Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26761.t1 | XP_003609906.1 | 97.8 | 227 | 5 | 0 | 8 | 234 | 14 | 240 | 3.60E-122 | 447.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26761.t1 | P93045 | 77.1 | 227 | 52 | 0 | 8 | 234 | 14 | 240 | 2.3e-101 | 369.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26761.t1 | G7JR36 | 97.8 | 227 | 5 | 0 | 8 | 234 | 14 | 240 | 2.6e-122 | 447.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene001031 | MS.gene26761 | PPI |
| MS.gene81099 | MS.gene26761 | PPI |
| MS.gene071366 | MS.gene26761 | PPI |
| MS.gene071364 | MS.gene26761 | PPI |
| MS.gene018762 | MS.gene26761 | PPI |
| MS.gene070946 | MS.gene26761 | PPI |
| MS.gene020313 | MS.gene26761 | PPI |
| MS.gene49473 | MS.gene26761 | PPI |
| MS.gene043821 | MS.gene26761 | PPI |
| MS.gene26761 | MS.gene76352 | PPI |
| MS.gene04820 | MS.gene26761 | PPI |
| MS.gene043818 | MS.gene26761 | PPI |
| MS.gene024860 | MS.gene26761 | PPI |
| MS.gene28495 | MS.gene26761 | PPI |
| MS.gene77163 | MS.gene26761 | PPI |
| MS.gene95803 | MS.gene26761 | PPI |
| MS.gene21834 | MS.gene26761 | PPI |
| MS.gene011927 | MS.gene26761 | PPI |
| MS.gene46303 | MS.gene26761 | PPI |
| MS.gene77160 | MS.gene26761 | PPI |
| MS.gene34372 | MS.gene26761 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26761.t1 | MTR_4g124260 | 97.797 | 227 | 5 | 0 | 8 | 234 | 14 | 240 | 5.36e-164 | 452 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26761.t1 | AT3G17590 | 77.093 | 227 | 52 | 0 | 8 | 234 | 16 | 242 | 1.62e-134 | 378 |
| MS.gene26761.t1 | AT3G17590 | 77.093 | 227 | 52 | 0 | 8 | 234 | 14 | 240 | 2.52e-133 | 375 |
| MS.gene26761.t1 | AT3G17590 | 71.806 | 227 | 51 | 1 | 8 | 234 | 14 | 227 | 7.66e-120 | 340 |
Find 56 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGACTTGGTCAAGCTATT+TGG | 0.270286 | 8.3:+5110155 | MS.gene26761:CDS |
| AAGGTTCTTGCAAACTCTTC+AGG | 0.281000 | 8.3:-5109575 | None:intergenic |
| GCCTTCACTTGGAACCCTTC+TGG | 0.293675 | 8.3:+5108002 | MS.gene26761:CDS |
| CAAAGGAAGAGAGAAATTTC+AGG | 0.307735 | 8.3:+5111012 | MS.gene26761:CDS |
| TTCTCTCTTCCTTTGCTTCA+AGG | 0.322314 | 8.3:-5111004 | None:intergenic |
| AACACTACAATCTCAGAATC+AGG | 0.412173 | 8.3:-5108127 | None:intergenic |
| AGAAGAGAAATGTACTTGAA+TGG | 0.412442 | 8.3:-5108212 | None:intergenic |
| GAGAGAGAGGCAGACCTTGA+TGG | 0.438619 | 8.3:-5108396 | None:intergenic |
| GGGCTGACTTCTTTCCAGTC+AGG | 0.438902 | 8.3:+5109992 | MS.gene26761:CDS |
| ATACATATCTTGACCGTCAT+AGG | 0.457986 | 8.3:-5108354 | None:intergenic |
| GTATTAAATCTAGTGTTGTT+CGG | 0.462848 | 8.3:+5110177 | MS.gene26761:CDS |
| AGGCGCTGTAGCAGTGGACT+TGG | 0.473348 | 8.3:+5110142 | MS.gene26761:CDS |
| ATTTCAATGTCGAGTCGAAT+GGG | 0.476706 | 8.3:-5107957 | None:intergenic |
| TGAGCAATTTGAGTAACAAA+AGG | 0.480272 | 8.3:-5108187 | None:intergenic |
| GATTTCAATGTCGAGTCGAA+TGG | 0.493002 | 8.3:-5107958 | None:intergenic |
| GACGGTCAAGATATGTATGC+TGG | 0.501652 | 8.3:+5108359 | MS.gene26761:CDS |
| AAGGATATCAACTTCCTCGT+TGG | 0.523168 | 8.3:-5110985 | None:intergenic |
| TGTAAATCATACGCTTGTAA+AGG | 0.524144 | 8.3:+5109405 | MS.gene26761:CDS |
| GGCATTGAGGATCCTGAGGT+TGG | 0.528970 | 8.3:+5109611 | MS.gene26761:CDS |
| AGAGAGAGGCAGACCTTGAT+GGG | 0.529112 | 8.3:-5108395 | None:intergenic |
| GAAAGCAGATTAAGCAAGAA+GGG | 0.529838 | 8.3:+5109961 | MS.gene26761:CDS |
| CTGCAGAGACATGGGCATTG+AGG | 0.530287 | 8.3:+5109598 | MS.gene26761:CDS |
| AGAAAGCAGATTAAGCAAGA+AGG | 0.537341 | 8.3:+5109960 | MS.gene26761:CDS |
| AAGAACCTTCTGCAGAGACA+TGG | 0.540639 | 8.3:+5109589 | MS.gene26761:CDS |
| CTGATGGCAAAGGCAATAGC+TGG | 0.540724 | 8.3:-5109789 | None:intergenic |
| CTCGTAAAGCTGTTCTCTGA+TGG | 0.544456 | 8.3:-5109805 | None:intergenic |
| GCAATTTGAGTAACAAAAGG+TGG | 0.545843 | 8.3:-5108184 | None:intergenic |
| AGTTGATATCCTTGAAGCAA+AGG | 0.554545 | 8.3:+5110995 | MS.gene26761:CDS |
| TAAAGGAGGCGCTGTAGCAG+TGG | 0.556137 | 8.3:+5110136 | MS.gene26761:CDS |
| ACCAGAAGGGTTCCAAGTGA+AGG | 0.556476 | 8.3:-5108003 | None:intergenic |
| GATACAAGGATGCCTTCACT+TGG | 0.562726 | 8.3:+5107991 | MS.gene26761:CDS |
| AGAGAAGATTGTTCCCATCA+AGG | 0.563391 | 8.3:+5108382 | MS.gene26761:CDS |
| GCTGAATTTCGATCCTATGA+CGG | 0.564430 | 8.3:+5108341 | MS.gene26761:CDS |
| AATGCCCATGTCTCTGCAGA+AGG | 0.565956 | 8.3:-5109594 | None:intergenic |
| GATATACTTACTCCAACCTC+AGG | 0.574479 | 8.3:-5109623 | None:intergenic |
| TTGGATAGAAGATCCACAAT+GGG | 0.575360 | 8.3:-5110966 | None:intergenic |
| TCAGATTGTAGTTCAGAGTG+TGG | 0.590053 | 8.3:+5109927 | MS.gene26761:intron |
| AGAACCTTCTGCAGAGACAT+GGG | 0.593998 | 8.3:+5109590 | MS.gene26761:CDS |
| CATCAGGAAAAGAAAGGAGT+GGG | 0.603636 | 8.3:+5110932 | MS.gene26761:intron |
| CAAAACACACAGGCCAACCT+CGG | 0.612239 | 8.3:+5107923 | MS.gene26761:CDS |
| TAAGCAAGAAGGGTCGTCGA+GGG | 0.614091 | 8.3:+5109971 | MS.gene26761:CDS |
| ATTTGAGTAACAAAAGGTGG+AGG | 0.622715 | 8.3:-5108181 | None:intergenic |
| TGAATGCATCAGGAAAAGAA+AGG | 0.623742 | 8.3:+5110926 | MS.gene26761:intron |
| AATCGACGGTCATAGATACA+AGG | 0.627696 | 8.3:+5107977 | MS.gene26761:CDS |
| CATGGGCATTGAGGATCCTG+AGG | 0.640210 | 8.3:+5109607 | MS.gene26761:CDS |
| CATCAGAGAACAGCTTTACG+AGG | 0.641355 | 8.3:+5109806 | MS.gene26761:CDS |
| TCATCTGTTGACAGTAAAGG+AGG | 0.644374 | 8.3:+5110122 | MS.gene26761:intron |
| GCATCAGGAAAAGAAAGGAG+TGG | 0.653107 | 8.3:+5110931 | MS.gene26761:intron |
| TTAAGCAAGAAGGGTCGTCG+AGG | 0.656519 | 8.3:+5109970 | MS.gene26761:CDS |
| AAGCAAGAAGGGTCGTCGAG+GGG | 0.658726 | 8.3:+5109972 | MS.gene26761:CDS |
| AAGCTGTTCTCTGATGGCAA+AGG | 0.669799 | 8.3:-5109799 | None:intergenic |
| GGATGTATATGAACCCATTG+TGG | 0.673390 | 8.3:+5110953 | MS.gene26761:CDS |
| GTTGGATAGAAGATCCACAA+TGG | 0.673673 | 8.3:-5110967 | None:intergenic |
| CGACTCGACATTGAAATCGA+CGG | 0.674810 | 8.3:+5107963 | MS.gene26761:CDS |
| TAACGATAAACAAAACACAC+AGG | 0.675072 | 8.3:+5107913 | MS.gene26761:CDS |
| TGTGGATCTTCTATCCAACG+AGG | 0.802381 | 8.3:+5110971 | MS.gene26761:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACACATTTATATAAAAAAAA+TGG | - | chr8.3:5109042-5109061 | None:intergenic | 10.0% |
| !! | ATTAAAAAACTATATAAGAA+TGG | - | chr8.3:5108061-5108080 | None:intergenic | 10.0% |
| !! | ATTAATTTATTATTAGCAAT+AGG | - | chr8.3:5109651-5109670 | None:intergenic | 10.0% |
| !! | TATTATTAATTAATTTCACT+TGG | + | chr8.3:5108033-5108052 | MS.gene26761:intron | 10.0% |
| !! | TTATAAAAAAAAAAAACCTA+TGG | - | chr8.3:5108592-5108611 | None:intergenic | 10.0% |
| !!! | TAATTTTGAATACATTTATT+TGG | - | chr8.3:5109114-5109133 | None:intergenic | 10.0% |
| !!! | TATGTTTGTATTTTATTTTA+TGG | + | chr8.3:5110851-5110870 | MS.gene26761:intron | 10.0% |
| !! | AAATTATAATATAAGCTAAG+TGG | - | chr8.3:5110816-5110835 | None:intergenic | 15.0% |
| !! | AATAATAAAAAAATACCAGA+AGG | - | chr8.3:5108020-5108039 | None:intergenic | 15.0% |
| !! | AATACAAACATAATCTTAAA+AGG | - | chr8.3:5110843-5110862 | None:intergenic | 15.0% |
| !! | ATAATAAAAAAATACCAGAA+GGG | - | chr8.3:5108019-5108038 | None:intergenic | 15.0% |
| !! | TAAAACCTATAGTAATAATA+GGG | - | chr8.3:5110354-5110373 | None:intergenic | 15.0% |
| !! | TTAAAACCTATAGTAATAAT+AGG | - | chr8.3:5110355-5110374 | None:intergenic | 15.0% |
| !!! | CTTATAAACTACTATTTTTT+GGG | - | chr8.3:5110407-5110426 | None:intergenic | 15.0% |
| !!! | TTATAAACAAATTTGATGAT+TGG | + | chr8.3:5110526-5110545 | MS.gene26761:intron | 15.0% |
| !!! | TTCAACTTATTTGTAATTTT+TGG | + | chr8.3:5110711-5110730 | MS.gene26761:intron | 15.0% |
| !! | AATTTATTATTAGCAATAGG+TGG | - | chr8.3:5109648-5109667 | None:intergenic | 20.0% |
| !! | AATTTCAAAGTCCATAATAA+TGG | - | chr8.3:5109705-5109724 | None:intergenic | 20.0% |
| !! | ATGAACTAACAGATATTAAT+AGG | - | chr8.3:5110504-5110523 | None:intergenic | 20.0% |
| !! | ATTGATCATTGAAAAGAAAA+GGG | - | chr8.3:5108925-5108944 | None:intergenic | 20.0% |
| !! | ATTTCAAAGTCCATAATAAT+GGG | - | chr8.3:5109704-5109723 | None:intergenic | 20.0% |
| !! | GTATGTTTCAAATTTCAAAA+AGG | - | chr8.3:5109741-5109760 | None:intergenic | 20.0% |
| !! | TATGTTATAAGCTACTATAT+TGG | + | chr8.3:5108526-5108545 | MS.gene26761:intron | 20.0% |
| !!! | AGAGTGTAAATTAGTTTTAA+AGG | - | chr8.3:5108881-5108900 | None:intergenic | 20.0% |
| !!! | AGTGTATTTTTTACAATTAG+AGG | + | chr8.3:5109266-5109285 | MS.gene26761:intron | 20.0% |
| !!! | AGTTAAAGTTCTTTTTCATA+TGG | + | chr8.3:5110312-5110331 | MS.gene26761:intron | 20.0% |
| !!! | ATAATTTTCAATGTCATTGA+TGG | - | chr8.3:5109149-5109168 | None:intergenic | 20.0% |
| !!! | GAAAATTATACACATGTTTT+TGG | + | chr8.3:5109160-5109179 | MS.gene26761:intron | 20.0% |
| !!! | GAGTGTAAATTAGTTTTAAA+GGG | - | chr8.3:5108880-5108899 | None:intergenic | 20.0% |
| !!! | GCTTATAAACTACTATTTTT+TGG | - | chr8.3:5110408-5110427 | None:intergenic | 20.0% |
| ! | AAAAACAAGTCAATCCAAAT+GGG | - | chr8.3:5108664-5108683 | None:intergenic | 25.0% |
| ! | AGTTTCCCTATTATTACTAT+AGG | + | chr8.3:5110346-5110365 | MS.gene26761:intron | 25.0% |
| ! | ATGAAAATGAATTAAGACGA+TGG | - | chr8.3:5109905-5109924 | None:intergenic | 25.0% |
| ! | ATTGGTCATTGAAAAGAAAA+GGG | - | chr8.3:5108966-5108985 | None:intergenic | 25.0% |
| ! | CATTGATCATTGAAAAGAAA+AGG | - | chr8.3:5108926-5108945 | None:intergenic | 25.0% |
| ! | TCAAATTAGTCAATCCAAAA+AGG | + | chr8.3:5108837-5108856 | MS.gene26761:intron | 25.0% |
| ! | TGTAATAGTACCCATTATTA+TGG | + | chr8.3:5109691-5109710 | MS.gene26761:intron | 25.0% |
| ! | TGTATTCAAAATTACGTACT+TGG | + | chr8.3:5109120-5109139 | MS.gene26761:intron | 25.0% |
| ! | TTAGCTAATTTGAACATACA+AGG | + | chr8.3:5110667-5110686 | MS.gene26761:intron | 25.0% |
| ! | TTTATCATATCAACTGAACT+AGG | - | chr8.3:5110036-5110055 | None:intergenic | 25.0% |
| !! | GTATTAAATCTAGTGTTGTT+CGG | + | chr8.3:5110177-5110196 | MS.gene26761:CDS | 25.0% |
| !! | TGTAAAGGACCAATTTTTAT+GGG | + | chr8.3:5109420-5109439 | MS.gene26761:CDS | 25.0% |
| !! | TTGTAAAGGACCAATTTTTA+TGG | + | chr8.3:5109419-5109438 | MS.gene26761:CDS | 25.0% |
| !!! | AACAGTTTTGTAAGTGTTTA+TGG | + | chr8.3:5108621-5108640 | MS.gene26761:intron | 25.0% |
| !!! | ATACACATGTTTTTGGAAAT+TGG | + | chr8.3:5109167-5109186 | MS.gene26761:intron | 25.0% |
| !!! | ATTGGAAGACTTGTTTTAAA+AGG | + | chr8.3:5109185-5109204 | MS.gene26761:intron | 25.0% |
| !!! | ATTTTTTACAATTAGAGGAG+AGG | + | chr8.3:5109271-5109290 | MS.gene26761:intron | 25.0% |
| !!! | TTTTTGAGCTTATGAAAAGT+AGG | + | chr8.3:5108679-5108698 | MS.gene26761:intron | 25.0% |
| AAAGGGATGATAAGAATCTA+TGG | - | chr8.3:5108863-5108882 | None:intergenic | 30.0% | |
| AAGGTTCGTTTACATCATAA+TGG | + | chr8.3:5109204-5109223 | MS.gene26761:intron | 30.0% | |
| ACAATTTATGAACATGCCAT+AGG | + | chr8.3:5108573-5108592 | MS.gene26761:intron | 30.0% | |
| AGAAGAGAAATGTACTTGAA+TGG | - | chr8.3:5108215-5108234 | None:intergenic | 30.0% | |
| CAAAAACAAGTCAATCCAAA+TGG | - | chr8.3:5108665-5108684 | None:intergenic | 30.0% | |
| CATAATTCATAAGGTTGTCA+AGG | - | chr8.3:5108790-5108809 | None:intergenic | 30.0% | |
| CATTGGTCATTGAAAAGAAA+AGG | - | chr8.3:5108967-5108986 | None:intergenic | 30.0% | |
| CCAATCATATAATACAATGC+CGG | - | chr8.3:5109459-5109478 | None:intergenic | 30.0% | |
| CTACTATATTGGAGAACTTA+TGG | + | chr8.3:5108537-5108556 | MS.gene26761:intron | 30.0% | |
| GATGATCAATTCATGTTTGT+TGG | + | chr8.3:5108292-5108311 | MS.gene26761:intron | 30.0% | |
| GCAATCTTACCCATAAAAAT+TGG | - | chr8.3:5109432-5109451 | None:intergenic | 30.0% | |
| TAACGATAAACAAAACACAC+AGG | + | chr8.3:5107913-5107932 | MS.gene26761:CDS | 30.0% | |
| TGAGCAATTTGAGTAACAAA+AGG | - | chr8.3:5108190-5108209 | None:intergenic | 30.0% | |
| TGGGTACTATTACAAATTCA+AGG | - | chr8.3:5109685-5109704 | None:intergenic | 30.0% | |
| TGTAAATCATACGCTTGTAA+AGG | + | chr8.3:5109405-5109424 | MS.gene26761:CDS | 30.0% | |
| TTAGCTAAAATTGCACAAAC+AGG | - | chr8.3:5110655-5110674 | None:intergenic | 30.0% | |
| TTGATATAATCCGATCATCT+TGG | + | chr8.3:5110264-5110283 | MS.gene26761:intron | 30.0% | |
| ! | AACAACGAGATTTTGTCAAT+AGG | - | chr8.3:5109362-5109381 | None:intergenic | 30.0% |
| ! | ATAAGAATCTATGGCCTTTT+TGG | - | chr8.3:5108854-5108873 | None:intergenic | 30.0% |
| ! | ATATAAGGTGTTTATGGAAC+AGG | - | chr8.3:5108456-5108475 | None:intergenic | 30.0% |
| ! | GCTTTTACGCATAATTCATA+AGG | - | chr8.3:5108799-5108818 | None:intergenic | 30.0% |
| ! | GTCTACATTTGTTAAATTCC+AGG | + | chr8.3:5109529-5109548 | MS.gene26761:intron | 30.0% |
| ! | TTCTTATGCTTTGACTGTTT+TGG | + | chr8.3:5110902-5110921 | MS.gene26761:intron | 30.0% |
| !!! | AACTACTATTTTTTGGGCAT+AGG | - | chr8.3:5110401-5110420 | None:intergenic | 30.0% |
| AACACTACAATCTCAGAATC+AGG | - | chr8.3:5108130-5108149 | None:intergenic | 35.0% | |
| AAGTGTATGAAAAACCTGAC+TGG | - | chr8.3:5110009-5110028 | None:intergenic | 35.0% | |
| ACACTTACAAAACTGTTCAG+AGG | - | chr8.3:5108618-5108637 | None:intergenic | 35.0% | |
| AGAAAGCAGATTAAGCAAGA+AGG | + | chr8.3:5109960-5109979 | MS.gene26761:CDS | 35.0% | |
| AGCACATTTCATTTCTCTAC+GGG | + | chr8.3:5109237-5109256 | MS.gene26761:intron | 35.0% | |
| ATACATATCTTGACCGTCAT+AGG | - | chr8.3:5108357-5108376 | None:intergenic | 35.0% | |
| ATCATTGAAAAGAAAAGGGC+AGG | - | chr8.3:5108921-5108940 | None:intergenic | 35.0% | |
| ATCTTGGACTGTTTAAGTCT+TGG | + | chr8.3:5110280-5110299 | MS.gene26761:intron | 35.0% | |
| ATGTTCCTTGGATTGAACTA+GGG | + | chr8.3:5108426-5108445 | MS.gene26761:intron | 35.0% | |
| ATTTCAATGTCGAGTCGAAT+GGG | - | chr8.3:5107960-5107979 | None:intergenic | 35.0% | |
| ATTTGAGTAACAAAAGGTGG+AGG | - | chr8.3:5108184-5108203 | None:intergenic | 35.0% | |
| CAAAGGAAGAGAGAAATTTC+AGG | + | chr8.3:5111012-5111031 | MS.gene26761:CDS | 35.0% | |
| CAAATGTAGACACATACATG+AGG | - | chr8.3:5109520-5109539 | None:intergenic | 35.0% | |
| CAGCACATTTCATTTCTCTA+CGG | + | chr8.3:5109236-5109255 | MS.gene26761:intron | 35.0% | |
| CCGGCATTGTATTATATGAT+TGG | + | chr8.3:5109456-5109475 | MS.gene26761:intron | 35.0% | |
| CTATCATCTGTTGACAGTAA+AGG | + | chr8.3:5110119-5110138 | MS.gene26761:intron | 35.0% | |
| CTTAAACAGTCCAAGATGAT+CGG | - | chr8.3:5110277-5110296 | None:intergenic | 35.0% | |
| GAAAGCAGATTAAGCAAGAA+GGG | + | chr8.3:5109961-5109980 | MS.gene26761:CDS | 35.0% | |
| GAACATAAAAAGAGAGAGAG+AGG | - | chr8.3:5108412-5108431 | None:intergenic | 35.0% | |
| GCAATTTGAGTAACAAAAGG+TGG | - | chr8.3:5108187-5108206 | None:intergenic | 35.0% | |
| GTCGCTTGTAATCATATCAT+TGG | - | chr8.3:5108984-5109003 | None:intergenic | 35.0% | |
| TACGAGGTCATTCATTCTAT+TGG | + | chr8.3:5109822-5109841 | MS.gene26761:intron | 35.0% | |
| TATCAAAGTTGTTCAAGTCC+TGG | - | chr8.3:5109550-5109569 | None:intergenic | 35.0% | |
| TATCCATGAGCGCTTATATA+AGG | - | chr8.3:5108471-5108490 | None:intergenic | 35.0% | |
| TATGTTCCTTGGATTGAACT+AGG | + | chr8.3:5108425-5108444 | MS.gene26761:intron | 35.0% | |
| TGAATGCATCAGGAAAAGAA+AGG | + | chr8.3:5110926-5110945 | MS.gene26761:intron | 35.0% | |
| TTGGATAGAAGATCCACAAT+GGG | - | chr8.3:5110969-5110988 | None:intergenic | 35.0% | |
| ! | AGTTGATATCCTTGAAGCAA+AGG | + | chr8.3:5110995-5111014 | MS.gene26761:CDS | 35.0% |
| ! | CAAATTTGATGATTGGTGCA+AGG | + | chr8.3:5110533-5110552 | MS.gene26761:intron | 35.0% |
| ! | CTCTCTCTTTTTATGTTCCT+TGG | + | chr8.3:5108414-5108433 | MS.gene26761:intron | 35.0% |
| ! | GCGCTTATATAAGGTGTTTA+TGG | - | chr8.3:5108462-5108481 | None:intergenic | 35.0% |
| ! | GTTTTGTAAGTGTTTATGGC+TGG | + | chr8.3:5108625-5108644 | MS.gene26761:intron | 35.0% |
| ! | TAAGGTTGTCAAGGTACTTA+TGG | - | chr8.3:5108781-5108800 | None:intergenic | 35.0% |
| !!! | TGATTTGCTGCACTTTTTGT+TGG | + | chr8.3:5109492-5109511 | MS.gene26761:intron | 35.0% |
| AAGCTAAGTGGTTTGATGCA+TGG | - | chr8.3:5110804-5110823 | None:intergenic | 40.0% | |
| AAGGATATCAACTTCCTCGT+TGG | - | chr8.3:5110988-5111007 | None:intergenic | 40.0% | |
| AAGGTTCTTGCAAACTCTTC+AGG | - | chr8.3:5109578-5109597 | None:intergenic | 40.0% | |
| AATCGACGGTCATAGATACA+AGG | + | chr8.3:5107977-5107996 | MS.gene26761:CDS | 40.0% | |
| ACACCTTATATAAGCGCTCA+TGG | + | chr8.3:5108465-5108484 | MS.gene26761:intron | 40.0% | |
| AGAGAAGATTGTTCCCATCA+AGG | + | chr8.3:5108382-5108401 | MS.gene26761:CDS | 40.0% | |
| ATAAGCCTCAAAATCCAGCT+TGG | + | chr8.3:5110422-5110441 | MS.gene26761:intron | 40.0% | |
| CATCAGGAAAAGAAAGGAGT+GGG | + | chr8.3:5110932-5110951 | MS.gene26761:intron | 40.0% | |
| GATATACTTACTCCAACCTC+AGG | - | chr8.3:5109626-5109645 | None:intergenic | 40.0% | |
| GATTTCAATGTCGAGTCGAA+TGG | - | chr8.3:5107961-5107980 | None:intergenic | 40.0% | |
| GCACATTTCATTTCTCTACG+GGG | + | chr8.3:5109238-5109257 | MS.gene26761:intron | 40.0% | |
| GCTGAATTTCGATCCTATGA+CGG | + | chr8.3:5108341-5108360 | MS.gene26761:CDS | 40.0% | |
| GCTGCAAAACAGTAGCATTT+AGG | - | chr8.3:5109770-5109789 | None:intergenic | 40.0% | |
| GGAGAAGCTACTTGTTTGTT+TGG | + | chr8.3:5110688-5110707 | MS.gene26761:intron | 40.0% | |
| GGATGTATATGAACCCATTG+TGG | + | chr8.3:5110953-5110972 | MS.gene26761:CDS | 40.0% | |
| GTCGTTTAAGCATCTCTCAA+GGG | + | chr8.3:5109297-5109316 | MS.gene26761:intron | 40.0% | |
| GTTGGATAGAAGATCCACAA+TGG | - | chr8.3:5110970-5110989 | None:intergenic | 40.0% | |
| TCAGATTGTAGTTCAGAGTG+TGG | + | chr8.3:5109927-5109946 | MS.gene26761:intron | 40.0% | |
| TCATCTGTTGACAGTAAAGG+AGG | + | chr8.3:5110122-5110141 | MS.gene26761:intron | 40.0% | |
| TTCTCTCTTCCTTTGCTTCA+AGG | - | chr8.3:5111007-5111026 | None:intergenic | 40.0% | |
| ! | TAAGGTGTTTATGGAACAGG+AGG | - | chr8.3:5108453-5108472 | None:intergenic | 40.0% |
| ! | TCCAAATGGGCCTTATATAC+TGG | - | chr8.3:5108651-5108670 | None:intergenic | 40.0% |
| ! | TGTCGTTTAAGCATCTCTCA+AGG | + | chr8.3:5109296-5109315 | MS.gene26761:intron | 40.0% |
| ! | TTATGGCTGGCCAGTATATA+AGG | + | chr8.3:5108638-5108657 | MS.gene26761:intron | 40.0% |
| !!! | CTGTTTTGGTTGAATGCATC+AGG | + | chr8.3:5110916-5110935 | MS.gene26761:intron | 40.0% |
| AAAAGGGCAGGCTTCTTTGA+TGG | - | chr8.3:5108909-5108928 | None:intergenic | 45.0% | |
| AAAGGGCAGGCTTCTTTGAT+GGG | - | chr8.3:5108908-5108927 | None:intergenic | 45.0% | |
| AAGAACCTTCTGCAGAGACA+TGG | + | chr8.3:5109589-5109608 | MS.gene26761:CDS | 45.0% | |
| AAGCTGTTCTCTGATGGCAA+AGG | - | chr8.3:5109802-5109821 | None:intergenic | 45.0% | |
| AGAACCTTCTGCAGAGACAT+GGG | + | chr8.3:5109590-5109609 | MS.gene26761:CDS | 45.0% | |
| CATCAGAGAACAGCTTTACG+AGG | + | chr8.3:5109806-5109825 | MS.gene26761:CDS | 45.0% | |
| CCTCAAAATCCAGCTTGGTA+AGG | + | chr8.3:5110427-5110446 | MS.gene26761:intron | 45.0% | |
| CGACTCGACATTGAAATCGA+CGG | + | chr8.3:5107963-5107982 | MS.gene26761:CDS | 45.0% | |
| CTCGTAAAGCTGTTCTCTGA+TGG | - | chr8.3:5109808-5109827 | None:intergenic | 45.0% | |
| GACGGTCAAGATATGTATGC+TGG | + | chr8.3:5108359-5108378 | MS.gene26761:CDS | 45.0% | |
| GATACAAGGATGCCTTCACT+TGG | + | chr8.3:5107991-5108010 | MS.gene26761:CDS | 45.0% | |
| GATTGGTGCAAGGACTATTG+TGG | + | chr8.3:5110543-5110562 | MS.gene26761:intron | 45.0% | |
| GCATCAGGAAAAGAAAGGAG+TGG | + | chr8.3:5110931-5110950 | MS.gene26761:intron | 45.0% | |
| GCCAGTATATAAGGCCCATT+TGG | + | chr8.3:5108647-5108666 | MS.gene26761:intron | 45.0% | |
| TATGGGTAAGATTGCAGCAC+CGG | + | chr8.3:5109437-5109456 | MS.gene26761:intron | 45.0% | |
| TGTGGATCTTCTATCCAACG+AGG | + | chr8.3:5110971-5110990 | MS.gene26761:CDS | 45.0% | |
| TTGGTAAGGCAGTTAAGCAG+CGG | + | chr8.3:5110441-5110460 | MS.gene26761:intron | 45.0% | |
| ! | AATGGGTACGAGATTTTCCG+AGG | - | chr8.3:5107943-5107962 | None:intergenic | 45.0% |
| ! | CCTTACCAAGCTGGATTTTG+AGG | - | chr8.3:5110430-5110449 | None:intergenic | 45.0% |
| ! | GTGGACTTGGTCAAGCTATT+TGG | + | chr8.3:5110155-5110174 | MS.gene26761:CDS | 45.0% |
| !! | CTTATATATATATATATATA+TGG | + | chr8.3:5109871-5109890 | MS.gene26761:intron | 5.0% |
| !! | TTAATATTAAGTAATTTATA+AGG | + | chr8.3:5110371-5110390 | MS.gene26761:intron | 5.0% |
| AAGGGCAGGCTTCTTTGATG+GGG | - | chr8.3:5108907-5108926 | None:intergenic | 50.0% | |
| AATGCCCATGTCTCTGCAGA+AGG | - | chr8.3:5109597-5109616 | None:intergenic | 50.0% | |
| ACCAGAAGGGTTCCAAGTGA+AGG | - | chr8.3:5108006-5108025 | None:intergenic | 50.0% | |
| AGAGAGAGGCAGACCTTGAT+GGG | - | chr8.3:5108398-5108417 | None:intergenic | 50.0% | |
| CAAAACACACAGGCCAACCT+CGG | + | chr8.3:5107923-5107942 | MS.gene26761:CDS | 50.0% | |
| CTGATGGCAAAGGCAATAGC+TGG | - | chr8.3:5109792-5109811 | None:intergenic | 50.0% | |
| GAGGACCCTAGTTCAATCCA+AGG | - | chr8.3:5108434-5108453 | None:intergenic | 50.0% | |
| GCTTAACTGCCTTACCAAGC+TGG | - | chr8.3:5110439-5110458 | None:intergenic | 50.0% | |
| TAAGCAAGAAGGGTCGTCGA+GGG | + | chr8.3:5109971-5109990 | MS.gene26761:CDS | 50.0% | |
| TTAAGCAAGAAGGGTCGTCG+AGG | + | chr8.3:5109970-5109989 | MS.gene26761:CDS | 50.0% | |
| ! | GGTACGAGATTTTCCGAGGT+TGG | - | chr8.3:5107939-5107958 | None:intergenic | 50.0% |
| AAGCAAGAAGGGTCGTCGAG+GGG | + | chr8.3:5109972-5109991 | MS.gene26761:CDS | 55.0% | |
| AGGGCAGGCTTCTTTGATGG+GGG | - | chr8.3:5108906-5108925 | None:intergenic | 55.0% | |
| GAGAGAGAGGCAGACCTTGA+TGG | - | chr8.3:5108399-5108418 | None:intergenic | 55.0% | |
| GCCTTCACTTGGAACCCTTC+TGG | + | chr8.3:5108002-5108021 | MS.gene26761:CDS | 55.0% | |
| ! | CTGCAGAGACATGGGCATTG+AGG | + | chr8.3:5109598-5109617 | MS.gene26761:CDS | 55.0% |
| ! | GGCATTGAGGATCCTGAGGT+TGG | + | chr8.3:5109611-5109630 | MS.gene26761:CDS | 55.0% |
| ! | GGGCTGACTTCTTTCCAGTC+AGG | + | chr8.3:5109992-5110011 | MS.gene26761:CDS | 55.0% |
| !! | CATGGGCATTGAGGATCCTG+AGG | + | chr8.3:5109607-5109626 | MS.gene26761:CDS | 55.0% |
| !! | TAAAGGAGGCGCTGTAGCAG+TGG | + | chr8.3:5110136-5110155 | MS.gene26761:CDS | 55.0% |
| ! | AGGCGCTGTAGCAGTGGACT+TGG | + | chr8.3:5110142-5110161 | MS.gene26761:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 5107903 | 5111037 | 5107903 | ID=MS.gene26761 |
| chr8.3 | mRNA | 5107903 | 5111037 | 5107903 | ID=MS.gene26761.t1;Parent=MS.gene26761 |
| chr8.3 | exon | 5107903 | 5108023 | 5107903 | ID=MS.gene26761.t1.exon1;Parent=MS.gene26761.t1 |
| chr8.3 | CDS | 5107903 | 5108023 | 5107903 | ID=cds.MS.gene26761.t1;Parent=MS.gene26761.t1 |
| chr8.3 | exon | 5108125 | 5108219 | 5108125 | ID=MS.gene26761.t1.exon2;Parent=MS.gene26761.t1 |
| chr8.3 | CDS | 5108125 | 5108219 | 5108125 | ID=cds.MS.gene26761.t1;Parent=MS.gene26761.t1 |
| chr8.3 | exon | 5108332 | 5108403 | 5108332 | ID=MS.gene26761.t1.exon3;Parent=MS.gene26761.t1 |
| chr8.3 | CDS | 5108332 | 5108403 | 5108332 | ID=cds.MS.gene26761.t1;Parent=MS.gene26761.t1 |
| chr8.3 | exon | 5109394 | 5109441 | 5109394 | ID=MS.gene26761.t1.exon4;Parent=MS.gene26761.t1 |
| chr8.3 | CDS | 5109394 | 5109441 | 5109394 | ID=cds.MS.gene26761.t1;Parent=MS.gene26761.t1 |
| chr8.3 | exon | 5109551 | 5109634 | 5109551 | ID=MS.gene26761.t1.exon5;Parent=MS.gene26761.t1 |
| chr8.3 | CDS | 5109551 | 5109634 | 5109551 | ID=cds.MS.gene26761.t1;Parent=MS.gene26761.t1 |
| chr8.3 | exon | 5109789 | 5109827 | 5109789 | ID=MS.gene26761.t1.exon6;Parent=MS.gene26761.t1 |
| chr8.3 | CDS | 5109789 | 5109827 | 5109789 | ID=cds.MS.gene26761.t1;Parent=MS.gene26761.t1 |
| chr8.3 | exon | 5109931 | 5110013 | 5109931 | ID=MS.gene26761.t1.exon7;Parent=MS.gene26761.t1 |
| chr8.3 | CDS | 5109931 | 5110013 | 5109931 | ID=cds.MS.gene26761.t1;Parent=MS.gene26761.t1 |
| chr8.3 | exon | 5110136 | 5110198 | 5110136 | ID=MS.gene26761.t1.exon8;Parent=MS.gene26761.t1 |
| chr8.3 | CDS | 5110136 | 5110198 | 5110136 | ID=cds.MS.gene26761.t1;Parent=MS.gene26761.t1 |
| chr8.3 | exon | 5110938 | 5111037 | 5110938 | ID=MS.gene26761.t1.exon9;Parent=MS.gene26761.t1 |
| chr8.3 | CDS | 5110938 | 5111037 | 5110938 | ID=cds.MS.gene26761.t1;Parent=MS.gene26761.t1 |
| Gene Sequence |
| Protein sequence |
