Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068527.t1 | XP_013468326.1 | 96.5 | 257 | 9 | 0 | 1 | 257 | 1 | 257 | 8.50E-117 | 429.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068527.t1 | G7ZZJ2 | 96.5 | 257 | 9 | 0 | 1 | 257 | 1 | 257 | 6.1e-117 | 429.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene068527 | -0.814061 | 1.87E-51 | -1.69E-46 |
| MS.gene049217 | MS.gene068527 | -0.801085 | 1.06E-48 | -1.69E-46 |
| MS.gene049232 | MS.gene068527 | -0.828747 | 7.57E-55 | -1.69E-46 |
| MS.gene049285 | MS.gene068527 | -0.806601 | 7.60E-50 | -1.69E-46 |
| MS.gene049609 | MS.gene068527 | -0.802087 | 6.63E-49 | -1.69E-46 |
| MS.gene05010 | MS.gene068527 | -0.822748 | 2.01E-53 | -1.69E-46 |
| MS.gene050216 | MS.gene068527 | -0.810952 | 8.92E-51 | -1.69E-46 |
| MS.gene050323 | MS.gene068527 | -0.801326 | 9.49E-49 | -1.69E-46 |
| MS.gene050381 | MS.gene068527 | 0.821599 | 3.71E-53 | -1.69E-46 |
| MS.gene050496 | MS.gene068527 | -0.802752 | 4.83E-49 | -1.69E-46 |
| MS.gene050504 | MS.gene068527 | -0.825241 | 5.22E-54 | -1.69E-46 |
| MS.gene050612 | MS.gene068527 | -0.821554 | 3.80E-53 | -1.69E-46 |
| MS.gene050675 | MS.gene068527 | -0.802332 | 5.90E-49 | -1.69E-46 |
| MS.gene050772 | MS.gene068527 | -0.810036 | 1.41E-50 | -1.69E-46 |
| MS.gene050868 | MS.gene068527 | -0.82999 | 3.78E-55 | -1.69E-46 |
| MS.gene050871 | MS.gene068527 | -0.829929 | 3.91E-55 | -1.69E-46 |
| MS.gene050986 | MS.gene068527 | -0.828638 | 8.04E-55 | -1.69E-46 |
| MS.gene051127 | MS.gene068527 | 0.806966 | 6.36E-50 | -1.69E-46 |
| MS.gene051268 | MS.gene068527 | -0.814128 | 1.80E-51 | -1.69E-46 |
| MS.gene051509 | MS.gene068527 | -0.825055 | 5.77E-54 | -1.69E-46 |
| MS.gene051874 | MS.gene068527 | -0.807736 | 4.37E-50 | -1.69E-46 |
| MS.gene052164 | MS.gene068527 | -0.828847 | 7.16E-55 | -1.69E-46 |
| MS.gene052966 | MS.gene068527 | -0.819205 | 1.31E-52 | -1.69E-46 |
| MS.gene053420 | MS.gene068527 | 0.826006 | 3.44E-54 | -1.69E-46 |
| MS.gene053574 | MS.gene068527 | -0.809185 | 2.14E-50 | -1.69E-46 |
| MS.gene053824 | MS.gene068527 | -0.816395 | 5.65E-52 | -1.69E-46 |
| MS.gene054595 | MS.gene068527 | -0.80021 | 1.60E-48 | -1.69E-46 |
| MS.gene054616 | MS.gene068527 | 0.805388 | 1.37E-49 | -1.69E-46 |
| MS.gene054954 | MS.gene068527 | -0.815936 | 7.16E-52 | -1.69E-46 |
| MS.gene055224 | MS.gene068527 | -0.803238 | 3.84E-49 | -1.69E-46 |
| MS.gene055362 | MS.gene068527 | -0.811415 | 7.08E-51 | -1.69E-46 |
| MS.gene055577 | MS.gene068527 | -0.82216 | 2.75E-53 | -1.69E-46 |
| MS.gene055722 | MS.gene068527 | -0.802614 | 5.16E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene068527 | -0.824775 | 6.72E-54 | -1.69E-46 |
| MS.gene056504 | MS.gene068527 | -0.83231 | 1.02E-55 | -1.69E-46 |
| MS.gene057086 | MS.gene068527 | -0.83697 | 6.85E-57 | -1.69E-46 |
| MS.gene057473 | MS.gene068527 | 0.800154 | 1.65E-48 | -1.69E-46 |
| MS.gene058773 | MS.gene068527 | -0.807083 | 6.01E-50 | -1.69E-46 |
| MS.gene058978 | MS.gene068527 | 0.991429 | 1.33E-187 | -1.69E-46 |
| MS.gene059022 | MS.gene068527 | -0.835041 | 2.11E-56 | -1.69E-46 |
| MS.gene059023 | MS.gene068527 | -0.82196 | 3.06E-53 | -1.69E-46 |
| MS.gene059367 | MS.gene068527 | -0.823787 | 1.15E-53 | -1.69E-46 |
| MS.gene059680 | MS.gene068527 | -0.810617 | 1.05E-50 | -1.69E-46 |
| MS.gene059865 | MS.gene068527 | -0.840592 | 7.93E-58 | -1.69E-46 |
| MS.gene060703 | MS.gene068527 | -0.820842 | 5.54E-53 | -1.69E-46 |
| MS.gene060762 | MS.gene068527 | -0.81988 | 9.21E-53 | -1.69E-46 |
| MS.gene060778 | MS.gene068527 | -0.816539 | 5.25E-52 | -1.69E-46 |
| MS.gene06077 | MS.gene068527 | -0.823585 | 1.28E-53 | -1.69E-46 |
| MS.gene060982 | MS.gene068527 | -0.82872 | 7.68E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene64517 | MS.gene068527 | PPI |
| MS.gene53776 | MS.gene068527 | PPI |
| MS.gene018558 | MS.gene068527 | PPI |
| MS.gene24068 | MS.gene068527 | PPI |
| MS.gene061900 | MS.gene068527 | PPI |
| MS.gene09850 | MS.gene068527 | PPI |
| MS.gene058978 | MS.gene068527 | PPI |
| MS.gene073852 | MS.gene068527 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068527.t1 | MTR_1g068825 | 96.498 | 257 | 9 | 0 | 1 | 257 | 1 | 257 | 0.0 | 507 |
| MS.gene068527.t1 | MTR_7g099950 | 44.314 | 255 | 125 | 5 | 1 | 243 | 85 | 334 | 4.13e-35 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068527.t1 | AT3G53670 | 41.007 | 139 | 76 | 4 | 78 | 215 | 66 | 199 | 2.71e-15 | 72.8 |
| MS.gene068527.t1 | AT3G53670 | 41.007 | 139 | 76 | 4 | 78 | 215 | 66 | 199 | 2.71e-15 | 72.8 |
| MS.gene068527.t1 | AT2G37480 | 42.520 | 127 | 54 | 4 | 73 | 193 | 58 | 171 | 2.70e-14 | 69.7 |
| MS.gene068527.t1 | AT2G37480 | 41.732 | 127 | 54 | 4 | 73 | 193 | 58 | 170 | 1.94e-13 | 67.4 |
Find 63 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGAAATTGTCTGTTAAA+TGG | 0.168633 | 1.1:+50246784 | MS.gene068527:CDS |
| AATCCTTTGCCACAAGATTC+TGG | 0.274308 | 1.1:-50246981 | None:intergenic |
| GGTAGTAGTAACTGTAATAT+TGG | 0.282358 | 1.1:+50245810 | MS.gene068527:CDS |
| AGTAAACTTGAAATTACTTT+TGG | 0.301816 | 1.1:+50245726 | MS.gene068527:CDS |
| CTTGAAGGCAACACCGTATC+AGG | 0.316264 | 1.1:-50245918 | None:intergenic |
| GTAGTAGTAACTGTAATATT+GGG | 0.335267 | 1.1:+50245811 | MS.gene068527:CDS |
| TTTCTCGCGGCTACCCTTCA+TGG | 0.337552 | 1.1:-50246748 | None:intergenic |
| TCCGACATGGCAAGGACTTT+CGG | 0.354930 | 1.1:-50247087 | None:intergenic |
| CACTCTCCTGCGAATGTTGT+CGG | 0.355819 | 1.1:+50245690 | MS.gene068527:CDS |
| TTAAATAATCTCGACGTTGC+TGG | 0.364240 | 1.1:+50247020 | MS.gene068527:CDS |
| AATGAAATTGTCTGTTAAAT+GGG | 0.413068 | 1.1:+50246785 | MS.gene068527:CDS |
| CAAAGGATTTGATGCTTCAA+TGG | 0.415687 | 1.1:+50246995 | MS.gene068527:CDS |
| AACCTTTCCTTATCCTGATA+CGG | 0.431985 | 1.1:+50245905 | MS.gene068527:CDS |
| TCGTCATCAGAAGAGCTTGA+AGG | 0.452918 | 1.1:-50245933 | None:intergenic |
| CATATGTGGTGGGTTTGAAC+AGG | 0.469286 | 1.1:+50245842 | MS.gene068527:CDS |
| TCCAGACTCGGTTTCTCAGC+CGG | 0.470198 | 1.1:+50245998 | MS.gene068527:CDS |
| ACCGGCTGAGAAACCGAGTC+TGG | 0.472530 | 1.1:-50245999 | None:intergenic |
| ACTCTCCTGCGAATGTTGTC+GGG | 0.473024 | 1.1:+50245691 | MS.gene068527:CDS |
| GACTTATGCAGTCTTGATAT+AGG | 0.475805 | 1.1:-50247141 | None:intergenic |
| TGGCAAGGACTTTCGGTAGC+TGG | 0.476961 | 1.1:-50247080 | None:intergenic |
| AGAAGCAGTATCGCTATAGA+TGG | 0.477970 | 1.1:+50246958 | MS.gene068527:CDS |
| TCTGATGACGAGGAGGCTGA+TGG | 0.485008 | 1.1:+50245945 | MS.gene068527:CDS |
| CTCTACACAACTTCCAGACT+CGG | 0.490684 | 1.1:+50245986 | MS.gene068527:CDS |
| GGCAACACCGTATCAGGATA+AGG | 0.496540 | 1.1:-50245912 | None:intergenic |
| GGCACCGGATCATACACATC+AGG | 0.503927 | 1.1:-50246810 | None:intergenic |
| CAGAAGGGCAGCTATTCTAA+AGG | 0.505063 | 1.1:+50246918 | MS.gene068527:CDS |
| ATGTTGTTTCTTAGTTCTCA+CGG | 0.517557 | 1.1:-50246850 | None:intergenic |
| ACTAAAAGTGAGGAGCTTGA+AGG | 0.525677 | 1.1:+50245875 | MS.gene068527:CDS |
| AGAAGGGCAGCTATTCTAAA+GGG | 0.525902 | 1.1:+50246919 | MS.gene068527:CDS |
| AAAACTTGTATCTGCCATGA+AGG | 0.537609 | 1.1:+50246734 | MS.gene068527:CDS |
| GGGTAGCCGCGAGAAACACT+TGG | 0.556191 | 1.1:+50246755 | MS.gene068527:CDS |
| TGGCCAGAATCTTGTGGCAA+AGG | 0.557338 | 1.1:+50246978 | MS.gene068527:CDS |
| TGCTCATAGCTTCTCCGACA+TGG | 0.557738 | 1.1:-50247100 | None:intergenic |
| CGACAACATTCGCAGGAGAG+TGG | 0.559396 | 1.1:-50245689 | None:intergenic |
| AGGTGTAAAGAAAAGTCAGA+AGG | 0.565051 | 1.1:+50246902 | MS.gene068527:CDS |
| CTAAGAAACAACATAAATCC+CGG | 0.580812 | 1.1:+50246859 | MS.gene068527:CDS |
| ATTGGGGAGGGACACATATG+TGG | 0.592835 | 1.1:+50245828 | MS.gene068527:CDS |
| ATAGCTTCTCCGACATGGCA+AGG | 0.593291 | 1.1:-50247095 | None:intergenic |
| AGTAACTGTAATATTGGGGA+GGG | 0.594128 | 1.1:+50245816 | MS.gene068527:CDS |
| GGCCCCTGATGTGTATGATC+CGG | 0.600130 | 1.1:+50246806 | MS.gene068527:CDS |
| ATCAAGAAGAGTGAAAAGAA+AGG | 0.600790 | 1.1:+50246882 | MS.gene068527:CDS |
| TCGCACCCGACAACATTCGC+AGG | 0.602135 | 1.1:-50245696 | None:intergenic |
| TGTGACGACAATGTTGGCAC+CGG | 0.602355 | 1.1:-50246825 | None:intergenic |
| TAGTAGTAACTGTAATATTG+GGG | 0.605374 | 1.1:+50245812 | MS.gene068527:CDS |
| TGATATAGGAGACAAAATCA+AGG | 0.608502 | 1.1:-50247127 | None:intergenic |
| TTCAAGCTCTTCTGATGACG+AGG | 0.614405 | 1.1:+50245935 | MS.gene068527:CDS |
| GGTGTAAAGAAAAGTCAGAA+GGG | 0.615586 | 1.1:+50246903 | MS.gene068527:CDS |
| GGGGAGGGACACATATGTGG+TGG | 0.617375 | 1.1:+50245831 | MS.gene068527:CDS |
| ACGGTATGTGACGACAATGT+TGG | 0.618744 | 1.1:-50246831 | None:intergenic |
| GGGAGGGACACATATGTGGT+GGG | 0.620596 | 1.1:+50245832 | MS.gene068527:CDS |
| AAACTTGTATCTGCCATGAA+GGG | 0.622758 | 1.1:+50246735 | MS.gene068527:CDS |
| GCACCGGATCATACACATCA+GGG | 0.623292 | 1.1:-50246809 | None:intergenic |
| ACCGAAAGTCCTTGCCATGT+CGG | 0.626598 | 1.1:+50247086 | MS.gene068527:CDS |
| CACCGTATCAGGATAAGGAA+AGG | 0.628831 | 1.1:-50245907 | None:intergenic |
| TATAGATGGCCAGAATCTTG+TGG | 0.629442 | 1.1:+50246972 | MS.gene068527:CDS |
| GGTAGCCGCGAGAAACACTT+GGG | 0.637014 | 1.1:+50246756 | MS.gene068527:CDS |
| TAGTAACTGTAATATTGGGG+AGG | 0.638150 | 1.1:+50245815 | MS.gene068527:CDS |
| ACATGTATCTGATGATGATG+AGG | 0.654147 | 1.1:+50245785 | MS.gene068527:CDS |
| AAGCTCTTCTGATGACGAGG+AGG | 0.662047 | 1.1:+50245938 | MS.gene068527:CDS |
| AAGAAACCACACTAAAAGTG+AGG | 0.668513 | 1.1:+50245865 | MS.gene068527:CDS |
| GCGATCCCAAGTGTTTCTCG+CGG | 0.669443 | 1.1:-50246761 | None:intergenic |
| CACCGGATCATACACATCAG+GGG | 0.699399 | 1.1:-50246808 | None:intergenic |
| GTATCTGATGATGATGAGGA+TGG | 0.713196 | 1.1:+50245789 | MS.gene068527:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACATACACTTTATTTTAAA+TGG | + | chr1.1:50246505-50246524 | MS.gene068527:intron | 15.0% |
| !!! | ACATACACTTTATTTTAAAT+GGG | + | chr1.1:50246506-50246525 | MS.gene068527:intron | 15.0% |
| !! | AAATGAAATTGTCTGTTAAA+TGG | + | chr1.1:50246784-50246803 | MS.gene068527:CDS | 20.0% |
| !! | AATGAAATTGTCTGTTAAAT+GGG | + | chr1.1:50246785-50246804 | MS.gene068527:CDS | 20.0% |
| !! | TAAGAAATGTAGTTTATGTT+TGG | + | chr1.1:50246073-50246092 | MS.gene068527:intron | 20.0% |
| !!! | ACTTTATTTTAAATGGGAAA+GGG | + | chr1.1:50246512-50246531 | MS.gene068527:intron | 20.0% |
| !!! | AGTAAACTTGAAATTACTTT+TGG | + | chr1.1:50245726-50245745 | MS.gene068527:CDS | 20.0% |
| ! | AAATGTAGTTTATGTTTGGA+CGG | + | chr1.1:50246077-50246096 | MS.gene068527:intron | 25.0% |
| ! | AAGTGTATGTTTGTATCATA+TGG | - | chr1.1:50246257-50246276 | None:intergenic | 25.0% |
| ! | GTAGTAGTAACTGTAATATT+GGG | + | chr1.1:50245811-50245830 | MS.gene068527:CDS | 25.0% |
| ! | TAGTAGTAACTGTAATATTG+GGG | + | chr1.1:50245812-50245831 | MS.gene068527:CDS | 25.0% |
| !! | AGTGTATGTTTTGTATCATA+TGG | - | chr1.1:50246495-50246514 | None:intergenic | 25.0% |
| !! | TATGTTTTGTATCATATGGA+GGG | - | chr1.1:50246491-50246510 | None:intergenic | 25.0% |
| !!! | AAACTTGAAATTACTTTTGG+TGG | + | chr1.1:50245729-50245748 | MS.gene068527:CDS | 25.0% |
| !!! | AACTTGAAATTACTTTTGGT+GGG | + | chr1.1:50245730-50245749 | MS.gene068527:CDS | 25.0% |
| !!! | ACATACACTTTATTTTGAAG+TGG | + | chr1.1:50246267-50246286 | MS.gene068527:intron | 25.0% |
| !!! | CACTTTATTTTAAATGGGAA+AGG | + | chr1.1:50246511-50246530 | MS.gene068527:intron | 25.0% |
| ATCAAGAAGAGTGAAAAGAA+AGG | + | chr1.1:50246882-50246901 | MS.gene068527:CDS | 30.0% | |
| CTAAGAAACAACATAAATCC+CGG | + | chr1.1:50246859-50246878 | MS.gene068527:CDS | 30.0% | |
| GGTAGTAGTAACTGTAATAT+TGG | + | chr1.1:50245810-50245829 | MS.gene068527:CDS | 30.0% | |
| GTATGTTTGTATCATATGGT+GGG | - | chr1.1:50246253-50246272 | None:intergenic | 30.0% | |
| TGAACACAATTAGAACTTAC+CGG | - | chr1.1:50246020-50246039 | None:intergenic | 30.0% | |
| TGATATAGGAGACAAAATCA+AGG | - | chr1.1:50247130-50247149 | None:intergenic | 30.0% | |
| TGTATGTTTGTATCATATGG+TGG | - | chr1.1:50246254-50246273 | None:intergenic | 30.0% | |
| ! | GTATGTTTTGTATCATATGG+AGG | - | chr1.1:50246492-50246511 | None:intergenic | 30.0% |
| ! | TTATGCTAGATGCATTGTTT+TGG | + | chr1.1:50246395-50246414 | MS.gene068527:intron | 30.0% |
| ! | TTTTCTCTGTATTATACCAC+AGG | + | chr1.1:50246704-50246723 | MS.gene068527:intron | 30.0% |
| !! | ATGTTGTTTCTTAGTTCTCA+CGG | - | chr1.1:50246853-50246872 | None:intergenic | 30.0% |
| !! | GAAAGAACTTTTGACTCATT+CGG | + | chr1.1:50246289-50246308 | MS.gene068527:intron | 30.0% |
| !!! | ATAGTTTTGTCGAGCATAAT+TGG | + | chr1.1:50246645-50246664 | MS.gene068527:intron | 30.0% |
| AAAACTTGTATCTGCCATGA+AGG | + | chr1.1:50246734-50246753 | MS.gene068527:CDS | 35.0% | |
| AAACTTGTATCTGCCATGAA+GGG | + | chr1.1:50246735-50246754 | MS.gene068527:CDS | 35.0% | |
| AACCTTTCCTTATCCTGATA+CGG | + | chr1.1:50245905-50245924 | MS.gene068527:CDS | 35.0% | |
| AAGAAACCACACTAAAAGTG+AGG | + | chr1.1:50245865-50245884 | MS.gene068527:CDS | 35.0% | |
| AGGTGTAAAGAAAAGTCAGA+AGG | + | chr1.1:50246902-50246921 | MS.gene068527:CDS | 35.0% | |
| AGTAACTGTAATATTGGGGA+GGG | + | chr1.1:50245816-50245835 | MS.gene068527:CDS | 35.0% | |
| ATGCAGCTTTCACATAATCA+CGG | + | chr1.1:50246442-50246461 | MS.gene068527:intron | 35.0% | |
| CAAAGGATTTGATGCTTCAA+TGG | + | chr1.1:50246995-50247014 | MS.gene068527:CDS | 35.0% | |
| CTCATTCAACAAATAGAAGC+TGG | + | chr1.1:50246541-50246560 | MS.gene068527:intron | 35.0% | |
| GAAATTACTGTGAACAACTG+TGG | + | chr1.1:50246156-50246175 | MS.gene068527:intron | 35.0% | |
| GGTGTAAAGAAAAGTCAGAA+GGG | + | chr1.1:50246903-50246922 | MS.gene068527:CDS | 35.0% | |
| TAGTAACTGTAATATTGGGG+AGG | + | chr1.1:50245815-50245834 | MS.gene068527:CDS | 35.0% | |
| TTAAATAATCTCGACGTTGC+TGG | + | chr1.1:50247020-50247039 | MS.gene068527:CDS | 35.0% | |
| TTGTAGCTTTCACACAATCA+CGG | + | chr1.1:50246204-50246223 | MS.gene068527:intron | 35.0% | |
| ! | ACATGTATCTGATGATGATG+AGG | + | chr1.1:50245785-50245804 | MS.gene068527:CDS | 35.0% |
| ! | CTATAGCTTTTGCAAAACCA+CGG | - | chr1.1:50246129-50246148 | None:intergenic | 35.0% |
| ! | TCTTTTCACTCTTCTTGATC+CGG | - | chr1.1:50246881-50246900 | None:intergenic | 35.0% |
| !!! | TTGTTTTGGTCGAGCATAAT+TGG | + | chr1.1:50246409-50246428 | MS.gene068527:intron | 35.0% |
| !!! | TTTTTGAGATGCTAGTTGCA+TGG | - | chr1.1:50247058-50247077 | None:intergenic | 35.0% |
| AATCCTTTGCCACAAGATTC+TGG | - | chr1.1:50246984-50247003 | None:intergenic | 40.0% | |
| ACGGTTGCCCATAATGATTT+CGG | - | chr1.1:50246110-50246129 | None:intergenic | 40.0% | |
| ACTAAAAGTGAGGAGCTTGA+AGG | + | chr1.1:50245875-50245894 | MS.gene068527:CDS | 40.0% | |
| AGAAGCAGTATCGCTATAGA+TGG | + | chr1.1:50246958-50246977 | MS.gene068527:CDS | 40.0% | |
| AGAAGGGCAGCTATTCTAAA+GGG | + | chr1.1:50246919-50246938 | MS.gene068527:CDS | 40.0% | |
| GTAGTTTATGTTTGGACGGT+GGG | + | chr1.1:50246081-50246100 | MS.gene068527:intron | 40.0% | |
| TATAGATGGCCAGAATCTTG+TGG | + | chr1.1:50246972-50246991 | MS.gene068527:CDS | 40.0% | |
| TGGGTTGCCGAAATCATTAT+GGG | + | chr1.1:50246100-50246119 | MS.gene068527:intron | 40.0% | |
| TGTAGTTTATGTTTGGACGG+TGG | + | chr1.1:50246080-50246099 | MS.gene068527:intron | 40.0% | |
| ! | ATGGCAGATACAAGTTTTGC+AGG | - | chr1.1:50246732-50246751 | None:intergenic | 40.0% |
| ! | CTTTTCACTCTTCTTGATCC+GGG | - | chr1.1:50246880-50246899 | None:intergenic | 40.0% |
| ! | GTATCTGATGATGATGAGGA+TGG | + | chr1.1:50245789-50245808 | MS.gene068527:CDS | 40.0% |
| AACTACTTTCCACCCCCATT+GGG | - | chr1.1:50246571-50246590 | None:intergenic | 45.0% | |
| ACGGTATGTGACGACAATGT+TGG | - | chr1.1:50246834-50246853 | None:intergenic | 45.0% | |
| ACGGTTGCTAGCCATGATTT+CGG | + | chr1.1:50246223-50246242 | MS.gene068527:intron | 45.0% | |
| CACCGTATCAGGATAAGGAA+AGG | - | chr1.1:50245910-50245929 | None:intergenic | 45.0% | |
| CAGAAGGGCAGCTATTCTAA+AGG | + | chr1.1:50246918-50246937 | MS.gene068527:CDS | 45.0% | |
| CTCTACACAACTTCCAGACT+CGG | + | chr1.1:50245986-50246005 | MS.gene068527:CDS | 45.0% | |
| GAAATCATTATGGGCAACCG+TGG | + | chr1.1:50246109-50246128 | MS.gene068527:intron | 45.0% | |
| TCATTCGGCAGATAGAAAGC+TGG | + | chr1.1:50246304-50246323 | MS.gene068527:intron | 45.0% | |
| TCGTCATCAGAAGAGCTTGA+AGG | - | chr1.1:50245936-50245955 | None:intergenic | 45.0% | |
| ! | GTGGGTTGCCGAAATCATTA+TGG | + | chr1.1:50246099-50246118 | MS.gene068527:intron | 45.0% |
| ! | TTCAAGCTCTTCTGATGACG+AGG | + | chr1.1:50245935-50245954 | MS.gene068527:CDS | 45.0% |
| !! | CAAGCTCCTCACTTTTAGTG+TGG | - | chr1.1:50245874-50245893 | None:intergenic | 45.0% |
| !! | CATATGTGGTGGGTTTGAAC+AGG | + | chr1.1:50245842-50245861 | MS.gene068527:CDS | 45.0% |
| ACCGAAAGTCCTTGCCATGT+CGG | + | chr1.1:50247086-50247105 | MS.gene068527:CDS | 50.0% | |
| ACTACTTTCCACCCCCATTG+GGG | - | chr1.1:50246570-50246589 | None:intergenic | 50.0% | |
| ACTCTCCTGCGAATGTTGTC+GGG | + | chr1.1:50245691-50245710 | MS.gene068527:CDS | 50.0% | |
| ATAGAAAGCTGGTCGCTCCA+AGG | + | chr1.1:50246315-50246334 | MS.gene068527:intron | 50.0% | |
| ATAGAAGCTGGTCACCCCAA+TGG | + | chr1.1:50246553-50246572 | MS.gene068527:intron | 50.0% | |
| ATAGCTTCTCCGACATGGCA+AGG | - | chr1.1:50247098-50247117 | None:intergenic | 50.0% | |
| ATTGGGGAGGGACACATATG+TGG | + | chr1.1:50245828-50245847 | MS.gene068527:CDS | 50.0% | |
| CAACTACTTTCCACCCCCAT+TGG | - | chr1.1:50246572-50246591 | None:intergenic | 50.0% | |
| CAATGGGGGTGGAAAGTAGT+TGG | + | chr1.1:50246570-50246589 | MS.gene068527:intron | 50.0% | |
| CACCGGATCATACACATCAG+GGG | - | chr1.1:50246811-50246830 | None:intergenic | 50.0% | |
| CACTCTCCTGCGAATGTTGT+CGG | + | chr1.1:50245690-50245709 | MS.gene068527:CDS | 50.0% | |
| CTTGAAGGCAACACCGTATC+AGG | - | chr1.1:50245921-50245940 | None:intergenic | 50.0% | |
| GCACCGGATCATACACATCA+GGG | - | chr1.1:50246812-50246831 | None:intergenic | 50.0% | |
| GGCAACACCGTATCAGGATA+AGG | - | chr1.1:50245915-50245934 | None:intergenic | 50.0% | |
| TAGAAAGCTGGTCGCTCCAA+GGG | + | chr1.1:50246316-50246335 | MS.gene068527:intron | 50.0% | |
| TAGAAGCTGGTCACCCCAAT+GGG | + | chr1.1:50246554-50246573 | MS.gene068527:intron | 50.0% | |
| TCCGACATGGCAAGGACTTT+CGG | - | chr1.1:50247090-50247109 | None:intergenic | 50.0% | |
| TGCTCATAGCTTCTCCGACA+TGG | - | chr1.1:50247103-50247122 | None:intergenic | 50.0% | |
| TGGCCAGAATCTTGTGGCAA+AGG | + | chr1.1:50246978-50246997 | MS.gene068527:CDS | 50.0% | |
| TGTGACGACAATGTTGGCAC+CGG | - | chr1.1:50246828-50246847 | None:intergenic | 50.0% | |
| ! | AAGCTCTTCTGATGACGAGG+AGG | + | chr1.1:50245938-50245957 | MS.gene068527:CDS | 50.0% |
| ! | ACAAGTTTTGCAGGTGCCTG+TGG | - | chr1.1:50246723-50246742 | None:intergenic | 50.0% |
| !! | TGGTGGGTTAGCCGAAATCA+TGG | - | chr1.1:50246237-50246256 | None:intergenic | 50.0% |
| AGAAAGCTGGTCGCTCCAAG+GGG | + | chr1.1:50246317-50246336 | MS.gene068527:intron | 55.0% | |
| AGAAGCTGGTCACCCCAATG+GGG | + | chr1.1:50246555-50246574 | MS.gene068527:intron | 55.0% | |
| CAACTACTTTCCACCCCCCT+TGG | - | chr1.1:50246335-50246354 | None:intergenic | 55.0% | |
| CAAGGGGGGTGGAAAGTAGT+TGG | + | chr1.1:50246333-50246352 | MS.gene068527:intron | 55.0% | |
| CGACAACATTCGCAGGAGAG+TGG | - | chr1.1:50245692-50245711 | None:intergenic | 55.0% | |
| GCGATCCCAAGTGTTTCTCG+CGG | - | chr1.1:50246764-50246783 | None:intergenic | 55.0% | |
| GGCCCCTGATGTGTATGATC+CGG | + | chr1.1:50246806-50246825 | MS.gene068527:CDS | 55.0% | |
| GGGAGGGACACATATGTGGT+GGG | + | chr1.1:50245832-50245851 | MS.gene068527:CDS | 55.0% | |
| GGTAGCCGCGAGAAACACTT+GGG | + | chr1.1:50246756-50246775 | MS.gene068527:CDS | 55.0% | |
| TGGCAAGGACTTTCGGTAGC+TGG | - | chr1.1:50247083-50247102 | None:intergenic | 55.0% | |
| TTTCTCGCGGCTACCCTTCA+TGG | - | chr1.1:50246751-50246770 | None:intergenic | 55.0% | |
| ! | GGCACCGGATCATACACATC+AGG | - | chr1.1:50246813-50246832 | None:intergenic | 55.0% |
| ! | TCCAGACTCGGTTTCTCAGC+CGG | + | chr1.1:50245998-50246017 | MS.gene068527:CDS | 55.0% |
| ! | TCTGATGACGAGGAGGCTGA+TGG | + | chr1.1:50245945-50245964 | MS.gene068527:CDS | 55.0% |
| AAAGCTGGTCGCTCCAAGGG+GGG | + | chr1.1:50246319-50246338 | MS.gene068527:intron | 60.0% | |
| ACCGGCTGAGAAACCGAGTC+TGG | - | chr1.1:50246002-50246021 | None:intergenic | 60.0% | |
| GAAAGCTGGTCGCTCCAAGG+GGG | + | chr1.1:50246318-50246337 | MS.gene068527:intron | 60.0% | |
| GAAGCTGGTCACCCCAATGG+GGG | + | chr1.1:50246556-50246575 | MS.gene068527:intron | 60.0% | |
| GGGGAGGGACACATATGTGG+TGG | + | chr1.1:50245831-50245850 | MS.gene068527:CDS | 60.0% | |
| GGGTAGCCGCGAGAAACACT+TGG | + | chr1.1:50246755-50246774 | MS.gene068527:CDS | 60.0% | |
| TCGCACCCGACAACATTCGC+AGG | - | chr1.1:50245699-50245718 | None:intergenic | 60.0% | |
| GCTGGTCACCCCAATGGGGG+TGG | + | chr1.1:50246559-50246578 | MS.gene068527:intron | 70.0% | |
| GCTGGTCGCTCCAAGGGGGG+TGG | + | chr1.1:50246322-50246341 | MS.gene068527:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 50245681 | 50247160 | 50245681 | ID=MS.gene068527 |
| chr1.1 | mRNA | 50245681 | 50247160 | 50245681 | ID=MS.gene068527.t1;Parent=MS.gene068527 |
| chr1.1 | exon | 50245681 | 50246019 | 50245681 | ID=MS.gene068527.t1.exon1;Parent=MS.gene068527.t1 |
| chr1.1 | CDS | 50245681 | 50246019 | 50245681 | ID=cds.MS.gene068527.t1;Parent=MS.gene068527.t1 |
| chr1.1 | exon | 50246726 | 50247160 | 50246726 | ID=MS.gene068527.t1.exon2;Parent=MS.gene068527.t1 |
| chr1.1 | CDS | 50246726 | 50247160 | 50246726 | ID=cds.MS.gene068527.t1;Parent=MS.gene068527.t1 |
| Gene Sequence |
| Protein sequence |
