Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53776.t1 | XP_013468326.1 | 96.5 | 257 | 9 | 0 | 1 | 257 | 1 | 257 | 8.50E-117 | 429.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53776.t1 | G7ZZJ2 | 96.5 | 257 | 9 | 0 | 1 | 257 | 1 | 257 | 6.1e-117 | 429.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene53776 | -0.828075 | 1.10E-54 | -1.69E-46 |
| MS.gene049217 | MS.gene53776 | -0.809851 | 1.54E-50 | -1.69E-46 |
| MS.gene049232 | MS.gene53776 | -0.838708 | 2.45E-57 | -1.69E-46 |
| MS.gene049285 | MS.gene53776 | -0.821207 | 4.56E-53 | -1.69E-46 |
| MS.gene049320 | MS.gene53776 | -0.809193 | 2.14E-50 | -1.69E-46 |
| MS.gene049609 | MS.gene53776 | -0.804357 | 2.25E-49 | -1.69E-46 |
| MS.gene049633 | MS.gene53776 | -0.806036 | 1.00E-49 | -1.69E-46 |
| MS.gene05010 | MS.gene53776 | -0.835831 | 1.33E-56 | -1.69E-46 |
| MS.gene050170 | MS.gene53776 | -0.807395 | 5.16E-50 | -1.69E-46 |
| MS.gene050216 | MS.gene53776 | -0.817021 | 4.09E-52 | -1.69E-46 |
| MS.gene050323 | MS.gene53776 | -0.817286 | 3.57E-52 | -1.69E-46 |
| MS.gene050333 | MS.gene53776 | -0.802289 | 6.02E-49 | -1.69E-46 |
| MS.gene050381 | MS.gene53776 | 0.825412 | 4.76E-54 | -1.69E-46 |
| MS.gene050496 | MS.gene53776 | -0.819626 | 1.05E-52 | -1.69E-46 |
| MS.gene050504 | MS.gene53776 | -0.838263 | 3.19E-57 | -1.69E-46 |
| MS.gene050612 | MS.gene53776 | -0.837087 | 6.39E-57 | -1.69E-46 |
| MS.gene050675 | MS.gene53776 | -0.818266 | 2.14E-52 | -1.69E-46 |
| MS.gene050772 | MS.gene53776 | -0.816714 | 4.80E-52 | -1.69E-46 |
| MS.gene05080 | MS.gene53776 | -0.809524 | 1.81E-50 | -1.69E-46 |
| MS.gene050868 | MS.gene53776 | -0.838502 | 2.77E-57 | -1.69E-46 |
| MS.gene050871 | MS.gene53776 | -0.83802 | 3.68E-57 | -1.69E-46 |
| MS.gene050986 | MS.gene53776 | -0.847728 | 9.62E-60 | -1.69E-46 |
| MS.gene051127 | MS.gene53776 | 0.819185 | 1.33E-52 | -1.69E-46 |
| MS.gene051268 | MS.gene53776 | -0.83688 | 7.22E-57 | -1.69E-46 |
| MS.gene051509 | MS.gene53776 | -0.832289 | 1.03E-55 | -1.69E-46 |
| MS.gene051810 | MS.gene53776 | -0.803233 | 3.84E-49 | -1.69E-46 |
| MS.gene051874 | MS.gene53776 | -0.81486 | 1.24E-51 | -1.69E-46 |
| MS.gene052164 | MS.gene53776 | -0.831875 | 1.30E-55 | -1.69E-46 |
| MS.gene052482 | MS.gene53776 | -0.800441 | 1.44E-48 | -1.69E-46 |
| MS.gene052486 | MS.gene53776 | -0.807379 | 5.20E-50 | -1.69E-46 |
| MS.gene052966 | MS.gene53776 | -0.830128 | 3.50E-55 | -1.69E-46 |
| MS.gene053420 | MS.gene53776 | 0.83643 | 9.40E-57 | -1.69E-46 |
| MS.gene053561 | MS.gene53776 | 0.810247 | 1.27E-50 | -1.69E-46 |
| MS.gene053574 | MS.gene53776 | -0.808945 | 2.41E-50 | -1.69E-46 |
| MS.gene053824 | MS.gene53776 | -0.824552 | 7.59E-54 | -1.69E-46 |
| MS.gene054595 | MS.gene53776 | -0.812257 | 4.64E-51 | -1.69E-46 |
| MS.gene054600 | MS.gene53776 | -0.809387 | 1.94E-50 | -1.69E-46 |
| MS.gene054616 | MS.gene53776 | 0.813277 | 2.78E-51 | -1.69E-46 |
| MS.gene054642 | MS.gene53776 | -0.804195 | 2.43E-49 | -1.69E-46 |
| MS.gene054954 | MS.gene53776 | -0.834102 | 3.64E-56 | -1.69E-46 |
| MS.gene055224 | MS.gene53776 | -0.804754 | 1.86E-49 | -1.69E-46 |
| MS.gene055362 | MS.gene53776 | -0.826364 | 2.83E-54 | -1.69E-46 |
| MS.gene055502 | MS.gene53776 | -0.802992 | 4.31E-49 | -1.69E-46 |
| MS.gene055577 | MS.gene53776 | -0.826893 | 2.11E-54 | -1.69E-46 |
| MS.gene055722 | MS.gene53776 | -0.812285 | 4.58E-51 | -1.69E-46 |
| MS.gene055751 | MS.gene53776 | -0.810228 | 1.28E-50 | -1.69E-46 |
| MS.gene055776 | MS.gene53776 | -0.809371 | 1.96E-50 | -1.69E-46 |
| MS.gene05589 | MS.gene53776 | -0.836236 | 1.05E-56 | -1.69E-46 |
| MS.gene055941 | MS.gene53776 | -0.801525 | 8.64E-49 | -1.69E-46 |
| MS.gene056504 | MS.gene53776 | -0.844847 | 5.86E-59 | -1.69E-46 |
| MS.gene056510 | MS.gene53776 | -0.803812 | 2.92E-49 | -1.69E-46 |
| MS.gene056657 | MS.gene53776 | -0.808888 | 2.48E-50 | -1.69E-46 |
| MS.gene057086 | MS.gene53776 | -0.835167 | 1.96E-56 | -1.69E-46 |
| MS.gene057473 | MS.gene53776 | 0.81351 | 2.47E-51 | -1.69E-46 |
| MS.gene05837 | MS.gene53776 | -0.800799 | 1.22E-48 | -1.69E-46 |
| MS.gene058419 | MS.gene53776 | -0.806146 | 9.48E-50 | -1.69E-46 |
| MS.gene058773 | MS.gene53776 | -0.821511 | 3.88E-53 | -1.69E-46 |
| MS.gene058978 | MS.gene53776 | 0.995701 | 5.63E-219 | -1.69E-46 |
| MS.gene059022 | MS.gene53776 | -0.851816 | 6.94E-61 | -1.69E-46 |
| MS.gene059023 | MS.gene53776 | -0.830733 | 2.49E-55 | -1.69E-46 |
| MS.gene05913 | MS.gene53776 | -0.808999 | 2.35E-50 | -1.69E-46 |
| MS.gene059367 | MS.gene53776 | -0.826866 | 2.14E-54 | -1.69E-46 |
| MS.gene059677 | MS.gene53776 | -0.815302 | 9.91E-52 | -1.69E-46 |
| MS.gene059680 | MS.gene53776 | -0.819031 | 1.44E-52 | -1.69E-46 |
| MS.gene059718 | MS.gene53776 | -0.806237 | 9.07E-50 | -1.69E-46 |
| MS.gene059865 | MS.gene53776 | -0.853794 | 1.89E-61 | -1.69E-46 |
| MS.gene06000 | MS.gene53776 | -0.805443 | 1.33E-49 | -1.69E-46 |
| MS.gene060703 | MS.gene53776 | -0.836111 | 1.13E-56 | -1.69E-46 |
| MS.gene060762 | MS.gene53776 | -0.83009 | 3.57E-55 | -1.69E-46 |
| MS.gene060778 | MS.gene53776 | -0.829323 | 5.49E-55 | -1.69E-46 |
| MS.gene06077 | MS.gene53776 | -0.832467 | 9.30E-56 | -1.69E-46 |
| MS.gene060982 | MS.gene53776 | -0.838922 | 2.16E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene073852 | MS.gene53776 | PPI |
| MS.gene53776 | MS.gene068527 | PPI |
| MS.gene53776 | MS.gene058978 | PPI |
| MS.gene53776 | MS.gene018558 | PPI |
| MS.gene53776 | MS.gene073852 | PPI |
| MS.gene53776 | MS.gene24068 | PPI |
| MS.gene061900 | MS.gene53776 | PPI |
| MS.gene09850 | MS.gene53776 | PPI |
| MS.gene53776 | MS.gene64517 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53776.t1 | MTR_1g068825 | 96.498 | 257 | 9 | 0 | 1 | 257 | 1 | 257 | 0.0 | 507 |
| MS.gene53776.t1 | MTR_7g099950 | 44.314 | 255 | 125 | 5 | 1 | 243 | 85 | 334 | 4.13e-35 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53776.t1 | AT3G53670 | 41.007 | 139 | 76 | 4 | 78 | 215 | 66 | 199 | 2.71e-15 | 72.8 |
| MS.gene53776.t1 | AT3G53670 | 41.007 | 139 | 76 | 4 | 78 | 215 | 66 | 199 | 2.71e-15 | 72.8 |
| MS.gene53776.t1 | AT2G37480 | 42.520 | 127 | 54 | 4 | 73 | 193 | 58 | 171 | 2.70e-14 | 69.7 |
| MS.gene53776.t1 | AT2G37480 | 41.732 | 127 | 54 | 4 | 73 | 193 | 58 | 170 | 1.94e-13 | 67.4 |
Find 63 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGAAATTGTCTGTTAAA+TGG | 0.168633 | 1.3:+47891000 | MS.gene53776:CDS |
| AATCCTTTGCCACAAGATTC+TGG | 0.274308 | 1.3:-47891197 | None:intergenic |
| GGTAGTAGTAACTGTAATAT+TGG | 0.282358 | 1.3:+47890026 | MS.gene53776:CDS |
| AGTAAACTTGAAATTACTTT+TGG | 0.301816 | 1.3:+47889942 | MS.gene53776:CDS |
| CTTGAAGGCAACACCGTATC+AGG | 0.316264 | 1.3:-47890134 | None:intergenic |
| GTAGTAGTAACTGTAATATT+GGG | 0.335267 | 1.3:+47890027 | MS.gene53776:CDS |
| TTTCTCGCGGCTACCCTTCA+TGG | 0.337552 | 1.3:-47890964 | None:intergenic |
| TCCGACATGGCAAGGACTTT+CGG | 0.354930 | 1.3:-47891303 | None:intergenic |
| CACTCTCCTGCGAATGTTGT+CGG | 0.355819 | 1.3:+47889906 | MS.gene53776:CDS |
| TTAAATAATCTCGACGTTGC+TGG | 0.364240 | 1.3:+47891236 | MS.gene53776:CDS |
| AATGAAATTGTCTGTTAAAT+GGG | 0.413068 | 1.3:+47891001 | MS.gene53776:CDS |
| CAAAGGATTTGATGCTTCAA+TGG | 0.415687 | 1.3:+47891211 | MS.gene53776:CDS |
| AACCTTTCCTTATCCTGATA+CGG | 0.431985 | 1.3:+47890121 | MS.gene53776:CDS |
| TCGTCATCAGAAGAGCTTGA+AGG | 0.452918 | 1.3:-47890149 | None:intergenic |
| CATATGTGGTGGGTTTGAAC+AGG | 0.469286 | 1.3:+47890058 | MS.gene53776:CDS |
| TCCAGACTCGGTTTCTCAGC+CGG | 0.470198 | 1.3:+47890214 | MS.gene53776:CDS |
| ACCGGCTGAGAAACCGAGTC+TGG | 0.472530 | 1.3:-47890215 | None:intergenic |
| ACTCTCCTGCGAATGTTGTC+GGG | 0.473024 | 1.3:+47889907 | MS.gene53776:CDS |
| GACTTATGCAGTCTTGATAT+AGG | 0.475805 | 1.3:-47891357 | None:intergenic |
| TGGCAAGGACTTTCGGTAGC+TGG | 0.476961 | 1.3:-47891296 | None:intergenic |
| AGAAGCAGTATCGCTATAGA+TGG | 0.477970 | 1.3:+47891174 | MS.gene53776:CDS |
| TCTGATGACGAGGAGGCTGA+TGG | 0.485008 | 1.3:+47890161 | MS.gene53776:CDS |
| CTCTACACAACTTCCAGACT+CGG | 0.490684 | 1.3:+47890202 | MS.gene53776:CDS |
| GGCAACACCGTATCAGGATA+AGG | 0.496540 | 1.3:-47890128 | None:intergenic |
| GGCACCGGATCATACACATC+AGG | 0.503927 | 1.3:-47891026 | None:intergenic |
| CAGAAGGGCAGCTATTCTAA+AGG | 0.505063 | 1.3:+47891134 | MS.gene53776:CDS |
| ATGTTGTTTCTTAGTTCTCA+CGG | 0.517557 | 1.3:-47891066 | None:intergenic |
| ACTAAAAGTGAGGAGCTTGA+AGG | 0.525677 | 1.3:+47890091 | MS.gene53776:CDS |
| AGAAGGGCAGCTATTCTAAA+GGG | 0.525902 | 1.3:+47891135 | MS.gene53776:CDS |
| AAAACTTGTATCTGCCATGA+AGG | 0.537609 | 1.3:+47890950 | MS.gene53776:CDS |
| GGGTAGCCGCGAGAAACACT+TGG | 0.556191 | 1.3:+47890971 | MS.gene53776:CDS |
| TGGCCAGAATCTTGTGGCAA+AGG | 0.557338 | 1.3:+47891194 | MS.gene53776:CDS |
| TGCTCATAGCTTCTCCGACA+TGG | 0.557738 | 1.3:-47891316 | None:intergenic |
| CGACAACATTCGCAGGAGAG+TGG | 0.559396 | 1.3:-47889905 | None:intergenic |
| AGGTGTAAAGAAAAGTCAGA+AGG | 0.565051 | 1.3:+47891118 | MS.gene53776:CDS |
| CTAAGAAACAACATAAATCC+CGG | 0.580812 | 1.3:+47891075 | MS.gene53776:CDS |
| ATTGGGGAGGGACACATATG+TGG | 0.592835 | 1.3:+47890044 | MS.gene53776:CDS |
| ATAGCTTCTCCGACATGGCA+AGG | 0.593291 | 1.3:-47891311 | None:intergenic |
| AGTAACTGTAATATTGGGGA+GGG | 0.594128 | 1.3:+47890032 | MS.gene53776:CDS |
| GGCCCCTGATGTGTATGATC+CGG | 0.600130 | 1.3:+47891022 | MS.gene53776:CDS |
| ATCAAGAAGAGTGAAAAGAA+AGG | 0.600790 | 1.3:+47891098 | MS.gene53776:CDS |
| TCGCACCCGACAACATTCGC+AGG | 0.602135 | 1.3:-47889912 | None:intergenic |
| TGTGACGACAATGTTGGCAC+CGG | 0.602355 | 1.3:-47891041 | None:intergenic |
| TAGTAGTAACTGTAATATTG+GGG | 0.605374 | 1.3:+47890028 | MS.gene53776:CDS |
| TGATATAGGAGACAAAATCA+AGG | 0.608502 | 1.3:-47891343 | None:intergenic |
| TTCAAGCTCTTCTGATGACG+AGG | 0.614405 | 1.3:+47890151 | MS.gene53776:CDS |
| GGTGTAAAGAAAAGTCAGAA+GGG | 0.615586 | 1.3:+47891119 | MS.gene53776:CDS |
| GGGGAGGGACACATATGTGG+TGG | 0.617375 | 1.3:+47890047 | MS.gene53776:CDS |
| ACGGTATGTGACGACAATGT+TGG | 0.618744 | 1.3:-47891047 | None:intergenic |
| GGGAGGGACACATATGTGGT+GGG | 0.620596 | 1.3:+47890048 | MS.gene53776:CDS |
| AAACTTGTATCTGCCATGAA+GGG | 0.622758 | 1.3:+47890951 | MS.gene53776:CDS |
| GCACCGGATCATACACATCA+GGG | 0.623292 | 1.3:-47891025 | None:intergenic |
| ACCGAAAGTCCTTGCCATGT+CGG | 0.626598 | 1.3:+47891302 | MS.gene53776:CDS |
| CACCGTATCAGGATAAGGAA+AGG | 0.628831 | 1.3:-47890123 | None:intergenic |
| TATAGATGGCCAGAATCTTG+TGG | 0.629442 | 1.3:+47891188 | MS.gene53776:CDS |
| GGTAGCCGCGAGAAACACTT+GGG | 0.637014 | 1.3:+47890972 | MS.gene53776:CDS |
| TAGTAACTGTAATATTGGGG+AGG | 0.638150 | 1.3:+47890031 | MS.gene53776:CDS |
| ACATGTATCTGATGATGATG+AGG | 0.654147 | 1.3:+47890001 | MS.gene53776:CDS |
| AAGCTCTTCTGATGACGAGG+AGG | 0.662047 | 1.3:+47890154 | MS.gene53776:CDS |
| AAGAAACCACACTAAAAGTG+AGG | 0.668513 | 1.3:+47890081 | MS.gene53776:CDS |
| GCGATCCCAAGTGTTTCTCG+CGG | 0.669443 | 1.3:-47890977 | None:intergenic |
| CACCGGATCATACACATCAG+GGG | 0.699399 | 1.3:-47891024 | None:intergenic |
| GTATCTGATGATGATGAGGA+TGG | 0.713196 | 1.3:+47890005 | MS.gene53776:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACATACACTTTATTTTAAA+TGG | + | chr1.3:47890721-47890740 | MS.gene53776:intron | 15.0% |
| !!! | ACATACACTTTATTTTAAAT+GGG | + | chr1.3:47890722-47890741 | MS.gene53776:intron | 15.0% |
| !! | AAATGAAATTGTCTGTTAAA+TGG | + | chr1.3:47891000-47891019 | MS.gene53776:CDS | 20.0% |
| !! | AATGAAATTGTCTGTTAAAT+GGG | + | chr1.3:47891001-47891020 | MS.gene53776:CDS | 20.0% |
| !! | TAAGAAATGTAGTTTATGTT+TGG | + | chr1.3:47890289-47890308 | MS.gene53776:intron | 20.0% |
| !!! | ACTTTATTTTAAATGGGAAA+GGG | + | chr1.3:47890728-47890747 | MS.gene53776:intron | 20.0% |
| !!! | AGTAAACTTGAAATTACTTT+TGG | + | chr1.3:47889942-47889961 | MS.gene53776:CDS | 20.0% |
| ! | AAATGTAGTTTATGTTTGGA+CGG | + | chr1.3:47890293-47890312 | MS.gene53776:intron | 25.0% |
| ! | AAGTGTATGTTTGTATCATA+TGG | - | chr1.3:47890473-47890492 | None:intergenic | 25.0% |
| ! | GTAGTAGTAACTGTAATATT+GGG | + | chr1.3:47890027-47890046 | MS.gene53776:CDS | 25.0% |
| ! | TAGTAGTAACTGTAATATTG+GGG | + | chr1.3:47890028-47890047 | MS.gene53776:CDS | 25.0% |
| !! | AGTGTATGTTTTGTATCATA+TGG | - | chr1.3:47890711-47890730 | None:intergenic | 25.0% |
| !! | TATGTTTTGTATCATATGGA+GGG | - | chr1.3:47890707-47890726 | None:intergenic | 25.0% |
| !!! | AAACTTGAAATTACTTTTGG+TGG | + | chr1.3:47889945-47889964 | MS.gene53776:CDS | 25.0% |
| !!! | AACTTGAAATTACTTTTGGT+GGG | + | chr1.3:47889946-47889965 | MS.gene53776:CDS | 25.0% |
| !!! | ACATACACTTTATTTTGAAG+TGG | + | chr1.3:47890483-47890502 | MS.gene53776:intron | 25.0% |
| !!! | CACTTTATTTTAAATGGGAA+AGG | + | chr1.3:47890727-47890746 | MS.gene53776:intron | 25.0% |
| ATCAAGAAGAGTGAAAAGAA+AGG | + | chr1.3:47891098-47891117 | MS.gene53776:CDS | 30.0% | |
| CTAAGAAACAACATAAATCC+CGG | + | chr1.3:47891075-47891094 | MS.gene53776:CDS | 30.0% | |
| GGTAGTAGTAACTGTAATAT+TGG | + | chr1.3:47890026-47890045 | MS.gene53776:CDS | 30.0% | |
| GTATGTTTGTATCATATGGT+GGG | - | chr1.3:47890469-47890488 | None:intergenic | 30.0% | |
| TGAACACAATTAGAACTTAC+CGG | - | chr1.3:47890236-47890255 | None:intergenic | 30.0% | |
| TGATATAGGAGACAAAATCA+AGG | - | chr1.3:47891346-47891365 | None:intergenic | 30.0% | |
| TGTATGTTTGTATCATATGG+TGG | - | chr1.3:47890470-47890489 | None:intergenic | 30.0% | |
| ! | GTATGTTTTGTATCATATGG+AGG | - | chr1.3:47890708-47890727 | None:intergenic | 30.0% |
| ! | TTATGCTAGATGCATTGTTT+TGG | + | chr1.3:47890611-47890630 | MS.gene53776:intron | 30.0% |
| ! | TTTTCTCTGTATTATACCAC+AGG | + | chr1.3:47890920-47890939 | MS.gene53776:intron | 30.0% |
| !! | ATGTTGTTTCTTAGTTCTCA+CGG | - | chr1.3:47891069-47891088 | None:intergenic | 30.0% |
| !! | GAAAGAACTTTTGACTCATT+CGG | + | chr1.3:47890505-47890524 | MS.gene53776:intron | 30.0% |
| !!! | ATAGTTTTGTCGAGCATAAT+TGG | + | chr1.3:47890861-47890880 | MS.gene53776:intron | 30.0% |
| AAAACTTGTATCTGCCATGA+AGG | + | chr1.3:47890950-47890969 | MS.gene53776:CDS | 35.0% | |
| AAACTTGTATCTGCCATGAA+GGG | + | chr1.3:47890951-47890970 | MS.gene53776:CDS | 35.0% | |
| AACCTTTCCTTATCCTGATA+CGG | + | chr1.3:47890121-47890140 | MS.gene53776:CDS | 35.0% | |
| AAGAAACCACACTAAAAGTG+AGG | + | chr1.3:47890081-47890100 | MS.gene53776:CDS | 35.0% | |
| AGGTGTAAAGAAAAGTCAGA+AGG | + | chr1.3:47891118-47891137 | MS.gene53776:CDS | 35.0% | |
| AGTAACTGTAATATTGGGGA+GGG | + | chr1.3:47890032-47890051 | MS.gene53776:CDS | 35.0% | |
| ATGCAGCTTTCACATAATCA+CGG | + | chr1.3:47890658-47890677 | MS.gene53776:intron | 35.0% | |
| CAAAGGATTTGATGCTTCAA+TGG | + | chr1.3:47891211-47891230 | MS.gene53776:CDS | 35.0% | |
| CTCATTCAACAAATAGAAGC+TGG | + | chr1.3:47890757-47890776 | MS.gene53776:intron | 35.0% | |
| GAAATTACTGTGAACAACTG+TGG | + | chr1.3:47890372-47890391 | MS.gene53776:intron | 35.0% | |
| GGTGTAAAGAAAAGTCAGAA+GGG | + | chr1.3:47891119-47891138 | MS.gene53776:CDS | 35.0% | |
| TAGTAACTGTAATATTGGGG+AGG | + | chr1.3:47890031-47890050 | MS.gene53776:CDS | 35.0% | |
| TTAAATAATCTCGACGTTGC+TGG | + | chr1.3:47891236-47891255 | MS.gene53776:CDS | 35.0% | |
| TTGTAGCTTTCACACAATCA+CGG | + | chr1.3:47890420-47890439 | MS.gene53776:intron | 35.0% | |
| ! | ACATGTATCTGATGATGATG+AGG | + | chr1.3:47890001-47890020 | MS.gene53776:CDS | 35.0% |
| ! | CTATAGCTTTTGCAAAACCA+CGG | - | chr1.3:47890345-47890364 | None:intergenic | 35.0% |
| ! | TCTTTTCACTCTTCTTGATC+CGG | - | chr1.3:47891097-47891116 | None:intergenic | 35.0% |
| !!! | TTGTTTTGGTCGAGCATAAT+TGG | + | chr1.3:47890625-47890644 | MS.gene53776:intron | 35.0% |
| !!! | TTTTTGAGATGCTAGTTGCA+TGG | - | chr1.3:47891274-47891293 | None:intergenic | 35.0% |
| AATCCTTTGCCACAAGATTC+TGG | - | chr1.3:47891200-47891219 | None:intergenic | 40.0% | |
| ACGGTTGCCCATAATGATTT+CGG | - | chr1.3:47890326-47890345 | None:intergenic | 40.0% | |
| ACTAAAAGTGAGGAGCTTGA+AGG | + | chr1.3:47890091-47890110 | MS.gene53776:CDS | 40.0% | |
| AGAAGCAGTATCGCTATAGA+TGG | + | chr1.3:47891174-47891193 | MS.gene53776:CDS | 40.0% | |
| AGAAGGGCAGCTATTCTAAA+GGG | + | chr1.3:47891135-47891154 | MS.gene53776:CDS | 40.0% | |
| GTAGTTTATGTTTGGACGGT+GGG | + | chr1.3:47890297-47890316 | MS.gene53776:intron | 40.0% | |
| TATAGATGGCCAGAATCTTG+TGG | + | chr1.3:47891188-47891207 | MS.gene53776:CDS | 40.0% | |
| TGGGTTGCCGAAATCATTAT+GGG | + | chr1.3:47890316-47890335 | MS.gene53776:intron | 40.0% | |
| TGTAGTTTATGTTTGGACGG+TGG | + | chr1.3:47890296-47890315 | MS.gene53776:intron | 40.0% | |
| ! | ATGGCAGATACAAGTTTTGC+AGG | - | chr1.3:47890948-47890967 | None:intergenic | 40.0% |
| ! | CTTTTCACTCTTCTTGATCC+GGG | - | chr1.3:47891096-47891115 | None:intergenic | 40.0% |
| ! | GTATCTGATGATGATGAGGA+TGG | + | chr1.3:47890005-47890024 | MS.gene53776:CDS | 40.0% |
| AACTACTTTCCACCCCCATT+GGG | - | chr1.3:47890787-47890806 | None:intergenic | 45.0% | |
| ACGGTATGTGACGACAATGT+TGG | - | chr1.3:47891050-47891069 | None:intergenic | 45.0% | |
| ACGGTTGCTAGCCATGATTT+CGG | + | chr1.3:47890439-47890458 | MS.gene53776:intron | 45.0% | |
| CACCGTATCAGGATAAGGAA+AGG | - | chr1.3:47890126-47890145 | None:intergenic | 45.0% | |
| CAGAAGGGCAGCTATTCTAA+AGG | + | chr1.3:47891134-47891153 | MS.gene53776:CDS | 45.0% | |
| CTCTACACAACTTCCAGACT+CGG | + | chr1.3:47890202-47890221 | MS.gene53776:CDS | 45.0% | |
| GAAATCATTATGGGCAACCG+TGG | + | chr1.3:47890325-47890344 | MS.gene53776:intron | 45.0% | |
| TCATTCGGCAGATAGAAAGC+TGG | + | chr1.3:47890520-47890539 | MS.gene53776:intron | 45.0% | |
| TCGTCATCAGAAGAGCTTGA+AGG | - | chr1.3:47890152-47890171 | None:intergenic | 45.0% | |
| ! | GTGGGTTGCCGAAATCATTA+TGG | + | chr1.3:47890315-47890334 | MS.gene53776:intron | 45.0% |
| ! | TTCAAGCTCTTCTGATGACG+AGG | + | chr1.3:47890151-47890170 | MS.gene53776:CDS | 45.0% |
| !! | CAAGCTCCTCACTTTTAGTG+TGG | - | chr1.3:47890090-47890109 | None:intergenic | 45.0% |
| !! | CATATGTGGTGGGTTTGAAC+AGG | + | chr1.3:47890058-47890077 | MS.gene53776:CDS | 45.0% |
| ACCGAAAGTCCTTGCCATGT+CGG | + | chr1.3:47891302-47891321 | MS.gene53776:CDS | 50.0% | |
| ACTACTTTCCACCCCCATTG+GGG | - | chr1.3:47890786-47890805 | None:intergenic | 50.0% | |
| ACTCTCCTGCGAATGTTGTC+GGG | + | chr1.3:47889907-47889926 | MS.gene53776:CDS | 50.0% | |
| ATAGAAAGCTGGTCGCTCCA+AGG | + | chr1.3:47890531-47890550 | MS.gene53776:intron | 50.0% | |
| ATAGAAGCTGGTCACCCCAA+TGG | + | chr1.3:47890769-47890788 | MS.gene53776:intron | 50.0% | |
| ATAGCTTCTCCGACATGGCA+AGG | - | chr1.3:47891314-47891333 | None:intergenic | 50.0% | |
| ATTGGGGAGGGACACATATG+TGG | + | chr1.3:47890044-47890063 | MS.gene53776:CDS | 50.0% | |
| CAACTACTTTCCACCCCCAT+TGG | - | chr1.3:47890788-47890807 | None:intergenic | 50.0% | |
| CAATGGGGGTGGAAAGTAGT+TGG | + | chr1.3:47890786-47890805 | MS.gene53776:intron | 50.0% | |
| CACCGGATCATACACATCAG+GGG | - | chr1.3:47891027-47891046 | None:intergenic | 50.0% | |
| CACTCTCCTGCGAATGTTGT+CGG | + | chr1.3:47889906-47889925 | MS.gene53776:CDS | 50.0% | |
| CTTGAAGGCAACACCGTATC+AGG | - | chr1.3:47890137-47890156 | None:intergenic | 50.0% | |
| GCACCGGATCATACACATCA+GGG | - | chr1.3:47891028-47891047 | None:intergenic | 50.0% | |
| GGCAACACCGTATCAGGATA+AGG | - | chr1.3:47890131-47890150 | None:intergenic | 50.0% | |
| TAGAAAGCTGGTCGCTCCAA+GGG | + | chr1.3:47890532-47890551 | MS.gene53776:intron | 50.0% | |
| TAGAAGCTGGTCACCCCAAT+GGG | + | chr1.3:47890770-47890789 | MS.gene53776:intron | 50.0% | |
| TCCGACATGGCAAGGACTTT+CGG | - | chr1.3:47891306-47891325 | None:intergenic | 50.0% | |
| TGCTCATAGCTTCTCCGACA+TGG | - | chr1.3:47891319-47891338 | None:intergenic | 50.0% | |
| TGGCCAGAATCTTGTGGCAA+AGG | + | chr1.3:47891194-47891213 | MS.gene53776:CDS | 50.0% | |
| TGTGACGACAATGTTGGCAC+CGG | - | chr1.3:47891044-47891063 | None:intergenic | 50.0% | |
| ! | AAGCTCTTCTGATGACGAGG+AGG | + | chr1.3:47890154-47890173 | MS.gene53776:CDS | 50.0% |
| ! | ACAAGTTTTGCAGGTGCCTG+TGG | - | chr1.3:47890939-47890958 | None:intergenic | 50.0% |
| !! | TGGTGGGTTAGCCGAAATCA+TGG | - | chr1.3:47890453-47890472 | None:intergenic | 50.0% |
| AGAAAGCTGGTCGCTCCAAG+GGG | + | chr1.3:47890533-47890552 | MS.gene53776:intron | 55.0% | |
| AGAAGCTGGTCACCCCAATG+GGG | + | chr1.3:47890771-47890790 | MS.gene53776:intron | 55.0% | |
| CAACTACTTTCCACCCCCCT+TGG | - | chr1.3:47890551-47890570 | None:intergenic | 55.0% | |
| CAAGGGGGGTGGAAAGTAGT+TGG | + | chr1.3:47890549-47890568 | MS.gene53776:intron | 55.0% | |
| CGACAACATTCGCAGGAGAG+TGG | - | chr1.3:47889908-47889927 | None:intergenic | 55.0% | |
| GCGATCCCAAGTGTTTCTCG+CGG | - | chr1.3:47890980-47890999 | None:intergenic | 55.0% | |
| GGCCCCTGATGTGTATGATC+CGG | + | chr1.3:47891022-47891041 | MS.gene53776:CDS | 55.0% | |
| GGGAGGGACACATATGTGGT+GGG | + | chr1.3:47890048-47890067 | MS.gene53776:CDS | 55.0% | |
| GGTAGCCGCGAGAAACACTT+GGG | + | chr1.3:47890972-47890991 | MS.gene53776:CDS | 55.0% | |
| TGGCAAGGACTTTCGGTAGC+TGG | - | chr1.3:47891299-47891318 | None:intergenic | 55.0% | |
| TTTCTCGCGGCTACCCTTCA+TGG | - | chr1.3:47890967-47890986 | None:intergenic | 55.0% | |
| ! | GGCACCGGATCATACACATC+AGG | - | chr1.3:47891029-47891048 | None:intergenic | 55.0% |
| ! | TCCAGACTCGGTTTCTCAGC+CGG | + | chr1.3:47890214-47890233 | MS.gene53776:CDS | 55.0% |
| ! | TCTGATGACGAGGAGGCTGA+TGG | + | chr1.3:47890161-47890180 | MS.gene53776:CDS | 55.0% |
| AAAGCTGGTCGCTCCAAGGG+GGG | + | chr1.3:47890535-47890554 | MS.gene53776:intron | 60.0% | |
| ACCGGCTGAGAAACCGAGTC+TGG | - | chr1.3:47890218-47890237 | None:intergenic | 60.0% | |
| GAAAGCTGGTCGCTCCAAGG+GGG | + | chr1.3:47890534-47890553 | MS.gene53776:intron | 60.0% | |
| GAAGCTGGTCACCCCAATGG+GGG | + | chr1.3:47890772-47890791 | MS.gene53776:intron | 60.0% | |
| GGGGAGGGACACATATGTGG+TGG | + | chr1.3:47890047-47890066 | MS.gene53776:CDS | 60.0% | |
| GGGTAGCCGCGAGAAACACT+TGG | + | chr1.3:47890971-47890990 | MS.gene53776:CDS | 60.0% | |
| TCGCACCCGACAACATTCGC+AGG | - | chr1.3:47889915-47889934 | None:intergenic | 60.0% | |
| GCTGGTCACCCCAATGGGGG+TGG | + | chr1.3:47890775-47890794 | MS.gene53776:intron | 70.0% | |
| GCTGGTCGCTCCAAGGGGGG+TGG | + | chr1.3:47890538-47890557 | MS.gene53776:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 47889897 | 47891376 | 47889897 | ID=MS.gene53776 |
| chr1.3 | mRNA | 47889897 | 47891376 | 47889897 | ID=MS.gene53776.t1;Parent=MS.gene53776 |
| chr1.3 | exon | 47889897 | 47890235 | 47889897 | ID=MS.gene53776.t1.exon1;Parent=MS.gene53776.t1 |
| chr1.3 | CDS | 47889897 | 47890235 | 47889897 | ID=cds.MS.gene53776.t1;Parent=MS.gene53776.t1 |
| chr1.3 | exon | 47890942 | 47891376 | 47890942 | ID=MS.gene53776.t1.exon2;Parent=MS.gene53776.t1 |
| chr1.3 | CDS | 47890942 | 47891376 | 47890942 | ID=cds.MS.gene53776.t1;Parent=MS.gene53776.t1 |
| Gene Sequence |
| Protein sequence |
