Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23656.t1 | XP_013454624.1 | 92.5 | 863 | 64 | 1 | 1 | 862 | 1 | 863 | 0.00E+00 | 1606.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23656.t1 | Q99575 | 22.0 | 686 | 381 | 20 | 19 | 611 | 99 | 723 | 1.6e-16 | 90.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23656.t1 | A0A072US02 | 92.5 | 863 | 64 | 1 | 1 | 862 | 1 | 863 | 0.0e+00 | 1606.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049272 | MS.gene23656 | 0.805729 | 1.16E-49 | -1.69E-46 |
| MS.gene049435 | MS.gene23656 | 0.821424 | 4.07E-53 | -1.69E-46 |
| MS.gene050156 | MS.gene23656 | 0.808113 | 3.63E-50 | -1.69E-46 |
| MS.gene050442 | MS.gene23656 | 0.814398 | 1.57E-51 | -1.69E-46 |
| MS.gene051147 | MS.gene23656 | 0.990127 | 3.50E-181 | -1.69E-46 |
| MS.gene051800 | MS.gene23656 | 0.827811 | 1.27E-54 | -1.69E-46 |
| MS.gene052674 | MS.gene23656 | 0.800982 | 1.12E-48 | -1.69E-46 |
| MS.gene052675 | MS.gene23656 | 0.800623 | 1.32E-48 | -1.69E-46 |
| MS.gene052677 | MS.gene23656 | 0.811963 | 5.38E-51 | -1.69E-46 |
| MS.gene053166 | MS.gene23656 | 0.81019 | 1.30E-50 | -1.69E-46 |
| MS.gene05414 | MS.gene23656 | 0.807036 | 6.15E-50 | -1.69E-46 |
| MS.gene054236 | MS.gene23656 | 0.803295 | 3.73E-49 | -1.69E-46 |
| MS.gene054467 | MS.gene23656 | 0.80033 | 1.52E-48 | -1.69E-46 |
| MS.gene054468 | MS.gene23656 | 0.800082 | 1.70E-48 | -1.69E-46 |
| MS.gene055864 | MS.gene23656 | 0.803682 | 3.10E-49 | -1.69E-46 |
| MS.gene055875 | MS.gene23656 | 0.828562 | 8.39E-55 | -1.69E-46 |
| MS.gene055926 | MS.gene23656 | 0.812216 | 4.74E-51 | -1.69E-46 |
| MS.gene056162 | MS.gene23656 | 0.802111 | 6.55E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene23656 | 0.801539 | 8.59E-49 | -1.69E-46 |
| MS.gene057755 | MS.gene23656 | 0.808217 | 3.45E-50 | -1.69E-46 |
| MS.gene057915 | MS.gene23656 | 0.809794 | 1.59E-50 | -1.69E-46 |
| MS.gene058081 | MS.gene23656 | 0.827186 | 1.80E-54 | -1.69E-46 |
| MS.gene059283 | MS.gene23656 | 0.803163 | 3.97E-49 | -1.69E-46 |
| MS.gene060011 | MS.gene23656 | 0.809656 | 1.70E-50 | -1.69E-46 |
| MS.gene060167 | MS.gene23656 | 0.833748 | 4.46E-56 | -1.69E-46 |
| MS.gene06052 | MS.gene23656 | 0.86199 | 6.96E-64 | -1.69E-46 |
| MS.gene060802 | MS.gene23656 | 0.8274 | 1.60E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23656.t1 | MTR_4g008840 | 92.468 | 863 | 64 | 1 | 1 | 862 | 1 | 863 | 0.0 | 1658 |
| MS.gene23656.t1 | MTR_8g035910 | 86.875 | 160 | 20 | 1 | 905 | 1063 | 269 | 428 | 2.56e-86 | 285 |
| MS.gene23656.t1 | MTR_8g035640 | 79.200 | 125 | 24 | 2 | 915 | 1038 | 33 | 156 | 8.59e-55 | 188 |
| MS.gene23656.t1 | MTR_0001s0490 | 51.515 | 66 | 28 | 2 | 933 | 998 | 88 | 149 | 9.86e-13 | 71.2 |
| MS.gene23656.t1 | MTR_4g125490 | 46.835 | 79 | 31 | 2 | 933 | 1000 | 73 | 151 | 1.02e-12 | 72.0 |
| MS.gene23656.t1 | MTR_7g104050 | 62.745 | 51 | 18 | 1 | 933 | 983 | 142 | 191 | 1.37e-12 | 70.9 |
| MS.gene23656.t1 | MTR_7g104050 | 62.745 | 51 | 18 | 1 | 933 | 983 | 142 | 191 | 1.74e-12 | 70.9 |
| MS.gene23656.t1 | MTR_2g041430 | 69.231 | 39 | 12 | 0 | 933 | 971 | 75 | 113 | 2.15e-12 | 70.5 |
| MS.gene23656.t1 | MTR_2g041430 | 69.231 | 39 | 12 | 0 | 933 | 971 | 75 | 113 | 2.36e-12 | 70.1 |
| MS.gene23656.t1 | MTR_2g041430 | 69.231 | 39 | 12 | 0 | 933 | 971 | 75 | 113 | 2.36e-12 | 70.1 |
| MS.gene23656.t1 | MTR_8g020560 | 55.769 | 52 | 20 | 1 | 920 | 971 | 65 | 113 | 5.55e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23656.t1 | AT2G47300 | 47.552 | 858 | 393 | 18 | 7 | 856 | 11 | 819 | 0.0 | 686 |
| MS.gene23656.t1 | AT2G47300 | 46.565 | 786 | 365 | 17 | 19 | 796 | 21 | 759 | 0.0 | 607 |
| MS.gene23656.t1 | AT2G47300 | 44.559 | 680 | 326 | 16 | 185 | 856 | 16 | 652 | 6.21e-153 | 470 |
| MS.gene23656.t1 | AT2G45480 | 57.576 | 66 | 24 | 1 | 907 | 972 | 284 | 345 | 2.05e-15 | 80.5 |
| MS.gene23656.t1 | AT2G45480 | 57.576 | 66 | 24 | 1 | 907 | 972 | 282 | 343 | 2.13e-15 | 80.5 |
| MS.gene23656.t1 | AT2G36400 | 65.854 | 41 | 14 | 0 | 931 | 971 | 141 | 181 | 6.52e-12 | 69.3 |
| MS.gene23656.t1 | AT2G06200 | 53.704 | 54 | 23 | 1 | 933 | 986 | 7 | 58 | 1.07e-11 | 65.1 |
| MS.gene23656.t1 | AT5G53660 | 48.485 | 66 | 34 | 0 | 912 | 977 | 85 | 150 | 2.20e-11 | 67.4 |
| MS.gene23656.t1 | AT2G06200 | 66.667 | 39 | 13 | 0 | 933 | 971 | 118 | 156 | 3.23e-11 | 65.9 |
| MS.gene23656.t1 | AT3G13960 | 61.364 | 44 | 17 | 0 | 934 | 977 | 81 | 124 | 3.49e-11 | 67.0 |
| MS.gene23656.t1 | AT2G06200 | 53.704 | 54 | 23 | 1 | 933 | 986 | 79 | 130 | 4.32e-11 | 64.7 |
| MS.gene23656.t1 | AT2G45480 | 69.231 | 39 | 12 | 0 | 933 | 971 | 88 | 126 | 5.67e-11 | 65.5 |
| MS.gene23656.t1 | AT4G37740 | 42.500 | 80 | 44 | 1 | 933 | 1012 | 226 | 303 | 6.15e-11 | 67.0 |
| MS.gene23656.t1 | AT3G52910 | 64.103 | 39 | 14 | 0 | 933 | 971 | 150 | 188 | 6.37e-11 | 66.2 |
Find 242 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACGATGATTCTGTTCTTTC+TGG | 0.054912 | 8.1:+67234770 | MS.gene23656:CDS |
| GAGACCAACAATTCGCTTTC+TGG | 0.103287 | 8.1:-67241502 | None:intergenic |
| TGCCTAGATGACATGAATTT+TGG | 0.105298 | 8.1:+67236485 | MS.gene23656:CDS |
| TGAGGGTCAACTTGCAAAAT+TGG | 0.144658 | 8.1:+67235920 | MS.gene23656:CDS |
| TTTAATAAACTTAGAGATTC+TGG | 0.171405 | 8.1:-67237510 | None:intergenic |
| AACAGAATCATCGTGATTTC+TGG | 0.175577 | 8.1:-67234762 | None:intergenic |
| ATTGAGTTTGCAAACTTCTA+TGG | 0.197495 | 8.1:-67240102 | None:intergenic |
| AATAGAGCCGATTTCAATTA+AGG | 0.204495 | 8.1:+67236268 | MS.gene23656:CDS |
| TTGGAAAAGAGTAAAGATTT+TGG | 0.219252 | 8.1:+67236347 | MS.gene23656:CDS |
| TGGATTCCACTTGTCTCTAA+TGG | 0.225620 | 8.1:+67236928 | MS.gene23656:CDS |
| AAGAGAATTCCTCCGGTAAA+TGG | 0.237106 | 8.1:+67238562 | MS.gene23656:CDS |
| AGAATCTCTAAGTTTATTAA+AGG | 0.245051 | 8.1:+67237512 | MS.gene23656:CDS |
| TTGCAAAGAGCTTGCTGATT+TGG | 0.247309 | 8.1:+67236316 | MS.gene23656:CDS |
| TTAATTGAAATCGGCTCTAT+TGG | 0.248763 | 8.1:-67236266 | None:intergenic |
| TGTGCCCCTTTCTTGCAATT+TGG | 0.260460 | 8.1:-67234116 | None:intergenic |
| TAACAGCAATCGACCGGTTT+TGG | 0.265238 | 8.1:-67237462 | None:intergenic |
| ATCCTTCTGACGTATCTTTC+TGG | 0.277975 | 8.1:+67237663 | MS.gene23656:CDS |
| TCTGGGATGTGTTACTTCTA+TGG | 0.285905 | 8.1:-67234744 | None:intergenic |
| TTACCTTGAAGAACACTCTT+TGG | 0.287217 | 8.1:-67240176 | None:intergenic |
| GGATTCCACTTGTCTCTAAT+GGG | 0.295341 | 8.1:+67236929 | MS.gene23656:CDS |
| TAAGTTGGGTTAAAGCCTTC+TGG | 0.296727 | 8.1:+67236908 | MS.gene23656:CDS |
| GTGGGGTTACCACCTTCCTC+TGG | 0.297256 | 8.1:+67234344 | MS.gene23656:CDS |
| GACTCTGAGAATGCATTTGA+TGG | 0.300414 | 8.1:+67237392 | MS.gene23656:CDS |
| TTCTATTGTCCTAGAATATC+AGG | 0.303319 | 8.1:+67238942 | MS.gene23656:CDS |
| TACCTTGAAGAACACTCTTT+GGG | 0.304776 | 8.1:-67240175 | None:intergenic |
| TGCAAAGAGCTTGCTGATTT+GGG | 0.314452 | 8.1:+67236317 | MS.gene23656:CDS |
| AGATCTTGAGCACTGCTCTT+TGG | 0.318892 | 8.1:-67236522 | None:intergenic |
| CTTGCAAAATTGGAATTAGT+TGG | 0.326710 | 8.1:+67235930 | MS.gene23656:CDS |
| GTCTGTTCTTCGGCATCTAC+CGG | 0.333340 | 8.1:-67241285 | None:intergenic |
| CTTCGGCATCTACCGGGTTC+AGG | 0.333784 | 8.1:-67241278 | None:intergenic |
| CTATTATACTTCCCTTAAGT+TGG | 0.342403 | 8.1:+67236893 | MS.gene23656:CDS |
| AGTTCCCATCCTGCCTCCTT+GGG | 0.348306 | 8.1:+67237238 | MS.gene23656:CDS |
| TGCAAGAGCGCGGTTCTTCC+TGG | 0.348558 | 8.1:+67241323 | MS.gene23656:CDS |
| AAATATTAAATCCTGTTAGA+AGG | 0.352466 | 8.1:+67235979 | MS.gene23656:CDS |
| TAAGCAACAAACCTTCTAAC+AGG | 0.354267 | 8.1:-67235990 | None:intergenic |
| CACCTTCCTCTGGGTCTTCA+AGG | 0.356395 | 8.1:+67234354 | MS.gene23656:CDS |
| CTTAGAGCCTTAATTGAAAT+CGG | 0.358250 | 8.1:-67236275 | None:intergenic |
| ATCATTTGTTCTTCTCTTGA+GGG | 0.358847 | 8.1:+67235903 | MS.gene23656:CDS |
| GAGTTCCCATCCTGCCTCCT+TGG | 0.359963 | 8.1:+67237237 | MS.gene23656:CDS |
| GAAGGCTTTAACCCAACTTA+AGG | 0.363709 | 8.1:-67236905 | None:intergenic |
| GGGTTCAGGTTCTATTATAC+TGG | 0.376221 | 8.1:-67241264 | None:intergenic |
| ACTTCTTACCGTCTGTTCTT+CGG | 0.376270 | 8.1:-67241295 | None:intergenic |
| AGAGAATTCCTCCGGTAAAT+GGG | 0.376369 | 8.1:+67238563 | MS.gene23656:CDS |
| CAAGGCATACTCACGCTTCA+TGG | 0.380612 | 8.1:+67237151 | MS.gene23656:CDS |
| GTTCTTTCTGGCACAACCTA+TGG | 0.382892 | 8.1:+67234782 | MS.gene23656:CDS |
| GTTACGTCAGCTTGTGTTCA+AGG | 0.383628 | 8.1:+67238645 | MS.gene23656:CDS |
| AGGATATGCTAATCTAAAAC+TGG | 0.383974 | 8.1:+67235107 | MS.gene23656:CDS |
| TGCAATCCGGGAAATCTTGC+GGG | 0.385327 | 8.1:-67237130 | None:intergenic |
| GGAAGACAATGTCCTTTCTA+TGG | 0.386496 | 8.1:+67236433 | MS.gene23656:CDS |
| TTCGCTCCTTCTCTGCTTCA+CGG | 0.386929 | 8.1:-67238866 | None:intergenic |
| GCTATGGGTGCTGAACCTTT+AGG | 0.391485 | 8.1:-67233946 | None:intergenic |
| CTATTACTCTGCCATTCAAT+TGG | 0.399416 | 8.1:+67234586 | MS.gene23656:CDS |
| CACCGGAGGCTTCAAGCCTC+TGG | 0.402040 | 8.1:-67236411 | None:intergenic |
| CGTGAGTATGCCTTGCAATC+CGG | 0.402264 | 8.1:-67237143 | None:intergenic |
| CTCTTGCAAAACATAGCTTA+TGG | 0.402941 | 8.1:-67237580 | None:intergenic |
| AAAGACCCTCGATGGTCTAC+TGG | 0.404881 | 8.1:+67240140 | MS.gene23656:CDS |
| AAGGCTTTAACCCAACTTAA+GGG | 0.407159 | 8.1:-67236904 | None:intergenic |
| TAATGACCAAATTGCAAGAA+AGG | 0.410081 | 8.1:+67234110 | MS.gene23656:CDS |
| AAATTGGAATTAGTTGGATC+AGG | 0.410339 | 8.1:+67235936 | MS.gene23656:CDS |
| CGTTGAAGGCTTTGAAGCTC+AGG | 0.410712 | 8.1:-67234018 | None:intergenic |
| TATTATACTTCCCTTAAGTT+GGG | 0.412430 | 8.1:+67236894 | MS.gene23656:CDS |
| TTGCGAGGTGGCGCTGCTAT+GGG | 0.412445 | 8.1:-67233961 | None:intergenic |
| CTGGGATGTGTTACTTCTAT+GGG | 0.416101 | 8.1:-67234743 | None:intergenic |
| CTCTTACTGTTAAGGATCCT+CGG | 0.419333 | 8.1:+67236216 | MS.gene23656:CDS |
| TTTGCGAGGTGGCGCTGCTA+TGG | 0.419684 | 8.1:-67233962 | None:intergenic |
| AGTCTGATGTTGATGATCTA+TGG | 0.419977 | 8.1:+67236378 | MS.gene23656:CDS |
| GAAGAGCAAAACCCATTCTC+AGG | 0.420741 | 8.1:-67234255 | None:intergenic |
| TCCCCAAAGAGTGTTCTTCA+AGG | 0.426093 | 8.1:+67240173 | MS.gene23656:CDS |
| AGTTGGAGCACCGGTTTCTC+AGG | 0.427631 | 8.1:+67234906 | MS.gene23656:CDS |
| ATTTAAGATCTGTTGCGTAT+AGG | 0.428231 | 8.1:+67238908 | MS.gene23656:CDS |
| GGACGCCACATATAAGTTAC+AGG | 0.429934 | 8.1:-67234937 | None:intergenic |
| GAGTCTCACCGGTGGCCTAT+TGG | 0.430215 | 8.1:+67238618 | MS.gene23656:CDS |
| GATCATTTGTTCTTCTCTTG+AGG | 0.430235 | 8.1:+67235902 | MS.gene23656:CDS |
| AATGACCAAATTGCAAGAAA+GGG | 0.430274 | 8.1:+67234111 | MS.gene23656:CDS |
| TATCAGTATTCCCCATTTAC+CGG | 0.431950 | 8.1:-67238574 | None:intergenic |
| AATGTTATCTCTTACTGTTA+AGG | 0.432713 | 8.1:+67236208 | MS.gene23656:CDS |
| ATATGCATAGAGGTGCTAAA+AGG | 0.433321 | 8.1:+67241366 | MS.gene23656:CDS |
| ACGTATCTTTCTGGACTTCA+AGG | 0.433594 | 8.1:+67237672 | MS.gene23656:CDS |
| TTGCAAACTCAATCAAATCA+TGG | 0.434070 | 8.1:+67240112 | MS.gene23656:CDS |
| AAGATAGCTACACTCATTCA+TGG | 0.436115 | 8.1:-67241636 | None:intergenic |
| AGCTGCTGAATGTGATCAAA+AGG | 0.436538 | 8.1:+67237181 | MS.gene23656:CDS |
| AGAGACTGAGAACGCATGTT+TGG | 0.437395 | 8.1:+67234292 | MS.gene23656:CDS |
| GCCATTCCATCTGCTGCATA+AGG | 0.439701 | 8.1:-67237488 | None:intergenic |
| CATGCTTCTGCCTTTGAAGA+AGG | 0.439897 | 8.1:+67235087 | MS.gene23656:CDS |
| TCTCTATCAATTGAATCATC+TGG | 0.442415 | 8.1:-67238597 | None:intergenic |
| AAGAAAACAGAAGCTGTAAA+CGG | 0.445275 | 8.1:-67239438 | None:intergenic |
| GAGCACAAAACTTTCAATGT+TGG | 0.445894 | 8.1:+67241526 | MS.gene23656:CDS |
| TTCGCTTTCTGGATGTCGGT+TGG | 0.446785 | 8.1:-67241491 | None:intergenic |
| GGCTTTGAAGCTCAGGGGCA+CGG | 0.447375 | 8.1:-67234011 | None:intergenic |
| TGCTCAGTTGCCCTACCCTT+CGG | 0.452326 | 8.1:+67241466 | MS.gene23656:CDS |
| GTGAGTATGCCTTGCAATCC+GGG | 0.453013 | 8.1:-67237142 | None:intergenic |
| GCGAAATATACGTACTTGTC+AGG | 0.453281 | 8.1:+67238884 | MS.gene23656:CDS |
| ACATCCAGAAAGCGAATTGT+TGG | 0.453386 | 8.1:+67241498 | MS.gene23656:CDS |
| TCTAATGGGGCACATGCAAT+AGG | 0.456308 | 8.1:+67236943 | MS.gene23656:CDS |
| TGGGGTTACCACCTTCCTCT+GGG | 0.456908 | 8.1:+67234345 | MS.gene23656:CDS |
| CAGCAAGAGGCTTGCAGCAG+AGG | 0.460920 | 8.1:+67238786 | MS.gene23656:intron |
| GGAGCAATTGCCTGAGAAAC+CGG | 0.463024 | 8.1:-67234916 | None:intergenic |
| CTCAAGAGTAACCCTGAGAA+TGG | 0.463686 | 8.1:+67234243 | MS.gene23656:CDS |
| AACATGCGTTCTCAGTCTCT+TGG | 0.464474 | 8.1:-67234289 | None:intergenic |
| TTACTTGATGAAACCAAAAC+CGG | 0.465795 | 8.1:+67237449 | MS.gene23656:CDS |
| TATTGACAGCTTCATCAAGT+TGG | 0.467639 | 8.1:+67234889 | MS.gene23656:intron |
| AGAAAACAGAAGCTGTAAAC+GGG | 0.473925 | 8.1:-67239437 | None:intergenic |
| GGGAGGTGTTGAGGATGATC+AGG | 0.474694 | 8.1:-67239417 | None:intergenic |
| TTGAGTTTGCAAACTTCTAT+GGG | 0.475317 | 8.1:-67240101 | None:intergenic |
| GAAAGGGGCACAGGAGAAAG+AGG | 0.477617 | 8.1:+67234127 | MS.gene23656:CDS |
| TTCTCATTACAATCAACAAA+GGG | 0.478520 | 8.1:-67241563 | None:intergenic |
| TGCTGATTTGGGAGGAATGT+TGG | 0.479953 | 8.1:+67236328 | MS.gene23656:CDS |
| GATGGAATTGTAGCAAGGAC+AGG | 0.483715 | 8.1:+67237410 | MS.gene23656:CDS |
| TGGATGTCGGTTGGAGCCGA+AGG | 0.485035 | 8.1:-67241482 | None:intergenic |
| TTGTCACATAAATCAACATC+AGG | 0.486201 | 8.1:-67235012 | None:intergenic |
| AGAATTTAACCATGCGTTCA+CGG | 0.486596 | 8.1:-67236463 | None:intergenic |
| ACAGAATCATCGTGATTTCT+GGG | 0.486757 | 8.1:-67234761 | None:intergenic |
| TTACTCTGCCATTCAATTGG+AGG | 0.487918 | 8.1:+67234589 | MS.gene23656:CDS |
| TCGCTCCTTCTCTGCTTCAC+GGG | 0.489105 | 8.1:-67238865 | None:intergenic |
| TTATTTCCTTATGCAGCAGA+TGG | 0.489862 | 8.1:+67237482 | MS.gene23656:CDS |
| TCTTACTGTTAAGGATCCTC+GGG | 0.491616 | 8.1:+67236217 | MS.gene23656:CDS |
| ATGTGACAAATCAGAAAGAA+TGG | 0.492645 | 8.1:+67235026 | MS.gene23656:CDS |
| GTCGGTTGGAGCCGAAGGGT+AGG | 0.492839 | 8.1:-67241477 | None:intergenic |
| TCCTTGTCAAACCCTTGTCC+TGG | 0.496459 | 8.1:+67237347 | MS.gene23656:CDS |
| AGCAAGAGGCTTGCAGCAGA+GGG | 0.498701 | 8.1:+67238787 | MS.gene23656:intron |
| AGTTCATCTTCACCCATTCA+AGG | 0.499877 | 8.1:+67237601 | MS.gene23656:CDS |
| GACTCTTGACCTTTCAGCTA+GGG | 0.500364 | 8.1:+67237304 | MS.gene23656:CDS |
| AGATGCCCGTGAAGCAGAGA+AGG | 0.501884 | 8.1:+67238860 | MS.gene23656:CDS |
| AGTCACCATTGCTGTTCCAT+AGG | 0.502080 | 8.1:-67234798 | None:intergenic |
| AACCAGAGGCTTGAAGCCTC+CGG | 0.504573 | 8.1:+67236409 | MS.gene23656:CDS |
| ACAGTATTTCAGAAAATCGT+TGG | 0.505314 | 8.1:+67236090 | MS.gene23656:intron |
| CCCCAAAATTCATGTCATCT+AGG | 0.510108 | 8.1:-67236487 | None:intergenic |
| CTCTGGACCCTCCAATTGAA+TGG | 0.511136 | 8.1:-67234597 | None:intergenic |
| GCTGACGTAACAAAGCCAAT+AGG | 0.516172 | 8.1:-67238633 | None:intergenic |
| TCCTTATGCAGCAGATGGAA+TGG | 0.516719 | 8.1:+67237487 | MS.gene23656:CDS |
| CTCAAATTTCTTACAGAAGG+AGG | 0.517258 | 8.1:-67237215 | None:intergenic |
| TTGTGTTTATTCAGAGGGAA+AGG | 0.521942 | 8.1:+67234509 | MS.gene23656:intron |
| GCTTTGAAGCTCAGGGGCAC+GGG | 0.522543 | 8.1:-67234010 | None:intergenic |
| ACTCTCAAATTTCTTACAGA+AGG | 0.523204 | 8.1:-67237218 | None:intergenic |
| AATTGGAATTAGTTGGATCA+GGG | 0.526110 | 8.1:+67235937 | MS.gene23656:CDS |
| TACTCTGCCATTCAATTGGA+GGG | 0.527574 | 8.1:+67234590 | MS.gene23656:CDS |
| CATCTTCACCCATTCAAGGA+AGG | 0.528184 | 8.1:+67237605 | MS.gene23656:CDS |
| CACGGTGCTTCTCCATAGAA+AGG | 0.530757 | 8.1:-67236445 | None:intergenic |
| CTCATTCATGGTGTCGGTGA+TGG | 0.530932 | 8.1:-67241624 | None:intergenic |
| AAAACTGGCCTGCGAGAAAG+AGG | 0.532470 | 8.1:+67235122 | MS.gene23656:CDS |
| TCAAGAGTAACCCTGAGAAT+GGG | 0.533313 | 8.1:+67234244 | MS.gene23656:CDS |
| AAAGCTCAAACAAGGTGTGC+TGG | 0.534899 | 8.1:+67234550 | MS.gene23656:CDS |
| GAACAATACCCCAAGGAGGC+AGG | 0.535102 | 8.1:-67237247 | None:intergenic |
| TATTCAGAGGGAAAGGTTCG+AGG | 0.535463 | 8.1:+67234516 | MS.gene23656:intron |
| TTAGGAATAACAGTGGTGGC+AGG | 0.535699 | 8.1:-67241413 | None:intergenic |
| ATGTGTTACTTCTATGGGAG+AGG | 0.535981 | 8.1:-67234738 | None:intergenic |
| ACAATTCGCTTTCTGGATGT+CGG | 0.539572 | 8.1:-67241495 | None:intergenic |
| TATTTCAAAGAGAATTCCTC+CGG | 0.540175 | 8.1:+67238555 | MS.gene23656:CDS |
| AGGAAATAACAGCAATCGAC+CGG | 0.540992 | 8.1:-67237468 | None:intergenic |
| TCTGTTCTTCGGCATCTACC+GGG | 0.542080 | 8.1:-67241284 | None:intergenic |
| TTTCTCATTACAATCAACAA+AGG | 0.549314 | 8.1:-67241564 | None:intergenic |
| GTTTGACAAGGAATTAGCAT+TGG | 0.549360 | 8.1:-67237336 | None:intergenic |
| ATTAGCATATCCTTCTTCAA+AGG | 0.551594 | 8.1:-67235097 | None:intergenic |
| CAAGAAAATATCACAGACCT+AGG | 0.553764 | 8.1:+67234967 | MS.gene23656:CDS |
| TGCAAACTCAATCAAATCAT+GGG | 0.554102 | 8.1:+67240113 | MS.gene23656:CDS |
| TTGCAATCCGGGAAATCTTG+CGG | 0.562083 | 8.1:-67237131 | None:intergenic |
| AACTTCTATGGGACTCTCGA+TGG | 0.563194 | 8.1:-67240090 | None:intergenic |
| CGTCAGCTTGTGTTCAAGGA+AGG | 0.563437 | 8.1:+67238649 | MS.gene23656:CDS |
| GCAAGATTTCCCGGATTGCA+AGG | 0.563856 | 8.1:+67237133 | MS.gene23656:CDS |
| TCGGTTGGAGCCGAAGGGTA+GGG | 0.568957 | 8.1:-67241476 | None:intergenic |
| CTCAGTTAAGAGAGGAACAG+TGG | 0.569204 | 8.1:+67238833 | MS.gene23656:CDS |
| TTCCTCTGGGTCTTCAAGGA+AGG | 0.569696 | 8.1:+67234358 | MS.gene23656:CDS |
| ATACCCCAAGGAGGCAGGAT+GGG | 0.570094 | 8.1:-67237242 | None:intergenic |
| TGTTGAGGATGATCAGGTAA+AGG | 0.572017 | 8.1:-67239411 | None:intergenic |
| GTTGAAGGCTTTGAAGCTCA+GGG | 0.572937 | 8.1:-67234017 | None:intergenic |
| AAATTGCAAGAAAGGGGCAC+AGG | 0.575712 | 8.1:+67234118 | MS.gene23656:CDS |
| TTGCTCCTGTAACTTATATG+TGG | 0.576245 | 8.1:+67234932 | MS.gene23656:CDS |
| GCACGGGATTCTGCAAACTT+CGG | 0.577655 | 8.1:-67233994 | None:intergenic |
| GCTTCATCAAGTTGGAGCAC+CGG | 0.578040 | 8.1:+67234897 | MS.gene23656:intron |
| GCAATGATTATAAGTCTCAA+AGG | 0.578223 | 8.1:+67234061 | MS.gene23656:CDS |
| ATTCAGAGGGAAAGGTTCGA+GGG | 0.578851 | 8.1:+67234517 | MS.gene23656:intron |
| TTTACTATCTCAGTTAAGAG+AGG | 0.579772 | 8.1:+67238825 | MS.gene23656:CDS |
| GATATGAAGGAATTGACCAT+GGG | 0.583629 | 8.1:+67236569 | MS.gene23656:CDS |
| GTATTTCAGAAAATCGTTGG+CGG | 0.583685 | 8.1:+67236093 | MS.gene23656:intron |
| GGAGAAGCACCGTGAACGCA+TGG | 0.584425 | 8.1:+67236454 | MS.gene23656:CDS |
| CAGTTCAGTGAAAAGAGAAG+TGG | 0.586513 | 8.1:+67238500 | MS.gene23656:intron |
| TCTTGACCTTTCAGCTAGGG+AGG | 0.586888 | 8.1:+67237307 | MS.gene23656:CDS |
| GAAAGGACATTGTCTTCCAC+CGG | 0.587378 | 8.1:-67236428 | None:intergenic |
| TAGGTTTGCGAGAGAAGCAG+TGG | 0.587984 | 8.1:+67236962 | MS.gene23656:CDS |
| AGACTCTTGACCTTTCAGCT+AGG | 0.588904 | 8.1:+67237303 | MS.gene23656:CDS |
| AATACCCCAAGGAGGCAGGA+TGG | 0.591808 | 8.1:-67237243 | None:intergenic |
| TGGTGGCAGGAAGAGATTCG+AGG | 0.592092 | 8.1:-67241400 | None:intergenic |
| AAAGAGCTTGCTGATTTGGG+AGG | 0.594632 | 8.1:+67236320 | MS.gene23656:CDS |
| ACCTTGAAGAACACTCTTTG+GGG | 0.595408 | 8.1:-67240174 | None:intergenic |
| AAAGATACGTCAGAAGGATG+TGG | 0.599165 | 8.1:-67237659 | None:intergenic |
| GTTAAGAGAGGAACAGTGGA+AGG | 0.599221 | 8.1:+67238837 | MS.gene23656:CDS |
| GTAACCCCACAACTTGGTCA+TGG | 0.600119 | 8.1:-67234331 | None:intergenic |
| AGAGTGAACCTCTTTCTCGC+AGG | 0.600410 | 8.1:-67235130 | None:intergenic |
| ATGACCAAATTGCAAGAAAG+GGG | 0.601491 | 8.1:+67234112 | MS.gene23656:CDS |
| TGATATGAAGGAATTGACCA+TGG | 0.602371 | 8.1:+67236568 | MS.gene23656:CDS |
| TCAAATCCTCCCTAGCTGAA+AGG | 0.602987 | 8.1:-67237313 | None:intergenic |
| CAACAAAGAGATTAGCACAA+TGG | 0.603231 | 8.1:+67237280 | MS.gene23656:CDS |
| GCTGTAAACGGGAGGTGTTG+AGG | 0.603692 | 8.1:-67239426 | None:intergenic |
| GTTCCCATCCTGCCTCCTTG+GGG | 0.604969 | 8.1:+67237239 | MS.gene23656:CDS |
| GAGAATTCCTCCGGTAAATG+GGG | 0.610816 | 8.1:+67238564 | MS.gene23656:CDS |
| TTCCTTGAAGACCCAGAGGA+AGG | 0.611374 | 8.1:-67234356 | None:intergenic |
| AAGGTGGTAACCCCACAACT+TGG | 0.613131 | 8.1:-67234337 | None:intergenic |
| CAGAGGCTTGAAGCCTCCGG+TGG | 0.616523 | 8.1:+67236412 | MS.gene23656:CDS |
| CATTCAATTGGAGGGTCCAG+AGG | 0.616752 | 8.1:+67234598 | MS.gene23656:CDS |
| AGGACATTGTCTTCCACCGG+AGG | 0.616810 | 8.1:-67236425 | None:intergenic |
| TGTGCCCCATTAGAGACAAG+TGG | 0.618914 | 8.1:-67236934 | None:intergenic |
| GATTCCACTTGTCTCTAATG+GGG | 0.621104 | 8.1:+67236930 | MS.gene23656:CDS |
| ATTCATGGTGTCGGTGATGG+TGG | 0.622850 | 8.1:-67241621 | None:intergenic |
| AGGGTAGGGCAACTGAGCAA+TGG | 0.623504 | 8.1:-67241462 | None:intergenic |
| GAAGAACAGACGGTAAGAAG+TGG | 0.625144 | 8.1:+67241297 | MS.gene23656:CDS |
| GCTACACTCATTCATGGTGT+CGG | 0.626481 | 8.1:-67241630 | None:intergenic |
| AGTTCAGTGAAAAGAGAAGT+GGG | 0.627351 | 8.1:+67238501 | MS.gene23656:intron |
| TGTGTTACTTCTATGGGAGA+GGG | 0.628291 | 8.1:-67234737 | None:intergenic |
| CTATGGTATGCTACAACCAG+AGG | 0.628647 | 8.1:+67236395 | MS.gene23656:CDS |
| CATTTGATGGAATTGTAGCA+AGG | 0.633029 | 8.1:+67237405 | MS.gene23656:CDS |
| GGATGTCGGTTGGAGCCGAA+GGG | 0.633865 | 8.1:-67241481 | None:intergenic |
| AAGCATGTATCCACACCCAA+AGG | 0.635207 | 8.1:-67235071 | None:intergenic |
| CTTGAAGACCCAGAGGAAGG+TGG | 0.636879 | 8.1:-67234353 | None:intergenic |
| AAGAGCAAAACCCATTCTCA+GGG | 0.639457 | 8.1:-67234254 | None:intergenic |
| GTCCAGAAAGATACGTCAGA+AGG | 0.641525 | 8.1:-67237665 | None:intergenic |
| CAGTATTCCCCATTTACCGG+AGG | 0.644448 | 8.1:-67238571 | None:intergenic |
| AGTATAATAGAACCTGAACC+CGG | 0.645283 | 8.1:+67241266 | MS.gene23656:CDS |
| AGAGACAAGTGGAATCCAGA+AGG | 0.647770 | 8.1:-67236923 | None:intergenic |
| CACAACCTATGGAACAGCAA+TGG | 0.648609 | 8.1:+67234793 | MS.gene23656:CDS |
| TATCTTCGACGAACATGTCG+AGG | 0.649178 | 8.1:-67234216 | None:intergenic |
| TAACAAAGCCAATAGGCCAC+CGG | 0.652198 | 8.1:-67238626 | None:intergenic |
| CAATTGATAGAGAGTCTCAC+CGG | 0.654193 | 8.1:+67238607 | MS.gene23656:CDS |
| ATAGATCATCAACATCAGAC+TGG | 0.655562 | 8.1:-67236376 | None:intergenic |
| CTGTTGATAAAGCTCAAACA+AGG | 0.657488 | 8.1:+67234542 | MS.gene23656:CDS |
| GTTGCACAATACTTCTGACC+AGG | 0.660881 | 8.1:-67241341 | None:intergenic |
| GGTAGATGCCGAAGAACAGA+CGG | 0.663156 | 8.1:+67241287 | MS.gene23656:CDS |
| ATTATTCAGATGGAAAAGAG+AGG | 0.664844 | 8.1:+67235873 | MS.gene23656:intron |
| ATATTCCAGTAGACCATCGA+GGG | 0.666559 | 8.1:-67240145 | None:intergenic |
| TGGGACATAAAGACCCTCGA+TGG | 0.669376 | 8.1:+67240132 | MS.gene23656:CDS |
| GAGAAATAATGCTTGATACG+AGG | 0.669822 | 8.1:+67237534 | MS.gene23656:CDS |
| AAACAGAAGCTGTAAACGGG+AGG | 0.691314 | 8.1:-67239434 | None:intergenic |
| ACCAGGACAAGGGTTTGACA+AGG | 0.692431 | 8.1:-67237348 | None:intergenic |
| GTATTGTGAACAATACCCCA+AGG | 0.699160 | 8.1:-67237254 | None:intergenic |
| TACCTTCCTTGAAGACCCAG+AGG | 0.702311 | 8.1:-67234360 | None:intergenic |
| TGTGCAACACATATGCATAG+AGG | 0.702542 | 8.1:+67241356 | MS.gene23656:CDS |
| AATGAGAAAAGTATTAGCAG+CGG | 0.705946 | 8.1:+67241578 | MS.gene23656:CDS |
| TTGAAGGCTTTGAAGCTCAG+GGG | 0.710449 | 8.1:-67234016 | None:intergenic |
| TTGATAGAGAGTCTCACCGG+TGG | 0.722507 | 8.1:+67238610 | MS.gene23656:CDS |
| ATATGAAGGAATTGACCATG+GGG | 0.726362 | 8.1:+67236570 | MS.gene23656:CDS |
| CATATTCCAGTAGACCATCG+AGG | 0.730124 | 8.1:-67240146 | None:intergenic |
| GAAGTGGCGATGCAAGAGCG+CGG | 0.745241 | 8.1:+67241313 | MS.gene23656:CDS |
| TTGTGAACAATACCCCAAGG+AGG | 0.760527 | 8.1:-67237251 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 67233922 | 67241667 | 67233922 | ID=MS.gene23656 |
| chr8.1 | mRNA | 67233922 | 67241667 | 67233922 | ID=MS.gene23656.t1;Parent=MS.gene23656 |
| chr8.1 | exon | 67233922 | 67234379 | 67233922 | ID=MS.gene23656.t1.exon1;Parent=MS.gene23656.t1 |
| chr8.1 | CDS | 67233922 | 67234379 | 67233922 | ID=cds.MS.gene23656.t1;Parent=MS.gene23656.t1 |
| chr8.1 | exon | 67234523 | 67234619 | 67234523 | ID=MS.gene23656.t1.exon2;Parent=MS.gene23656.t1 |
| chr8.1 | CDS | 67234523 | 67234619 | 67234523 | ID=cds.MS.gene23656.t1;Parent=MS.gene23656.t1 |
| chr8.1 | exon | 67234701 | 67234814 | 67234701 | ID=MS.gene23656.t1.exon3;Parent=MS.gene23656.t1 |
| chr8.1 | CDS | 67234701 | 67234814 | 67234701 | ID=cds.MS.gene23656.t1;Parent=MS.gene23656.t1 |
| chr8.1 | exon | 67234898 | 67235143 | 67234898 | ID=MS.gene23656.t1.exon4;Parent=MS.gene23656.t1 |
| chr8.1 | CDS | 67234898 | 67235143 | 67234898 | ID=cds.MS.gene23656.t1;Parent=MS.gene23656.t1 |
| chr8.1 | exon | 67235882 | 67236000 | 67235882 | ID=MS.gene23656.t1.exon5;Parent=MS.gene23656.t1 |
| chr8.1 | CDS | 67235882 | 67236000 | 67235882 | ID=cds.MS.gene23656.t1;Parent=MS.gene23656.t1 |
| chr8.1 | exon | 67236094 | 67236591 | 67236094 | ID=MS.gene23656.t1.exon6;Parent=MS.gene23656.t1 |
| chr8.1 | CDS | 67236094 | 67236591 | 67236094 | ID=cds.MS.gene23656.t1;Parent=MS.gene23656.t1 |
| chr8.1 | exon | 67236888 | 67236996 | 67236888 | ID=MS.gene23656.t1.exon7;Parent=MS.gene23656.t1 |
| chr8.1 | CDS | 67236888 | 67236996 | 67236888 | ID=cds.MS.gene23656.t1;Parent=MS.gene23656.t1 |
| chr8.1 | exon | 67237113 | 67237693 | 67237113 | ID=MS.gene23656.t1.exon8;Parent=MS.gene23656.t1 |
| chr8.1 | CDS | 67237113 | 67237693 | 67237113 | ID=cds.MS.gene23656.t1;Parent=MS.gene23656.t1 |
| chr8.1 | exon | 67238503 | 67238670 | 67238503 | ID=MS.gene23656.t1.exon9;Parent=MS.gene23656.t1 |
| chr8.1 | CDS | 67238503 | 67238670 | 67238503 | ID=cds.MS.gene23656.t1;Parent=MS.gene23656.t1 |
| chr8.1 | exon | 67238789 | 67238983 | 67238789 | ID=MS.gene23656.t1.exon10;Parent=MS.gene23656.t1 |
| chr8.1 | CDS | 67238789 | 67238983 | 67238789 | ID=cds.MS.gene23656.t1;Parent=MS.gene23656.t1 |
| chr8.1 | exon | 67239404 | 67239464 | 67239404 | ID=MS.gene23656.t1.exon11;Parent=MS.gene23656.t1 |
| chr8.1 | CDS | 67239404 | 67239464 | 67239404 | ID=cds.MS.gene23656.t1;Parent=MS.gene23656.t1 |
| chr8.1 | exon | 67240089 | 67240194 | 67240089 | ID=MS.gene23656.t1.exon12;Parent=MS.gene23656.t1 |
| chr8.1 | CDS | 67240089 | 67240194 | 67240089 | ID=cds.MS.gene23656.t1;Parent=MS.gene23656.t1 |
| chr8.1 | exon | 67241228 | 67241667 | 67241228 | ID=MS.gene23656.t1.exon13;Parent=MS.gene23656.t1 |
| chr8.1 | CDS | 67241228 | 67241667 | 67241228 | ID=cds.MS.gene23656.t1;Parent=MS.gene23656.t1 |
| Gene Sequence |
| Protein sequence |
