AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene25134


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene25134.t1 MTR_8g020700 94.678 357 19 0 1 357 1 357 0.0 703
MS.gene25134.t1 MTR_8g020690 71.944 360 98 1 1 357 1 360 0.0 547
MS.gene25134.t1 MTR_8g020700 90.980 255 23 0 1 255 1 255 6.86e-174 484
MS.gene25134.t1 MTR_8g076900 62.534 363 129 2 1 357 1 362 1.03e-168 474
MS.gene25134.t1 MTR_3g467270 62.162 370 124 4 1 356 1 368 1.07e-167 472
MS.gene25134.t1 MTR_4g018820 63.056 360 129 2 1 357 1 359 1.73e-166 469
MS.gene25134.t1 MTR_6g056070 61.345 357 136 2 1 356 1 356 7.86e-162 457
MS.gene25134.t1 MTR_5g020940 58.602 372 138 3 1 357 11 381 2.91e-160 454
MS.gene25134.t1 MTR_8g077040 58.667 375 128 3 1 355 1 368 4.18e-159 451
MS.gene25134.t1 MTR_8g076900 68.699 246 76 1 1 246 1 245 1.03e-124 359
MS.gene25134.t1 MTR_3g117060 41.645 377 192 4 1 357 1 369 9.65e-104 310
MS.gene25134.t1 MTR_5g046110 40.997 361 206 2 1 355 61 420 3.15e-95 290
MS.gene25134.t1 MTR_3g467560 40.217 368 202 4 1 355 25 387 9.56e-92 280
MS.gene25134.t1 MTR_1g022465 43.158 380 189 7 1 356 1 377 7.11e-90 275
MS.gene25134.t1 MTR_1g022455 41.689 379 197 6 1 356 1 378 2.36e-89 273
MS.gene25134.t1 MTR_7g084620 38.859 368 197 7 6 355 6 363 5.59e-83 256
MS.gene25134.t1 MTR_7g084350 37.127 369 210 5 3 355 1 363 8.91e-79 246
MS.gene25134.t1 MTR_8g077030 56.164 219 74 2 1 219 1 197 5.18e-78 249
MS.gene25134.t1 MTR_7g084330 34.000 350 188 9 24 355 7 331 7.06e-57 188
MS.gene25134.t1 MTR_3g054330 32.888 374 228 8 1 354 10 380 2.46e-56 188
MS.gene25134.t1 MTR_3g052700 31.414 382 227 10 1 354 13 387 3.65e-53 180
MS.gene25134.t1 MTR_1g108660 35.185 324 180 9 45 356 33 338 1.47e-52 177
MS.gene25134.t1 MTR_5g093900 31.688 385 224 11 1 354 13 389 3.28e-52 178
MS.gene25134.t1 MTR_7g084340 30.328 122 75 1 244 355 8 129 6.71e-14 68.6
MS.gene25134.t1 MTR_6g015620 30.645 124 69 2 248 357 18 138 9.54e-14 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene25134.t1 AT5G66430 39.833 359 200 4 9 356 1 354 6.50e-91 276
MS.gene25134.t1 AT4G36470 40.970 371 198 6 2 356 5 370 1.19e-89 274
MS.gene25134.t1 AT5G04380 41.111 360 192 4 9 356 38 389 4.83e-89 273
MS.gene25134.t1 AT3G21950 41.081 370 195 6 6 356 3 368 2.83e-88 270
MS.gene25134.t1 AT5G04370 41.408 355 196 4 9 356 41 390 3.79e-88 271
MS.gene25134.t1 AT3G11480 39.385 358 206 4 5 356 27 379 5.46e-88 270
MS.gene25134.t1 AT5G04370 41.408 355 196 4 9 356 46 395 8.31e-88 270
MS.gene25134.t1 AT5G04370 41.408 355 196 4 9 356 60 409 1.00e-87 270
MS.gene25134.t1 AT1G19640 41.753 388 192 6 1 355 1 387 7.96e-87 267
MS.gene25134.t1 AT5G38020 40.541 370 197 6 6 356 3 368 1.52e-86 266
MS.gene25134.t1 AT5G04380 40.833 360 186 5 9 356 34 378 7.27e-85 262
MS.gene25134.t1 AT5G04380 41.905 315 170 2 50 356 9 318 8.84e-83 254
MS.gene25134.t1 AT2G14060 39.566 369 204 5 3 356 8 372 2.37e-82 255
MS.gene25134.t1 AT3G21950 37.562 402 196 7 6 356 3 400 1.55e-81 254
MS.gene25134.t1 AT5G38020 40.867 323 169 5 52 356 11 329 1.02e-77 242
MS.gene25134.t1 AT1G68040 35.262 363 208 7 9 356 13 363 1.38e-65 212
MS.gene25134.t1 AT2G14060 44.397 232 124 3 3 233 8 235 1.76e-62 200
MS.gene25134.t1 AT1G15125 36.336 333 189 9 9 331 1 320 4.74e-59 194
MS.gene25134.t1 AT5G37970 34.316 373 208 11 5 356 6 362 8.81e-52 176
MS.gene25134.t1 AT5G55250 32.092 349 215 8 1 330 13 358 2.93e-51 175
MS.gene25134.t1 AT5G37990 33.780 373 210 12 5 356 6 362 1.88e-50 172
MS.gene25134.t1 AT4G26420 31.638 354 207 11 3 331 7 350 6.95e-49 169
MS.gene25134.t1 AT5G56300 30.682 352 214 10 3 332 18 361 8.59e-47 164
MS.gene25134.t1 AT5G38100 33.138 341 196 10 9 333 10 334 4.02e-46 161
MS.gene25134.t1 AT5G55250 33.562 292 174 7 56 330 32 320 7.08e-46 160
MS.gene25134.t1 AT3G44840 33.235 340 205 7 9 341 7 331 1.81e-45 159
MS.gene25134.t1 AT5G38100 34.122 296 166 9 51 333 32 311 1.11e-44 157
MS.gene25134.t1 AT5G38780 31.487 343 201 9 9 333 10 336 6.27e-44 155
MS.gene25134.t1 AT1G66700 31.118 331 201 7 9 328 9 323 2.36e-42 151
MS.gene25134.t1 AT1G66720 31.003 329 203 6 9 328 9 322 5.39e-42 150
MS.gene25134.t1 AT3G44870 34.503 342 195 9 9 341 7 328 8.31e-42 150
MS.gene25134.t1 AT5G38780 32.323 297 171 8 51 333 7 287 4.10e-41 147
MS.gene25134.t1 AT3G44860 34.195 348 191 11 9 341 7 331 1.73e-40 146
MS.gene25134.t1 AT1G15125 39.450 218 111 7 9 217 1 206 5.66e-39 139
MS.gene25134.t1 AT4G26420 37.004 227 123 7 3 218 7 224 8.24e-39 139
MS.gene25134.t1 AT4G26420 37.104 221 119 7 9 218 1 212 9.45e-38 136
MS.gene25134.t1 AT1G66700 37.387 222 116 5 9 220 9 217 7.41e-35 129
MS.gene25134.t1 AT5G38100 39.091 220 106 8 9 213 10 216 6.28e-34 126
MS.gene25134.t1 AT5G38100 39.091 220 106 8 9 213 10 216 6.95e-34 125
MS.gene25134.t1 AT1G66690 30.514 331 203 7 9 328 9 323 9.51e-34 128

Find 67 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGAAATCAAAACTAAAA+TGG 0.175532 8.4:+72885742 MS.gene25134:CDS
ATGGGTCCTTGTTACTTCTT+TGG 0.197736 8.4:+72885761 MS.gene25134:CDS
TGTTACTTCTTTGGGGTTCC+TGG 0.212711 8.4:+72885770 MS.gene25134:CDS
TAAAATATTGTTGCTACTAT+TGG 0.215282 8.4:+72886715 MS.gene25134:CDS
GTTATAGCTTCATCTCTTAT+TGG 0.223546 8.4:-72885491 None:intergenic
TGGGTCCTTGTTACTTCTTT+GGG 0.234467 8.4:+72885762 MS.gene25134:CDS
AGTCTTGCAATTGCAGATTT+AGG 0.234507 8.4:+72885542 MS.gene25134:CDS
CAATGATATGATAACATTAA+TGG 0.254963 8.4:-72887672 None:intergenic
GCAGATTTAGGTTGTTCTTC+TGG 0.263073 8.4:+72885554 MS.gene25134:CDS
TATAGGGAAATGCAGTTTCT+TGG 0.287192 8.4:+72885462 MS.gene25134:intron
ATCTGCAATTGCAAGACTTC+TGG 0.289580 8.4:-72885537 None:intergenic
GATACCACAAACAAAGTATT+TGG 0.320633 8.4:-72885578 None:intergenic
ATCATTTGCCATCAATCGTT+TGG 0.330535 8.4:+72887466 MS.gene25134:CDS
TCTTAATGGCATGGTCTTAG+AGG 0.335242 8.4:+72886755 MS.gene25134:CDS
AAAATATTGTTGCTACTATT+GGG 0.341372 8.4:+72886716 MS.gene25134:CDS
TCAATTTAAAAGAGACTTCT+CGG 0.358277 8.4:+72886602 MS.gene25134:CDS
TTGTTTGAAGCGTATGTAGA+TGG 0.391779 8.4:+72887491 MS.gene25134:CDS
GAGATGAATGGTTCAATTGT+TGG 0.392209 8.4:-72885631 None:intergenic
AAACAACTCCAAACGATTGA+TGG 0.396917 8.4:-72887474 None:intergenic
ATAAGAGATGAAGCTATAAC+TGG 0.399206 8.4:+72885494 MS.gene25134:CDS
TATGCAACAGGGGATTATAA+AGG 0.406446 8.4:+72887364 MS.gene25134:intron
AATGGCCTTCAGTTTCTCCT+TGG 0.406894 8.4:-72887654 None:intergenic
ATTCCTCTTACAGCCTTCAT+TGG 0.420256 8.4:+72885840 MS.gene25134:CDS
ATGGCCTTCAGTTTCTCCTT+GGG 0.426553 8.4:-72887653 None:intergenic
ACTTCCAACTCTACTTCATA+TGG 0.429360 8.4:-72887431 None:intergenic
TGGACCAAATACTTTGTTTG+TGG 0.436251 8.4:+72885574 MS.gene25134:CDS
AGCTGCTGTTCTTAATGGCA+TGG 0.438077 8.4:+72886746 MS.gene25134:CDS
AATGAAATCAAAACTAAAAT+GGG 0.439241 8.4:+72885743 MS.gene25134:CDS
TATGCTTTAACAACATTTGA+GGG 0.450868 8.4:-72886573 None:intergenic
ATCAGATATTATCATGGTTG+TGG 0.467980 8.4:+72885598 MS.gene25134:CDS
ATGAAATGCAAACTTTGATC+AGG 0.468189 8.4:-72885815 None:intergenic
CCATTGGTAGTTAGCCACTT+TGG 0.476037 8.4:+72887572 MS.gene25134:CDS
CAGCCTTCATTGGCTTTCAA+AGG 0.482562 8.4:+72885850 MS.gene25134:CDS
TATGGAGATGGATAATATTG+AGG 0.497048 8.4:-72887413 None:intergenic
GAGAGCTATGGCTGAACCAT+TGG 0.503480 8.4:+72887556 MS.gene25134:CDS
TAACCTTTGAAAGCCAATGA+AGG 0.511219 8.4:-72885853 None:intergenic
GTATGCTTTAACAACATTTG+AGG 0.517154 8.4:-72886574 None:intergenic
ATGGAGATGGATAATATTGA+GGG 0.519174 8.4:-72887412 None:intergenic
GGGTCCTTGTTACTTCTTTG+GGG 0.519835 8.4:+72885763 MS.gene25134:CDS
ATCTCCATATGAAGTAGAGT+TGG 0.524694 8.4:+72887427 MS.gene25134:CDS
GGGCAGGTAGTGCACATGAA+TGG 0.526022 8.4:+72884468 MS.gene25134:CDS
TGTGGTATCAGATATTATCA+TGG 0.532840 8.4:+72885592 MS.gene25134:CDS
CGTGCAGAGGAACTAGTTGA+AGG 0.536965 8.4:+72886639 MS.gene25134:CDS
AAGCCAATGAAGGCTGTAAG+AGG 0.537376 8.4:-72885843 None:intergenic
AACTCTACTTCATATGGAGA+TGG 0.539469 8.4:-72887425 None:intergenic
GAGTTGGAAGTTCTCAATGA+AGG 0.547450 8.4:+72887443 MS.gene25134:CDS
TGGAAAGTGTGTTGGAGTAG+AGG 0.547899 8.4:-72885517 None:intergenic
TCTTGTACTCGGGAGATGAA+TGG 0.553449 8.4:-72885643 None:intergenic
GTGCAGAGGAACTAGTTGAA+GGG 0.554125 8.4:+72886640 MS.gene25134:CDS
CTATTATATCTTCACCAAAG+TGG 0.556718 8.4:-72887586 None:intergenic
TCATGTGCACTACCTGCCCC+AGG 0.561033 8.4:-72884464 None:intergenic
TGTGTAGTTGATGTAAATGT+TGG 0.562245 8.4:-72886547 None:intergenic
TTATTGTTCTCTATACCCTC+CGG 0.563075 8.4:-72886522 None:intergenic
GTGCACATGAATGGAGGTGA+TGG 0.587528 8.4:+72884477 MS.gene25134:CDS
TGCAGAGGAACTAGTTGAAG+GGG 0.594526 8.4:+72886641 MS.gene25134:CDS
AAGACTTCTGGAAAGTGTGT+TGG 0.600725 8.4:-72885525 None:intergenic
GGGAATTATTAGGTTCCGGA+GGG 0.604890 8.4:+72886507 MS.gene25134:intron
TGCATGGTTCTAACAATGAG+TGG 0.606537 8.4:+72886666 MS.gene25134:CDS
CCAAAGTGGCTAACTACCAA+TGG 0.610594 8.4:-72887572 None:intergenic
GGGGAATTATTAGGTTCCGG+AGG 0.612700 8.4:+72886506 MS.gene25134:intron
CATAATTGATAAATTACCCA+AGG 0.614571 8.4:+72887637 MS.gene25134:CDS
CAGGTAGTGCACATGAATGG+AGG 0.640551 8.4:+72884471 MS.gene25134:CDS
GGAACCCCAAAGAAGTAACA+AGG 0.641016 8.4:-72885767 None:intergenic
ATTACCCAAGGAGAAACTGA+AGG 0.647612 8.4:+72887649 MS.gene25134:CDS
TGCACGATTAATGAGAGCTA+TGG 0.650401 8.4:+72887544 MS.gene25134:CDS
ACTCTGTTATAGAAAGAACC+AGG 0.668917 8.4:-72885788 None:intergenic
GCAGAGGAACTAGTTGAAGG+GGG 0.710839 8.4:+72886642 MS.gene25134:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTGATTAAATAATATCTA+AGG - chr8.4:72885249-72885268 None:intergenic 10.0%
!!! ATTGATTTTATTTGTTAATA+TGG + chr8.4:72886485-72886504 MS.gene25134:intron 10.0%
!!! ATTTATCAATTATGATTTTT+TGG - chr8.4:72887631-72887650 None:intergenic 10.0%
!!! ATTTTTTAAAATTTCTCAAA+AGG + chr8.4:72885067-72885086 MS.gene25134:intron 10.0%
!!! TAGTTTATTTTTTAAAACAA+TGG - chr8.4:72885027-72885046 None:intergenic 10.0%
!!! TCATTTTAAACATTTTATTT+TGG + chr8.4:72885144-72885163 MS.gene25134:intron 10.0%
!!! TTGATTTTATTTGTTAATAT+GGG + chr8.4:72886486-72886505 MS.gene25134:intron 10.0%
!! AAATGAAATCAAAACTAAAA+TGG + chr8.4:72885742-72885761 MS.gene25134:CDS 15.0%
!! AATGAAATCAAAACTAAAAT+GGG + chr8.4:72885743-72885762 MS.gene25134:CDS 15.0%
!! ATTAAAAAATATCTTGTACT+CGG - chr8.4:72885657-72885676 None:intergenic 15.0%
!! TATAAAATGTTTAAAAGAGT+TGG + chr8.4:72886053-72886072 MS.gene25134:intron 15.0%
!! TTCTTTATTATGTTGATATA+GGG + chr8.4:72885446-72885465 MS.gene25134:intron 15.0%
!! TTTCTTTATTATGTTGATAT+AGG + chr8.4:72885445-72885464 MS.gene25134:intron 15.0%
!!! AACAATGATTGTAATTTTTT+AGG - chr8.4:72887209-72887228 None:intergenic 15.0%
!!! AATTAAAAAAACTTGTTTGA+AGG - chr8.4:72885393-72885412 None:intergenic 15.0%
!!! ATATTTTTTAATGATGTTTC+AGG + chr8.4:72885665-72885684 MS.gene25134:CDS 15.0%
!!! CATAAAAAACTTTTTTTCTT+TGG - chr8.4:72885282-72885301 None:intergenic 15.0%
!!! TGATTTTATTTGTTAATATG+GGG + chr8.4:72886487-72886506 MS.gene25134:intron 15.0%
!! AAAATATTGTTGCTACTATT+GGG + chr8.4:72886716-72886735 MS.gene25134:CDS 20.0%
!! AATCATTGTTGTCTTAATTT+AGG + chr8.4:72887219-72887238 MS.gene25134:intron 20.0%
!! AGTTCTTAATGATATTATTG+TGG - chr8.4:72884944-72884963 None:intergenic 20.0%
!! ATCATTGTTGTCTTAATTTA+GGG + chr8.4:72887220-72887239 MS.gene25134:intron 20.0%
!! CAATGATATGATAACATTAA+TGG - chr8.4:72887675-72887694 None:intergenic 20.0%
!! GAAACACAATATAAAAAATG+AGG - chr8.4:72885888-72885907 None:intergenic 20.0%
!! GAATGAAAAATAAAACAACT+TGG - chr8.4:72886882-72886901 None:intergenic 20.0%
!! GTTCTTAATGATATTATTGT+GGG - chr8.4:72884943-72884962 None:intergenic 20.0%
!! TAAAATATTGTTGCTACTAT+TGG + chr8.4:72886715-72886734 MS.gene25134:CDS 20.0%
!! TTAAAAAATATCTTGTACTC+GGG - chr8.4:72885656-72885675 None:intergenic 20.0%
!! TTTAAATTGAGATTGTCTAT+AGG + chr8.4:72884871-72884890 MS.gene25134:intron 20.0%
!!! AATAACATTAACTACCTTTT+TGG + chr8.4:72885109-72885128 MS.gene25134:intron 20.0%
!!! CATATTTAACGGTTTTAAAA+CGG + chr8.4:72884999-72885018 MS.gene25134:intron 20.0%
!!! TGATTTTAAGAGAAAAAGAA+TGG + chr8.4:72885334-72885353 MS.gene25134:intron 20.0%
!!! TTTTACGTTCGTATAATTTT+TGG + chr8.4:72884568-72884587 MS.gene25134:intron 20.0%
!!! TTTTTCATTCCATAAAATGT+AGG + chr8.4:72886892-72886911 MS.gene25134:intron 20.0%
! AAGAACTATCTTTAATGGTA+TGG - chr8.4:72884613-72884632 None:intergenic 25.0%
! AATATGTACAAATAGGAAGT+TGG - chr8.4:72886857-72886876 None:intergenic 25.0%
! AGGGTTAGAATAAACTTATT+TGG + chr8.4:72885970-72885989 MS.gene25134:intron 25.0%
! ATATGTACAAATAGGAAGTT+GGG - chr8.4:72886856-72886875 None:intergenic 25.0%
! CAAATGTGATAAGTGTTTAT+TGG + chr8.4:72886234-72886253 MS.gene25134:intron 25.0%
! CATAATTGATAAATTACCCA+AGG + chr8.4:72887637-72887656 MS.gene25134:CDS 25.0%
! TATGCTTTAACAACATTTGA+GGG - chr8.4:72886576-72886595 None:intergenic 25.0%
! TCAATTTAAAAGAGACTTCT+CGG + chr8.4:72886602-72886621 MS.gene25134:CDS 25.0%
! TGTTAATATGGGGAATTATT+AGG + chr8.4:72886497-72886516 MS.gene25134:intron 25.0%
! TTCTACGATTGCATATTTAA+CGG + chr8.4:72884988-72885007 MS.gene25134:intron 25.0%
! TTGTTCAAAAACATACTCAA+CGG - chr8.4:72887134-72887153 None:intergenic 25.0%
!! ATATGATTTTTGTATGCAAC+AGG + chr8.4:72887352-72887371 MS.gene25134:intron 25.0%
!! ATCGATTAAACCGATTTAAA+AGG + chr8.4:72887037-72887056 MS.gene25134:intron 25.0%
!! CAACAATATTTTATGTCACA+TGG - chr8.4:72886708-72886727 None:intergenic 25.0%
!! GATTTTATGAGAAACCAAAA+AGG - chr8.4:72885126-72885145 None:intergenic 25.0%
!! GGATATGAGAAATTTGATTT+GGG + chr8.4:72884792-72884811 MS.gene25134:intron 25.0%
!! TATGATTTTTGTATGCAACA+GGG + chr8.4:72887353-72887372 MS.gene25134:intron 25.0%
!! TTAGGATTACCTACATTTTA+TGG - chr8.4:72886904-72886923 None:intergenic 25.0%
!! TTGTTTTCATTAATGCTTCT+AGG + chr8.4:72886088-72886107 MS.gene25134:intron 25.0%
!!! AGAAATTTGATTTGGGATTT+TGG + chr8.4:72884799-72884818 MS.gene25134:intron 25.0%
!!! AGAAGCATTAATGAAAACAA+GGG - chr8.4:72886088-72886107 None:intergenic 25.0%
!!! CAATTATGATTTTTTGGTGA+CGG - chr8.4:72887625-72887644 None:intergenic 25.0%
!!! GAAATTTGATTTGGGATTTT+GGG + chr8.4:72884800-72884819 MS.gene25134:intron 25.0%
!!! GGTTTCTTTGATTAGTTTTA+GGG + chr8.4:72887245-72887264 MS.gene25134:intron 25.0%
!!! GTATAATTTTTGGAAGATGA+AGG + chr8.4:72884578-72884597 MS.gene25134:intron 25.0%
!!! TAGAAGCATTAATGAAAACA+AGG - chr8.4:72886089-72886108 None:intergenic 25.0%
ATAAGAGATGAAGCTATAAC+TGG + chr8.4:72885494-72885513 MS.gene25134:CDS 30.0%
ATCAGATATTATCATGGTTG+TGG + chr8.4:72885598-72885617 MS.gene25134:CDS 30.0%
ATGAAATGCAAACTTTGATC+AGG - chr8.4:72885818-72885837 None:intergenic 30.0%
ATGGAGATGGATAATATTGA+GGG - chr8.4:72887415-72887434 None:intergenic 30.0%
CAACAACATTTAACTATTGC+TGG + chr8.4:72887085-72887104 MS.gene25134:intron 30.0%
CAGCAATAGTTAAATGTTGT+TGG - chr8.4:72887087-72887106 None:intergenic 30.0%
CTATTATATCTTCACCAAAG+TGG - chr8.4:72887589-72887608 None:intergenic 30.0%
CTTGGTGAATATGTACAAAT+AGG - chr8.4:72886864-72886883 None:intergenic 30.0%
GGCAAAAGAACTATCTTTAA+TGG - chr8.4:72884618-72884637 None:intergenic 30.0%
GGGATATGAGAAATTTGATT+TGG + chr8.4:72884791-72884810 MS.gene25134:intron 30.0%
GTATGCTTTAACAACATTTG+AGG - chr8.4:72886577-72886596 None:intergenic 30.0%
GTTATAGCTTCATCTCTTAT+TGG - chr8.4:72885494-72885513 None:intergenic 30.0%
TAACCCTGCAAAAAAATACA+AGG - chr8.4:72885957-72885976 None:intergenic 30.0%
TATGGAGATGGATAATATTG+AGG - chr8.4:72887416-72887435 None:intergenic 30.0%
TGCAAAAAACTCATTTCATC+AGG + chr8.4:72884512-72884531 MS.gene25134:CDS 30.0%
TGTGGTATCAGATATTATCA+TGG + chr8.4:72885592-72885611 MS.gene25134:CDS 30.0%
TGTGTGTGTAAATGCATATA+TGG - chr8.4:72886320-72886339 None:intergenic 30.0%
! AAAAATACAAGGTGTTTCCT+AGG - chr8.4:72885946-72885965 None:intergenic 30.0%
! AAAATACAAGGTGTTTCCTA+GGG - chr8.4:72885945-72885964 None:intergenic 30.0%
! ATGATTTTTGTATGCAACAG+GGG + chr8.4:72887354-72887373 MS.gene25134:intron 30.0%
! CGTTGATTAATTTATACCCT+AGG + chr8.4:72885926-72885945 MS.gene25134:intron 30.0%
! CTTTTCATAACCAGAATAGA+TGG - chr8.4:72884655-72884674 None:intergenic 30.0%
! GAAGCATTAATGAAAACAAG+GGG - chr8.4:72886087-72886106 None:intergenic 30.0%
! GATACCACAAACAAAGTATT+TGG - chr8.4:72885581-72885600 None:intergenic 30.0%
! GGTTCAATCACCTTTTAAAT+CGG - chr8.4:72887050-72887069 None:intergenic 30.0%
! TAAAGATAGTTCTTTTGCCA+TGG + chr8.4:72884619-72884638 MS.gene25134:intron 30.0%
! TGTGTAGTTGATGTAAATGT+TGG - chr8.4:72886550-72886569 None:intergenic 30.0%
! TTGTTGTCTTAATTTAGGGT+CGG + chr8.4:72887224-72887243 MS.gene25134:intron 30.0%
!!! AACACCTTGTATTTTTTTGC+AGG + chr8.4:72885950-72885969 MS.gene25134:intron 30.0%
!!! ACACCTTGTATTTTTTTGCA+GGG + chr8.4:72885951-72885970 MS.gene25134:intron 30.0%
!!! CGGTTTCTTTGATTAGTTTT+AGG + chr8.4:72887244-72887263 MS.gene25134:intron 30.0%
AAACAACTCCAAACGATTGA+TGG - chr8.4:72887477-72887496 None:intergenic 35.0%
AACTCTACTTCATATGGAGA+TGG - chr8.4:72887428-72887447 None:intergenic 35.0%
ACTCTGTTATAGAAAGAACC+AGG - chr8.4:72885791-72885810 None:intergenic 35.0%
ACTTCCAACTCTACTTCATA+TGG - chr8.4:72887434-72887453 None:intergenic 35.0%
AGTCTTGCAATTGCAGATTT+AGG + chr8.4:72885542-72885561 MS.gene25134:CDS 35.0%
ATCATTTGCCATCAATCGTT+TGG + chr8.4:72887466-72887485 MS.gene25134:CDS 35.0%
ATCTCCATATGAAGTAGAGT+TGG + chr8.4:72887427-72887446 MS.gene25134:CDS 35.0%
ATTTCTCATATCCCTTCTCT+CGG - chr8.4:72884785-72884804 None:intergenic 35.0%
GAGATGAATGGTTCAATTGT+TGG - chr8.4:72885634-72885653 None:intergenic 35.0%
GGCGAATTTCTCGAATTTAA+AGG - chr8.4:72884689-72884708 None:intergenic 35.0%
TACTCAACGGCAATTAATTG+TGG - chr8.4:72887121-72887140 None:intergenic 35.0%
TATAGGGAAATGCAGTTTCT+TGG + chr8.4:72885462-72885481 MS.gene25134:intron 35.0%
TATGCAACAGGGGATTATAA+AGG + chr8.4:72887364-72887383 MS.gene25134:intron 35.0%
TATGGGGAATTATTAGGTTC+CGG + chr8.4:72886503-72886522 MS.gene25134:intron 35.0%
TTATTGTTCTCTATACCCTC+CGG - chr8.4:72886525-72886544 None:intergenic 35.0%
TTGCTCAAAAACATACCCAA+AGG + chr8.4:72886956-72886975 MS.gene25134:intron 35.0%
TTGTTGGACACTTACTAAAG+TGG - chr8.4:72887071-72887090 None:intergenic 35.0%
! TAACCTTTGAAAGCCAATGA+AGG - chr8.4:72885856-72885875 None:intergenic 35.0%
! TGGACCAAATACTTTGTTTG+TGG + chr8.4:72885574-72885593 MS.gene25134:CDS 35.0%
! TTGTTTGAAGCGTATGTAGA+TGG + chr8.4:72887491-72887510 MS.gene25134:CDS 35.0%
!! CTTTTAGCTGCTGTTCTTAA+TGG + chr8.4:72886741-72886760 MS.gene25134:CDS 35.0%
!! TTTTGAACACTAGTTTCTCG+AGG - chr8.4:72884755-72884774 None:intergenic 35.0%
!!! TGAGCAACTGTTCACTTTTT+AGG - chr8.4:72886922-72886941 None:intergenic 35.0%
AGTGTGTGTACATGAAGATG+TGG - chr8.4:72886290-72886309 None:intergenic 40.0%
ATCTGCAATTGCAAGACTTC+TGG - chr8.4:72885540-72885559 None:intergenic 40.0%
ATGCATTGAGCCATCTATTC+TGG + chr8.4:72884642-72884661 MS.gene25134:intron 40.0%
ATTACCCAAGGAGAAACTGA+AGG + chr8.4:72887649-72887668 MS.gene25134:CDS 40.0%
ATTCCTCTTACAGCCTTCAT+TGG + chr8.4:72885840-72885859 MS.gene25134:CDS 40.0%
CAGGTATGTGTGTGTGTATA+AGG + chr8.4:72884531-72884550 MS.gene25134:intron 40.0%
GAGTTGGAAGTTCTCAATGA+AGG + chr8.4:72887443-72887462 MS.gene25134:CDS 40.0%
TGCACGATTAATGAGAGCTA+TGG + chr8.4:72887544-72887563 MS.gene25134:CDS 40.0%
! AAGACTTCTGGAAAGTGTGT+TGG - chr8.4:72885528-72885547 None:intergenic 40.0%
! ATGGGTCCTTGTTACTTCTT+TGG + chr8.4:72885761-72885780 MS.gene25134:CDS 40.0%
! TCTTAATGGCATGGTCTTAG+AGG + chr8.4:72886755-72886774 MS.gene25134:CDS 40.0%
! TGGGTCCTTGTTACTTCTTT+GGG + chr8.4:72885762-72885781 MS.gene25134:CDS 40.0%
!! GCAGATTTAGGTTGTTCTTC+TGG + chr8.4:72885554-72885573 MS.gene25134:CDS 40.0%
!! TGCATGGTTCTAACAATGAG+TGG + chr8.4:72886666-72886685 MS.gene25134:CDS 40.0%
!! TTTTCTCAAGTATCGTGCAG+AGG + chr8.4:72886626-72886645 MS.gene25134:CDS 40.0%
AAGCCAATGAAGGCTGTAAG+AGG - chr8.4:72885846-72885865 None:intergenic 45.0%
AATGGCCTTCAGTTTCTCCT+TGG - chr8.4:72887657-72887676 None:intergenic 45.0%
AGCTGCTGTTCTTAATGGCA+TGG + chr8.4:72886746-72886765 MS.gene25134:CDS 45.0%
ATGGCCTTCAGTTTCTCCTT+GGG - chr8.4:72887656-72887675 None:intergenic 45.0%
CAACGACAGCTAACTAACGT+TGG - chr8.4:72887005-72887024 None:intergenic 45.0%
CAACGTTAGTTAGCTGTCGT+TGG + chr8.4:72887003-72887022 MS.gene25134:intron 45.0%
CCAAAGTGGCTAACTACCAA+TGG - chr8.4:72887575-72887594 None:intergenic 45.0%
CTAACGTTGGAAAAGCAGAG+CGG - chr8.4:72886992-72887011 None:intergenic 45.0%
CTATAGGCTATAGCATCTGC+TGG + chr8.4:72884887-72884906 MS.gene25134:intron 45.0%
GGAACCCCAAAGAAGTAACA+AGG - chr8.4:72885770-72885789 None:intergenic 45.0%
GGGAATTATTAGGTTCCGGA+GGG + chr8.4:72886507-72886526 MS.gene25134:intron 45.0%
GTGCAGAGGAACTAGTTGAA+GGG + chr8.4:72886640-72886659 MS.gene25134:CDS 45.0%
TAGATGGCTCAATGCATCCA+TGG - chr8.4:72884639-72884658 None:intergenic 45.0%
TCTTGTACTCGGGAGATGAA+TGG - chr8.4:72885646-72885665 None:intergenic 45.0%
TGCAGAGGAACTAGTTGAAG+GGG + chr8.4:72886641-72886660 MS.gene25134:CDS 45.0%
! CCATTGGTAGTTAGCCACTT+TGG + chr8.4:72887572-72887591 MS.gene25134:CDS 45.0%
! GGGTCCTTGTTACTTCTTTG+GGG + chr8.4:72885763-72885782 MS.gene25134:CDS 45.0%
! TGGAAAGTGTGTTGGAGTAG+AGG - chr8.4:72885520-72885539 None:intergenic 45.0%
!! CAGCCTTCATTGGCTTTCAA+AGG + chr8.4:72885850-72885869 MS.gene25134:CDS 45.0%
!! TGTTACTTCTTTGGGGTTCC+TGG + chr8.4:72885770-72885789 MS.gene25134:CDS 45.0%
!!! ACTTTTTTATTTTTTAAAAA+AGG + chr8.4:72884961-72884980 MS.gene25134:intron 5.0%
AAAACCCGACACCGAGAGAA+GGG + chr8.4:72884771-72884790 MS.gene25134:intron 50.0%
ACTAGTTGAAGGGGGTTGCA+TGG + chr8.4:72886650-72886669 MS.gene25134:CDS 50.0%
AGCGGCAGCTAATTGCCTTT+GGG - chr8.4:72886974-72886993 None:intergenic 50.0%
CAGGTAGTGCACATGAATGG+AGG + chr8.4:72884471-72884490 MS.gene25134:CDS 50.0%
CGTGCAGAGGAACTAGTTGA+AGG + chr8.4:72886639-72886658 MS.gene25134:CDS 50.0%
CTCTCAACCAAGTGACCTCT+CGG - chr8.4:72884719-72884738 None:intergenic 50.0%
GAGAGCTATGGCTGAACCAT+TGG + chr8.4:72887556-72887575 MS.gene25134:CDS 50.0%
GCAGAGGAACTAGTTGAAGG+GGG + chr8.4:72886642-72886661 MS.gene25134:CDS 50.0%
GGGGAATTATTAGGTTCCGG+AGG + chr8.4:72886506-72886525 MS.gene25134:intron 50.0%
GTGCACATGAATGGAGGTGA+TGG + chr8.4:72884477-72884496 MS.gene25134:CDS 50.0%
TCTCAACCAAGTGACCTCTC+GGG - chr8.4:72884718-72884737 None:intergenic 50.0%
! CATATCCCTTCTCTCGGTGT+CGG - chr8.4:72884779-72884798 None:intergenic 50.0%
!! ATATCCCTTCTCTCGGTGTC+GGG - chr8.4:72884778-72884797 None:intergenic 50.0%
AAGTGACCTCTCGGGAGACT+GGG - chr8.4:72884710-72884729 None:intergenic 55.0%
CAAAACCCGACACCGAGAGA+AGG + chr8.4:72884770-72884789 MS.gene25134:intron 55.0%
GAGCGGCAGCTAATTGCCTT+TGG - chr8.4:72886975-72886994 None:intergenic 55.0%
GGGCAGGTAGTGCACATGAA+TGG + chr8.4:72884468-72884487 MS.gene25134:CDS 55.0%
AATTCGCCCAGTCTCCCGAG+AGG + chr8.4:72884701-72884720 MS.gene25134:intron 60.0%
CAAGTGACCTCTCGGGAGAC+TGG - chr8.4:72884711-72884730 None:intergenic 60.0%
CAGTCTCCCGAGAGGTCACT+TGG + chr8.4:72884709-72884728 MS.gene25134:intron 60.0%
TCATGTGCACTACCTGCCCC+AGG - chr8.4:72884467-72884486 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 72884459 72887709 72884459 ID=MS.gene25134
chr8.4 mRNA 72884459 72887709 72884459 ID=MS.gene25134.t1;Parent=MS.gene25134
chr8.4 exon 72884459 72884533 72884459 ID=MS.gene25134.t1.exon1;Parent=MS.gene25134.t1
chr8.4 CDS 72884459 72884533 72884459 ID=cds.MS.gene25134.t1;Parent=MS.gene25134.t1
chr8.4 exon 72885467 72885871 72885467 ID=MS.gene25134.t1.exon2;Parent=MS.gene25134.t1
chr8.4 CDS 72885467 72885871 72885467 ID=cds.MS.gene25134.t1;Parent=MS.gene25134.t1
chr8.4 exon 72886519 72886776 72886519 ID=MS.gene25134.t1.exon3;Parent=MS.gene25134.t1
chr8.4 CDS 72886519 72886776 72886519 ID=cds.MS.gene25134.t1;Parent=MS.gene25134.t1
chr8.4 exon 72887374 72887709 72887374 ID=MS.gene25134.t1.exon4;Parent=MS.gene25134.t1
chr8.4 CDS 72887374 72887709 72887374 ID=cds.MS.gene25134.t1;Parent=MS.gene25134.t1
Gene Sequence

>MS.gene25134

ATGGACCTGGGGCAGGTAGTGCACATGAATGGAGGTGATGGAGAAACAAGTTATGCAAAAAACTCATTTCATCAGGTATGTGTGTGTGTATAAGGTATTTTTATTATTTTTTTACGTTCGTATAATTTTTGGAAGATGAAGGCACATAACTCCATACCATTAAAGATAGTTCTTTTGCCATGGATGCATTGAGCCATCTATTCTGGTTATGAAAAGAAATACAAGCTCCTTTAAATTCGAGAAATTCGCCCAGTCTCCCGAGAGGTCACTTGGTTGAGAGTGTATCACATCAACCTCGAGAAACTAGTGTTCAAAACCCGACACCGAGAGAAGGGATATGAGAAATTTGATTTGGGATTTTGGGTATTGAATCTAAAGTTTAATTTTTTATTAATATAATTATCATTTGCTTTTTAAATTGAGATTGTCTATAGGCTATAGCATCTGCTGGTGATTGACTATTATGTTCAAAATACTTAATCCCACAATAATATCATTAAGAACTTTTTTATTTTTTAAAAAAGGCATATTCTACGATTGCATATTTAACGGTTTTAAAACGGTGCCATTGTTTTAAAAAATAAACTAAAAATCAATTTAGATATTATATTTTTTAAAATTTCTCAAAAGGAAAACTAAGAATGAAATAAAATAACATTAACTACCTTTTTGGTTTCTCATAAAATCATTTTAAACATTTTATTTTGGATTTATCGTACATATTGTAGTTAAATGCATAAAAATTATGCATAAATTAAAAATATTGATTAAAATTTTGTATCTAACACCTTAGATATTATTTAATCAATTAAGAAAGTTTCCAAAGAAAAAAAGTTTTTTATGATTTTTCTTATTAGACATTAAAAAATTAAAAGTGATTTTAAGAGAAAAAGAATGGTATTTAGTGTTATTTTAATTCATTCTTAGTTTACCTTCAAACAAGTTTTTTTAATTTTAAAAAAAATGTTTCTAAGTATTTTAAATATTTTCTTTATTATGTTGATATAGGGAAATGCAGTTTCTTGGACAAAGCCAATAAGAGATGAAGCTATAACTGGCCTCTACTCCAACACACTTTCCAGAAGTCTTGCAATTGCAGATTTAGGTTGTTCTTCTGGACCAAATACTTTGTTTGTGGTATCAGATATTATCATGGTTGTGGAGAAGCTTTGCCAACAATTGAACCATTCATCTCCCGAGTACAAGATATTTTTTAATGATGTTTCAGGAAATGACTTCAACAACATATTTAAGTCACTTGACAACTTTAAAGAGAAATTGCAAAATGAAATCAAAACTAAAATGGGTCCTTGTTACTTCTTTGGGGTTCCTGGTTCTTTCTATAACAGAGTTTTTCCTGATCAAAGTTTGCATTTCATTCATTCCTCTTACAGCCTTCATTGGCTTTCAAAGGTTAATATCGTCACCTCATTTTTTATATTGTGTTTCTTGTATATTTTTGTGTGTCGTTGATTAATTTATACCCTAGGAAACACCTTGTATTTTTTTGCAGGGTTAGAATAAACTTATTTGGTCTTATATGATAAAATGCAAGTATTTTAGTATATTTTGAGAAGAGTATTAGTGAGTAACTTATAAAATGTTTAAAAGAGTTGGCAGAGTTTCCCCTTGTTTTCATTAATGCTTCTAGGTATAAATTATTTGTCATAAGTTTTTTTTTTTTTTGAGCAAGTCATAAGTTGTTTTTAGCTCATGCATATACTTTTCTTCTTATATAATTTTGTATTTGATTGTACAAAAAAAAAAAAAAAGTTCAAATGTGATAAGTGTTTATTGGATAAGCAATTTAATTAAATTGTATATCTAACCACATCTTCATGTACACACACTGAAATATCCATATATGCATTTACACACACACACACACACAGACACACACACACACACACACACACACACAGATATATATATATATATATATATATATATATATATATATAGATTATTTATTTCATTTTTTGAAAAATCTATTCTATAGATGTAAACATGTACATACAAATATATAATTGATTTTATTTGTTAATATGGGGAATTATTAGGTTCCGGAGGGTATAGAGAACAATAAGACCAACATTTACATCAACTACACAAGTCCCTCAAATGTTGTTAAAGCATACTATGATCAATTTAAAAGAGACTTCTCGGTTTTTCTCAAGTATCGTGCAGAGGAACTAGTTGAAGGGGGTTGCATGGTTCTAACAATGAGTGGAAGAAGAAATGAAGATCCATGTGACATAAAATATTGTTGCTACTATTGGGAGCTTTTAGCTGCTGTTCTTAATGGCATGGTCTTAGAGGTACGTATAAAAGCATCTATAAATGAAAAACAAGTCTTTTTATACATAATAAATAACATAAATATCTTGTAATATACCCAACTTCCTATTTGTACATATTCACCAAGTTGTTTTATTTTTCATTCCATAAAATGTAGGTAATCCTAAAAAGTGAACAGTTGCTCATCTCATTTTTTAAATTGCTCAAAAACATACCCAAAGGCAATTAGCTGCCGCTCTGCTTTTCCAACGTTAGTTAGCTGTCGTTGGACACTTTTAAAATCGATTAAACCGATTTAAAAGGTGATTGAACCACTTTAGTAAGTGTCCAACAACATTTAACTATTGCTGGAAAATCTGAGCCACAATTAATTGCCGTTGAGTATGTTTTTGAACAATTTTAAAAGCGAGATGAGCAATTTCTTAAAGTTGCTCACTTTAAAAAAAAATCCTAAAAAATTACAATCATTGTTGTCTTAATTTAGGGTCGGTTTCTTTGATTAGTTTTAGGGATTTTTATACGAAGTAGAAGTTTATTTGTATTTTTTTTTTTTGACAAAAGAAGTTTATTTGTGTTTATCTATATAATAATATGAATATGATTTTTGTATGCAACAGGGGATTATAAAGGAAGATCAAGTGAATACTTTTAATGTCCCTCAATATTATCCATCTCCATATGAAGTAGAGTTGGAAGTTCTCAATGAAGGATCATTTGCCATCAATCGTTTGGAGTTGTTTGAAGCGTATGTAGATGGTTCTAATCATCATGAATATGTATATAATGTTGCACGATTAATGAGAGCTATGGCTGAACCATTGGTAGTTAGCCACTTTGGTGAAGATATAATAGAAGAGATTTTTAGCCGTCACCAAAAAATCATAATTGATAAATTACCCAAGGAGAAACTGAAGGCCATTAATGTTATCATATCATTGACTAGAAAAGCATGA

Protein sequence

>MS.gene25134.t1

MDLGQVVHMNGGDGETSYAKNSFHQGNAVSWTKPIRDEAITGLYSNTLSRSLAIADLGCSSGPNTLFVVSDIIMVVEKLCQQLNHSSPEYKIFFNDVSGNDFNNIFKSLDNFKEKLQNEIKTKMGPCYFFGVPGSFYNRVFPDQSLHFIHSSYSLHWLSKVPEGIENNKTNIYINYTSPSNVVKAYYDQFKRDFSVFLKYRAEELVEGGCMVLTMSGRRNEDPCDIKYCCYYWELLAAVLNGMVLEGIIKEDQVNTFNVPQYYPSPYEVELEVLNEGSFAINRLELFEAYVDGSNHHEYVYNVARLMRAMAEPLVVSHFGEDIIEEIFSRHQKIIIDKLPKEKLKAINVIISLTRKA