Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27444.t1 | XP_024641908.1 | 99 | 315 | 3 | 0 | 1 | 315 | 1 | 315 | 3.50E-173 | 617.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27444.t1 | Q9C9X3 | 53.9 | 317 | 141 | 2 | 1 | 314 | 1 | 315 | 2.9e-91 | 336.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27444.t1 | A0A072ULQ2 | 99.0 | 315 | 3 | 0 | 1 | 315 | 1 | 315 | 2.5e-173 | 617.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene058336 | MS.gene27444 | PPI |
| MS.gene57291 | MS.gene27444 | PPI |
| MS.gene45772 | MS.gene27444 | PPI |
| MS.gene061777 | MS.gene27444 | PPI |
| MS.gene27444 | MS.gene67887 | PPI |
| MS.gene030809 | MS.gene27444 | PPI |
| MS.gene056195 | MS.gene27444 | PPI |
| MS.gene27444 | MS.gene92405 | PPI |
| MS.gene89484 | MS.gene27444 | PPI |
| MS.gene55897 | MS.gene27444 | PPI |
| MS.gene016642 | MS.gene27444 | PPI |
| MS.gene27444 | MS.gene043964 | PPI |
| MS.gene28077 | MS.gene27444 | PPI |
| MS.gene010215 | MS.gene27444 | PPI |
| MS.gene00058 | MS.gene27444 | PPI |
| MS.gene035891 | MS.gene27444 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27444.t1 | MTR_6g071595 | 99.048 | 315 | 3 | 0 | 1 | 315 | 1 | 315 | 0.0 | 648 |
| MS.gene27444.t1 | MTR_1g112520 | 88.571 | 315 | 36 | 0 | 1 | 315 | 1 | 315 | 0.0 | 566 |
| MS.gene27444.t1 | MTR_6g071615 | 87.619 | 315 | 39 | 0 | 1 | 315 | 1 | 315 | 0.0 | 561 |
| MS.gene27444.t1 | MTR_6g071605 | 83.810 | 315 | 51 | 0 | 1 | 315 | 1 | 315 | 0.0 | 556 |
| MS.gene27444.t1 | MTR_8g107640 | 77.389 | 314 | 71 | 0 | 1 | 314 | 1 | 314 | 0.0 | 522 |
| MS.gene27444.t1 | MTR_6g071595 | 98.800 | 250 | 3 | 0 | 1 | 250 | 1 | 250 | 0.0 | 514 |
| MS.gene27444.t1 | MTR_1g033560 | 60.063 | 318 | 121 | 3 | 1 | 315 | 1 | 315 | 2.87e-137 | 391 |
| MS.gene27444.t1 | MTR_8g038150 | 38.170 | 317 | 189 | 3 | 1 | 312 | 1 | 315 | 2.27e-69 | 219 |
| MS.gene27444.t1 | MTR_8g038180 | 37.025 | 316 | 196 | 3 | 1 | 315 | 1 | 314 | 1.59e-66 | 211 |
| MS.gene27444.t1 | MTR_8g038220 | 37.261 | 314 | 192 | 4 | 1 | 312 | 1 | 311 | 4.79e-64 | 205 |
| MS.gene27444.t1 | MTR_8g038220 | 36.624 | 314 | 193 | 4 | 1 | 312 | 1 | 310 | 2.15e-63 | 203 |
| MS.gene27444.t1 | MTR_5g063670 | 35.759 | 316 | 199 | 4 | 1 | 314 | 1 | 314 | 3.72e-63 | 202 |
| MS.gene27444.t1 | MTR_3g018780 | 35.238 | 315 | 201 | 3 | 1 | 314 | 1 | 313 | 1.59e-62 | 201 |
| MS.gene27444.t1 | MTR_3g018790 | 36.741 | 313 | 195 | 3 | 1 | 312 | 1 | 311 | 1.28e-61 | 199 |
| MS.gene27444.t1 | MTR_0276s0050 | 36.076 | 316 | 194 | 4 | 1 | 312 | 1 | 312 | 1.92e-59 | 193 |
| MS.gene27444.t1 | MTR_8g038210 | 35.256 | 312 | 200 | 2 | 1 | 312 | 1 | 310 | 1.49e-58 | 191 |
| MS.gene27444.t1 | MTR_2g031980 | 34.824 | 313 | 201 | 3 | 1 | 312 | 1 | 311 | 4.14e-58 | 189 |
| MS.gene27444.t1 | MTR_8g038210 | 34.295 | 312 | 203 | 2 | 1 | 312 | 1 | 310 | 8.83e-57 | 186 |
| MS.gene27444.t1 | MTR_6g028030 | 33.453 | 278 | 169 | 7 | 45 | 310 | 34 | 307 | 1.28e-38 | 139 |
| MS.gene27444.t1 | MTR_3g018790 | 31.950 | 241 | 162 | 2 | 74 | 313 | 19 | 258 | 2.53e-36 | 131 |
| MS.gene27444.t1 | MTR_8g038170 | 29.316 | 307 | 194 | 6 | 22 | 312 | 12 | 311 | 3.91e-35 | 129 |
| MS.gene27444.t1 | MTR_8g038170 | 29.316 | 307 | 194 | 6 | 22 | 312 | 12 | 311 | 3.91e-35 | 129 |
| MS.gene27444.t1 | MTR_3g018920 | 32.075 | 212 | 111 | 3 | 1 | 212 | 1 | 179 | 2.04e-26 | 103 |
| MS.gene27444.t1 | MTR_3g018925 | 42.391 | 92 | 53 | 0 | 222 | 313 | 16 | 107 | 7.91e-16 | 72.8 |
| MS.gene27444.t1 | MTR_8g038090 | 46.377 | 69 | 36 | 1 | 245 | 312 | 22 | 90 | 4.93e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27444.t1 | AT1G68090 | 53.943 | 317 | 141 | 2 | 1 | 314 | 1 | 315 | 1.77e-123 | 356 |
| MS.gene27444.t1 | AT1G68090 | 51.190 | 252 | 118 | 2 | 1 | 249 | 1 | 250 | 2.14e-88 | 265 |
| MS.gene27444.t1 | AT1G68090 | 25.352 | 213 | 138 | 5 | 108 | 311 | 37 | 237 | 6.56e-13 | 67.8 |
| MS.gene27444.t1 | AT5G10230 | 38.608 | 316 | 192 | 2 | 1 | 315 | 1 | 315 | 9.76e-76 | 235 |
| MS.gene27444.t1 | AT5G10220 | 38.050 | 318 | 193 | 3 | 1 | 315 | 1 | 317 | 2.32e-74 | 231 |
| MS.gene27444.t1 | AT5G65020 | 39.683 | 315 | 185 | 4 | 1 | 312 | 1 | 313 | 2.59e-74 | 231 |
| MS.gene27444.t1 | AT1G35720 | 37.658 | 316 | 194 | 3 | 1 | 314 | 1 | 315 | 2.83e-66 | 211 |
| MS.gene27444.t1 | AT5G65020 | 38.621 | 290 | 173 | 4 | 26 | 312 | 11 | 298 | 3.70e-64 | 205 |
| MS.gene27444.t1 | AT5G12380 | 35.016 | 317 | 195 | 5 | 1 | 312 | 1 | 311 | 7.61e-61 | 197 |
| MS.gene27444.t1 | AT2G38760 | 33.125 | 320 | 204 | 5 | 1 | 312 | 1 | 318 | 1.43e-51 | 173 |
| MS.gene27444.t1 | AT2G38750 | 30.195 | 308 | 188 | 8 | 26 | 314 | 19 | 318 | 1.95e-32 | 122 |
| MS.gene27444.t1 | AT2G38750 | 30.195 | 308 | 188 | 8 | 26 | 314 | 2 | 301 | 2.07e-32 | 122 |
Find 0 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAGACATAAAATACTTATT+AGG | + | 42303:4672-4691 | None:intergenic | 15.0% |
| !!! | ATTGAAAGAAGAATTATTTT+TGG | - | 42303:3602-3621 | MS.gene27444:intron | 15.0% |
| !!! | ATTTCAAGTTAATAAAACAA+AGG | - | 42303:6117-6136 | MS.gene27444:intron | 15.0% |
| !!! | ATTTCAATTTTGTAATGATT+TGG | + | 42303:4408-4427 | None:intergenic | 15.0% |
| !!! | CCAATTTTATGAAAATAATT+AGG | + | 42303:4146-4165 | None:intergenic | 15.0% |
| !!! | CCTAATTATTTTCATAAAAT+TGG | - | 42303:4143-4162 | MS.gene27444:intron | 15.0% |
| !!! | GATTTTTTGTAAAATAGTTT+TGG | + | 42303:5693-5712 | None:intergenic | 15.0% |
| !!! | TAAAATTTTAGACGTTTAAA+AGG | + | 42303:6763-6782 | None:intergenic | 15.0% |
| !!! | TTTCAATTTTGTAATGATTT+GGG | + | 42303:4407-4426 | None:intergenic | 15.0% |
| !! | AAATTGCTATAATTAACTGA+TGG | - | 42303:5764-5783 | MS.gene27444:intron | 20.0% |
| !! | ATCAGTTAATTATAGCAATT+TGG | + | 42303:5765-5784 | None:intergenic | 20.0% |
| !! | GTCAATATTCATAAATCATA+AGG | + | 42303:3441-3460 | None:intergenic | 20.0% |
| !! | TATTAGGACTGTTTAAAAAA+CGG | - | 42303:5830-5849 | MS.gene27444:intron | 20.0% |
| !! | TATTATTGGCATAAGAATTA+TGG | + | 42303:5940-5959 | None:intergenic | 20.0% |
| !! | TCATAAAATTGGATTGTAAA+GGG | - | 42303:4154-4173 | MS.gene27444:intron | 20.0% |
| !! | TTCATAAAATTGGATTGTAA+AGG | - | 42303:4153-4172 | MS.gene27444:intron | 20.0% |
| !! | TTCTAGATTCAAAATGTTAA+AGG | - | 42303:6001-6020 | MS.gene27444:intron | 20.0% |
| !!! | ACTGATATGTTACATTATTT+TGG | - | 42303:5581-5600 | MS.gene27444:intron | 20.0% |
| !!! | AGTAAAAGAAAGAATTTTAG+AGG | + | 42303:3929-3948 | None:intergenic | 20.0% |
| !!! | ATAATCAATTTTACACATCT+AGG | + | 42303:3528-3547 | None:intergenic | 20.0% |
| !!! | ATAATTGATTCTGATATGTT+TGG | - | 42303:3663-3682 | MS.gene27444:intron | 20.0% |
| !!! | TACATCTCTAAAATCAATTT+TGG | + | 42303:3644-3663 | None:intergenic | 20.0% |
| !!! | TTTCAAGTTAAATTCATATC+AGG | - | 42303:6459-6478 | MS.gene27444:intron | 20.0% |
| ! | AACTAAAAGTGAGTTATGTT+TGG | + | 42303:3815-3834 | None:intergenic | 25.0% |
| ! | AAGTTACTGAACACTAATTA+CGG | + | 42303:3484-3503 | None:intergenic | 25.0% |
| ! | ACTTAAAAGTCCTTATCTAA+AGG | + | 42303:5970-5989 | None:intergenic | 25.0% |
| ! | ACTTAGAAACATTATCATGA+AGG | + | 42303:6095-6114 | None:intergenic | 25.0% |
| ! | ATCTTAGGTATGAAAAACTT+TGG | - | 42303:5476-5495 | MS.gene27444:CDS | 25.0% |
| ! | CTATAATTAACTGATGGTTA+AGG | - | 42303:5770-5789 | MS.gene27444:intron | 25.0% |
| ! | CTTTCATAAACACTGTTTAA+AGG | + | 42303:4080-4099 | None:intergenic | 25.0% |
| ! | GACATAAAATACTTATTAGG+AGG | + | 42303:4669-4688 | None:intergenic | 25.0% |
| ! | TAATAGAGAAATTGCTCAAA+AGG | - | 42303:6235-6254 | MS.gene27444:intron | 25.0% |
| !! | CATAGACAGTATAATTTTCT+CGG | - | 42303:4436-4455 | MS.gene27444:intron | 25.0% |
| !! | TCTTGTATTATGCATAGTTT+TGG | - | 42303:4107-4126 | MS.gene27444:CDS | 25.0% |
| !!! | AACTTGTTTTAGTGTATGTT+TGG | - | 42303:3499-3518 | MS.gene27444:intron | 25.0% |
| !!! | AATTGTTTTATGATCCCTAT+AGG | + | 42303:5427-5446 | None:intergenic | 25.0% |
| !!! | ACTGTTTTAGATATTGTAGT+TGG | + | 42303:5278-5297 | None:intergenic | 25.0% |
| !!! | ATTATGCATAGTTTTGGAAT+TGG | - | 42303:4113-4132 | MS.gene27444:CDS | 25.0% |
| !!! | ATTGTTTTATGATCCCTATA+GGG | + | 42303:5426-5445 | None:intergenic | 25.0% |
| !!! | CAGTTTTGTTAGATTATGTT+TGG | + | 42303:4326-4345 | None:intergenic | 25.0% |
| !!! | CTGTTTTAGATATTGTAGTT+GGG | + | 42303:5277-5296 | None:intergenic | 25.0% |
| !!! | GACAAGTTTTTTACATAAAG+CGG | + | 42303:6165-6184 | None:intergenic | 25.0% |
| !!! | GATTTTGACTAAAATTGAGT+TGG | + | 42303:4014-4033 | None:intergenic | 25.0% |
| AAAAAAAGGTTCCATTTGCA+CGG | + | 42303:4772-4791 | None:intergenic | 30.0% | |
| AAACTGAACCGAATTGTTTA+TGG | - | 42303:5606-5625 | MS.gene27444:intron | 30.0% | |
| AACAGTCCTAATATTTGAGT+TGG | + | 42303:5823-5842 | None:intergenic | 30.0% | |
| AACTTCATGCTCAACATAAA+CGG | + | 42303:5394-5413 | None:intergenic | 30.0% | |
| AAGTTGAATGAAATCCCTAT+AGG | - | 42303:5409-5428 | MS.gene27444:CDS | 30.0% | |
| AATCAATTCTTGTGTGTGTT+TGG | + | 42303:3891-3910 | None:intergenic | 30.0% | |
| ACTGATCCAACTCAAATATT+AGG | - | 42303:5814-5833 | MS.gene27444:intron | 30.0% | |
| AGACTAACTAACTAACTAAC+TGG | - | 42303:4630-4649 | MS.gene27444:intron | 30.0% | |
| AGTTGAATGAAATCCCTATA+GGG | - | 42303:5410-5429 | MS.gene27444:CDS | 30.0% | |
| ATAAGGCAATGAAAGGTTTA+GGG | - | 42303:6832-6851 | MS.gene27444:intron | 30.0% | |
| ATACAAAGCAACATATTCTG+AGG | - | 42303:4898-4917 | MS.gene27444:intron | 30.0% | |
| ATAGTGCATACCTTTAGATA+AGG | - | 42303:5957-5976 | MS.gene27444:intron | 30.0% | |
| ATCACAAATTAGTCACGTTA+AGG | - | 42303:5506-5525 | MS.gene27444:intron | 30.0% | |
| CAACTCTGACATGTAAATAT+CGG | + | 42303:6700-6719 | None:intergenic | 30.0% | |
| CAGTTATACCATTCAAAGTT+TGG | - | 42303:5294-5313 | MS.gene27444:intron | 30.0% | |
| CGTTCAATTCAATGTTATGA+TGG | + | 42303:5018-5037 | None:intergenic | 30.0% | |
| GAAATCGAATTAAACACTTC+CGG | - | 42303:5333-5352 | MS.gene27444:intron | 30.0% | |
| GAACTATGAACAATCCTAAA+AGG | + | 42303:5537-5556 | None:intergenic | 30.0% | |
| GAATCAGGATGGAAAAAAAA+AGG | + | 42303:4786-4805 | None:intergenic | 30.0% | |
| GAGTTTATCATAGACTATTG+CGG | + | 42303:4277-4296 | None:intergenic | 30.0% | |
| GTAAGAGAGTAAAACTTGAA+TGG | - | 42303:4541-4560 | MS.gene27444:intron | 30.0% | |
| GTTAAATCTCAGTTACAGTA+CGG | - | 42303:5861-5880 | MS.gene27444:intron | 30.0% | |
| TAAAATTGGATTGTAAAGGG+TGG | - | 42303:4157-4176 | MS.gene27444:intron | 30.0% | |
| TAACATAATCAGCACAAGTT+AGG | + | 42303:3396-3415 | None:intergenic | 30.0% | |
| TAATGATAGCACACTCATAA+GGG | - | 42303:6857-6876 | MS.gene27444:intron | 30.0% | |
| TACCATATTATGACGAACTA+GGG | - | 42303:4497-4516 | MS.gene27444:intron | 30.0% | |
| TATAAGGCAATGAAAGGTTT+AGG | - | 42303:6831-6850 | MS.gene27444:intron | 30.0% | |
| TCACAAATTAGTCACGTTAA+GGG | - | 42303:5507-5526 | MS.gene27444:intron | 30.0% | |
| TCATCTTCACTTCAACTTTA+GGG | - | 42303:6579-6598 | MS.gene27444:intron | 30.0% | |
| TCGTATTATCATGACATGTA+TGG | - | 42303:6365-6384 | MS.gene27444:intron | 30.0% | |
| TGTAACATATCAGTTCGATT+TGG | + | 42303:5575-5594 | None:intergenic | 30.0% | |
| TTACCATATTATGACGAACT+AGG | - | 42303:4496-4515 | MS.gene27444:intron | 30.0% | |
| TTCATCTTCACTTCAACTTT+AGG | - | 42303:6578-6597 | MS.gene27444:intron | 30.0% | |
| TTGAATATAACCACATTTGC+CGG | + | 42303:6652-6671 | None:intergenic | 30.0% | |
| TTGTCCAAATATTCAGTGAA+CGG | - | 42303:6315-6334 | MS.gene27444:intron | 30.0% | |
| TTTAGATATTGTAGTTGGGA+TGG | + | 42303:5273-5292 | None:intergenic | 30.0% | |
| ! | ACACTGTTTAAAGGCTATTT+TGG | + | 42303:4071-4090 | None:intergenic | 30.0% |
| ! | ATAAGGTACCTTTAAAAGCA+CGG | + | 42303:3367-3386 | None:intergenic | 30.0% |
| ! | CTAAAGGTATGCACTATTAT+TGG | + | 42303:5954-5973 | None:intergenic | 30.0% |
| ! | TTGGACAAATGTCTTTTCAT+CGG | + | 42303:6303-6322 | None:intergenic | 30.0% |
| !! | ATGTTGCTTTGTATTCTTGT+TGG | + | 42303:4892-4911 | None:intergenic | 30.0% |
| !! | TCTATGGTTTTACAGGATTT+GGG | - | 42303:4804-4823 | MS.gene27444:intron | 30.0% |
| !! | TTCTATGGTTTTACAGGATT+TGG | - | 42303:4803-4822 | MS.gene27444:intron | 30.0% |
| !!! | ATTTTTGGTTTCACTTCTAG+AGG | - | 42303:3617-3636 | MS.gene27444:intron | 30.0% |
| !!! | TTTTTGGTTTCACTTCTAGA+GGG | - | 42303:3618-3637 | MS.gene27444:intron | 30.0% |
| !!! | TTTTTTCCATCCTGATTCTA+TGG | - | 42303:4788-4807 | MS.gene27444:intron | 30.0% |
| AAAACTGTCTCATGATTCCA+TGG | - | 42303:6066-6085 | MS.gene27444:intron | 35.0% | |
| AACTAGGGGAAAATGTAGTT+TGG | - | 42303:4512-4531 | MS.gene27444:intron | 35.0% | |
| AACTTGTCAAGATCTTGCTT+AGG | - | 42303:6177-6196 | MS.gene27444:intron | 35.0% | |
| AATTGCTCAAAAGGATGCAA+AGG | - | 42303:6244-6263 | MS.gene27444:intron | 35.0% | |
| ACCATATTATGACGAACTAG+GGG | - | 42303:4498-4517 | MS.gene27444:intron | 35.0% | |
| ACCTTTGCAAAATACTTTGC+TGG | + | 42303:6553-6572 | None:intergenic | 35.0% | |
| AGTGTCGTGTTTCATAGATT+AGG | - | 42303:6725-6744 | MS.gene27444:intron | 35.0% | |
| CAATTTCTCTATTAACCTCG+AGG | + | 42303:6229-6248 | None:intergenic | 35.0% | |
| CACAAGTTAGGAGAGAAATA+AGG | + | 42303:3384-3403 | None:intergenic | 35.0% | |
| CTAATGATAGCACACTCATA+AGG | - | 42303:6856-6875 | MS.gene27444:intron | 35.0% | |
| CTATGAACAATCCTAAAAGG+AGG | + | 42303:5534-5553 | None:intergenic | 35.0% | |
| GATAAACGCCAAACTTTGAA+TGG | + | 42303:5305-5324 | None:intergenic | 35.0% | |
| GATTGTTCATAGTTCGATTC+AGG | - | 42303:5542-5561 | MS.gene27444:intron | 35.0% | |
| GGATATATAGAGCATGACTT+AGG | - | 42303:4233-4252 | MS.gene27444:intron | 35.0% | |
| GTAAAACCATAGAATCAGGA+TGG | + | 42303:4797-4816 | None:intergenic | 35.0% | |
| GTAATGATATTCCGTGCAAA+TGG | - | 42303:4758-4777 | MS.gene27444:intron | 35.0% | |
| GTCATGATAATACGAACTGA+CGG | + | 42303:6360-6379 | None:intergenic | 35.0% | |
| GTGTTGTATAAGGCAATGAA+AGG | - | 42303:6825-6844 | MS.gene27444:intron | 35.0% | |
| GTTATGCGGTTATAAAGTGA+GGG | + | 42303:4369-4388 | None:intergenic | 35.0% | |
| TATATAGAGCATGACTTAGG+TGG | - | 42303:4236-4255 | MS.gene27444:intron | 35.0% | |
| TCATAAGGGTCATTGTAACA+AGG | - | 42303:6871-6890 | MS.gene27444:intron | 35.0% | |
| TCCTGTAAAACCATAGAATC+AGG | + | 42303:4801-4820 | None:intergenic | 35.0% | |
| TGTACTTGTGTGTGAATCTT+AGG | - | 42303:5461-5480 | MS.gene27444:CDS | 35.0% | |
| TTATGCGGTTATAAAGTGAG+GGG | + | 42303:4368-4387 | None:intergenic | 35.0% | |
| TTGCTTTGTATTCTTGTTGG+AGG | + | 42303:4889-4908 | None:intergenic | 35.0% | |
| TTTGTATTCTTGTTGGAGGT+AGG | + | 42303:4885-4904 | None:intergenic | 35.0% | |
| ! | CAACTTTACCGTGCTTTTAA+AGG | - | 42303:3356-3375 | MS.gene27444:CDS | 35.0% |
| ! | CACACAAGAATTGATTCTTC+AGG | - | 42303:3895-3914 | MS.gene27444:intron | 35.0% |
| ! | CTTGAATTACTAGCTTCAAG+TGG | + | 42303:3731-3750 | None:intergenic | 35.0% |
| ! | GATTTTCTTCTCGCACTTTT+GGG | - | 42303:6993-7012 | MS.gene27444:CDS | 35.0% |
| !! | ATTTGAGTTGGATCAGTGTT+TGG | + | 42303:5811-5830 | None:intergenic | 35.0% |
| !! | TAGGGAAAGTACTTCCTTTA+GGG | - | 42303:6597-6616 | MS.gene27444:intron | 35.0% |
| !! | TCCAGCAAAGTATTTTGCAA+AGG | - | 42303:6549-6568 | MS.gene27444:intron | 35.0% |
| !! | TCCTGATTCTATGGTTTTAC+AGG | - | 42303:4797-4816 | MS.gene27444:intron | 35.0% |
| !! | TTAGGGAAAGTACTTCCTTT+AGG | - | 42303:6596-6615 | MS.gene27444:intron | 35.0% |
| AAAGGTTCTGTACAAAGCTG+GGG | - | 42303:6262-6281 | MS.gene27444:intron | 40.0% | |
| AAGTGGAATCTCGATTCTTG+AGG | + | 42303:3714-3733 | None:intergenic | 40.0% | |
| ACCAGACTGGTATAAAGCTT+AGG | - | 42303:5639-5658 | MS.gene27444:intron | 40.0% | |
| AGAAATCATTAGGAAGTCGC+TGG | - | 42303:5197-5216 | MS.gene27444:intron | 40.0% | |
| ATCAGACTGCAGTTCTACTT+TGG | - | 42303:5148-5167 | MS.gene27444:CDS | 40.0% | |
| ATTTGGGTATAGCTGAACAG+CGG | + | 42303:4391-4410 | None:intergenic | 40.0% | |
| CAAAGGTTCTGTACAAAGCT+GGG | - | 42303:6261-6280 | MS.gene27444:intron | 40.0% | |
| CAAGGAACAGCTAGAAACTA+TGG | + | 42303:6037-6056 | None:intergenic | 40.0% | |
| CACGTGATGCAGAAATCATT+AGG | - | 42303:5187-5206 | MS.gene27444:intron | 40.0% | |
| CATTATCATGAAGGCAACCA+TGG | + | 42303:6086-6105 | None:intergenic | 40.0% | |
| GCTATCGAAACGCTTAGTTT+CGG | - | 42303:4922-4941 | MS.gene27444:intron | 40.0% | |
| GGAGCTGAAAGGAAAATTAG+AGG | - | 42303:4943-4962 | MS.gene27444:intron | 40.0% | |
| GGGACGAACCATAAACAATT+CGG | + | 42303:5617-5636 | None:intergenic | 40.0% | |
| GGTATAAAGCTTAGGTGCAT+TGG | - | 42303:5647-5666 | MS.gene27444:intron | 40.0% | |
| GGTTATGCGGTTATAAAGTG+AGG | + | 42303:4370-4389 | None:intergenic | 40.0% | |
| GTATGGTCACTCATTGAAGA+AGG | - | 42303:6382-6401 | MS.gene27444:intron | 40.0% | |
| GTTCATAGTTCGATTCAGGA+AGG | - | 42303:5546-5565 | MS.gene27444:intron | 40.0% | |
| TCCCCTAGTTCGTCATAATA+TGG | + | 42303:4502-4521 | None:intergenic | 40.0% | |
| TGAAACATCAGGCAACTACA+GGG | - | 42303:6971-6990 | MS.gene27444:CDS | 40.0% | |
| TGCTCCGTTCACTGAATATT+TGG | + | 42303:6322-6341 | None:intergenic | 40.0% | |
| TGCTCTATATATCCAGTCCT+AGG | + | 42303:4227-4246 | None:intergenic | 40.0% | |
| ! | AAAAGCACGGTAAAGTTGCA+TGG | + | 42303:3354-3373 | None:intergenic | 40.0% |
| ! | AATGAAGCATCCGGGAATTT+CGG | - | 42303:6490-6509 | MS.gene27444:intron | 40.0% |
| ! | ACCTAAGCTTTATACCAGTC+TGG | + | 42303:5643-5662 | None:intergenic | 40.0% |
| ! | CAGTAAAGAATGAAGCATCC+GGG | - | 42303:6482-6501 | MS.gene27444:intron | 40.0% |
| ! | GCAGTAAAGAATGAAGCATC+CGG | - | 42303:6481-6500 | MS.gene27444:intron | 40.0% |
| ! | GGATTTTCTTCTCGCACTTT+TGG | - | 42303:6992-7011 | MS.gene27444:CDS | 40.0% |
| ! | TTTTTCGTAGCGGTTCAGTT+TGG | - | 42303:5885-5904 | MS.gene27444:intron | 40.0% |
| !! | AAAACTGACTCGAGATGTGA+GGG | - | 42303:4339-4358 | MS.gene27444:intron | 40.0% |
| !! | AGGGAAAGTACTTCCTTTAG+GGG | - | 42303:6598-6617 | MS.gene27444:intron | 40.0% |
| !! | AGTTTCTAGCTGTTCCTTGT+TGG | - | 42303:6038-6057 | MS.gene27444:intron | 40.0% |
| !! | GTTTCTAGCTGTTCCTTGTT+GGG | - | 42303:6039-6058 | MS.gene27444:intron | 40.0% |
| !!! | ACAGTACGGTTTTTTCGTAG+CGG | - | 42303:5875-5894 | MS.gene27444:intron | 40.0% |
| AAAGCTGGGGAGAAGAAACT+GGG | - | 42303:6275-6294 | MS.gene27444:intron | 45.0% | |
| ACGCGAACATATTACTTCCG+TGG | + | 42303:5247-5266 | None:intergenic | 45.0% | |
| AGTTGCATGGCATCATCTCT+AGG | + | 42303:3341-3360 | None:intergenic | 45.0% | |
| ATAGCTGAACAGCGGTTATG+CGG | + | 42303:4383-4402 | None:intergenic | 45.0% | |
| CACTTCCGGAGATCATCAAA+AGG | - | 42303:5347-5366 | MS.gene27444:intron | 45.0% | |
| CTGAAACATCAGGCAACTAC+AGG | - | 42303:6970-6989 | MS.gene27444:CDS | 45.0% | |
| CTTATACAACACCTGCATCG+AGG | + | 42303:6817-6836 | None:intergenic | 45.0% | |
| GCAAAGGTTCTGTACAAAGC+TGG | - | 42303:6260-6279 | MS.gene27444:intron | 45.0% | |
| GCTTTATACCAGTCTGGTCT+GGG | + | 42303:5637-5656 | None:intergenic | 45.0% | |
| TATATCCAGTCCTAGGCATG+AGG | + | 42303:4220-4239 | None:intergenic | 45.0% | |
| TTCATAGCATGCGATGTCAC+CGG | - | 42303:6630-6649 | MS.gene27444:intron | 45.0% | |
| ! | ACGTTAAGGGTCCTCCTTTT+AGG | - | 42303:5520-5539 | MS.gene27444:intron | 45.0% |
| ! | AGCTTTATACCAGTCTGGTC+TGG | + | 42303:5638-5657 | None:intergenic | 45.0% |
| ! | ATGGCATCATCTCTAGGAGA+AGG | + | 42303:3335-3354 | None:intergenic | 45.0% |
| ! | CTCGATGCAGGTGTTGTATA+AGG | - | 42303:6815-6834 | MS.gene27444:intron | 45.0% |
| ! | TCTCTAGGAGAAGGAGGAAT+TGG | + | 42303:3326-3345 | None:intergenic | 45.0% |
| !! | CAAAACTGACTCGAGATGTG+AGG | - | 42303:4338-4357 | MS.gene27444:intron | 45.0% |
| !! | CCTCACCTTTTGATGATCTC+CGG | + | 42303:5355-5374 | None:intergenic | 45.0% |
| !! | GAGGAAAGCGGGTTGAATAA+TGG | + | 42303:4201-4220 | None:intergenic | 45.0% |
| !! | GCAGTTCACTCTGAAACATC+AGG | - | 42303:6960-6979 | MS.gene27444:CDS | 45.0% |
| AAGTGCGAGACCGAAATTCC+CGG | + | 42303:6503-6522 | None:intergenic | 50.0% | |
| AGTCCTAGGCATGAGGAAAG+CGG | + | 42303:4213-4232 | None:intergenic | 50.0% | |
| ATTTCTGCATCACGTGCTGC+AGG | + | 42303:5183-5202 | None:intergenic | 50.0% | |
| CAAAGCTGGGGAGAAGAAAC+TGG | - | 42303:6274-6293 | MS.gene27444:intron | 50.0% | |
| CCGGAGATCATCAAAAGGTG+AGG | - | 42303:5352-5371 | MS.gene27444:intron | 50.0% | |
| CGCTTAGTTTCGGAGCTGAA+AGG | - | 42303:4932-4951 | MS.gene27444:intron | 50.0% | |
| CTAGGAGAAGGAGGAATTGG+AGG | + | 42303:3323-3342 | None:intergenic | 50.0% | |
| TGAAGCACAGACACCCCTAA+AGG | + | 42303:6614-6633 | None:intergenic | 50.0% | |
| TGTGGACAGAAGCCTTGAAG+CGG | - | 42303:5221-5240 | MS.gene27444:intron | 50.0% | |
| TTTCTGCATCACGTGCTGCA+GGG | + | 42303:5182-5201 | None:intergenic | 50.0% | |
| ! | CATTAGGAAGTCGCTGGTTG+TGG | - | 42303:5203-5222 | MS.gene27444:intron | 50.0% |
| ! | GACAGTTTTTGCGCCCAACA+AGG | + | 42303:6055-6074 | None:intergenic | 50.0% |
| ! | GCATCATCTCTAGGAGAAGG+AGG | + | 42303:3332-3351 | None:intergenic | 50.0% |
| ! | TCACACTTTTGCCTCGATGC+AGG | - | 42303:6803-6822 | MS.gene27444:intron | 50.0% |
| !! | GCTTAGGTGCATTGGTTCAG+TGG | - | 42303:5655-5674 | MS.gene27444:intron | 50.0% |
| AACCCGCTTTCCTCATGCCT+AGG | - | 42303:4207-4226 | MS.gene27444:intron | 55.0% | |
| GCTTTCCTCATGCCTAGGAC+TGG | - | 42303:4212-4231 | MS.gene27444:intron | 55.0% | |
| GTCCTAGGCATGAGGAAAGC+GGG | + | 42303:4212-4231 | None:intergenic | 55.0% | |
| TGCGATGTCACCGGCAAATG+TGG | - | 42303:6639-6658 | MS.gene27444:intron | 55.0% | |
| TTAACCACCCCTCGACACGA+AGG | - | 42303:6203-6222 | MS.gene27444:intron | 55.0% | |
| TTACTTCCGTGGCCGCTTCA+AGG | + | 42303:5236-5255 | None:intergenic | 55.0% | |
| !! | ACTGACTCGAGATGTGAGGG+TGG | - | 42303:4342-4361 | MS.gene27444:intron | 55.0% |
| CAGAAGCCTTGAAGCGGCCA+CGG | - | 42303:5227-5246 | MS.gene27444:intron | 60.0% | |
| TGAACGGAGCAGCGCGCATT+TGG | - | 42303:6331-6350 | MS.gene27444:intron | 60.0% | |
| TGGTTCGTCCCAGACCAGAC+TGG | - | 42303:5626-5645 | MS.gene27444:intron | 60.0% | |
| ACCTCGAGGCCTTCGTGTCG+AGG | + | 42303:6215-6234 | None:intergenic | 65.0% | |
| CCTCGAGGCCTTCGTGTCGA+GGG | + | 42303:6214-6233 | None:intergenic | 65.0% | |
| CTCGAGGCCTTCGTGTCGAG+GGG | + | 42303:6213-6232 | None:intergenic | 65.0% | |
| GCATCACGTGCTGCAGGGTC+AGG | + | 42303:5177-5196 | None:intergenic | 65.0% | |
| CCCTCGACACGAAGGCCTCG+AGG | - | 42303:6211-6230 | MS.gene27444:intron | 70.0% | |
| GAGGCCTTCGTGTCGAGGGG+TGG | + | 42303:6210-6229 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 42303 | gene | 3302 | 7028 | 3302 | ID=MS.gene27444 |
| 42303 | mRNA | 3302 | 7028 | 3302 | ID=MS.gene27444.t1;Parent=MS.gene27444 |
| 42303 | exon | 6953 | 7028 | 6953 | ID=MS.gene27444.t1.exon1;Parent=MS.gene27444.t1 |
| 42303 | CDS | 6953 | 7028 | 6953 | ID=cds.MS.gene27444.t1;Parent=MS.gene27444.t1 |
| 42303 | exon | 5366 | 5511 | 5366 | ID=MS.gene27444.t1.exon2;Parent=MS.gene27444.t1 |
| 42303 | CDS | 5366 | 5511 | 5366 | ID=cds.MS.gene27444.t1;Parent=MS.gene27444.t1 |
| 42303 | exon | 4962 | 5177 | 4962 | ID=MS.gene27444.t1.exon3;Parent=MS.gene27444.t1 |
| 42303 | CDS | 4962 | 5177 | 4962 | ID=cds.MS.gene27444.t1;Parent=MS.gene27444.t1 |
| 42303 | exon | 3927 | 4142 | 3927 | ID=MS.gene27444.t1.exon4;Parent=MS.gene27444.t1 |
| 42303 | CDS | 3927 | 4142 | 3927 | ID=cds.MS.gene27444.t1;Parent=MS.gene27444.t1 |
| 42303 | exon | 3760 | 3849 | 3760 | ID=MS.gene27444.t1.exon5;Parent=MS.gene27444.t1 |
| 42303 | CDS | 3760 | 3849 | 3760 | ID=cds.MS.gene27444.t1;Parent=MS.gene27444.t1 |
| 42303 | exon | 3302 | 3505 | 3302 | ID=MS.gene27444.t1.exon6;Parent=MS.gene27444.t1 |
| 42303 | CDS | 3302 | 3505 | 3302 | ID=cds.MS.gene27444.t1;Parent=MS.gene27444.t1 |
| Gene Sequence |
| Protein sequence |
