Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073852.t1 | XP_013468326.1 | 96.5 | 257 | 9 | 0 | 1 | 257 | 1 | 257 | 8.50E-117 | 429.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073852.t1 | G7ZZJ2 | 96.5 | 257 | 9 | 0 | 1 | 257 | 1 | 257 | 6.1e-117 | 429.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene073852 | -0.823599 | 1.27E-53 | -1.69E-46 |
| MS.gene049217 | MS.gene073852 | -0.806084 | 9.77E-50 | -1.69E-46 |
| MS.gene049232 | MS.gene073852 | -0.839249 | 1.77E-57 | -1.69E-46 |
| MS.gene049285 | MS.gene073852 | -0.820014 | 8.58E-53 | -1.69E-46 |
| MS.gene049320 | MS.gene073852 | -0.80905 | 2.29E-50 | -1.69E-46 |
| MS.gene049609 | MS.gene073852 | -0.803806 | 2.92E-49 | -1.69E-46 |
| MS.gene05010 | MS.gene073852 | -0.839512 | 1.52E-57 | -1.69E-46 |
| MS.gene050165 | MS.gene073852 | -0.80074 | 1.25E-48 | -1.69E-46 |
| MS.gene050170 | MS.gene073852 | -0.808166 | 3.54E-50 | -1.69E-46 |
| MS.gene050216 | MS.gene073852 | -0.817515 | 3.17E-52 | -1.69E-46 |
| MS.gene050323 | MS.gene073852 | -0.811702 | 6.13E-51 | -1.69E-46 |
| MS.gene050333 | MS.gene073852 | -0.801273 | 9.73E-49 | -1.69E-46 |
| MS.gene050363 | MS.gene073852 | 0.802686 | 4.99E-49 | -1.69E-46 |
| MS.gene050381 | MS.gene073852 | 0.826809 | 2.21E-54 | -1.69E-46 |
| MS.gene050496 | MS.gene073852 | -0.818702 | 1.71E-52 | -1.69E-46 |
| MS.gene050504 | MS.gene073852 | -0.839472 | 1.55E-57 | -1.69E-46 |
| MS.gene050612 | MS.gene073852 | -0.835723 | 1.42E-56 | -1.69E-46 |
| MS.gene050675 | MS.gene073852 | -0.814612 | 1.41E-51 | -1.69E-46 |
| MS.gene050772 | MS.gene073852 | -0.815427 | 9.29E-52 | -1.69E-46 |
| MS.gene05080 | MS.gene073852 | -0.805327 | 1.41E-49 | -1.69E-46 |
| MS.gene050868 | MS.gene073852 | -0.838559 | 2.68E-57 | -1.69E-46 |
| MS.gene050871 | MS.gene073852 | -0.838191 | 3.33E-57 | -1.69E-46 |
| MS.gene050986 | MS.gene073852 | -0.845065 | 5.12E-59 | -1.69E-46 |
| MS.gene051127 | MS.gene073852 | 0.814941 | 1.19E-51 | -1.69E-46 |
| MS.gene051268 | MS.gene073852 | -0.828835 | 7.21E-55 | -1.69E-46 |
| MS.gene051509 | MS.gene073852 | -0.826594 | 2.49E-54 | -1.69E-46 |
| MS.gene051874 | MS.gene073852 | -0.807827 | 4.18E-50 | -1.69E-46 |
| MS.gene052164 | MS.gene073852 | -0.836606 | 8.48E-57 | -1.69E-46 |
| MS.gene052482 | MS.gene073852 | -0.802521 | 5.39E-49 | -1.69E-46 |
| MS.gene052486 | MS.gene073852 | -0.808879 | 2.49E-50 | -1.69E-46 |
| MS.gene052966 | MS.gene073852 | -0.831772 | 1.38E-55 | -1.69E-46 |
| MS.gene053420 | MS.gene073852 | 0.837681 | 4.50E-57 | -1.69E-46 |
| MS.gene053561 | MS.gene073852 | 0.807258 | 5.52E-50 | -1.69E-46 |
| MS.gene053574 | MS.gene073852 | -0.81236 | 4.41E-51 | -1.69E-46 |
| MS.gene053824 | MS.gene073852 | -0.82239 | 2.43E-53 | -1.69E-46 |
| MS.gene054595 | MS.gene073852 | -0.807405 | 5.14E-50 | -1.69E-46 |
| MS.gene054600 | MS.gene073852 | -0.809029 | 2.32E-50 | -1.69E-46 |
| MS.gene054616 | MS.gene073852 | 0.816656 | 4.94E-52 | -1.69E-46 |
| MS.gene054642 | MS.gene073852 | -0.806218 | 9.15E-50 | -1.69E-46 |
| MS.gene054954 | MS.gene073852 | -0.831437 | 1.67E-55 | -1.69E-46 |
| MS.gene055154 | MS.gene073852 | 0.800896 | 1.16E-48 | -1.69E-46 |
| MS.gene055224 | MS.gene073852 | -0.807495 | 4.92E-50 | -1.69E-46 |
| MS.gene055362 | MS.gene073852 | -0.826679 | 2.38E-54 | -1.69E-46 |
| MS.gene055502 | MS.gene073852 | -0.804638 | 1.96E-49 | -1.69E-46 |
| MS.gene055577 | MS.gene073852 | -0.830964 | 2.18E-55 | -1.69E-46 |
| MS.gene055722 | MS.gene073852 | -0.805741 | 1.15E-49 | -1.69E-46 |
| MS.gene055750 | MS.gene073852 | -0.801808 | 7.56E-49 | -1.69E-46 |
| MS.gene055751 | MS.gene073852 | -0.809018 | 2.33E-50 | -1.69E-46 |
| MS.gene055776 | MS.gene073852 | -0.807766 | 4.31E-50 | -1.69E-46 |
| MS.gene05589 | MS.gene073852 | -0.83561 | 1.52E-56 | -1.69E-46 |
| MS.gene055941 | MS.gene073852 | -0.801278 | 9.71E-49 | -1.69E-46 |
| MS.gene056504 | MS.gene073852 | -0.844834 | 5.92E-59 | -1.69E-46 |
| MS.gene056657 | MS.gene073852 | -0.808532 | 2.96E-50 | -1.69E-46 |
| MS.gene057086 | MS.gene073852 | -0.833721 | 4.53E-56 | -1.69E-46 |
| MS.gene057473 | MS.gene073852 | 0.808871 | 2.50E-50 | -1.69E-46 |
| MS.gene05837 | MS.gene073852 | -0.804002 | 2.66E-49 | -1.69E-46 |
| MS.gene058419 | MS.gene073852 | -0.803037 | 4.22E-49 | -1.69E-46 |
| MS.gene058773 | MS.gene073852 | -0.8232 | 1.57E-53 | -1.69E-46 |
| MS.gene058978 | MS.gene073852 | 0.991363 | 2.98E-187 | -1.69E-46 |
| MS.gene059022 | MS.gene073852 | -0.851481 | 8.63E-61 | -1.69E-46 |
| MS.gene059023 | MS.gene073852 | -0.830001 | 3.75E-55 | -1.69E-46 |
| MS.gene05913 | MS.gene073852 | -0.800265 | 1.56E-48 | -1.69E-46 |
| MS.gene059367 | MS.gene073852 | -0.826338 | 2.87E-54 | -1.69E-46 |
| MS.gene059677 | MS.gene073852 | -0.812589 | 3.93E-51 | -1.69E-46 |
| MS.gene059680 | MS.gene073852 | -0.813011 | 3.18E-51 | -1.69E-46 |
| MS.gene059718 | MS.gene073852 | -0.807826 | 4.18E-50 | -1.69E-46 |
| MS.gene059865 | MS.gene073852 | -0.850005 | 2.25E-60 | -1.69E-46 |
| MS.gene06000 | MS.gene073852 | -0.802617 | 5.15E-49 | -1.69E-46 |
| MS.gene060703 | MS.gene073852 | -0.83801 | 3.71E-57 | -1.69E-46 |
| MS.gene060762 | MS.gene073852 | -0.830291 | 3.19E-55 | -1.69E-46 |
| MS.gene060778 | MS.gene073852 | -0.82778 | 1.30E-54 | -1.69E-46 |
| MS.gene06077 | MS.gene073852 | -0.837012 | 6.68E-57 | -1.69E-46 |
| MS.gene060982 | MS.gene073852 | -0.84035 | 9.17E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene073852 | MS.gene058978 | PPI |
| MS.gene073852 | MS.gene018558 | PPI |
| MS.gene073852 | MS.gene53776 | PPI |
| MS.gene53776 | MS.gene073852 | PPI |
| MS.gene073852 | MS.gene24068 | PPI |
| MS.gene073852 | MS.gene64517 | PPI |
| MS.gene061900 | MS.gene073852 | PPI |
| MS.gene09850 | MS.gene073852 | PPI |
| MS.gene073852 | MS.gene068527 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073852.t1 | MTR_1g068825 | 96.498 | 257 | 9 | 0 | 1 | 257 | 1 | 257 | 0.0 | 507 |
| MS.gene073852.t1 | MTR_7g099950 | 44.314 | 255 | 125 | 5 | 1 | 243 | 85 | 334 | 4.13e-35 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073852.t1 | AT3G53670 | 41.007 | 139 | 76 | 4 | 78 | 215 | 66 | 199 | 2.71e-15 | 72.8 |
| MS.gene073852.t1 | AT3G53670 | 41.007 | 139 | 76 | 4 | 78 | 215 | 66 | 199 | 2.71e-15 | 72.8 |
| MS.gene073852.t1 | AT2G37480 | 42.520 | 127 | 54 | 4 | 73 | 193 | 58 | 171 | 2.70e-14 | 69.7 |
| MS.gene073852.t1 | AT2G37480 | 41.732 | 127 | 54 | 4 | 73 | 193 | 58 | 170 | 1.94e-13 | 67.4 |
Find 63 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGAAATTGTCTGTTAAA+TGG | 0.168633 | 1.3:+47910880 | MS.gene073852:CDS |
| AATCCTTTGCCACAAGATTC+TGG | 0.274308 | 1.3:-47911077 | None:intergenic |
| GGTAGTAGTAACTGTAATAT+TGG | 0.282358 | 1.3:+47909906 | MS.gene073852:CDS |
| AGTAAACTTGAAATTACTTT+TGG | 0.301816 | 1.3:+47909822 | MS.gene073852:CDS |
| CTTGAAGGCAACACCGTATC+AGG | 0.316264 | 1.3:-47910014 | None:intergenic |
| GTAGTAGTAACTGTAATATT+GGG | 0.335267 | 1.3:+47909907 | MS.gene073852:CDS |
| TTTCTCGCGGCTACCCTTCA+TGG | 0.337552 | 1.3:-47910844 | None:intergenic |
| TCCGACATGGCAAGGACTTT+CGG | 0.354930 | 1.3:-47911183 | None:intergenic |
| CACTCTCCTGCGAATGTTGT+CGG | 0.355819 | 1.3:+47909786 | MS.gene073852:CDS |
| TTAAATAATCTCGACGTTGC+TGG | 0.364240 | 1.3:+47911116 | MS.gene073852:CDS |
| AATGAAATTGTCTGTTAAAT+GGG | 0.413068 | 1.3:+47910881 | MS.gene073852:CDS |
| CAAAGGATTTGATGCTTCAA+TGG | 0.415687 | 1.3:+47911091 | MS.gene073852:CDS |
| AACCTTTCCTTATCCTGATA+CGG | 0.431985 | 1.3:+47910001 | MS.gene073852:CDS |
| TCGTCATCAGAAGAGCTTGA+AGG | 0.452918 | 1.3:-47910029 | None:intergenic |
| CATATGTGGTGGGTTTGAAC+AGG | 0.469286 | 1.3:+47909938 | MS.gene073852:CDS |
| TCCAGACTCGGTTTCTCAGC+CGG | 0.470198 | 1.3:+47910094 | MS.gene073852:CDS |
| ACCGGCTGAGAAACCGAGTC+TGG | 0.472530 | 1.3:-47910095 | None:intergenic |
| ACTCTCCTGCGAATGTTGTC+GGG | 0.473024 | 1.3:+47909787 | MS.gene073852:CDS |
| GACTTATGCAGTCTTGATAT+AGG | 0.475805 | 1.3:-47911237 | None:intergenic |
| TGGCAAGGACTTTCGGTAGC+TGG | 0.476961 | 1.3:-47911176 | None:intergenic |
| AGAAGCAGTATCGCTATAGA+TGG | 0.477970 | 1.3:+47911054 | MS.gene073852:CDS |
| TCTGATGACGAGGAGGCTGA+TGG | 0.485008 | 1.3:+47910041 | MS.gene073852:CDS |
| CTCTACACAACTTCCAGACT+CGG | 0.490684 | 1.3:+47910082 | MS.gene073852:CDS |
| GGCAACACCGTATCAGGATA+AGG | 0.496540 | 1.3:-47910008 | None:intergenic |
| GGCACCGGATCATACACATC+AGG | 0.503927 | 1.3:-47910906 | None:intergenic |
| CAGAAGGGCAGCTATTCTAA+AGG | 0.505063 | 1.3:+47911014 | MS.gene073852:CDS |
| ATGTTGTTTCTTAGTTCTCA+CGG | 0.517557 | 1.3:-47910946 | None:intergenic |
| ACTAAAAGTGAGGAGCTTGA+AGG | 0.525677 | 1.3:+47909971 | MS.gene073852:CDS |
| AGAAGGGCAGCTATTCTAAA+GGG | 0.525902 | 1.3:+47911015 | MS.gene073852:CDS |
| AAAACTTGTATCTGCCATGA+AGG | 0.537609 | 1.3:+47910830 | MS.gene073852:CDS |
| GGGTAGCCGCGAGAAACACT+TGG | 0.556191 | 1.3:+47910851 | MS.gene073852:CDS |
| TGGCCAGAATCTTGTGGCAA+AGG | 0.557338 | 1.3:+47911074 | MS.gene073852:CDS |
| TGCTCATAGCTTCTCCGACA+TGG | 0.557738 | 1.3:-47911196 | None:intergenic |
| CGACAACATTCGCAGGAGAG+TGG | 0.559396 | 1.3:-47909785 | None:intergenic |
| AGGTGTAAAGAAAAGTCAGA+AGG | 0.565051 | 1.3:+47910998 | MS.gene073852:CDS |
| CTAAGAAACAACATAAATCC+CGG | 0.580812 | 1.3:+47910955 | MS.gene073852:CDS |
| ATTGGGGAGGGACACATATG+TGG | 0.592835 | 1.3:+47909924 | MS.gene073852:CDS |
| ATAGCTTCTCCGACATGGCA+AGG | 0.593291 | 1.3:-47911191 | None:intergenic |
| AGTAACTGTAATATTGGGGA+GGG | 0.594128 | 1.3:+47909912 | MS.gene073852:CDS |
| GGCCCCTGATGTGTATGATC+CGG | 0.600130 | 1.3:+47910902 | MS.gene073852:CDS |
| ATCAAGAAGAGTGAAAAGAA+AGG | 0.600790 | 1.3:+47910978 | MS.gene073852:CDS |
| TCGCACCCGACAACATTCGC+AGG | 0.602135 | 1.3:-47909792 | None:intergenic |
| TGTGACGACAATGTTGGCAC+CGG | 0.602355 | 1.3:-47910921 | None:intergenic |
| TAGTAGTAACTGTAATATTG+GGG | 0.605374 | 1.3:+47909908 | MS.gene073852:CDS |
| TGATATAGGAGACAAAATCA+AGG | 0.608502 | 1.3:-47911223 | None:intergenic |
| TTCAAGCTCTTCTGATGACG+AGG | 0.614405 | 1.3:+47910031 | MS.gene073852:CDS |
| GGTGTAAAGAAAAGTCAGAA+GGG | 0.615586 | 1.3:+47910999 | MS.gene073852:CDS |
| GGGGAGGGACACATATGTGG+TGG | 0.617375 | 1.3:+47909927 | MS.gene073852:CDS |
| ACGGTATGTGACGACAATGT+TGG | 0.618744 | 1.3:-47910927 | None:intergenic |
| GGGAGGGACACATATGTGGT+GGG | 0.620596 | 1.3:+47909928 | MS.gene073852:CDS |
| AAACTTGTATCTGCCATGAA+GGG | 0.622758 | 1.3:+47910831 | MS.gene073852:CDS |
| GCACCGGATCATACACATCA+GGG | 0.623292 | 1.3:-47910905 | None:intergenic |
| ACCGAAAGTCCTTGCCATGT+CGG | 0.626598 | 1.3:+47911182 | MS.gene073852:CDS |
| CACCGTATCAGGATAAGGAA+AGG | 0.628831 | 1.3:-47910003 | None:intergenic |
| TATAGATGGCCAGAATCTTG+TGG | 0.629442 | 1.3:+47911068 | MS.gene073852:CDS |
| GGTAGCCGCGAGAAACACTT+GGG | 0.637014 | 1.3:+47910852 | MS.gene073852:CDS |
| TAGTAACTGTAATATTGGGG+AGG | 0.638150 | 1.3:+47909911 | MS.gene073852:CDS |
| ACATGTATCTGATGATGATG+AGG | 0.654147 | 1.3:+47909881 | MS.gene073852:CDS |
| AAGCTCTTCTGATGACGAGG+AGG | 0.662047 | 1.3:+47910034 | MS.gene073852:CDS |
| AAGAAACCACACTAAAAGTG+AGG | 0.668513 | 1.3:+47909961 | MS.gene073852:CDS |
| GCGATCCCAAGTGTTTCTCG+CGG | 0.669443 | 1.3:-47910857 | None:intergenic |
| CACCGGATCATACACATCAG+GGG | 0.699399 | 1.3:-47910904 | None:intergenic |
| GTATCTGATGATGATGAGGA+TGG | 0.713196 | 1.3:+47909885 | MS.gene073852:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACATACACTTTATTTTAAA+TGG | + | chr1.3:47910601-47910620 | MS.gene073852:intron | 15.0% |
| !!! | ACATACACTTTATTTTAAAT+GGG | + | chr1.3:47910602-47910621 | MS.gene073852:intron | 15.0% |
| !! | AAATGAAATTGTCTGTTAAA+TGG | + | chr1.3:47910880-47910899 | MS.gene073852:CDS | 20.0% |
| !! | AATGAAATTGTCTGTTAAAT+GGG | + | chr1.3:47910881-47910900 | MS.gene073852:CDS | 20.0% |
| !! | TAAGAAATGTAGTTTATGTT+TGG | + | chr1.3:47910169-47910188 | MS.gene073852:intron | 20.0% |
| !!! | ACTTTATTTTAAATGGGAAA+GGG | + | chr1.3:47910608-47910627 | MS.gene073852:intron | 20.0% |
| !!! | AGTAAACTTGAAATTACTTT+TGG | + | chr1.3:47909822-47909841 | MS.gene073852:CDS | 20.0% |
| ! | AAATGTAGTTTATGTTTGGA+CGG | + | chr1.3:47910173-47910192 | MS.gene073852:intron | 25.0% |
| ! | AAGTGTATGTTTGTATCATA+TGG | - | chr1.3:47910353-47910372 | None:intergenic | 25.0% |
| ! | GTAGTAGTAACTGTAATATT+GGG | + | chr1.3:47909907-47909926 | MS.gene073852:CDS | 25.0% |
| ! | TAGTAGTAACTGTAATATTG+GGG | + | chr1.3:47909908-47909927 | MS.gene073852:CDS | 25.0% |
| !! | AGTGTATGTTTTGTATCATA+TGG | - | chr1.3:47910591-47910610 | None:intergenic | 25.0% |
| !! | TATGTTTTGTATCATATGGA+GGG | - | chr1.3:47910587-47910606 | None:intergenic | 25.0% |
| !!! | AAACTTGAAATTACTTTTGG+TGG | + | chr1.3:47909825-47909844 | MS.gene073852:CDS | 25.0% |
| !!! | AACTTGAAATTACTTTTGGT+GGG | + | chr1.3:47909826-47909845 | MS.gene073852:CDS | 25.0% |
| !!! | ACATACACTTTATTTTGAAG+TGG | + | chr1.3:47910363-47910382 | MS.gene073852:intron | 25.0% |
| !!! | CACTTTATTTTAAATGGGAA+AGG | + | chr1.3:47910607-47910626 | MS.gene073852:intron | 25.0% |
| ATCAAGAAGAGTGAAAAGAA+AGG | + | chr1.3:47910978-47910997 | MS.gene073852:CDS | 30.0% | |
| CTAAGAAACAACATAAATCC+CGG | + | chr1.3:47910955-47910974 | MS.gene073852:CDS | 30.0% | |
| GGTAGTAGTAACTGTAATAT+TGG | + | chr1.3:47909906-47909925 | MS.gene073852:CDS | 30.0% | |
| GTATGTTTGTATCATATGGT+GGG | - | chr1.3:47910349-47910368 | None:intergenic | 30.0% | |
| TGAACACAATTAGAACTTAC+CGG | - | chr1.3:47910116-47910135 | None:intergenic | 30.0% | |
| TGATATAGGAGACAAAATCA+AGG | - | chr1.3:47911226-47911245 | None:intergenic | 30.0% | |
| TGTATGTTTGTATCATATGG+TGG | - | chr1.3:47910350-47910369 | None:intergenic | 30.0% | |
| ! | GTATGTTTTGTATCATATGG+AGG | - | chr1.3:47910588-47910607 | None:intergenic | 30.0% |
| ! | TTATGCTAGATGCATTGTTT+TGG | + | chr1.3:47910491-47910510 | MS.gene073852:intron | 30.0% |
| ! | TTTTCTCTGTATTATACCAC+AGG | + | chr1.3:47910800-47910819 | MS.gene073852:intron | 30.0% |
| !! | ATGTTGTTTCTTAGTTCTCA+CGG | - | chr1.3:47910949-47910968 | None:intergenic | 30.0% |
| !! | GAAAGAACTTTTGACTCATT+CGG | + | chr1.3:47910385-47910404 | MS.gene073852:intron | 30.0% |
| !!! | ATAGTTTTGTCGAGCATAAT+TGG | + | chr1.3:47910741-47910760 | MS.gene073852:intron | 30.0% |
| AAAACTTGTATCTGCCATGA+AGG | + | chr1.3:47910830-47910849 | MS.gene073852:CDS | 35.0% | |
| AAACTTGTATCTGCCATGAA+GGG | + | chr1.3:47910831-47910850 | MS.gene073852:CDS | 35.0% | |
| AACCTTTCCTTATCCTGATA+CGG | + | chr1.3:47910001-47910020 | MS.gene073852:CDS | 35.0% | |
| AAGAAACCACACTAAAAGTG+AGG | + | chr1.3:47909961-47909980 | MS.gene073852:CDS | 35.0% | |
| AGGTGTAAAGAAAAGTCAGA+AGG | + | chr1.3:47910998-47911017 | MS.gene073852:CDS | 35.0% | |
| AGTAACTGTAATATTGGGGA+GGG | + | chr1.3:47909912-47909931 | MS.gene073852:CDS | 35.0% | |
| ATGCAGCTTTCACATAATCA+CGG | + | chr1.3:47910538-47910557 | MS.gene073852:intron | 35.0% | |
| CAAAGGATTTGATGCTTCAA+TGG | + | chr1.3:47911091-47911110 | MS.gene073852:CDS | 35.0% | |
| CTCATTCAACAAATAGAAGC+TGG | + | chr1.3:47910637-47910656 | MS.gene073852:intron | 35.0% | |
| GAAATTACTGTGAACAACTG+TGG | + | chr1.3:47910252-47910271 | MS.gene073852:intron | 35.0% | |
| GGTGTAAAGAAAAGTCAGAA+GGG | + | chr1.3:47910999-47911018 | MS.gene073852:CDS | 35.0% | |
| TAGTAACTGTAATATTGGGG+AGG | + | chr1.3:47909911-47909930 | MS.gene073852:CDS | 35.0% | |
| TTAAATAATCTCGACGTTGC+TGG | + | chr1.3:47911116-47911135 | MS.gene073852:CDS | 35.0% | |
| TTGTAGCTTTCACACAATCA+CGG | + | chr1.3:47910300-47910319 | MS.gene073852:intron | 35.0% | |
| ! | ACATGTATCTGATGATGATG+AGG | + | chr1.3:47909881-47909900 | MS.gene073852:CDS | 35.0% |
| ! | CTATAGCTTTTGCAAAACCA+CGG | - | chr1.3:47910225-47910244 | None:intergenic | 35.0% |
| ! | TCTTTTCACTCTTCTTGATC+CGG | - | chr1.3:47910977-47910996 | None:intergenic | 35.0% |
| !!! | TTGTTTTGGTCGAGCATAAT+TGG | + | chr1.3:47910505-47910524 | MS.gene073852:intron | 35.0% |
| !!! | TTTTTGAGATGCTAGTTGCA+TGG | - | chr1.3:47911154-47911173 | None:intergenic | 35.0% |
| AATCCTTTGCCACAAGATTC+TGG | - | chr1.3:47911080-47911099 | None:intergenic | 40.0% | |
| ACGGTTGCCCATAATGATTT+CGG | - | chr1.3:47910206-47910225 | None:intergenic | 40.0% | |
| ACTAAAAGTGAGGAGCTTGA+AGG | + | chr1.3:47909971-47909990 | MS.gene073852:CDS | 40.0% | |
| AGAAGCAGTATCGCTATAGA+TGG | + | chr1.3:47911054-47911073 | MS.gene073852:CDS | 40.0% | |
| AGAAGGGCAGCTATTCTAAA+GGG | + | chr1.3:47911015-47911034 | MS.gene073852:CDS | 40.0% | |
| GTAGTTTATGTTTGGACGGT+GGG | + | chr1.3:47910177-47910196 | MS.gene073852:intron | 40.0% | |
| TATAGATGGCCAGAATCTTG+TGG | + | chr1.3:47911068-47911087 | MS.gene073852:CDS | 40.0% | |
| TGGGTTGCCGAAATCATTAT+GGG | + | chr1.3:47910196-47910215 | MS.gene073852:intron | 40.0% | |
| TGTAGTTTATGTTTGGACGG+TGG | + | chr1.3:47910176-47910195 | MS.gene073852:intron | 40.0% | |
| ! | ATGGCAGATACAAGTTTTGC+AGG | - | chr1.3:47910828-47910847 | None:intergenic | 40.0% |
| ! | CTTTTCACTCTTCTTGATCC+GGG | - | chr1.3:47910976-47910995 | None:intergenic | 40.0% |
| ! | GTATCTGATGATGATGAGGA+TGG | + | chr1.3:47909885-47909904 | MS.gene073852:CDS | 40.0% |
| AACTACTTTCCACCCCCATT+GGG | - | chr1.3:47910667-47910686 | None:intergenic | 45.0% | |
| ACGGTATGTGACGACAATGT+TGG | - | chr1.3:47910930-47910949 | None:intergenic | 45.0% | |
| ACGGTTGCTAGCCATGATTT+CGG | + | chr1.3:47910319-47910338 | MS.gene073852:intron | 45.0% | |
| CACCGTATCAGGATAAGGAA+AGG | - | chr1.3:47910006-47910025 | None:intergenic | 45.0% | |
| CAGAAGGGCAGCTATTCTAA+AGG | + | chr1.3:47911014-47911033 | MS.gene073852:CDS | 45.0% | |
| CTCTACACAACTTCCAGACT+CGG | + | chr1.3:47910082-47910101 | MS.gene073852:CDS | 45.0% | |
| GAAATCATTATGGGCAACCG+TGG | + | chr1.3:47910205-47910224 | MS.gene073852:intron | 45.0% | |
| TCATTCGGCAGATAGAAAGC+TGG | + | chr1.3:47910400-47910419 | MS.gene073852:intron | 45.0% | |
| TCGTCATCAGAAGAGCTTGA+AGG | - | chr1.3:47910032-47910051 | None:intergenic | 45.0% | |
| ! | GTGGGTTGCCGAAATCATTA+TGG | + | chr1.3:47910195-47910214 | MS.gene073852:intron | 45.0% |
| ! | TTCAAGCTCTTCTGATGACG+AGG | + | chr1.3:47910031-47910050 | MS.gene073852:CDS | 45.0% |
| !! | CAAGCTCCTCACTTTTAGTG+TGG | - | chr1.3:47909970-47909989 | None:intergenic | 45.0% |
| !! | CATATGTGGTGGGTTTGAAC+AGG | + | chr1.3:47909938-47909957 | MS.gene073852:CDS | 45.0% |
| ACCGAAAGTCCTTGCCATGT+CGG | + | chr1.3:47911182-47911201 | MS.gene073852:CDS | 50.0% | |
| ACTACTTTCCACCCCCATTG+GGG | - | chr1.3:47910666-47910685 | None:intergenic | 50.0% | |
| ACTCTCCTGCGAATGTTGTC+GGG | + | chr1.3:47909787-47909806 | MS.gene073852:CDS | 50.0% | |
| ATAGAAAGCTGGTCGCTCCA+AGG | + | chr1.3:47910411-47910430 | MS.gene073852:intron | 50.0% | |
| ATAGAAGCTGGTCACCCCAA+TGG | + | chr1.3:47910649-47910668 | MS.gene073852:intron | 50.0% | |
| ATAGCTTCTCCGACATGGCA+AGG | - | chr1.3:47911194-47911213 | None:intergenic | 50.0% | |
| ATTGGGGAGGGACACATATG+TGG | + | chr1.3:47909924-47909943 | MS.gene073852:CDS | 50.0% | |
| CAACTACTTTCCACCCCCAT+TGG | - | chr1.3:47910668-47910687 | None:intergenic | 50.0% | |
| CAATGGGGGTGGAAAGTAGT+TGG | + | chr1.3:47910666-47910685 | MS.gene073852:intron | 50.0% | |
| CACCGGATCATACACATCAG+GGG | - | chr1.3:47910907-47910926 | None:intergenic | 50.0% | |
| CACTCTCCTGCGAATGTTGT+CGG | + | chr1.3:47909786-47909805 | MS.gene073852:CDS | 50.0% | |
| CTTGAAGGCAACACCGTATC+AGG | - | chr1.3:47910017-47910036 | None:intergenic | 50.0% | |
| GCACCGGATCATACACATCA+GGG | - | chr1.3:47910908-47910927 | None:intergenic | 50.0% | |
| GGCAACACCGTATCAGGATA+AGG | - | chr1.3:47910011-47910030 | None:intergenic | 50.0% | |
| TAGAAAGCTGGTCGCTCCAA+GGG | + | chr1.3:47910412-47910431 | MS.gene073852:intron | 50.0% | |
| TAGAAGCTGGTCACCCCAAT+GGG | + | chr1.3:47910650-47910669 | MS.gene073852:intron | 50.0% | |
| TCCGACATGGCAAGGACTTT+CGG | - | chr1.3:47911186-47911205 | None:intergenic | 50.0% | |
| TGCTCATAGCTTCTCCGACA+TGG | - | chr1.3:47911199-47911218 | None:intergenic | 50.0% | |
| TGGCCAGAATCTTGTGGCAA+AGG | + | chr1.3:47911074-47911093 | MS.gene073852:CDS | 50.0% | |
| TGTGACGACAATGTTGGCAC+CGG | - | chr1.3:47910924-47910943 | None:intergenic | 50.0% | |
| ! | AAGCTCTTCTGATGACGAGG+AGG | + | chr1.3:47910034-47910053 | MS.gene073852:CDS | 50.0% |
| ! | ACAAGTTTTGCAGGTGCCTG+TGG | - | chr1.3:47910819-47910838 | None:intergenic | 50.0% |
| !! | TGGTGGGTTAGCCGAAATCA+TGG | - | chr1.3:47910333-47910352 | None:intergenic | 50.0% |
| AGAAAGCTGGTCGCTCCAAG+GGG | + | chr1.3:47910413-47910432 | MS.gene073852:intron | 55.0% | |
| AGAAGCTGGTCACCCCAATG+GGG | + | chr1.3:47910651-47910670 | MS.gene073852:intron | 55.0% | |
| CAACTACTTTCCACCCCCCT+TGG | - | chr1.3:47910431-47910450 | None:intergenic | 55.0% | |
| CAAGGGGGGTGGAAAGTAGT+TGG | + | chr1.3:47910429-47910448 | MS.gene073852:intron | 55.0% | |
| CGACAACATTCGCAGGAGAG+TGG | - | chr1.3:47909788-47909807 | None:intergenic | 55.0% | |
| GCGATCCCAAGTGTTTCTCG+CGG | - | chr1.3:47910860-47910879 | None:intergenic | 55.0% | |
| GGCCCCTGATGTGTATGATC+CGG | + | chr1.3:47910902-47910921 | MS.gene073852:CDS | 55.0% | |
| GGGAGGGACACATATGTGGT+GGG | + | chr1.3:47909928-47909947 | MS.gene073852:CDS | 55.0% | |
| GGTAGCCGCGAGAAACACTT+GGG | + | chr1.3:47910852-47910871 | MS.gene073852:CDS | 55.0% | |
| TGGCAAGGACTTTCGGTAGC+TGG | - | chr1.3:47911179-47911198 | None:intergenic | 55.0% | |
| TTTCTCGCGGCTACCCTTCA+TGG | - | chr1.3:47910847-47910866 | None:intergenic | 55.0% | |
| ! | GGCACCGGATCATACACATC+AGG | - | chr1.3:47910909-47910928 | None:intergenic | 55.0% |
| ! | TCCAGACTCGGTTTCTCAGC+CGG | + | chr1.3:47910094-47910113 | MS.gene073852:CDS | 55.0% |
| ! | TCTGATGACGAGGAGGCTGA+TGG | + | chr1.3:47910041-47910060 | MS.gene073852:CDS | 55.0% |
| AAAGCTGGTCGCTCCAAGGG+GGG | + | chr1.3:47910415-47910434 | MS.gene073852:intron | 60.0% | |
| ACCGGCTGAGAAACCGAGTC+TGG | - | chr1.3:47910098-47910117 | None:intergenic | 60.0% | |
| GAAAGCTGGTCGCTCCAAGG+GGG | + | chr1.3:47910414-47910433 | MS.gene073852:intron | 60.0% | |
| GAAGCTGGTCACCCCAATGG+GGG | + | chr1.3:47910652-47910671 | MS.gene073852:intron | 60.0% | |
| GGGGAGGGACACATATGTGG+TGG | + | chr1.3:47909927-47909946 | MS.gene073852:CDS | 60.0% | |
| GGGTAGCCGCGAGAAACACT+TGG | + | chr1.3:47910851-47910870 | MS.gene073852:CDS | 60.0% | |
| TCGCACCCGACAACATTCGC+AGG | - | chr1.3:47909795-47909814 | None:intergenic | 60.0% | |
| GCTGGTCACCCCAATGGGGG+TGG | + | chr1.3:47910655-47910674 | MS.gene073852:intron | 70.0% | |
| GCTGGTCGCTCCAAGGGGGG+TGG | + | chr1.3:47910418-47910437 | MS.gene073852:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 47909777 | 47911256 | 47909777 | ID=MS.gene073852 |
| chr1.3 | mRNA | 47909777 | 47911256 | 47909777 | ID=MS.gene073852.t1;Parent=MS.gene073852 |
| chr1.3 | exon | 47909777 | 47910115 | 47909777 | ID=MS.gene073852.t1.exon1;Parent=MS.gene073852.t1 |
| chr1.3 | CDS | 47909777 | 47910115 | 47909777 | ID=cds.MS.gene073852.t1;Parent=MS.gene073852.t1 |
| chr1.3 | exon | 47910822 | 47911256 | 47910822 | ID=MS.gene073852.t1.exon2;Parent=MS.gene073852.t1 |
| chr1.3 | CDS | 47910822 | 47911256 | 47910822 | ID=cds.MS.gene073852.t1;Parent=MS.gene073852.t1 |
| Gene Sequence |
| Protein sequence |
