Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25721.t1 | XP_003601480.1 | 98.6 | 516 | 2 | 3 | 1 | 513 | 1 | 514 | 3.70E-281 | 976.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25721.t1 | P52417 | 96.1 | 512 | 18 | 1 | 4 | 513 | 1 | 512 | 3.1e-276 | 951.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25721.t1 | G7J834 | 98.6 | 516 | 2 | 3 | 1 | 513 | 1 | 514 | 2.7e-281 | 976.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene25721 | 0.840632 | 7.73E-58 | -1.69E-46 |
| MS.gene049491 | MS.gene25721 | 0.80414 | 2.49E-49 | -1.69E-46 |
| MS.gene050099 | MS.gene25721 | 0.800355 | 1.50E-48 | -1.69E-46 |
| MS.gene050301 | MS.gene25721 | 0.872655 | 2.69E-67 | -1.69E-46 |
| MS.gene050432 | MS.gene25721 | 0.819362 | 1.21E-52 | -1.69E-46 |
| MS.gene05101 | MS.gene25721 | 0.819102 | 1.39E-52 | -1.69E-46 |
| MS.gene051255 | MS.gene25721 | 0.808445 | 3.09E-50 | -1.69E-46 |
| MS.gene051360 | MS.gene25721 | 0.861428 | 1.03E-63 | -1.69E-46 |
| MS.gene052207 | MS.gene25721 | 0.857639 | 1.42E-62 | -1.69E-46 |
| MS.gene052287 | MS.gene25721 | 0.866904 | 2.03E-65 | -1.69E-46 |
| MS.gene052326 | MS.gene25721 | 0.817587 | 3.05E-52 | -1.69E-46 |
| MS.gene053209 | MS.gene25721 | 0.823702 | 1.20E-53 | -1.69E-46 |
| MS.gene054473 | MS.gene25721 | 0.815082 | 1.11E-51 | -1.69E-46 |
| MS.gene05455 | MS.gene25721 | 0.835356 | 1.76E-56 | -1.69E-46 |
| MS.gene055277 | MS.gene25721 | 0.818269 | 2.14E-52 | -1.69E-46 |
| MS.gene055390 | MS.gene25721 | 0.842172 | 3.04E-58 | -1.69E-46 |
| MS.gene055422 | MS.gene25721 | 0.810772 | 9.76E-51 | -1.69E-46 |
| MS.gene055428 | MS.gene25721 | 0.820465 | 6.76E-53 | -1.69E-46 |
| MS.gene055633 | MS.gene25721 | 0.83416 | 3.52E-56 | -1.69E-46 |
| MS.gene056410 | MS.gene25721 | 0.816777 | 4.64E-52 | -1.69E-46 |
| MS.gene056931 | MS.gene25721 | 0.860758 | 1.65E-63 | -1.69E-46 |
| MS.gene056933 | MS.gene25721 | 0.862315 | 5.53E-64 | -1.69E-46 |
| MS.gene056935 | MS.gene25721 | 0.855437 | 6.31E-62 | -1.69E-46 |
| MS.gene057450 | MS.gene25721 | 0.800194 | 1.62E-48 | -1.69E-46 |
| MS.gene057469 | MS.gene25721 | 0.838311 | 3.10E-57 | -1.69E-46 |
| MS.gene058002 | MS.gene25721 | 0.810476 | 1.13E-50 | -1.69E-46 |
| MS.gene05811 | MS.gene25721 | 0.848237 | 6.97E-60 | -1.69E-46 |
| MS.gene05842 | MS.gene25721 | 0.828396 | 9.20E-55 | -1.69E-46 |
| MS.gene058660 | MS.gene25721 | 0.822466 | 2.33E-53 | -1.69E-46 |
| MS.gene05907 | MS.gene25721 | 0.827482 | 1.53E-54 | -1.69E-46 |
| MS.gene059518 | MS.gene25721 | 0.811484 | 6.84E-51 | -1.69E-46 |
| MS.gene059530 | MS.gene25721 | 0.8011 | 1.06E-48 | -1.69E-46 |
| MS.gene059597 | MS.gene25721 | 0.806744 | 7.09E-50 | -1.69E-46 |
| MS.gene059676 | MS.gene25721 | 0.822443 | 2.36E-53 | -1.69E-46 |
| MS.gene059692 | MS.gene25721 | 0.803084 | 4.13E-49 | -1.69E-46 |
| MS.gene059695 | MS.gene25721 | 0.80412 | 2.52E-49 | -1.69E-46 |
| MS.gene060356 | MS.gene25721 | 0.800409 | 1.46E-48 | -1.69E-46 |
| MS.gene060559 | MS.gene25721 | 0.868698 | 5.38E-66 | -1.69E-46 |
| MS.gene060837 | MS.gene25721 | 0.81782 | 2.70E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25721.t1 | MTR_3g082150 | 98.643 | 516 | 2 | 3 | 1 | 513 | 1 | 514 | 0.0 | 1036 |
| MS.gene25721.t1 | MTR_5g097010 | 90.097 | 515 | 49 | 2 | 1 | 513 | 1 | 515 | 0.0 | 913 |
| MS.gene25721.t1 | MTR_4g131760 | 53.968 | 504 | 208 | 8 | 27 | 513 | 25 | 521 | 0.0 | 543 |
| MS.gene25721.t1 | MTR_7g111020 | 52.031 | 517 | 222 | 11 | 11 | 513 | 24 | 528 | 0.0 | 531 |
| MS.gene25721.t1 | MTR_3g112070 | 55.195 | 462 | 186 | 6 | 57 | 513 | 85 | 530 | 0.0 | 522 |
| MS.gene25721.t1 | MTR_4g070430 | 50.415 | 482 | 223 | 8 | 45 | 513 | 50 | 528 | 1.81e-169 | 489 |
| MS.gene25721.t1 | MTR_3g116860 | 55.936 | 438 | 185 | 6 | 81 | 513 | 84 | 518 | 3.53e-169 | 488 |
| MS.gene25721.t1 | MTR_7g111020 | 56.000 | 400 | 165 | 8 | 121 | 513 | 1 | 396 | 4.46e-161 | 463 |
| MS.gene25721.t1 | MTR_4g070430 | 49.417 | 429 | 201 | 8 | 45 | 460 | 50 | 475 | 5.09e-147 | 430 |
| MS.gene25721.t1 | MTR_7g104380 | 83.019 | 53 | 9 | 0 | 363 | 415 | 4 | 56 | 1.49e-23 | 99.4 |
| MS.gene25721.t1 | MTR_6g014000 | 87.273 | 55 | 7 | 0 | 417 | 471 | 266 | 320 | 2.43e-22 | 100 |
| MS.gene25721.t1 | MTR_3g056715 | 65.116 | 43 | 15 | 0 | 371 | 413 | 28 | 70 | 5.98e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25721.t1 | AT5G48300 | 87.308 | 520 | 59 | 4 | 1 | 513 | 1 | 520 | 0.0 | 897 |
| MS.gene25721.t1 | AT5G19220 | 52.724 | 514 | 226 | 8 | 14 | 513 | 12 | 522 | 0.0 | 547 |
| MS.gene25721.t1 | AT1G27680 | 57.306 | 438 | 180 | 4 | 81 | 513 | 83 | 518 | 0.0 | 532 |
| MS.gene25721.t1 | AT4G39210 | 49.275 | 483 | 226 | 7 | 45 | 513 | 44 | 521 | 1.44e-168 | 487 |
| MS.gene25721.t1 | AT4G39210 | 49.275 | 483 | 226 | 7 | 45 | 513 | 44 | 521 | 1.44e-168 | 487 |
| MS.gene25721.t1 | AT2G21590 | 47.438 | 527 | 244 | 9 | 14 | 513 | 3 | 523 | 1.40e-166 | 482 |
| MS.gene25721.t1 | AT2G21590 | 47.438 | 527 | 244 | 9 | 14 | 513 | 3 | 523 | 1.40e-166 | 482 |
| MS.gene25721.t1 | AT2G21590 | 47.438 | 527 | 244 | 9 | 14 | 513 | 3 | 523 | 1.40e-166 | 482 |
| MS.gene25721.t1 | AT2G21590 | 47.438 | 527 | 244 | 9 | 14 | 513 | 3 | 523 | 1.40e-166 | 482 |
| MS.gene25721.t1 | AT2G21590 | 47.438 | 527 | 244 | 9 | 14 | 513 | 3 | 523 | 1.40e-166 | 482 |
| MS.gene25721.t1 | AT2G21590 | 47.438 | 527 | 244 | 9 | 14 | 513 | 3 | 523 | 1.40e-166 | 482 |
| MS.gene25721.t1 | AT2G21590 | 47.438 | 527 | 244 | 9 | 14 | 513 | 3 | 523 | 1.40e-166 | 482 |
| MS.gene25721.t1 | AT1G05610 | 45.708 | 466 | 234 | 6 | 50 | 513 | 28 | 476 | 4.89e-144 | 422 |
| MS.gene25721.t1 | AT1G05610 | 45.940 | 468 | 236 | 6 | 50 | 513 | 28 | 482 | 7.57e-144 | 422 |
Find 0 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTAATCAAAGTTTACA+TGG | - | 24220:81691-81710 | MS.gene25721:CDS | 15.0% |
| !! | CAAAAAAAGAACATATTATA+TGG | + | 24220:80377-80396 | None:intergenic | 15.0% |
| !!! | TGATTTTCTCAAATTATTAT+CGG | + | 24220:79293-79312 | None:intergenic | 15.0% |
| !! | AACAACAGAAAACATATATA+AGG | + | 24220:80002-80021 | None:intergenic | 20.0% |
| !! | AACTATATTTGAATTTGGTA+GGG | - | 24220:79626-79645 | MS.gene25721:CDS | 20.0% |
| !! | ACAAATTTGTACATATTTCT+TGG | - | 24220:81124-81143 | MS.gene25721:intron | 20.0% |
| !! | TTAGGAACTATATTTGAATT+TGG | - | 24220:79621-79640 | MS.gene25721:CDS | 20.0% |
| !!! | AAGGTTATTTCATAAAAAGT+GGG | - | 24220:81799-81818 | MS.gene25721:CDS | 20.0% |
| !!! | AATTTGAGTTTGTTGATAAT+GGG | - | 24220:78949-78968 | MS.gene25721:CDS | 20.0% |
| !!! | AGGGAAAAATATGAATTTTT+TGG | + | 24220:81082-81101 | None:intergenic | 20.0% |
| !!! | GTAATGTAATGATTTTATGA+TGG | - | 24220:79661-79680 | MS.gene25721:CDS | 20.0% |
| !!! | TAATTTGAGTTTGTTGATAA+TGG | - | 24220:78948-78967 | MS.gene25721:CDS | 20.0% |
| !!! | TATGAGTTTTTGACATAAAA+TGG | - | 24220:79030-79049 | MS.gene25721:intron | 20.0% |
| !!! | TGTTATGACTTTTTTGTATT+AGG | - | 24220:80436-80455 | MS.gene25721:intron | 20.0% |
| !!! | TTTATTTGAGTTTTTGTATG+TGG | - | 24220:79099-79118 | MS.gene25721:intron | 20.0% |
| ! | AACAAACATTAAACATAAGC+TGG | + | 24220:80921-80940 | None:intergenic | 25.0% |
| ! | ACATTAAGTTACCTAAAATC+TGG | + | 24220:80845-80864 | None:intergenic | 25.0% |
| ! | ACTATATTTGAATTTGGTAG+GGG | - | 24220:79627-79646 | MS.gene25721:CDS | 25.0% |
| ! | ACTATCACACTAATTTGAAA+TGG | - | 24220:79218-79237 | MS.gene25721:intron | 25.0% |
| ! | AGCTTATGTTTAATGTTTGT+TGG | - | 24220:80920-80939 | MS.gene25721:intron | 25.0% |
| ! | ATTCACACAATATTATCATG+TGG | - | 24220:79495-79514 | MS.gene25721:intron | 25.0% |
| ! | CAAGAATTCTCATATCAAAA+GGG | - | 24220:81480-81499 | MS.gene25721:intron | 25.0% |
| ! | CAGTAGGATGAATAAATAAA+AGG | + | 24220:80871-80890 | None:intergenic | 25.0% |
| ! | GAACTATATTTGAATTTGGT+AGG | - | 24220:79625-79644 | MS.gene25721:CDS | 25.0% |
| ! | GCTTATGTTTAATGTTTGTT+GGG | - | 24220:80921-80940 | MS.gene25721:intron | 25.0% |
| ! | GGAACAAAATATTGAAAACA+AGG | + | 24220:81196-81215 | None:intergenic | 25.0% |
| ! | GTTAAAATAAAACAGACAGT+AGG | + | 24220:80887-80906 | None:intergenic | 25.0% |
| ! | TAATAGTTCTTGCTTTGTAT+TGG | + | 24220:79557-79576 | None:intergenic | 25.0% |
| ! | TCTTTGATATGTTACTGTTT+AGG | + | 24220:79822-79841 | None:intergenic | 25.0% |
| ! | TGTCATATTGTGAAGTTAAT+AGG | - | 24220:81337-81356 | MS.gene25721:intron | 25.0% |
| ! | TTATTTATACGATGGATACT+GGG | - | 24220:80757-80776 | MS.gene25721:intron | 25.0% |
| ! | TTCACACAATATTATCATGT+GGG | - | 24220:79496-79515 | MS.gene25721:intron | 25.0% |
| ! | TTGACATTATCAATCATATG+AGG | + | 24220:79176-79195 | None:intergenic | 25.0% |
| !! | GAAGGTTATTTCATAAAAAG+TGG | - | 24220:81798-81817 | MS.gene25721:CDS | 25.0% |
| !! | TGATATTGTAGTGTGTTTTT+GGG | - | 24220:78978-78997 | MS.gene25721:CDS | 25.0% |
| !! | TTGATATTGTAGTGTGTTTT+TGG | - | 24220:78977-78996 | MS.gene25721:CDS | 25.0% |
| !!! | GATTTTAGGTAACTTAATGT+TGG | - | 24220:80845-80864 | MS.gene25721:intron | 25.0% |
| !!! | TAGGTTGATACTACTATTTT+GGG | - | 24220:80455-80474 | MS.gene25721:CDS | 25.0% |
| !!! | TTAGGTTGATACTACTATTT+TGG | - | 24220:80454-80473 | MS.gene25721:CDS | 25.0% |
| !!! | TTCAATATTGGTTTTCTGAT+TGG | - | 24220:81391-81410 | MS.gene25721:intron | 25.0% |
| !!! | TTCTCAATGTTTTAGCAATT+GGG | - | 24220:78919-78938 | MS.gene25721:CDS | 25.0% |
| !!! | TTTCTCAATGTTTTAGCAAT+TGG | - | 24220:78918-78937 | MS.gene25721:CDS | 25.0% |
| AAAATTCATCATTCTGTCGT+TGG | - | 24220:81226-81245 | MS.gene25721:intron | 30.0% | |
| AATGCCTTATATTGCTAGTA+TGG | - | 24220:80502-80521 | MS.gene25721:CDS | 30.0% | |
| AGAGATTTATACAAGCACAT+AGG | - | 24220:80201-80220 | MS.gene25721:CDS | 30.0% | |
| AGTGCAAATAATGTCATGAT+TGG | + | 24220:79201-79220 | None:intergenic | 30.0% | |
| ATACCCATACTAGCAATATA+AGG | + | 24220:80509-80528 | None:intergenic | 30.0% | |
| ATATAAGGTTGCTTATTACC+TGG | + | 24220:79987-80006 | None:intergenic | 30.0% | |
| ATGCCTTATATTGCTAGTAT+GGG | - | 24220:80503-80522 | MS.gene25721:CDS | 30.0% | |
| ATTGACAAGAATGCTAGAAT+TGG | - | 24220:81508-81527 | MS.gene25721:intron | 30.0% | |
| ATTGAGGACACATTGTTAAT+GGG | - | 24220:81280-81299 | MS.gene25721:intron | 30.0% | |
| CATAATCCATTCGATACAAA+TGG | + | 24220:80181-80200 | None:intergenic | 30.0% | |
| CTAATGAAGATTGATGAAGA+GGG | - | 24220:80290-80309 | MS.gene25721:CDS | 30.0% | |
| CTTATTTATACGATGGATAC+TGG | - | 24220:80756-80775 | MS.gene25721:intron | 30.0% | |
| CTTTGTATTGAACAGATAGA+AGG | + | 24220:80650-80669 | None:intergenic | 30.0% | |
| GAGATTTATACAAGCACATA+GGG | - | 24220:80202-80221 | MS.gene25721:CDS | 30.0% | |
| GCAAGAATTCTCATATCAAA+AGG | - | 24220:81479-81498 | MS.gene25721:intron | 30.0% | |
| GCTTTCTATAATGCAAATCT+GGG | - | 24220:80800-80819 | MS.gene25721:intron | 30.0% | |
| GTAAGATGTTATGTGTTTGA+TGG | - | 24220:79066-79085 | MS.gene25721:intron | 30.0% | |
| TAATGAAGATTGATGAAGAG+GGG | - | 24220:80291-80310 | MS.gene25721:CDS | 30.0% | |
| TAGTGAGAGATAGAGAAAAT+GGG | - | 24220:78857-78876 | MS.gene25721:intron | 30.0% | |
| TATTGAGGACACATTGTTAA+TGG | - | 24220:81279-81298 | MS.gene25721:intron | 30.0% | |
| TCTAATGAAGATTGATGAAG+AGG | - | 24220:80289-80308 | MS.gene25721:CDS | 30.0% | |
| TCTCAAATTATTATCGGTGT+CGG | + | 24220:79287-79306 | None:intergenic | 30.0% | |
| TGAATGCTTTCACTATTACA+GGG | - | 24220:80077-80096 | MS.gene25721:CDS | 30.0% | |
| TTGAATGCTTTCACTATTAC+AGG | - | 24220:80076-80095 | MS.gene25721:CDS | 30.0% | |
| TTTAGATGATGAAGAAGATG+AGG | + | 24220:78609-78628 | None:intergenic | 30.0% | |
| TTTATTGCTATGATCACTTG+TGG | - | 24220:80026-80045 | MS.gene25721:intron | 30.0% | |
| ! | ATGTTATGTGTTTGATGGAT+TGG | - | 24220:79071-79090 | MS.gene25721:intron | 30.0% |
| ! | TTTAATGTTTGTTGGGACAT+TGG | - | 24220:80928-80947 | MS.gene25721:intron | 30.0% |
| !! | GGAAGTACTAACTTCAATAT+TGG | - | 24220:81379-81398 | MS.gene25721:intron | 30.0% |
| !! | TGTTATGTGTTTGATGGATT+GGG | - | 24220:79072-79091 | MS.gene25721:intron | 30.0% |
| !! | TTGGAATATTTAGTTCTTGC+TGG | - | 24220:80152-80171 | MS.gene25721:CDS | 30.0% |
| !! | TTTGAGTTTTTGTATGTGGT+TGG | - | 24220:79103-79122 | MS.gene25721:intron | 30.0% |
| ACATAAGCTGGCTGTTATTA+TGG | + | 24220:80909-80928 | None:intergenic | 35.0% | |
| ACTCAATTGCACAAACAATG+AGG | + | 24220:79444-79463 | None:intergenic | 35.0% | |
| AGTGAGAGATAGAGAAAATG+GGG | - | 24220:78858-78877 | MS.gene25721:intron | 35.0% | |
| AGTGTGCTTGGTATTATACT+TGG | - | 24220:79691-79710 | MS.gene25721:intron | 35.0% | |
| AGTTACCTAAAATCTGGTAC+TGG | + | 24220:80839-80858 | None:intergenic | 35.0% | |
| AGTTGAAAGCTATGAAAGTG+AGG | - | 24220:80351-80370 | MS.gene25721:intron | 35.0% | |
| ATACTAGTAACGATGGAGTA+GGG | + | 24220:81101-81120 | None:intergenic | 35.0% | |
| ATGCCTAACACAAAAAATGC+AGG | + | 24220:79596-79615 | None:intergenic | 35.0% | |
| ATGCTGAATTGAATTGTGTG+AGG | + | 24220:79852-79871 | None:intergenic | 35.0% | |
| ATGGGTGGTTACAAAAATGA+AGG | - | 24220:79910-79929 | MS.gene25721:CDS | 35.0% | |
| ATTCTTAAGGTAGATCAGAC+TGG | - | 24220:79001-79020 | MS.gene25721:intron | 35.0% | |
| CAAAAATGAAGGTTTCGTTG+AGG | - | 24220:79921-79940 | MS.gene25721:CDS | 35.0% | |
| CATATATGTCAATGTCGTGA+AGG | - | 24220:79329-79348 | MS.gene25721:intron | 35.0% | |
| GAATTCTTGCCAATACCAAT+CGG | + | 24220:81469-81488 | None:intergenic | 35.0% | |
| GATATCACTGACAGTGTTAT+TGG | - | 24220:81027-81046 | MS.gene25721:intron | 35.0% | |
| GCAAGAAGAAGAGAAAACTA+TGG | - | 24220:78695-78714 | MS.gene25721:intron | 35.0% | |
| GGCTTTCTATAATGCAAATC+TGG | - | 24220:80799-80818 | MS.gene25721:intron | 35.0% | |
| GTAGTGAGAGATAGAGAAAA+TGG | - | 24220:78856-78875 | MS.gene25721:intron | 35.0% | |
| GTGCAAGCTTATTTATACGA+TGG | - | 24220:80749-80768 | MS.gene25721:intron | 35.0% | |
| TGCCTAACACAAAAAATGCA+GGG | + | 24220:79595-79614 | None:intergenic | 35.0% | |
| TGCTTGGTATTATACTTGGA+GGG | - | 24220:79695-79714 | MS.gene25721:intron | 35.0% | |
| TGGTCAAAATCTATGAAGCA+CGG | - | 24220:79238-79257 | MS.gene25721:intron | 35.0% | |
| TGGTGAAGGATGTGTAATTA+AGG | - | 24220:81047-81066 | MS.gene25721:intron | 35.0% | |
| TTGAGGACACATTGTTAATG+GGG | - | 24220:81281-81300 | MS.gene25721:intron | 35.0% | |
| TTGTGTTAGGCATGTTTGTT+AGG | - | 24220:79603-79622 | MS.gene25721:CDS | 35.0% | |
| TTTATCCATTGACCAAGAAG+CGG | - | 24220:79734-79753 | MS.gene25721:intron | 35.0% | |
| ! | AAAAGCCAGTACCAGATTTT+AGG | - | 24220:80831-80850 | MS.gene25721:intron | 35.0% |
| ! | AAGACAAGTCTGTGAGTTTT+TGG | + | 24220:78762-78781 | None:intergenic | 35.0% |
| ! | ATCAGAAGGTGCAATTATTG+AGG | - | 24220:81264-81283 | MS.gene25721:intron | 35.0% |
| ! | GCAATATTTATGGCTTTTCG+AGG | - | 24220:80118-80137 | MS.gene25721:CDS | 35.0% |
| ! | TGATGAATTTTGCAGTTCTG+TGG | + | 24220:81217-81236 | None:intergenic | 35.0% |
| !! | GGAATTGACTTTAGTTTGAC+TGG | - | 24220:81358-81377 | MS.gene25721:intron | 35.0% |
| !! | TGCATTTTGAGTATGAAGCA+AGG | + | 24220:79408-79427 | None:intergenic | 35.0% |
| !!! | AAAATCTGGTACTGGCTTTT+TGG | + | 24220:80831-80850 | None:intergenic | 35.0% |
| !!! | AACCCTGCATTTTTTGTGTT+AGG | - | 24220:79590-79609 | MS.gene25721:CDS | 35.0% |
| !!! | GTGTGTTTTTGGGATTCTTA+AGG | - | 24220:78988-79007 | MS.gene25721:intron | 35.0% |
| AATGGGGGCAGATTATTATG+AGG | - | 24220:81297-81316 | MS.gene25721:intron | 40.0% | |
| ACGTATTTGCGAATCTGCTT+AGG | - | 24220:80727-80746 | MS.gene25721:intron | 40.0% | |
| AGAGAACAATGCACTTAGAC+AGG | + | 24220:81597-81616 | None:intergenic | 40.0% | |
| ATGCGGTGAGGCAATATTTA+TGG | - | 24220:80108-80127 | MS.gene25721:CDS | 40.0% | |
| CATACTAGTAACGATGGAGT+AGG | + | 24220:81102-81121 | None:intergenic | 40.0% | |
| CATGAATGTGGAGCAAGATA+TGG | + | 24220:81627-81646 | None:intergenic | 40.0% | |
| CTACTCCATCGTTACTAGTA+TGG | - | 24220:81100-81119 | MS.gene25721:intron | 40.0% | |
| CTTATTACCTGGAACCAGTT+TGG | + | 24220:79976-79995 | None:intergenic | 40.0% | |
| CTTGGTATTATACTTGGAGG+GGG | - | 24220:79697-79716 | MS.gene25721:intron | 40.0% | |
| GAAGATGAGGAAGAAGAAGA+AGG | + | 24220:78596-78615 | None:intergenic | 40.0% | |
| GCTTGGTATTATACTTGGAG+GGG | - | 24220:79696-79715 | MS.gene25721:intron | 40.0% | |
| GTGCTTGGTATTATACTTGG+AGG | - | 24220:79694-79713 | MS.gene25721:intron | 40.0% | |
| TAGAATTGGAGACGATGTGA+AGG | - | 24220:81522-81541 | MS.gene25721:intron | 40.0% | |
| TATGAAGCAAGGACATTCCT+TGG | + | 24220:79397-79416 | None:intergenic | 40.0% | |
| TCAATTCAGCATCCTTGAAC+AGG | - | 24220:79860-79879 | MS.gene25721:CDS | 40.0% | |
| TCAGCATCAAGCATCTTAGA+TGG | + | 24220:81009-81028 | None:intergenic | 40.0% | |
| TCTTACTCTCATCCCAAGTT+CGG | + | 24220:80624-80643 | None:intergenic | 40.0% | |
| TCTTCTTCTTGCTGAAACTG+TGG | + | 24220:78687-78706 | None:intergenic | 40.0% | |
| TGAGGACACATTGTTAATGG+GGG | - | 24220:81282-81301 | MS.gene25721:intron | 40.0% | |
| TGGGATTGTCACAGTAATCA+AGG | - | 24220:81818-81837 | MS.gene25721:CDS | 40.0% | |
| TGGTGACCATTTGTATCGAA+TGG | - | 24220:80172-80191 | MS.gene25721:CDS | 40.0% | |
| TGTTTAGGCAGTTGCTAACA+GGG | + | 24220:79807-79826 | None:intergenic | 40.0% | |
| TTATCCATTGACCAAGAAGC+GGG | - | 24220:79735-79754 | MS.gene25721:intron | 40.0% | |
| TTCCTCTTGGAGCAAACTAT+AGG | - | 24220:79770-79789 | MS.gene25721:intron | 40.0% | |
| TTGGAATCAGAAACAGCCTT+GGG | + | 24220:78743-78762 | None:intergenic | 40.0% | |
| TTGTGCCATACTAGTAACGA+TGG | + | 24220:81108-81127 | None:intergenic | 40.0% | |
| ! | ACTGACAGTGTTATTGGTGA+AGG | - | 24220:81033-81052 | MS.gene25721:intron | 40.0% |
| ! | AGATGCTGATAGGAGGTTTT+TGG | - | 24220:81426-81445 | MS.gene25721:intron | 40.0% |
| ! | CAATATTATCATGTGGGCTG+TGG | - | 24220:79502-79521 | MS.gene25721:intron | 40.0% |
| ! | GCTTTCAACTGTTCTCCTTT+TGG | + | 24220:80341-80360 | None:intergenic | 40.0% |
| ! | TTTGGAATCAGAAACAGCCT+TGG | + | 24220:78744-78763 | None:intergenic | 40.0% |
| !! | TTTCGAGGAGCACAATGTTT+TGG | - | 24220:80133-80152 | MS.gene25721:CDS | 40.0% |
| ACAATGTGCAAGAAGCTGCA+AGG | - | 24220:81769-81788 | MS.gene25721:CDS | 45.0% | |
| ACATTCATGCTGGAAGAGTG+AGG | - | 24220:81638-81657 | MS.gene25721:CDS | 45.0% | |
| AGAGTCCTGAGAATCCAAAC+TGG | - | 24220:79959-79978 | MS.gene25721:intron | 45.0% | |
| AGCCTTGGGAGAAACAATGA+AGG | + | 24220:78729-78748 | None:intergenic | 45.0% | |
| ATCCATTGGCAATGCAGCAA+CGG | + | 24220:80246-80265 | None:intergenic | 45.0% | |
| ATCTTGCTCCACATTCATGC+TGG | - | 24220:81628-81647 | MS.gene25721:intron | 45.0% | |
| ATGGCTTCAATGGCTTCGAT+CGG | - | 24220:78557-78576 | MS.gene25721:CDS | 45.0% | |
| ATTACAGGGAACTGCAGATG+CGG | - | 24220:80091-80110 | MS.gene25721:CDS | 45.0% | |
| CAACTAACTCTGCTAGCATC+TGG | + | 24220:78788-78807 | None:intergenic | 45.0% | |
| CAATGTGCAAGAAGCTGCAA+GGG | - | 24220:81770-81789 | MS.gene25721:CDS | 45.0% | |
| CATTCATGCTGGAAGAGTGA+GGG | - | 24220:81639-81658 | MS.gene25721:CDS | 45.0% | |
| CTGCGATCTTGCATATCAGA+AGG | - | 24220:81250-81269 | MS.gene25721:intron | 45.0% | |
| CTGTTTAGGCAGTTGCTAAC+AGG | + | 24220:79808-79827 | None:intergenic | 45.0% | |
| CTTCATTAGACCGAATGCAG+TGG | + | 24220:80279-80298 | None:intergenic | 45.0% | |
| GAATGAGAGGTTACGTGCAA+TGG | + | 24220:78633-78652 | None:intergenic | 45.0% | |
| GAATTTGCCGAGAAGCCAAA+AGG | - | 24220:80323-80342 | MS.gene25721:intron | 45.0% | |
| GATGGATACTGGGAAGACAT+CGG | - | 24220:80767-80786 | MS.gene25721:intron | 45.0% | |
| GCAAGGACATTCCTTGGATT+AGG | + | 24220:79391-79410 | None:intergenic | 45.0% | |
| GCATCAAGCATCTTAGATGG+AGG | + | 24220:81006-81025 | None:intergenic | 45.0% | |
| GCCTTGGGAGAAACAATGAA+GGG | + | 24220:78728-78747 | None:intergenic | 45.0% | |
| GCTGTGATGAAGTGAATGAG+AGG | + | 24220:78646-78665 | None:intergenic | 45.0% | |
| GGAAGACATCGGTACAATTG+AGG | - | 24220:80778-80797 | MS.gene25721:intron | 45.0% | |
| TCACTCTTCCAGCATGAATG+TGG | + | 24220:81639-81658 | None:intergenic | 45.0% | |
| TGGAACCAGTTTGGATTCTC+AGG | + | 24220:79967-79986 | None:intergenic | 45.0% | |
| TTAGATGGAGGCAAATACCG+AGG | + | 24220:80994-81013 | None:intergenic | 45.0% | |
| TTCACTTCATCACAGCTCTG+TGG | - | 24220:78650-78669 | MS.gene25721:CDS | 45.0% | |
| TTCGGGAGTGAAGTTATTCC+TGG | - | 24220:80593-80612 | MS.gene25721:CDS | 45.0% | |
| TTTCCTGGTGCAAACGACTT+CGG | - | 24220:80575-80594 | MS.gene25721:CDS | 45.0% | |
| ! | GATGGTTTTCAGAGTGTGCT+TGG | - | 24220:79679-79698 | MS.gene25721:intron | 45.0% |
| ! | TGAGAATCCAAACTGGTTCC+AGG | - | 24220:79966-79985 | MS.gene25721:intron | 45.0% |
| ! | TGTCAATGTCGTGAAGGTGT+CGG | - | 24220:79335-79354 | MS.gene25721:intron | 45.0% |
| !! | AAGGATGCATTGATTCCGAG+TGG | - | 24220:81837-81856 | MS.gene25721:CDS | 45.0% |
| !! | AGCCTATAGTTTGCTCCAAG+AGG | + | 24220:79775-79794 | None:intergenic | 45.0% |
| !!! | AGGAGGTTTTTGGCTGCTAA+AGG | - | 24220:81436-81455 | MS.gene25721:intron | 45.0% |
| !!! | CTGTTCTCCTTTTGGCTTCT+CGG | + | 24220:80333-80352 | None:intergenic | 45.0% |
| ACAGGGACACACCTAATCCA+AGG | - | 24220:79377-79396 | MS.gene25721:CDS | 50.0% | |
| ATGGAGGCAAATACCGAGGT+TGG | + | 24220:80990-81009 | None:intergenic | 50.0% | |
| ATTCCTGGTGCAACCGAACT+TGG | - | 24220:80608-80627 | MS.gene25721:CDS | 50.0% | |
| CAATGGATAAAGACGCGTCC+CGG | + | 24220:79725-79744 | None:intergenic | 50.0% | |
| CATGTTGCTCGCATATGCAC+GGG | + | 24220:79893-79912 | None:intergenic | 50.0% | |
| CCATGTTGCTCGCATATGCA+CGG | + | 24220:79894-79913 | None:intergenic | 50.0% | |
| CGTGCATATGCGAGCAACAT+GGG | - | 24220:79892-79911 | MS.gene25721:CDS | 50.0% | |
| CTCCAATCTACACCCAACCT+CGG | - | 24220:80974-80993 | MS.gene25721:intron | 50.0% | |
| CTGGAAGAGTGAGGGAAATG+GGG | - | 24220:81647-81666 | MS.gene25721:CDS | 50.0% | |
| GAAGCTGCAAGGGAAACTGA+AGG | - | 24220:81780-81799 | MS.gene25721:CDS | 50.0% | |
| GATTAGGTGTGTCCCTGTGT+CGG | + | 24220:79375-79394 | None:intergenic | 50.0% | |
| GCAAAACCAGCTGTTCCTCT+TGG | - | 24220:79757-79776 | MS.gene25721:intron | 50.0% | |
| GCTAAAGGCAGTGTTCCGAT+TGG | - | 24220:81451-81470 | MS.gene25721:intron | 50.0% | |
| GCTGGAAGAGTGAGGGAAAT+GGG | - | 24220:81646-81665 | MS.gene25721:CDS | 50.0% | |
| GGCAGTGTTCCGATTGGTAT+TGG | - | 24220:81457-81476 | MS.gene25721:intron | 50.0% | |
| TACCGAGGTTGGGTGTAGAT+TGG | + | 24220:80979-80998 | None:intergenic | 50.0% | |
| TCTCGATGACGAGAGAGCAA+AGG | - | 24220:80478-80497 | MS.gene25721:CDS | 50.0% | |
| TGCAGACAGATGCTGATAGG+AGG | - | 24220:81419-81438 | MS.gene25721:intron | 50.0% | |
| TGCTGCAGACAGATGCTGAT+AGG | - | 24220:81416-81435 | MS.gene25721:intron | 50.0% | |
| TGCTGGAAGAGTGAGGGAAA+TGG | - | 24220:81645-81664 | MS.gene25721:CDS | 50.0% | |
| TGGAAGAGTGAGGGAAATGG+GGG | - | 24220:81648-81667 | MS.gene25721:CDS | 50.0% | |
| TGGAGGCAAATACCGAGGTT+GGG | + | 24220:80989-81008 | None:intergenic | 50.0% | |
| TTCCTGGTGCAAACGACTTC+GGG | - | 24220:80576-80595 | MS.gene25721:CDS | 50.0% | |
| TTCCTGGTGCAACCGAACTT+GGG | - | 24220:80609-80628 | MS.gene25721:CDS | 50.0% | |
| TTGCACCAGGAAACTTGTCG+CGG | + | 24220:80568-80587 | None:intergenic | 50.0% | |
| TTTGCCCGCTTCTTGGTCAA+TGG | + | 24220:79742-79761 | None:intergenic | 50.0% | |
| TTTGCTCCAAGAGGAACAGC+TGG | + | 24220:79766-79785 | None:intergenic | 50.0% | |
| ! | ATTATACTTGGAGGGGGTGC+CGG | - | 24220:79703-79722 | MS.gene25721:intron | 50.0% |
| ! | GCCCTTCATTGTTTCTCCCA+AGG | - | 24220:78724-78743 | MS.gene25721:intron | 50.0% |
| ACGGGACAAGTGCCTGTTCA+AGG | + | 24220:79875-79894 | None:intergenic | 55.0% | |
| ATCCCAAGTTCGGTTGCACC+AGG | + | 24220:80614-80633 | None:intergenic | 55.0% | |
| CACCGTTGCTGCATTGCCAA+TGG | - | 24220:80241-80260 | MS.gene25721:CDS | 55.0% | |
| CCGTGCATATGCGAGCAACA+TGG | - | 24220:79891-79910 | MS.gene25721:CDS | 55.0% | |
| GCATATGCGAGCAACATGGG+TGG | - | 24220:79895-79914 | MS.gene25721:CDS | 55.0% | |
| GTGGCACGTGCTTCATCCAT+TGG | + | 24220:80260-80279 | None:intergenic | 55.0% | |
| ! | GAAGCACGTGCCACTGCATT+CGG | - | 24220:80266-80285 | MS.gene25721:CDS | 55.0% |
| ! | GTGGGCTGTGGCTGTTAGAT+TGG | - | 24220:79514-79533 | MS.gene25721:intron | 55.0% |
| !! | TTATACTTGGAGGGGGTGCC+GGG | - | 24220:79704-79723 | MS.gene25721:intron | 55.0% |
| !!! | AGCTGGTTTTGCCCGCTTCT+TGG | + | 24220:79749-79768 | None:intergenic | 55.0% |
| ACTGACGCGTGTCCGACACA+GGG | - | 24220:79360-79379 | MS.gene25721:intron | 60.0% | |
| AGGGAACTGCAGATGCGGTG+AGG | - | 24220:80096-80115 | MS.gene25721:CDS | 60.0% | |
| CTCCCGAAGTCGTTTGCACC+AGG | + | 24220:80581-80600 | None:intergenic | 60.0% | |
| CTGCTCCGCGACAAGTTTCC+TGG | - | 24220:80560-80579 | MS.gene25721:CDS | 60.0% | |
| CACTGACGCGTGTCCGACAC+AGG | - | 24220:79359-79378 | MS.gene25721:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 24220 | gene | 78557 | 81872 | 78557 | ID=MS.gene25721 |
| 24220 | mRNA | 78557 | 81872 | 78557 | ID=MS.gene25721.t1;Parent=MS.gene25721 |
| 24220 | exon | 81630 | 81872 | 81630 | ID=MS.gene25721.t1.exon1;Parent=MS.gene25721.t1 |
| 24220 | CDS | 81630 | 81872 | 81630 | ID=cds.MS.gene25721.t1;Parent=MS.gene25721.t1 |
| 24220 | exon | 80442 | 80738 | 80442 | ID=MS.gene25721.t1.exon2;Parent=MS.gene25721.t1 |
| 24220 | CDS | 80442 | 80738 | 80442 | ID=cds.MS.gene25721.t1;Parent=MS.gene25721.t1 |
| 24220 | exon | 80062 | 80331 | 80062 | ID=MS.gene25721.t1.exon3;Parent=MS.gene25721.t1 |
| 24220 | CDS | 80062 | 80331 | 80062 | ID=cds.MS.gene25721.t1;Parent=MS.gene25721.t1 |
| 24220 | exon | 79792 | 79971 | 79792 | ID=MS.gene25721.t1.exon4;Parent=MS.gene25721.t1 |
| 24220 | CDS | 79792 | 79971 | 79792 | ID=cds.MS.gene25721.t1;Parent=MS.gene25721.t1 |
| 24220 | exon | 79577 | 79680 | 79577 | ID=MS.gene25721.t1.exon5;Parent=MS.gene25721.t1 |
| 24220 | CDS | 79577 | 79680 | 79577 | ID=cds.MS.gene25721.t1;Parent=MS.gene25721.t1 |
| 24220 | exon | 79361 | 79472 | 79361 | ID=MS.gene25721.t1.exon6;Parent=MS.gene25721.t1 |
| 24220 | CDS | 79361 | 79472 | 79361 | ID=cds.MS.gene25721.t1;Parent=MS.gene25721.t1 |
| 24220 | exon | 79111 | 79209 | 79111 | ID=MS.gene25721.t1.exon7;Parent=MS.gene25721.t1 |
| 24220 | CDS | 79111 | 79209 | 79111 | ID=cds.MS.gene25721.t1;Parent=MS.gene25721.t1 |
| 24220 | exon | 78886 | 79005 | 78886 | ID=MS.gene25721.t1.exon8;Parent=MS.gene25721.t1 |
| 24220 | CDS | 78886 | 79005 | 78886 | ID=cds.MS.gene25721.t1;Parent=MS.gene25721.t1 |
| 24220 | exon | 78557 | 78673 | 78557 | ID=MS.gene25721.t1.exon9;Parent=MS.gene25721.t1 |
| 24220 | CDS | 78557 | 78673 | 78557 | ID=cds.MS.gene25721.t1;Parent=MS.gene25721.t1 |
| Gene Sequence |
| Protein sequence |
