AlfalfaGEDB | MS.gene068527

M. sativa cultivar XinJiangDaYe / MS.gene068527

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068527.t1	XP_013468326.1	96.5	257	9	0	1	257	1	257	8.50E-117	429.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068527.t1	G7ZZJ2	96.5	257	9	0	1	257	1	257	6.1e-117	429.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene068527	-0.814061	1.87E-51	-1.69E-46
MS.gene049217	MS.gene068527	-0.801085	1.06E-48	-1.69E-46
MS.gene049232	MS.gene068527	-0.828747	7.57E-55	-1.69E-46
MS.gene049285	MS.gene068527	-0.806601	7.60E-50	-1.69E-46
MS.gene049609	MS.gene068527	-0.802087	6.63E-49	-1.69E-46
MS.gene05010	MS.gene068527	-0.822748	2.01E-53	-1.69E-46
MS.gene050216	MS.gene068527	-0.810952	8.92E-51	-1.69E-46
MS.gene050323	MS.gene068527	-0.801326	9.49E-49	-1.69E-46
MS.gene050381	MS.gene068527	0.821599	3.71E-53	-1.69E-46
MS.gene050496	MS.gene068527	-0.802752	4.83E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene018558	MS.gene068527	PPI
MS.gene058978	MS.gene068527	PPI
MS.gene061900	MS.gene068527	PPI
MS.gene073852	MS.gene068527	PPI
MS.gene09850	MS.gene068527	PPI
MS.gene24068	MS.gene068527	PPI
MS.gene53776	MS.gene068527	PPI
MS.gene64517	MS.gene068527	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068527.t1	MTR_1g068825	96.498	257	9	0	1	257	1	257	0.0	507
MS.gene068527.t1	MTR_7g099950	44.314	255	125	5	1	243	85	334	4.13e-35	128

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068527.t1	AT3G53670	41.007	139	76	4	78	215	66	199	2.71e-15	72.8
MS.gene068527.t1	AT3G53670	41.007	139	76	4	78	215	66	199	2.71e-15	72.8
MS.gene068527.t1	AT2G37480	42.520	127	54	4	73	193	58	171	2.70e-14	69.7
MS.gene068527.t1	AT2G37480	41.732	127	54	4	73	193	58	170	1.94e-13	67.4

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Find 63 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTGTATCTGCCATGA+AGG	0.537609	1.1:+50246734	MS.gene068527:CDS
AAACTTGTATCTGCCATGAA+GGG	0.622758	1.1:+50246735	MS.gene068527:CDS
AAATGAAATTGTCTGTTAAA+TGG	0.168633	1.1:+50246784	MS.gene068527:CDS
AACCTTTCCTTATCCTGATA+CGG	0.431985	1.1:+50245905	MS.gene068527:CDS
AAGAAACCACACTAAAAGTG+AGG	0.668513	1.1:+50245865	MS.gene068527:CDS
AAGCTCTTCTGATGACGAGG+AGG	0.662047	1.1:+50245938	MS.gene068527:CDS
AATCCTTTGCCACAAGATTC+TGG	0.274308	1.1:-50246981	None:intergenic
AATGAAATTGTCTGTTAAAT+GGG	0.413068	1.1:+50246785	MS.gene068527:CDS
ACATGTATCTGATGATGATG+AGG	0.654147	1.1:+50245785	MS.gene068527:CDS
ACCGAAAGTCCTTGCCATGT+CGG	0.626598	1.1:+50247086	MS.gene068527:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCAAGAAGAGTGAAAAGAA+AGG	+	chr1.1:50246882-50246901	MS.gene068527:CDS	30.0%
CTAAGAAACAACATAAATCC+CGG	+	chr1.1:50246859-50246878	MS.gene068527:CDS	30.0%
GGTAGTAGTAACTGTAATAT+TGG	+	chr1.1:50245810-50245829	MS.gene068527:CDS	30.0%
GTATGTTTGTATCATATGGT+GGG	-	chr1.1:50246253-50246272	None:intergenic	30.0%
TGAACACAATTAGAACTTAC+CGG	-	chr1.1:50246020-50246039	None:intergenic	30.0%
TGATATAGGAGACAAAATCA+AGG	-	chr1.1:50247130-50247149	None:intergenic	30.0%
TGTATGTTTGTATCATATGG+TGG	-	chr1.1:50246254-50246273	None:intergenic	30.0%
AAAACTTGTATCTGCCATGA+AGG	+	chr1.1:50246734-50246753	MS.gene068527:CDS	35.0%
AAACTTGTATCTGCCATGAA+GGG	+	chr1.1:50246735-50246754	MS.gene068527:CDS	35.0%
AACCTTTCCTTATCCTGATA+CGG	+	chr1.1:50245905-50245924	MS.gene068527:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	50245681	50247160	50245681	ID=MS.gene068527
chr1.1	mRNA	50245681	50247160	50245681	ID=MS.gene068527.t1;Parent=MS.gene068527
chr1.1	exon	50245681	50246019	50245681	ID=MS.gene068527.t1.exon1;Parent=MS.gene068527.t1
chr1.1	CDS	50245681	50246019	50245681	ID=cds.MS.gene068527.t1;Parent=MS.gene068527.t1
chr1.1	exon	50246726	50247160	50246726	ID=MS.gene068527.t1.exon2;Parent=MS.gene068527.t1
chr1.1	CDS	50246726	50247160	50246726	ID=cds.MS.gene068527.t1;Parent=MS.gene068527.t1

Gene Sequence

>MS.gene068527

ATGGACATCCACTCTCCTGCGAATGTTGTCGGGTGCGATATCATAAGTAAACTTGAAATTACTTTTGGTGGGTCATTACATATACAAGATGATCAAAAGTTAGAACATGTATCTGATGATGATGAGGATGGTAGTAGTAACTGTAATATTGGGGAGGGACACATATGTGGTGGGTTTGAACAGGAAGAAACCACACTAAAAGTGAGGAGCTTGAAGGAGTGTTCAACCTTTCCTTATCCTGATACGGTGTTGCCTTCAAGCTCTTCTGATGACGAGGAGGCTGATGGAGCATTGACAGAGTCACTCTCTACACAACTTCCAGACTCGGTTTCTCAGCCGGTAAGTTCTAATTGTGTTCACAAATAAATTCTAGCAAGTTTAAGTATGCAAGTTAAGAAATGTAGTTTATGTTTGGACGGTGGGTTGCCGAAATCATTATGGGCAACCGTGGTTTTGCAAAAGCTATAGAGTTGCTGAAATTACTGTGAACAACTGTGGTGATGCAAAAGCTACACTTTGTAGTTTGTAGCTTTCACACAATCACGGTTGCTAGCCATGATTTCGGCTAACCCACCATATGATACAAACATACACTTTATTTTGAAGTGGAAAGAACTTTTGACTCATTCGGCAGATAGAAAGCTGGTCGCTCCAAGGGGGGTGGAAAGTAGTTGGTATGTTACATTAGTATCTAATTAAACTAGCATTTAACTGTTATGCTAGATGCATTGTTTTGGTCGAGCATAATTGGCAGCTACACTATGCAGCTTTCACATAATCACGGTTGCTTGACGTGATTTCAGCAAACCCTCCATATGATACAAAACATACACTTTATTTTAAATGGGAAAGGGTTTTTACTCATTCAACAAATAGAAGCTGGTCACCCCAATGGGGGTGGAAAGTAGTTGGCTTGTTACATTAGTATTTAACTCAACATGCATTTAACTGATGTGCTAGATGCATAGTTTTGTCGAGCATAATTGGCAGCTAATCTTTTTCGCATTTGCTTATTGTTTTTTGTTTTCTCTGTATTATACCACAGGCACCTGCAAAACTTGTATCTGCCATGAAGGGTAGCCGCGAGAAACACTTGGGATCGCAAATGAAATTGTCTGTTAAATGGGCCCCTGATGTGTATGATCCGGTGCCAACATTGTCGTCACATACCGTGAGAACTAAGAAACAACATAAATCCCGGATCAAGAAGAGTGAAAAGAAAGGTGTAAAGAAAAGTCAGAAGGGCAGCTATTCTAAAGGGTGTAGCAGCAAAGATAAGAAGCAGTATCGCTATAGATGGCCAGAATCTTGTGGCAAAGGATTTGATGCTTCAATGGAATTAAATAATCTCGACGTTGCTGGCTATGATTCATACCATGCAACTAGCATCTCAAAAATACCAGCTACCGAAAGTCCTTGCCATGTCGGAGAAGCTATGAGCAACTTCCTTGATTTTGTCTCCTATATCAAGACTGCATAA

Protein sequence

>MS.gene068527.t1

MDIHSPANVVGCDIISKLEITFGGSLHIQDDQKLEHVSDDDEDGSSNCNIGEGHICGGFEQEETTLKVRSLKECSTFPYPDTVLPSSSSDDEEADGALTESLSTQLPDSVSQPAPAKLVSAMKGSREKHLGSQMKLSVKWAPDVYDPVPTLSSHTVRTKKQHKSRIKKSEKKGVKKSQKGSYSKGCSSKDKKQYRYRWPESCGKGFDASMELNNLDVAGYDSYHATSISKIPATESPCHVGEAMSNFLDFVSYIKTA