Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24068.t1 | XP_013468326.1 | 96.1 | 257 | 10 | 0 | 1 | 257 | 1 | 257 | 3.20E-116 | 427.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24068.t1 | G7ZZJ2 | 96.1 | 257 | 10 | 0 | 1 | 257 | 1 | 257 | 2.3e-116 | 427.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene24068 | -0.802779 | 4.77E-49 | -1.69E-46 |
| MS.gene050612 | MS.gene24068 | -0.808182 | 3.51E-50 | -1.69E-46 |
| MS.gene050772 | MS.gene24068 | -0.803079 | 4.14E-49 | -1.69E-46 |
| MS.gene051509 | MS.gene24068 | -0.801323 | 9.50E-49 | -1.69E-46 |
| MS.gene051874 | MS.gene24068 | -0.819597 | 1.07E-52 | -1.69E-46 |
| MS.gene053420 | MS.gene24068 | 0.81128 | 7.58E-51 | -1.69E-46 |
| MS.gene053916 | MS.gene24068 | -0.805022 | 1.63E-49 | -1.69E-46 |
| MS.gene055722 | MS.gene24068 | -0.803477 | 3.42E-49 | -1.69E-46 |
| MS.gene05592 | MS.gene24068 | -0.802722 | 4.90E-49 | -1.69E-46 |
| MS.gene057086 | MS.gene24068 | -0.810329 | 1.22E-50 | -1.69E-46 |
| MS.gene057331 | MS.gene24068 | -0.80766 | 4.54E-50 | -1.69E-46 |
| MS.gene057926 | MS.gene24068 | -0.811433 | 7.02E-51 | -1.69E-46 |
| MS.gene058723 | MS.gene24068 | -0.800649 | 1.31E-48 | -1.69E-46 |
| MS.gene058978 | MS.gene24068 | 0.941836 | 2.08E-101 | -1.69E-46 |
| MS.gene059022 | MS.gene24068 | -0.80993 | 1.48E-50 | -1.69E-46 |
| MS.gene059865 | MS.gene24068 | -0.808182 | 3.51E-50 | -1.69E-46 |
| MS.gene060982 | MS.gene24068 | -0.800351 | 1.50E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene24068 | MS.gene64517 | PPI |
| MS.gene073852 | MS.gene24068 | PPI |
| MS.gene53776 | MS.gene24068 | PPI |
| MS.gene24068 | MS.gene068527 | PPI |
| MS.gene24068 | MS.gene058978 | PPI |
| MS.gene24068 | MS.gene018558 | PPI |
| MS.gene061900 | MS.gene24068 | PPI |
| MS.gene09850 | MS.gene24068 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24068.t1 | MTR_1g068825 | 96.109 | 257 | 10 | 0 | 1 | 257 | 1 | 257 | 0.0 | 505 |
| MS.gene24068.t1 | MTR_7g099950 | 44.314 | 255 | 125 | 5 | 1 | 243 | 85 | 334 | 4.00e-35 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24068.t1 | AT3G53670 | 40.288 | 139 | 77 | 4 | 78 | 215 | 66 | 199 | 2.09e-14 | 70.5 |
| MS.gene24068.t1 | AT3G53670 | 40.288 | 139 | 77 | 4 | 78 | 215 | 66 | 199 | 2.09e-14 | 70.5 |
| MS.gene24068.t1 | AT2G37480 | 41.732 | 127 | 55 | 4 | 73 | 193 | 58 | 171 | 2.31e-13 | 67.4 |
| MS.gene24068.t1 | AT2G37480 | 40.945 | 127 | 55 | 4 | 73 | 193 | 58 | 170 | 1.78e-12 | 64.7 |
Find 65 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGAAATTGTCTGTTAAA+TGG | 0.168633 | 1.4:+54919729 | MS.gene24068:CDS |
| AATCCTTTGCCACAAGATTC+TGG | 0.274308 | 1.4:-54919926 | None:intergenic |
| GGTAGTAGTAACTGTAATAT+TGG | 0.282358 | 1.4:+54918755 | MS.gene24068:CDS |
| AGTAAACTTGAAATTACTTT+TGG | 0.301816 | 1.4:+54918671 | MS.gene24068:CDS |
| CTTGAAGGCAACACCGTATC+AGG | 0.316264 | 1.4:-54918863 | None:intergenic |
| GTAGTAGTAACTGTAATATT+GGG | 0.335267 | 1.4:+54918756 | MS.gene24068:CDS |
| TTTCTCGCGGCTACCCTTCA+TGG | 0.337552 | 1.4:-54919693 | None:intergenic |
| CACTCTCCTGCGAATGTTGT+GGG | 0.342078 | 1.4:+54918635 | MS.gene24068:CDS |
| TCCGACATGGCAAGGACTTT+CGG | 0.354930 | 1.4:-54920032 | None:intergenic |
| TTAAATAATCTCGACGTTGC+TGG | 0.364240 | 1.4:+54919965 | MS.gene24068:CDS |
| AATGAAATTGTCTGTTAAAT+GGG | 0.413068 | 1.4:+54919730 | MS.gene24068:CDS |
| CAAAGGATTTGATGCTTCAA+TGG | 0.415687 | 1.4:+54919940 | MS.gene24068:CDS |
| AACCTTTCCTTATCCTGATA+CGG | 0.431985 | 1.4:+54918850 | MS.gene24068:CDS |
| TCGCCATCAGAAGAGCTTGA+AGG | 0.452508 | 1.4:-54918878 | None:intergenic |
| CCACTCTCCTGCGAATGTTG+TGG | 0.452810 | 1.4:+54918634 | MS.gene24068:CDS |
| CATATGTGGTGGGTTTGAAC+AGG | 0.469286 | 1.4:+54918787 | MS.gene24068:CDS |
| TCCAGACTCGGTTTCTCAGC+CGG | 0.470198 | 1.4:+54918943 | MS.gene24068:CDS |
| ACCGGCTGAGAAACCGAGTC+TGG | 0.472530 | 1.4:-54918944 | None:intergenic |
| GACTTATGCAGTCTTGATAT+AGG | 0.475805 | 1.4:-54920086 | None:intergenic |
| TGGCAAGGACTTTCGGTAGC+TGG | 0.476961 | 1.4:-54920025 | None:intergenic |
| AGAAGCAGTATCGCTATAGA+TGG | 0.477970 | 1.4:+54919903 | MS.gene24068:CDS |
| CTCTACACAACTTCCAGACT+CGG | 0.490684 | 1.4:+54918931 | MS.gene24068:CDS |
| GGCAACACCGTATCAGGATA+AGG | 0.496540 | 1.4:-54918857 | None:intergenic |
| GGCACCGGATCATACACATC+AGG | 0.503927 | 1.4:-54919755 | None:intergenic |
| CAGAAGGGCAGCTATTCTAA+AGG | 0.505063 | 1.4:+54919863 | MS.gene24068:CDS |
| TCTGATGGCGAGGAGGCTGA+TGG | 0.508008 | 1.4:+54918890 | MS.gene24068:CDS |
| ATGTTGTTTCTTAGTTCTCA+CGG | 0.517557 | 1.4:-54919795 | None:intergenic |
| ACTAAAAGTGAGGAGCTTGA+AGG | 0.525677 | 1.4:+54918820 | MS.gene24068:CDS |
| AGAAGGGCAGCTATTCTAAA+GGG | 0.525902 | 1.4:+54919864 | MS.gene24068:CDS |
| AAAACTTGTATCTGCCATGA+AGG | 0.537609 | 1.4:+54919679 | MS.gene24068:CDS |
| TTGCCTTCAAGCTCTTCTGA+TGG | 0.541380 | 1.4:+54918875 | MS.gene24068:CDS |
| GGGTAGCCGCGAGAAACACT+TGG | 0.556191 | 1.4:+54919700 | MS.gene24068:CDS |
| TGGCCAGAATCTTGTGGCAA+AGG | 0.557338 | 1.4:+54919923 | MS.gene24068:CDS |
| TGCTCATAGCTTCTCCGACA+TGG | 0.557738 | 1.4:-54920045 | None:intergenic |
| TTCAAGCTCTTCTGATGGCG+AGG | 0.562911 | 1.4:+54918880 | MS.gene24068:CDS |
| AGGTGTAAAGAAAAGTCAGA+AGG | 0.565051 | 1.4:+54919847 | MS.gene24068:CDS |
| TCGCACCCCACAACATTCGC+AGG | 0.577188 | 1.4:-54918641 | None:intergenic |
| CTAAGAAACAACATAAATCC+CGG | 0.580812 | 1.4:+54919804 | MS.gene24068:CDS |
| CCACAACATTCGCAGGAGAG+TGG | 0.589259 | 1.4:-54918634 | None:intergenic |
| ATTGGGGAGGGACACATATG+TGG | 0.592835 | 1.4:+54918773 | MS.gene24068:CDS |
| ATAGCTTCTCCGACATGGCA+AGG | 0.593291 | 1.4:-54920040 | None:intergenic |
| AGTAACTGTAATATTGGGGA+GGG | 0.594128 | 1.4:+54918761 | MS.gene24068:CDS |
| GGCCCCTGATGTGTATGATC+CGG | 0.600130 | 1.4:+54919751 | MS.gene24068:CDS |
| ATCAAGAAGAGTGAAAAGAA+AGG | 0.600790 | 1.4:+54919827 | MS.gene24068:CDS |
| TGTGACGACAATGTTGGCAC+CGG | 0.602355 | 1.4:-54919770 | None:intergenic |
| TAGTAGTAACTGTAATATTG+GGG | 0.605374 | 1.4:+54918757 | MS.gene24068:CDS |
| TGATATAGGAGACAAAATCA+AGG | 0.608502 | 1.4:-54920072 | None:intergenic |
| GGTGTAAAGAAAAGTCAGAA+GGG | 0.615586 | 1.4:+54919848 | MS.gene24068:CDS |
| GGGGAGGGACACATATGTGG+TGG | 0.617375 | 1.4:+54918776 | MS.gene24068:CDS |
| ACGGTATGTGACGACAATGT+TGG | 0.618744 | 1.4:-54919776 | None:intergenic |
| GGGAGGGACACATATGTGGT+GGG | 0.620596 | 1.4:+54918777 | MS.gene24068:CDS |
| AAACTTGTATCTGCCATGAA+GGG | 0.622758 | 1.4:+54919680 | MS.gene24068:CDS |
| GCACCGGATCATACACATCA+GGG | 0.623292 | 1.4:-54919754 | None:intergenic |
| ACCGAAAGTCCTTGCCATGT+CGG | 0.626598 | 1.4:+54920031 | MS.gene24068:CDS |
| CACCGTATCAGGATAAGGAA+AGG | 0.628831 | 1.4:-54918852 | None:intergenic |
| TATAGATGGCCAGAATCTTG+TGG | 0.629442 | 1.4:+54919917 | MS.gene24068:CDS |
| GGTAGCCGCGAGAAACACTT+GGG | 0.637014 | 1.4:+54919701 | MS.gene24068:CDS |
| AAGCTCTTCTGATGGCGAGG+AGG | 0.637217 | 1.4:+54918883 | MS.gene24068:CDS |
| TAGTAACTGTAATATTGGGG+AGG | 0.638150 | 1.4:+54918760 | MS.gene24068:CDS |
| ACTCTCCTGCGAATGTTGTG+GGG | 0.649280 | 1.4:+54918636 | MS.gene24068:CDS |
| ACATGTATCTGATGATGATG+AGG | 0.654147 | 1.4:+54918730 | MS.gene24068:CDS |
| AAGAAACCACACTAAAAGTG+AGG | 0.668513 | 1.4:+54918810 | MS.gene24068:CDS |
| GCGATCCCAAGTGTTTCTCG+CGG | 0.669443 | 1.4:-54919706 | None:intergenic |
| CACCGGATCATACACATCAG+GGG | 0.699399 | 1.4:-54919753 | None:intergenic |
| GTATCTGATGATGATGAGGA+TGG | 0.713196 | 1.4:+54918734 | MS.gene24068:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACATACACTTTATTTTAAA+TGG | + | chr1.4:54919450-54919469 | MS.gene24068:intron | 15.0% |
| !!! | ACATACACTTTATTTTAAAT+GGG | + | chr1.4:54919451-54919470 | MS.gene24068:intron | 15.0% |
| !! | AAATGAAATTGTCTGTTAAA+TGG | + | chr1.4:54919729-54919748 | MS.gene24068:CDS | 20.0% |
| !! | AATGAAATTGTCTGTTAAAT+GGG | + | chr1.4:54919730-54919749 | MS.gene24068:CDS | 20.0% |
| !! | TAAGAAATGTAGTTTATGTT+TGG | + | chr1.4:54919018-54919037 | MS.gene24068:intron | 20.0% |
| !!! | ACTTTATTTTAAATGGGAAA+GGG | + | chr1.4:54919457-54919476 | MS.gene24068:intron | 20.0% |
| !!! | AGTAAACTTGAAATTACTTT+TGG | + | chr1.4:54918671-54918690 | MS.gene24068:CDS | 20.0% |
| ! | AAATGTAGTTTATGTTTGGA+CGG | + | chr1.4:54919022-54919041 | MS.gene24068:intron | 25.0% |
| ! | AAGTGTATGTTTGTATCATA+TGG | - | chr1.4:54919202-54919221 | None:intergenic | 25.0% |
| ! | GTAGTAGTAACTGTAATATT+GGG | + | chr1.4:54918756-54918775 | MS.gene24068:CDS | 25.0% |
| ! | TAGTAGTAACTGTAATATTG+GGG | + | chr1.4:54918757-54918776 | MS.gene24068:CDS | 25.0% |
| !! | AGTGTATGTTTTGTATCATA+TGG | - | chr1.4:54919440-54919459 | None:intergenic | 25.0% |
| !! | TATGTTTTGTATCATATGGA+GGG | - | chr1.4:54919436-54919455 | None:intergenic | 25.0% |
| !!! | AAACTTGAAATTACTTTTGG+TGG | + | chr1.4:54918674-54918693 | MS.gene24068:CDS | 25.0% |
| !!! | AACTTGAAATTACTTTTGGT+GGG | + | chr1.4:54918675-54918694 | MS.gene24068:CDS | 25.0% |
| !!! | ACATACACTTTATTTTGAAG+TGG | + | chr1.4:54919212-54919231 | MS.gene24068:intron | 25.0% |
| !!! | CACTTTATTTTAAATGGGAA+AGG | + | chr1.4:54919456-54919475 | MS.gene24068:intron | 25.0% |
| ATCAAGAAGAGTGAAAAGAA+AGG | + | chr1.4:54919827-54919846 | MS.gene24068:CDS | 30.0% | |
| CTAAGAAACAACATAAATCC+CGG | + | chr1.4:54919804-54919823 | MS.gene24068:CDS | 30.0% | |
| GGTAGTAGTAACTGTAATAT+TGG | + | chr1.4:54918755-54918774 | MS.gene24068:CDS | 30.0% | |
| GTATGTTTGTATCATATGGT+GGG | - | chr1.4:54919198-54919217 | None:intergenic | 30.0% | |
| TGAACACAATTAGAACTTAC+CGG | - | chr1.4:54918965-54918984 | None:intergenic | 30.0% | |
| TGATATAGGAGACAAAATCA+AGG | - | chr1.4:54920075-54920094 | None:intergenic | 30.0% | |
| TGTATGTTTGTATCATATGG+TGG | - | chr1.4:54919199-54919218 | None:intergenic | 30.0% | |
| ! | GTATGTTTTGTATCATATGG+AGG | - | chr1.4:54919437-54919456 | None:intergenic | 30.0% |
| ! | TTATGCTAGATGCATTGTTT+TGG | + | chr1.4:54919340-54919359 | MS.gene24068:intron | 30.0% |
| ! | TTTTCTCTGTATTATACCAC+AGG | + | chr1.4:54919649-54919668 | MS.gene24068:intron | 30.0% |
| !! | ATGTTGTTTCTTAGTTCTCA+CGG | - | chr1.4:54919798-54919817 | None:intergenic | 30.0% |
| !! | GAAAGAACTTTTGACTCATT+CGG | + | chr1.4:54919234-54919253 | MS.gene24068:intron | 30.0% |
| !!! | ATAGTTTTGTCGAGCATAAT+TGG | + | chr1.4:54919590-54919609 | MS.gene24068:intron | 30.0% |
| AAAACTTGTATCTGCCATGA+AGG | + | chr1.4:54919679-54919698 | MS.gene24068:CDS | 35.0% | |
| AAACTTGTATCTGCCATGAA+GGG | + | chr1.4:54919680-54919699 | MS.gene24068:CDS | 35.0% | |
| AACCTTTCCTTATCCTGATA+CGG | + | chr1.4:54918850-54918869 | MS.gene24068:CDS | 35.0% | |
| AAGAAACCACACTAAAAGTG+AGG | + | chr1.4:54918810-54918829 | MS.gene24068:CDS | 35.0% | |
| AGGTGTAAAGAAAAGTCAGA+AGG | + | chr1.4:54919847-54919866 | MS.gene24068:CDS | 35.0% | |
| AGTAACTGTAATATTGGGGA+GGG | + | chr1.4:54918761-54918780 | MS.gene24068:CDS | 35.0% | |
| ATGCAGCTTTCACATAATCA+CGG | + | chr1.4:54919387-54919406 | MS.gene24068:intron | 35.0% | |
| CAAAGGATTTGATGCTTCAA+TGG | + | chr1.4:54919940-54919959 | MS.gene24068:CDS | 35.0% | |
| CTCATTCAACAAATAGAAGC+TGG | + | chr1.4:54919486-54919505 | MS.gene24068:intron | 35.0% | |
| GAAATTACTGTGAACAACTG+TGG | + | chr1.4:54919101-54919120 | MS.gene24068:intron | 35.0% | |
| GGTGTAAAGAAAAGTCAGAA+GGG | + | chr1.4:54919848-54919867 | MS.gene24068:CDS | 35.0% | |
| TAGTAACTGTAATATTGGGG+AGG | + | chr1.4:54918760-54918779 | MS.gene24068:CDS | 35.0% | |
| TTAAATAATCTCGACGTTGC+TGG | + | chr1.4:54919965-54919984 | MS.gene24068:CDS | 35.0% | |
| TTGTAGCTTTCACACAATCA+CGG | + | chr1.4:54919149-54919168 | MS.gene24068:intron | 35.0% | |
| ! | ACATGTATCTGATGATGATG+AGG | + | chr1.4:54918730-54918749 | MS.gene24068:CDS | 35.0% |
| ! | CTAAAGCTTTTGCAAAACCA+CGG | - | chr1.4:54919074-54919093 | None:intergenic | 35.0% |
| ! | TCTTTTCACTCTTCTTGATC+CGG | - | chr1.4:54919826-54919845 | None:intergenic | 35.0% |
| !!! | TTGTTTTGGTCGAGCATAAT+TGG | + | chr1.4:54919354-54919373 | MS.gene24068:intron | 35.0% |
| !!! | TTTTTGAGATGCTAGTTGCA+TGG | - | chr1.4:54920003-54920022 | None:intergenic | 35.0% |
| AATCCTTTGCCACAAGATTC+TGG | - | chr1.4:54919929-54919948 | None:intergenic | 40.0% | |
| ACGGTTGCCCATAATGATTT+CGG | - | chr1.4:54919055-54919074 | None:intergenic | 40.0% | |
| ACTAAAAGTGAGGAGCTTGA+AGG | + | chr1.4:54918820-54918839 | MS.gene24068:CDS | 40.0% | |
| AGAAGCAGTATCGCTATAGA+TGG | + | chr1.4:54919903-54919922 | MS.gene24068:CDS | 40.0% | |
| AGAAGGGCAGCTATTCTAAA+GGG | + | chr1.4:54919864-54919883 | MS.gene24068:CDS | 40.0% | |
| GTAGTTTATGTTTGGACGGT+GGG | + | chr1.4:54919026-54919045 | MS.gene24068:intron | 40.0% | |
| TATAGATGGCCAGAATCTTG+TGG | + | chr1.4:54919917-54919936 | MS.gene24068:CDS | 40.0% | |
| TGGGTTGCCGAAATCATTAT+GGG | + | chr1.4:54919045-54919064 | MS.gene24068:intron | 40.0% | |
| TGTAGTTTATGTTTGGACGG+TGG | + | chr1.4:54919025-54919044 | MS.gene24068:intron | 40.0% | |
| ! | ATGGCAGATACAAGTTTTGC+AGG | - | chr1.4:54919677-54919696 | None:intergenic | 40.0% |
| ! | CTTTTCACTCTTCTTGATCC+GGG | - | chr1.4:54919825-54919844 | None:intergenic | 40.0% |
| ! | GTATCTGATGATGATGAGGA+TGG | + | chr1.4:54918734-54918753 | MS.gene24068:CDS | 40.0% |
| AACTACTTTCCACCCCCATT+GGG | - | chr1.4:54919516-54919535 | None:intergenic | 45.0% | |
| ACGGTATGTGACGACAATGT+TGG | - | chr1.4:54919779-54919798 | None:intergenic | 45.0% | |
| ACGGTTGCTAGCCATGATTT+CGG | + | chr1.4:54919168-54919187 | MS.gene24068:intron | 45.0% | |
| CACCGTATCAGGATAAGGAA+AGG | - | chr1.4:54918855-54918874 | None:intergenic | 45.0% | |
| CAGAAGGGCAGCTATTCTAA+AGG | + | chr1.4:54919863-54919882 | MS.gene24068:CDS | 45.0% | |
| CTCTACACAACTTCCAGACT+CGG | + | chr1.4:54918931-54918950 | MS.gene24068:CDS | 45.0% | |
| GAAATCATTATGGGCAACCG+TGG | + | chr1.4:54919054-54919073 | MS.gene24068:intron | 45.0% | |
| TCATTCGGCAGATAGAAAGC+TGG | + | chr1.4:54919249-54919268 | MS.gene24068:intron | 45.0% | |
| TTGCCTTCAAGCTCTTCTGA+TGG | + | chr1.4:54918875-54918894 | MS.gene24068:CDS | 45.0% | |
| ! | GTGGGTTGCCGAAATCATTA+TGG | + | chr1.4:54919044-54919063 | MS.gene24068:intron | 45.0% |
| !! | CAAGCTCCTCACTTTTAGTG+TGG | - | chr1.4:54918819-54918838 | None:intergenic | 45.0% |
| !! | CATATGTGGTGGGTTTGAAC+AGG | + | chr1.4:54918787-54918806 | MS.gene24068:CDS | 45.0% |
| ACCGAAAGTCCTTGCCATGT+CGG | + | chr1.4:54920031-54920050 | MS.gene24068:CDS | 50.0% | |
| ACTACTTTCCACCCCCATTG+GGG | - | chr1.4:54919515-54919534 | None:intergenic | 50.0% | |
| ACTCTCCTGCGAATGTTGTG+GGG | + | chr1.4:54918636-54918655 | MS.gene24068:CDS | 50.0% | |
| ATAGAAAGCTGGTCGCTCCA+AGG | + | chr1.4:54919260-54919279 | MS.gene24068:intron | 50.0% | |
| ATAGAAGCTGGTCACCCCAA+TGG | + | chr1.4:54919498-54919517 | MS.gene24068:intron | 50.0% | |
| ATAGCTTCTCCGACATGGCA+AGG | - | chr1.4:54920043-54920062 | None:intergenic | 50.0% | |
| ATTGGGGAGGGACACATATG+TGG | + | chr1.4:54918773-54918792 | MS.gene24068:CDS | 50.0% | |
| CAACTACTTTCCACCCCCAT+TGG | - | chr1.4:54919517-54919536 | None:intergenic | 50.0% | |
| CAATGGGGGTGGAAAGTAGT+TGG | + | chr1.4:54919515-54919534 | MS.gene24068:intron | 50.0% | |
| CACCGGATCATACACATCAG+GGG | - | chr1.4:54919756-54919775 | None:intergenic | 50.0% | |
| CACTCTCCTGCGAATGTTGT+GGG | + | chr1.4:54918635-54918654 | MS.gene24068:CDS | 50.0% | |
| CTTGAAGGCAACACCGTATC+AGG | - | chr1.4:54918866-54918885 | None:intergenic | 50.0% | |
| GCACCGGATCATACACATCA+GGG | - | chr1.4:54919757-54919776 | None:intergenic | 50.0% | |
| GGCAACACCGTATCAGGATA+AGG | - | chr1.4:54918860-54918879 | None:intergenic | 50.0% | |
| TAGAAAGCTGGTCGCTCCAA+GGG | + | chr1.4:54919261-54919280 | MS.gene24068:intron | 50.0% | |
| TAGAAGCTGGTCACCCCAAT+GGG | + | chr1.4:54919499-54919518 | MS.gene24068:intron | 50.0% | |
| TCCGACATGGCAAGGACTTT+CGG | - | chr1.4:54920035-54920054 | None:intergenic | 50.0% | |
| TCGCCATCAGAAGAGCTTGA+AGG | - | chr1.4:54918881-54918900 | None:intergenic | 50.0% | |
| TGCTCATAGCTTCTCCGACA+TGG | - | chr1.4:54920048-54920067 | None:intergenic | 50.0% | |
| TGGCCAGAATCTTGTGGCAA+AGG | + | chr1.4:54919923-54919942 | MS.gene24068:CDS | 50.0% | |
| TGTGACGACAATGTTGGCAC+CGG | - | chr1.4:54919773-54919792 | None:intergenic | 50.0% | |
| ! | ACAAGTTTTGCAGGTGCCTG+TGG | - | chr1.4:54919668-54919687 | None:intergenic | 50.0% |
| ! | TTCAAGCTCTTCTGATGGCG+AGG | + | chr1.4:54918880-54918899 | MS.gene24068:CDS | 50.0% |
| !! | TGGTGGGTTAGCCGAAATCA+TGG | - | chr1.4:54919182-54919201 | None:intergenic | 50.0% |
| AGAAAGCTGGTCGCTCCAAG+GGG | + | chr1.4:54919262-54919281 | MS.gene24068:intron | 55.0% | |
| AGAAGCTGGTCACCCCAATG+GGG | + | chr1.4:54919500-54919519 | MS.gene24068:intron | 55.0% | |
| CAACTACTTTCCACCCCCCT+TGG | - | chr1.4:54919280-54919299 | None:intergenic | 55.0% | |
| CAAGGGGGGTGGAAAGTAGT+TGG | + | chr1.4:54919278-54919297 | MS.gene24068:intron | 55.0% | |
| CCACAACATTCGCAGGAGAG+TGG | - | chr1.4:54918637-54918656 | None:intergenic | 55.0% | |
| CCACTCTCCTGCGAATGTTG+TGG | + | chr1.4:54918634-54918653 | MS.gene24068:CDS | 55.0% | |
| GCGATCCCAAGTGTTTCTCG+CGG | - | chr1.4:54919709-54919728 | None:intergenic | 55.0% | |
| GGCCCCTGATGTGTATGATC+CGG | + | chr1.4:54919751-54919770 | MS.gene24068:CDS | 55.0% | |
| GGGAGGGACACATATGTGGT+GGG | + | chr1.4:54918777-54918796 | MS.gene24068:CDS | 55.0% | |
| GGTAGCCGCGAGAAACACTT+GGG | + | chr1.4:54919701-54919720 | MS.gene24068:CDS | 55.0% | |
| TGGCAAGGACTTTCGGTAGC+TGG | - | chr1.4:54920028-54920047 | None:intergenic | 55.0% | |
| TTTCTCGCGGCTACCCTTCA+TGG | - | chr1.4:54919696-54919715 | None:intergenic | 55.0% | |
| ! | AAGCTCTTCTGATGGCGAGG+AGG | + | chr1.4:54918883-54918902 | MS.gene24068:CDS | 55.0% |
| ! | GGCACCGGATCATACACATC+AGG | - | chr1.4:54919758-54919777 | None:intergenic | 55.0% |
| ! | TCCAGACTCGGTTTCTCAGC+CGG | + | chr1.4:54918943-54918962 | MS.gene24068:CDS | 55.0% |
| AAAGCTGGTCGCTCCAAGGG+GGG | + | chr1.4:54919264-54919283 | MS.gene24068:intron | 60.0% | |
| ACCGGCTGAGAAACCGAGTC+TGG | - | chr1.4:54918947-54918966 | None:intergenic | 60.0% | |
| GAAAGCTGGTCGCTCCAAGG+GGG | + | chr1.4:54919263-54919282 | MS.gene24068:intron | 60.0% | |
| GAAGCTGGTCACCCCAATGG+GGG | + | chr1.4:54919501-54919520 | MS.gene24068:intron | 60.0% | |
| GGGGAGGGACACATATGTGG+TGG | + | chr1.4:54918776-54918795 | MS.gene24068:CDS | 60.0% | |
| GGGTAGCCGCGAGAAACACT+TGG | + | chr1.4:54919700-54919719 | MS.gene24068:CDS | 60.0% | |
| TCGCACCCCACAACATTCGC+AGG | - | chr1.4:54918644-54918663 | None:intergenic | 60.0% | |
| ! | TCTGATGGCGAGGAGGCTGA+TGG | + | chr1.4:54918890-54918909 | MS.gene24068:CDS | 60.0% |
| GCTGGTCACCCCAATGGGGG+TGG | + | chr1.4:54919504-54919523 | MS.gene24068:intron | 70.0% | |
| GCTGGTCGCTCCAAGGGGGG+TGG | + | chr1.4:54919267-54919286 | MS.gene24068:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 54918626 | 54920105 | 54918626 | ID=MS.gene24068 |
| chr1.4 | mRNA | 54918626 | 54920105 | 54918626 | ID=MS.gene24068.t1;Parent=MS.gene24068 |
| chr1.4 | exon | 54918626 | 54918964 | 54918626 | ID=MS.gene24068.t1.exon1;Parent=MS.gene24068.t1 |
| chr1.4 | CDS | 54918626 | 54918964 | 54918626 | ID=cds.MS.gene24068.t1;Parent=MS.gene24068.t1 |
| chr1.4 | exon | 54919671 | 54920105 | 54919671 | ID=MS.gene24068.t1.exon2;Parent=MS.gene24068.t1 |
| chr1.4 | CDS | 54919671 | 54920105 | 54919671 | ID=cds.MS.gene24068.t1;Parent=MS.gene24068.t1 |
| Gene Sequence |
| Protein sequence |
