | 7.2:+4194171 | None:intergenic |
| TCACCTGTAATGAATTTCAC+TGG | 0.565006 | 7.2:+4193281 | None:intergenic |
| CCATGAAGGAACAAGACTAC+TGG | 0.567142 | 7.2:+4194185 | None:intergenic |
| TCTGGGAGCTCACAGCTCCA+TGG | 0.570609 | 7.2:-4193325 | MS.gene23127:CDS |
| TGATCCATGTCATAGGAACC+AGG | 0.570861 | 7.2:-4193678 | MS.gene23127:intron |
| TTTGGGTTTCTACGTAGGAA+GGG | 0.576884 | 7.2:+4193879 | None:intergenic |
| GGGACTACTAAGACAAACAT+AGG | 0.582812 | 7.2:+4193899 | None:intergenic |
| TCGTCTTCTGTAAGCCAAGA+GGG | 0.589343 | 7.2:+4193516 | None:intergenic |
| GAAGCTGAGATTGCTGAAGT+TGG | 0.590696 | 7.2:-4193648 | MS.gene23127:CDS |
| GGCATGAAGGAGTATATACA+TGG | 0.590893 | 7.2:-4193233 | MS.gene23127:CDS |
| TGTGTAGTTGCTTATTGAAG+TGG | 0.591667 | 7.2:+4194055 | None:intergenic |
| AAGGAGTATATACATGGAGG+AGG | 0.594079 | 7.2:-4193227 | MS.gene23127:CDS |
| GACAAAACAGGCTTCACTGG+AGG | 0.595419 | 7.2:-4193468 | MS.gene23127:CDS |
| AGCTACGGCGTGGTAGCCGA+GGG | 0.595559 | 7.2:+4194112 | None:intergenic |
| GATATGGTGTACACTTCGCT+AGG | 0.598016 | 7.2:-4193254 | MS.gene23127:CDS |
| ATTTAGAGACAAAGTAAGCA+AGG | 0.606314 | 7.2:+4193493 | None:intergenic |
| CGTGGTAGCCGAGGGAACTG+AGG | 0.611603 | 7.2:+4194120 | None:intergenic |
| GTGGTAGCCGAGGGAACTGA+GGG | 0.612520 | 7.2:+4194121 | None:intergenic |
| ATTGTGGCCCTCAGTTCCCT+CGG | 0.614475 | 7.2:-4194128 | MS.gene23127:CDS |
| AACTGAGGGCCACAATCTGG+TGG | 0.616466 | 7.2:+4194135 | None:intergenic |
| GTACACTTCGCTAGGCATGA+AGG | 0.627184 | 7.2:-4193246 | MS.gene23127:CDS |
| CCAAGAGGGCAAGGTGTCAG+GGG | 0.630193 | 7.2:+4193530 | None:intergenic |
| CATCACTGTCTCCAAAGCCA+CGG | 0.638680 | 7.2:+4194081 | None:intergenic |
| ATGGACCGGAGTGAAAACCT+TGG | 0.641351 | 7.2:-4193306 | MS.gene23127:CDS |
| GTTGCTCTCATAGACTCACT+TGG | 0.649822 | 7.2:-4194008 | MS.gene23127:CDS |
| AATGAATTTCACTGGCACCA+AGG | 0.651882 | 7.2:+4193289 | None:intergenic |
| GTCGTCTTCTGTAAGCCAAG+AGG | 0.663533 | 7.2:+4193515 | None:intergenic |
| GGTCCTCCAATACTTCCCAA+CGG | 0.688968 | 7.2:-4193582 | MS.gene23127:CDS |
| GGAGATCGGGAGCTACGGCG+TGG | 0.695350 | 7.2:+4194102 | None:intergenic |
| GCCATGAGTACCAGAATTCG+GGG | 0.700987 | 7.2:+4194159 | None:intergenic |
| AGGCATAGAACACAGAACAG+TGG | 0.709768 | 7.2:-4194255 | MS.gene23127:CDS |
| GCCGTAGCTCCCGATCTCCG+TGG | 0.712868 | 7.2:-4194098 | MS.gene23127:CDS |
| GTACGGAACTGGATTCAACC+CGG | 0.719164 | 7.2:-4193556 | MS.gene23127:CDS |
| ATGAAGGAGTATATACATGG+AGG | 0.728089 | 7.2:-4193230 | MS.gene23127:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTACTTTAATGAATGAT+TGG | - | chr7.2:4193644-4193663 | MS.gene23127:CDS | 15.0% |
| !!! | GATAATCAAATTTTCATTTA+GGG | - | chr7.2:4193973-4193992 | MS.gene23127:CDS | 15.0% |
| !!! | GGATAATCAAATTTTCATTT+AGG | - | chr7.2:4193972-4193991 | MS.gene23127:CDS | 20.0% |
| !!! | TTTGAAATATGATCATATAG+AGG | + | chr7.2:4193591-4193610 | None:intergenic | 20.0% |
| ! | AAAATGCATATAGCAGAAAA+AGG | - | chr7.2:4193145-4193164 | MS.gene23127:CDS | 25.0% |
| ! | ATGAAAATTTGATTATCCCA+AGG | + | chr7.2:4193970-4193989 | None:intergenic | 25.0% |
| !! | TGATCTATGATCCTTTTATT+TGG | + | chr7.2:4193505-4193524 | None:intergenic | 25.0% |
| !!! | GATCTATGATCCTTTTATTT+GGG | + | chr7.2:4193504-4193523 | None:intergenic | 25.0% |
| AAATATGATCATATAGAGGC+TGG | + | chr7.2:4193587-4193606 | None:intergenic | 30.0% | |
| ACAAAGATACCAACCAATTA+AGG | + | chr7.2:4193419-4193438 | None:intergenic | 30.0% | |
| ACAATCACTTCCTCTAAATT+CGG | + | chr7.2:4194178-4194197 | None:intergenic | 30.0% | |
| ATAGCAGAAAAAGGAAAAGA+GGG | - | chr7.2:4193154-4193173 | MS.gene23127:CDS | 30.0% | |
| ATTTAGAGACAAAGTAAGCA+AGG | + | chr7.2:4193873-4193892 | None:intergenic | 30.0% | |
| CTGCTTCTTGATTATTAAAG+TGG | + | chr7.2:4194216-4194235 | None:intergenic | 30.0% | |
| GTCTCTAAATTTGACAAAAC+AGG | - | chr7.2:4193883-4193902 | MS.gene23127:CDS | 30.0% | |
| TACGTAGAAACCCAAATAAA+AGG | - | chr7.2:4193491-4193510 | MS.gene23127:CDS | 30.0% | |
| TATAGCAGAAAAAGGAAAAG+AGG | - | chr7.2:4193153-4193172 | MS.gene23127:CDS | 30.0% | |
| TGAAAAATATCCTCACAACA+CGG | - | chr7.2:4193752-4193771 | MS.gene23127:intron | 30.0% | |
| !! | GATATTTTTCAGCACATAAG+CGG | + | chr7.2:4193743-4193762 | None:intergenic | 30.0% |
| !! | TTTTATTTGGGTTTCTACGT+AGG | + | chr7.2:4193492-4193511 | None:intergenic | 30.0% |
| !!! | TTGTTTTTGATCCATGTCAT+AGG | - | chr7.2:4193678-4193697 | MS.gene23127:intron | 30.0% |
| CTACTATATCTGCAGATTTC+AGG | - | chr7.2:4193549-4193568 | MS.gene23127:CDS | 35.0% | |
| CTTTCTTGTTGCTCATGATT+GGG | - | chr7.2:4193390-4193409 | MS.gene23127:intron | 35.0% | |
| GAGGAAGTGATTGTACAAAA+AGG | - | chr7.2:4194184-4194203 | MS.gene23127:CDS | 35.0% | |
| GTGTAGTTGCTTATTGAAGT+GGG | + | chr7.2:4193310-4193329 | None:intergenic | 35.0% | |
| TACACAATCTTCCACTTAGT+TGG | - | chr7.2:4193325-4193344 | MS.gene23127:CDS | 35.0% | |
| TCACCTGTAATGAATTTCAC+TGG | + | chr7.2:4194085-4194104 | None:intergenic | 35.0% | |
| TCTTTCTTGTTGCTCATGAT+TGG | - | chr7.2:4193389-4193408 | MS.gene23127:intron | 35.0% | |
| TGTGTAGTTGCTTATTGAAG+TGG | + | chr7.2:4193311-4193330 | None:intergenic | 35.0% | |
| TTTCTTGTTGCTCATGATTG+GGG | - | chr7.2:4193391-4193410 | MS.gene23127:intron | 35.0% | |
| ! | ATGAAGGAGTATATACATGG+AGG | - | chr7.2:4194133-4194152 | MS.gene23127:CDS | 35.0% |
| ! | TTTCTTTGTTTGCAGACTCT+GGG | - | chr7.2:4194021-4194040 | MS.gene23127:CDS | 35.0% |
| AATGAATTTCACTGGCACCA+AGG | + | chr7.2:4194077-4194096 | None:intergenic | 40.0% | |
| ACAAACAATCAGAGAGCTAC+AGG | + | chr7.2:4193945-4193964 | None:intergenic | 40.0% | |
| ATCCTCACAACACGGAAAAT+TGG | - | chr7.2:4193760-4193779 | MS.gene23127:intron | 40.0% | |
| CAACGATATCACCAACTAAG+TGG | + | chr7.2:4193339-4193358 | None:intergenic | 40.0% | |
| CACAGAACAGTGGAAGTTAA+TGG | - | chr7.2:4193118-4193137 | MS.gene23127:CDS | 40.0% | |
| CATTACAGGTGAGCTAGATA+TGG | - | chr7.2:4194093-4194112 | MS.gene23127:CDS | 40.0% | |
| CTCTGATTGTTTGTCTCCTT+GGG | - | chr7.2:4193951-4193970 | MS.gene23127:CDS | 40.0% | |
| GGGACTACTAAGACAAACAT+AGG | + | chr7.2:4193467-4193486 | None:intergenic | 40.0% | |
| GTCATAGGAACCAGGTAAAA+TGG | - | chr7.2:4193693-4193712 | MS.gene23127:intron | 40.0% | |
| GTGATTGTACAAAAAGGAGC+TGG | - | chr7.2:4194190-4194209 | MS.gene23127:CDS | 40.0% | |
| GTGCCAGTGAAATTCATTAC+AGG | - | chr7.2:4194079-4194098 | MS.gene23127:CDS | 40.0% | |
| TATACATGGAGGAGGAATGA+AGG | - | chr7.2:4194144-4194163 | MS.gene23127:CDS | 40.0% | |
| TCTCTGATTGTTTGTCTCCT+TGG | - | chr7.2:4193950-4193969 | MS.gene23127:CDS | 40.0% | |
| TTTACCTGGTTCCTATGACA+TGG | + | chr7.2:4193692-4193711 | None:intergenic | 40.0% | |
| TTTGACAAAACAGGCTTCAC+TGG | - | chr7.2:4193892-4193911 | MS.gene23127:CDS | 40.0% | |
| ! | AAGGAGTATATACATGGAGG+AGG | - | chr7.2:4194136-4194155 | MS.gene23127:CDS | 40.0% |
| ! | ACATAGGCTTTGACTCTTTC+AGG | + | chr7.2:4193451-4193470 | None:intergenic | 40.0% |
| ! | ATCTCAGCTTCCATTTTACC+TGG | + | chr7.2:4193706-4193725 | None:intergenic | 40.0% |
| ! | ATTTGGGTTTCTACGTAGGA+AGG | + | chr7.2:4193488-4193507 | None:intergenic | 40.0% |
| ! | GGCATGAAGGAGTATATACA+TGG | - | chr7.2:4194130-4194149 | MS.gene23127:CDS | 40.0% |
| ! | GTTTCTTTGTTTGCAGACTC+TGG | - | chr7.2:4194020-4194039 | MS.gene23127:CDS | 40.0% |
| ! | TTTGGGTTTCTACGTAGGAA+GGG | + | chr7.2:4193487-4193506 | None:intergenic | 40.0% |
| AGGCATAGAACACAGAACAG+TGG | - | chr7.2:4193108-4193127 | MS.gene23127:CDS | 45.0% | |
| CCATGAAGGAACAAGACTAC+TGG | + | chr7.2:4193181-4193200 | None:intergenic | 45.0% | |
| GAAGCTGAGATTGCTGAAGT+TGG | - | chr7.2:4193715-4193734 | MS.gene23127:intron | 45.0% | |
| GATATGGTGTACACTTCGCT+AGG | - | chr7.2:4194109-4194128 | MS.gene23127:CDS | 45.0% | |
| GATCACTTGCGTGATGTGTA+TGG | - | chr7.2:4193520-4193539 | MS.gene23127:CDS | 45.0% | |
| GGAAGATGTGCCGAATTTAG+AGG | - | chr7.2:4194165-4194184 | MS.gene23127:CDS | 45.0% | |
| GTTGCTCTCATAGACTCACT+TGG | - | chr7.2:4193355-4193374 | MS.gene23127:intron | 45.0% | |
| TCGTCTTCTGTAAGCCAAGA+GGG | + | chr7.2:4193850-4193869 | None:intergenic | 45.0% | |
| TGATCCATGTCATAGGAACC+AGG | - | chr7.2:4193685-4193704 | MS.gene23127:intron | 45.0% | |
| ! | ATTGGGGTGCCTTAATTGGT+TGG | - | chr7.2:4193407-4193426 | MS.gene23127:intron | 45.0% |
| ! | CATGATTGGGGTGCCTTAAT+TGG | - | chr7.2:4193403-4193422 | MS.gene23127:intron | 45.0% |
| ! | GACCAATTTTCCGTGTTGTG+AGG | + | chr7.2:4193765-4193784 | None:intergenic | 45.0% |
| !! | CCAGTAGTCTTGTTCCTTCA+TGG | - | chr7.2:4193178-4193197 | MS.gene23127:CDS | 45.0% |
| AGAATTCGGGGAAGCCATGA+AGG | + | chr7.2:4193195-4193214 | None:intergenic | 50.0% | |
| ATACTTCCCAACGGCGAGTA+CGG | - | chr7.2:4193790-4193809 | MS.gene23127:intron | 50.0% | |
| ATGGACCGGAGTGAAAACCT+TGG | - | chr7.2:4194057-4194076 | MS.gene23127:CDS | 50.0% | |
| CATCACTGTCTCCAAAGCCA+CGG | + | chr7.2:4193285-4193304 | None:intergenic | 50.0% | |
| CGCCATGAGTACCAGAATTC+GGG | + | chr7.2:4193208-4193227 | None:intergenic | 50.0% | |
| GACAAAACAGGCTTCACTGG+AGG | - | chr7.2:4193895-4193914 | MS.gene23127:CDS | 50.0% | |
| GCCATGAGTACCAGAATTCG+GGG | + | chr7.2:4193207-4193226 | None:intergenic | 50.0% | |
| GCGCCATGAGTACCAGAATT+CGG | + | chr7.2:4193209-4193228 | None:intergenic | 50.0% | |
| GGTCCTCCAATACTTCCCAA+CGG | - | chr7.2:4193781-4193800 | MS.gene23127:intron | 50.0% | |
| GTACACTTCGCTAGGCATGA+AGG | - | chr7.2:4194117-4194136 | MS.gene23127:CDS | 50.0% | |
| GTACGGAACTGGATTCAACC+CGG | - | chr7.2:4193807-4193826 | MS.gene23127:intron | 50.0% | |
| GTCGTCTTCTGTAAGCCAAG+AGG | + | chr7.2:4193851-4193870 | None:intergenic | 50.0% | |
| TCCCCGAATTCTGGTACTCA+TGG | - | chr7.2:4193203-4193222 | MS.gene23127:CDS | 50.0% | |
| TTCATGGCTTCCCCGAATTC+TGG | - | chr7.2:4193194-4193213 | MS.gene23127:CDS | 50.0% | |
| TTCTGTAAGCCAAGAGGGCA+AGG | + | chr7.2:4193845-4193864 | None:intergenic | 50.0% | |
| ! | AAGGTTTTCACTCCGGTCCA+TGG | + | chr7.2:4194058-4194077 | None:intergenic | 50.0% |
| ! | TACTCGCCGTTGGGAAGTAT+TGG | + | chr7.2:4193790-4193809 | None:intergenic | 50.0% |
| ! | TGGCACCAAGGTTTTCACTC+CGG | + | chr7.2:4194065-4194084 | None:intergenic | 50.0% |
| AACTGAGGGCCACAATCTGG+TGG | + | chr7.2:4193231-4193250 | None:intergenic | 55.0% | |
| ATTGTGGCCCTCAGTTCCCT+CGG | - | chr7.2:4193235-4193254 | MS.gene23127:CDS | 55.0% | |
| GTCTCCAAAGCCACGGAGAT+CGG | + | chr7.2:4193278-4193297 | None:intergenic | 55.0% | |
| TCTCCAAAGCCACGGAGATC+GGG | + | chr7.2:4193277-4193296 | None:intergenic | 55.0% | |
| !! | TCGCCGTTGGGAAGTATTGG+AGG | + | chr7.2:4193787-4193806 | None:intergenic | 55.0% |
| CCAGTTCCGTACTCGCCGTT+GGG | + | chr7.2:4193799-4193818 | None:intergenic | 60.0% | |
| CTCATGGCGCCACCAGATTG+TGG | - | chr7.2:4193219-4193238 | MS.gene23127:CDS | 60.0% | |
| GAGCTCACAGCTCCATGGAC+CGG | - | chr7.2:4194043-4194062 | MS.gene23127:CDS | 60.0% | |
| GGGAACTGAGGGCCACAATC+TGG | + | chr7.2:4193234-4193253 | None:intergenic | 60.0% | |
| GTGGTAGCCGAGGGAACTGA+GGG | + | chr7.2:4193245-4193264 | None:intergenic | 60.0% | |
| TCCAGTTCCGTACTCGCCGT+TGG | + | chr7.2:4193800-4193819 | None:intergenic | 60.0% | |
| TCTGGGAGCTCACAGCTCCA+TGG | - | chr7.2:4194038-4194057 | MS.gene23127:CDS | 60.0% | |
| ! | AGCCAAGAGGGCAAGGTGTC+AGG | + | chr7.2:4193838-4193857 | None:intergenic | 60.0% |
| ! | CCAAGAGGGCAAGGTGTCAG+GGG | + | chr7.2:4193836-4193855 | None:intergenic | 60.0% |
| ! | GCCAAGAGGGCAAGGTGTCA+GGG | + | chr7.2:4193837-4193856 | None:intergenic | 60.0% |
| !! | GCAAGGTGTCAGGGGTATCC+GGG | + | chr7.2:4193828-4193847 | None:intergenic | 60.0% |
| !! | GGCAAGGTGTCAGGGGTATC+CGG | + | chr7.2:4193829-4193848 | None:intergenic | 60.0% |
| AGCTACGGCGTGGTAGCCGA+GGG | + | chr7.2:4193254-4193273 | None:intergenic | 65.0% | |
| CCCAACGGCGAGTACGGAAC+TGG | - | chr7.2:4193796-4193815 | MS.gene23127:intron | 65.0% | |
| CCCCTGACACCTTGCCCTCT+TGG | - | chr7.2:4193833-4193852 | MS.gene23127:CDS | 65.0% | |
| CGTGGTAGCCGAGGGAACTG+AGG | + | chr7.2:4193246-4193265 | None:intergenic | 65.0% | |
| GCCACGGAGATCGGGAGCTA+CGG | + | chr7.2:4193269-4193288 | None:intergenic | 65.0% | |
| GCTCCCGATCTCCGTGGCTT+TGG | - | chr7.2:4193271-4193290 | MS.gene23127:CDS | 65.0% | |
| GAGCTACGGCGTGGTAGCCG+AGG | + | chr7.2:4193255-4193274 | None:intergenic | 70.0% | |
| GCCGTAGCTCCCGATCTCCG+TGG | - | chr7.2:4193265-4193284 | MS.gene23127:CDS | 70.0% | |
| GGAGATCGGGAGCTACGGCG+TGG | + | chr7.2:4193264-4193283 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 4193103 | 4194282 | 4193103 | ID=MS.gene23127 |
| chr7.2 | mRNA | 4193103 | 4194282 | 4193103 | ID=MS.gene23127.t1;Parent=MS.gene23127 |
| chr7.2 | exon | 4193815 | 4194282 | 4193815 | ID=MS.gene23127.t1.exon1;Parent=MS.gene23127.t1 |
| chr7.2 | CDS | 4193815 | 4194282 | 4193815 | ID=cds.MS.gene23127.t1;Parent=MS.gene23127.t1 |
| chr7.2 | exon | 4193441 | 4193685 | 4193441 | ID=MS.gene23127.t1.exon2;Parent=MS.gene23127.t1 |
| chr7.2 | CDS | 4193441 | 4193685 | 4193441 | ID=cds.MS.gene23127.t1;Parent=MS.gene23127.t1 |
| chr7.2 | exon | 4193103 | 4193349 | 4193103 | ID=MS.gene23127.t1.exon3;Parent=MS.gene23127.t1 |
| chr7.2 | CDS | 4193103 | 4193349 | 4193103 | ID=cds.MS.gene23127.t1;Parent=MS.gene23127.t1 |
| Gene Sequence |
| Protein sequence |
