Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27842.t1 | XP_003629838.2 | 99.6 | 229 | 1 | 0 | 1 | 229 | 1 | 229 | 3.10E-126 | 461.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27842.t1 | Q9H2W6 | 39.3 | 135 | 70 | 4 | 86 | 215 | 136 | 263 | 5.5e-15 | 82.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27842.t1 | G7L791 | 99.6 | 229 | 1 | 0 | 1 | 229 | 1 | 229 | 2.2e-126 | 461.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene27842 | MS.gene043435 | PPI |
| MS.gene27842 | MS.gene60861 | PPI |
| MS.gene27842 | MS.gene005399 | PPI |
| MS.gene27842 | MS.gene001687 | PPI |
| MS.gene27842 | MS.gene005865 | PPI |
| MS.gene27842 | MS.gene066059 | PPI |
| MS.gene27842 | MS.gene21110 | PPI |
| MS.gene27842 | MS.gene036564 | PPI |
| MS.gene27842 | MS.gene31468 | PPI |
| MS.gene27842 | MS.gene026968 | PPI |
| MS.gene27842 | MS.gene21111 | PPI |
| MS.gene27842 | MS.gene34167 | PPI |
| MS.gene27842 | MS.gene028903 | PPI |
| MS.gene27842 | MS.gene21227 | PPI |
| MS.gene27842 | MS.gene055808 | PPI |
| MS.gene27842 | MS.gene035256 | PPI |
| MS.gene27842 | MS.gene20938 | PPI |
| MS.gene27842 | MS.gene60589 | PPI |
| MS.gene27842 | MS.gene82915 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27842.t1 | MTR_8g087440 | 99.563 | 229 | 1 | 0 | 1 | 229 | 1 | 229 | 7.69e-172 | 472 |
| MS.gene27842.t1 | MTR_8g028485 | 96.943 | 229 | 7 | 0 | 1 | 229 | 1 | 229 | 9.85e-168 | 461 |
| MS.gene27842.t1 | MTR_7g117435 | 85.821 | 134 | 19 | 0 | 51 | 184 | 4 | 137 | 5.58e-78 | 231 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27842.t1 | AT1G14620 | 72.889 | 225 | 60 | 1 | 6 | 229 | 9 | 233 | 3.55e-123 | 349 |
| MS.gene27842.t1 | AT1G14620 | 72.472 | 178 | 48 | 1 | 6 | 182 | 9 | 186 | 1.68e-92 | 271 |
Find 43 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTCTTTGGTGATGCTTA+TGG | 0.132920 | 4.3:-13454647 | MS.gene27842:CDS |
| ATAAACATTAGGGTCAATTT+TGG | 0.146402 | 4.3:+13456814 | None:intergenic |
| TTCTCTTTGGTGATGCTTAT+GGG | 0.201628 | 4.3:-13454646 | MS.gene27842:CDS |
| CTTTAGGCTGAACAACAATA+TGG | 0.250918 | 4.3:+13454184 | None:intergenic |
| GATCCTGTCTGCTCTTCTTT+AGG | 0.268390 | 4.3:+13454168 | None:intergenic |
| TCTTGAAAAGCATAAACATT+AGG | 0.296449 | 4.3:+13456803 | None:intergenic |
| AGACTTTACCTTCTTCTCTT+TGG | 0.302982 | 4.3:-13454659 | MS.gene27842:CDS |
| CAGTACCAGCTCTGAGAAAA+TGG | 0.316816 | 4.3:-13456876 | MS.gene27842:CDS |
| CTTGAAAAGCATAAACATTA+GGG | 0.335207 | 4.3:+13456804 | None:intergenic |
| TCTGCCTTGAAATCAGTCTT+AGG | 0.355740 | 4.3:-13454249 | MS.gene27842:CDS |
| GCTTCGGTGATTCGCGGTGC+TGG | 0.381981 | 4.3:+13455423 | None:intergenic |
| ATCTCCTAAGACTGATTTCA+AGG | 0.411980 | 4.3:+13454245 | None:intergenic |
| GCAAATGTGAGGACTTTGTT+TGG | 0.413949 | 4.3:-13453845 | MS.gene27842:CDS |
| CAAATGTGAGGACTTTGTTT+GGG | 0.420934 | 4.3:-13453844 | MS.gene27842:CDS |
| GGTGACTAAGGATGAATTGA+TGG | 0.429874 | 4.3:-13453823 | MS.gene27842:CDS |
| CAGGATGAAGATGATGTCAT+TGG | 0.454517 | 4.3:-13456927 | None:intergenic |
| CCTCTTTAGGTCACTACAAA+GGG | 0.467960 | 4.3:-13454693 | MS.gene27842:intron |
| GGACTTTGTTTGGGTGACTA+AGG | 0.476258 | 4.3:-13453835 | MS.gene27842:CDS |
| TTTCACTGGCTAGGTTTCGA+TGG | 0.485464 | 4.3:-13455706 | MS.gene27842:intron |
| TTTAGGCTGAACAACAATAT+GGG | 0.490540 | 4.3:+13454185 | None:intergenic |
| TGCCACACAGGCTTTCCACT+TGG | 0.491497 | 4.3:+13454620 | None:intergenic |
| TGAAGATGATGTCATTGGTT+CGG | 0.499816 | 4.3:-13456922 | MS.gene27842:CDS |
| TCTCTTTGGTGATGCTTATG+GGG | 0.506698 | 4.3:-13454645 | MS.gene27842:CDS |
| AAGCATCACCAAAGAGAAGA+AGG | 0.518933 | 4.3:+13454651 | None:intergenic |
| GATCTGTCTAGAAATTCATC+AGG | 0.521123 | 4.3:+13455659 | None:intergenic |
| GCCTCTTTAGGTCACTACAA+AGG | 0.536519 | 4.3:-13454694 | MS.gene27842:intron |
| CGGCCACTCTTGATGAGGCG+AGG | 0.556081 | 4.3:-13456902 | MS.gene27842:CDS |
| CAGCCTAAAGAAGAGCAGAC+AGG | 0.565138 | 4.3:-13454171 | MS.gene27842:CDS |
| CACTGGCTAGGTTTCGATGG+CGG | 0.565281 | 4.3:-13455703 | MS.gene27842:intron |
| TGGTTCGGCCACTCTTGATG+AGG | 0.568234 | 4.3:-13456907 | MS.gene27842:CDS |
| TTGTCTGCTTCGGTGATTCG+CGG | 0.572285 | 4.3:+13455417 | None:intergenic |
| ATCAGAGGATACCATGCGTA+AGG | 0.591397 | 4.3:-13454576 | MS.gene27842:intron |
| TTCTAGACAGATCCGATGCA+AGG | 0.596915 | 4.3:-13455649 | MS.gene27842:intron |
| CTCCAAGTGGAAAGCCTGTG+TGG | 0.603277 | 4.3:-13454622 | MS.gene27842:CDS |
| TGAACAACAATATGGGCCAT+CGG | 0.626927 | 4.3:+13454192 | None:intergenic |
| GCTGTTTGAGAGATTGCCTG+TGG | 0.631922 | 4.3:-13456843 | MS.gene27842:CDS |
| CAGACAAACAAAATGATCGA+AGG | 0.632787 | 4.3:-13455401 | MS.gene27842:intron |
| TAAGTACCCATACCTTGCAT+CGG | 0.633346 | 4.3:+13455637 | None:intergenic |
| AAGAATGTTCACCTTACGCA+TGG | 0.635771 | 4.3:+13454565 | None:intergenic |
| AATCCTCGCCTCATCAAGAG+TGG | 0.640945 | 4.3:+13456899 | None:intergenic |
| GTTCGACATTGGCAAATGTG+AGG | 0.661270 | 4.3:-13453856 | MS.gene27842:CDS |
| GATGCTTATGGGGCTCCAAG+TGG | 0.683285 | 4.3:-13454635 | MS.gene27842:CDS |
| CAATCTCTCAAACAGCACAG+AGG | 0.749554 | 4.3:+13456850 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTATAACTAAATTTTTAT+GGG | - | chr4.3:13454966-13454985 | MS.gene27842:intron | 10.0% |
| !!! | TCTTTAAAAAAAATTATCAA+TGG | + | chr4.3:13455927-13455946 | None:intergenic | 10.0% |
| !!! | TGCAATTTTTTTTATAAAAA+AGG | + | chr4.3:13456417-13456436 | None:intergenic | 10.0% |
| !!! | TTTATAACTAAATTTTTATG+GGG | - | chr4.3:13454967-13454986 | MS.gene27842:intron | 10.0% |
| !!! | AGTATTTGTATTTTACAAAT+TGG | + | chr4.3:13454614-13454633 | None:intergenic | 15.0% |
| !!! | GGTTTATAACTAAATTTTTA+TGG | - | chr4.3:13454965-13454984 | MS.gene27842:intron | 15.0% |
| !!! | TTTCAATATGTTATTTCTAT+CGG | - | chr4.3:13456619-13456638 | MS.gene27842:intron | 15.0% |
| !! | AAATGTTTCATTTCAATTTC+TGG | - | chr4.3:13455363-13455382 | MS.gene27842:intron | 20.0% |
| !! | AGAACAAGTTAATAATTCAT+TGG | + | chr4.3:13455468-13455487 | None:intergenic | 20.0% |
| !!! | ATCAAAAGTAAAATGGATTT+CGG | - | chr4.3:13454002-13454021 | MS.gene27842:intron | 20.0% |
| !!! | CTTTCAAATACATATTTTGT+CGG | - | chr4.3:13456474-13456493 | MS.gene27842:intron | 20.0% |
| !!! | TAAAAGCATCAAAAGTAAAA+TGG | - | chr4.3:13453995-13454014 | MS.gene27842:intron | 20.0% |
| !!! | TCTTTTCTTCTTTTTTTTGA+AGG | - | chr4.3:13455531-13455550 | MS.gene27842:intron | 20.0% |
| !!! | TGTCCACATTTTTTAAAAAA+GGG | - | chr4.3:13454692-13454711 | MS.gene27842:intron | 20.0% |
| !!! | TGTTTAAGTTATGAAAGAAA+TGG | - | chr4.3:13455161-13455180 | MS.gene27842:intron | 20.0% |
| !!! | TTACCCTTTTTTAAAAAATG+TGG | + | chr4.3:13454698-13454717 | None:intergenic | 20.0% |
| !!! | TTCTATCATAAACCATATTT+TGG | + | chr4.3:13454501-13454520 | None:intergenic | 20.0% |
| !!! | TTGTCCACATTTTTTAAAAA+AGG | - | chr4.3:13454691-13454710 | MS.gene27842:intron | 20.0% |
| ! | AACATTGATCAAAGTGATTA+TGG | - | chr4.3:13454095-13454114 | MS.gene27842:intron | 25.0% |
| ! | AAGATATAGGAAATAAGAAG+GGG | + | chr4.3:13456167-13456186 | None:intergenic | 25.0% |
| ! | ACACGATCAAAAAACAATAA+AGG | + | chr4.3:13455646-13455665 | None:intergenic | 25.0% |
| ! | AGAAAAAGATGGAAAAAATG+AGG | - | chr4.3:13454790-13454809 | MS.gene27842:intron | 25.0% |
| ! | AGAATTTCTGACAAAAGATT+TGG | + | chr4.3:13456789-13456808 | None:intergenic | 25.0% |
| ! | AGATTGTCATCAGATATTTA+AGG | - | chr4.3:13455706-13455725 | MS.gene27842:intron | 25.0% |
| ! | AGTTTGTCAAAAGAAAAAGA+TGG | - | chr4.3:13454779-13454798 | MS.gene27842:intron | 25.0% |
| ! | ATGAAAATTGTTTACTTTCC+AGG | - | chr4.3:13455220-13455239 | MS.gene27842:intron | 25.0% |
| ! | ATTATCAATGGTAAAGCAAA+TGG | + | chr4.3:13455915-13455934 | None:intergenic | 25.0% |
| ! | GAAGATATAGGAAATAAGAA+GGG | + | chr4.3:13456168-13456187 | None:intergenic | 25.0% |
| ! | GAATTTCTGACAAAAGATTT+GGG | + | chr4.3:13456788-13456807 | None:intergenic | 25.0% |
| ! | TAATGAATTCGACCAAAATA+TGG | - | chr4.3:13454486-13454505 | MS.gene27842:intron | 25.0% |
| ! | TCTATTATTATCTAAGAGAC+AGG | + | chr4.3:13455844-13455863 | None:intergenic | 25.0% |
| ! | TGAAAATTGTTTACTTTCCA+GGG | - | chr4.3:13455221-13455240 | MS.gene27842:intron | 25.0% |
| ! | TGAGAAATATATCAATGTGA+GGG | - | chr4.3:13455799-13455818 | MS.gene27842:intron | 25.0% |
| ! | TGCTGTTAATATTACATAGT+TGG | - | chr4.3:13454836-13454855 | MS.gene27842:intron | 25.0% |
| ! | TTTGTCTATTCAGTGAAATT+TGG | - | chr4.3:13454667-13454686 | MS.gene27842:CDS | 25.0% |
| !! | AGAAAAAGTATATGAATCAG+AGG | - | chr4.3:13456105-13456124 | MS.gene27842:intron | 25.0% |
| !! | ATAAACATTAGGGTCAATTT+TGG | + | chr4.3:13453885-13453904 | None:intergenic | 25.0% |
| !! | CTTGAAAAGCATAAACATTA+GGG | + | chr4.3:13453895-13453914 | None:intergenic | 25.0% |
| !! | TAAACATTAGGGTCAATTTT+GGG | + | chr4.3:13453884-13453903 | None:intergenic | 25.0% |
| !! | TCTTGAAAAGCATAAACATT+AGG | + | chr4.3:13453896-13453915 | None:intergenic | 25.0% |
| !!! | ATAAGTCAGAAGTATTGAAA+AGG | + | chr4.3:13456723-13456742 | None:intergenic | 25.0% |
| !!! | ATCTTTTAAGGTATGTTTGT+AGG | - | chr4.3:13456554-13456573 | MS.gene27842:intron | 25.0% |
| !!! | GTGTTTTAGCTTTGAAATAT+TGG | - | chr4.3:13455662-13455681 | MS.gene27842:CDS | 25.0% |
| !!! | TCTGATTCATATACTTTTTC+TGG | + | chr4.3:13456106-13456125 | None:intergenic | 25.0% |
| !!! | TTCTTCTTTTTTTTGAAGGA+AGG | - | chr4.3:13455535-13455554 | MS.gene27842:intron | 25.0% |
| !!! | TTTCTTTCTCTTTTCTAAGA+TGG | - | chr4.3:13454748-13454767 | MS.gene27842:intron | 25.0% |
| !!! | TTTTCTGAAAATGACTTTGT+AGG | - | chr4.3:13456654-13456673 | MS.gene27842:intron | 25.0% |
| AAAATAGACTTAGGTGGTTT+GGG | - | chr4.3:13454360-13454379 | MS.gene27842:intron | 30.0% | |
| AAAATTGTTTACTTTCCAGG+GGG | - | chr4.3:13455223-13455242 | MS.gene27842:intron | 30.0% | |
| AAATACCACACCAAAGAAAA+AGG | + | chr4.3:13455568-13455587 | None:intergenic | 30.0% | |
| AAATGATCAGTCTGCTAAAT+TGG | + | chr4.3:13455327-13455346 | None:intergenic | 30.0% | |
| ACTACAAATGTTCTTAAGCA+AGG | - | chr4.3:13455588-13455607 | MS.gene27842:intron | 30.0% | |
| AGAGACATGAAAACCTAATT+AGG | - | chr4.3:13455889-13455908 | MS.gene27842:intron | 30.0% | |
| ATGAAAATATTAGAGAGTCG+AGG | - | chr4.3:13454310-13454329 | MS.gene27842:intron | 30.0% | |
| ATTGATCAAAGTGATTATGG+TGG | - | chr4.3:13454098-13454117 | MS.gene27842:intron | 30.0% | |
| ATTTCACTGAATAGACAAAC+TGG | + | chr4.3:13454666-13454685 | None:intergenic | 30.0% | |
| CACAACCAAACAAATTGAAA+AGG | + | chr4.3:13456680-13456699 | None:intergenic | 30.0% | |
| CATGATAGTAGATGAAAAGA+AGG | + | chr4.3:13455203-13455222 | None:intergenic | 30.0% | |
| CTATAGATATATCATCGCTA+AGG | + | chr4.3:13456210-13456229 | None:intergenic | 30.0% | |
| CTGAGAAATATATCAATGTG+AGG | - | chr4.3:13455798-13455817 | MS.gene27842:intron | 30.0% | |
| GAAAATTGTTTACTTTCCAG+GGG | - | chr4.3:13455222-13455241 | MS.gene27842:intron | 30.0% | |
| GGAAGATATAGGAAATAAGA+AGG | + | chr4.3:13456169-13456188 | None:intergenic | 30.0% | |
| GTTGTTGCTAATACAATTTC+AGG | - | chr4.3:13454579-13454598 | MS.gene27842:CDS | 30.0% | |
| TGTTGTACTTACTGATATTG+TGG | - | chr4.3:13454934-13454953 | MS.gene27842:intron | 30.0% | |
| TTAACAACACTGGAAGATAT+AGG | + | chr4.3:13456180-13456199 | None:intergenic | 30.0% | |
| TTGCAGATTACAGAAAATAG+TGG | + | chr4.3:13456362-13456381 | None:intergenic | 30.0% | |
| TTTAGGCTGAACAACAATAT+GGG | + | chr4.3:13456514-13456533 | None:intergenic | 30.0% | |
| ! | AAATTTTTATGGGGTTTCAC+TGG | - | chr4.3:13454976-13454995 | MS.gene27842:intron | 30.0% |
| ! | AGGAAAATGTCCTTTTTCTT+TGG | - | chr4.3:13455555-13455574 | MS.gene27842:intron | 30.0% |
| ! | AGTAAAATGGATTTCGGTTT+CGG | - | chr4.3:13454008-13454027 | MS.gene27842:intron | 30.0% |
| ! | TAATTTTACTATGCTCTGCT+TGG | - | chr4.3:13453957-13453976 | MS.gene27842:intron | 30.0% |
| !! | ATCATTTTGTTTGTCTGCTT+CGG | + | chr4.3:13455292-13455311 | None:intergenic | 30.0% |
| !! | TTATTTCTATCGGTATGTGT+CGG | - | chr4.3:13456629-13456648 | MS.gene27842:intron | 30.0% |
| !!! | AGTATTGAAAAGGCTAGTTT+TGG | + | chr4.3:13456713-13456732 | None:intergenic | 30.0% |
| AAATATATCAATGTGAGGGC+AGG | - | chr4.3:13455803-13455822 | MS.gene27842:intron | 35.0% | |
| AACTTCAATCTACTGTTGGA+AGG | - | chr4.3:13456588-13456607 | MS.gene27842:intron | 35.0% | |
| AGACTTTACCTTCTTCTCTT+TGG | - | chr4.3:13456037-13456056 | MS.gene27842:intron | 35.0% | |
| AGTATGGAGAGTAGATCAAA+TGG | - | chr4.3:13454412-13454431 | MS.gene27842:intron | 35.0% | |
| AGTGATTATGGTGGTTGAAA+TGG | - | chr4.3:13454107-13454126 | MS.gene27842:intron | 35.0% | |
| ATGGGTACTTAAGTAAGAGT+TGG | - | chr4.3:13455071-13455090 | MS.gene27842:intron | 35.0% | |
| CAGACAAACAAAATGATCGA+AGG | - | chr4.3:13455295-13455314 | MS.gene27842:intron | 35.0% | |
| CTCCATACTACAGAATCTAT+AGG | + | chr4.3:13454401-13454420 | None:intergenic | 35.0% | |
| CTCTTATTACTTGCCTCTTT+AGG | - | chr4.3:13455990-13456009 | MS.gene27842:intron | 35.0% | |
| CTGACAAAAGATTTGGGTAA+AGG | + | chr4.3:13456782-13456801 | None:intergenic | 35.0% | |
| CTTTAGGCTGAACAACAATA+TGG | + | chr4.3:13456515-13456534 | None:intergenic | 35.0% | |
| GAAAATAGACTTAGGTGGTT+TGG | - | chr4.3:13454359-13454378 | MS.gene27842:intron | 35.0% | |
| GACCTATAGATTCTGTAGTA+TGG | - | chr4.3:13454396-13454415 | MS.gene27842:intron | 35.0% | |
| GATCTGTCTAGAAATTCATC+AGG | + | chr4.3:13455040-13455059 | None:intergenic | 35.0% | |
| GCTAAAAACAAGTTCGACAT+TGG | - | chr4.3:13456829-13456848 | MS.gene27842:CDS | 35.0% | |
| GTAAAGCAAATGGCCTAATT+AGG | + | chr4.3:13455905-13455924 | None:intergenic | 35.0% | |
| GTAAGGTGAACATTCTTATG+TGG | - | chr4.3:13456137-13456156 | MS.gene27842:intron | 35.0% | |
| GTCCTCAAAATTGTGAGTAT+TGG | + | chr4.3:13454644-13454663 | None:intergenic | 35.0% | |
| GTGGTAAGACTATATGAGAT+AGG | - | chr4.3:13454280-13454299 | MS.gene27842:intron | 35.0% | |
| TATTATCTAAGAGACAGGAG+AGG | + | chr4.3:13455839-13455858 | None:intergenic | 35.0% | |
| TCGTCATATAGTTGCTATAG+TGG | - | chr4.3:13456293-13456312 | MS.gene27842:intron | 35.0% | |
| ! | AATGTCCTTTTTCTTTGGTG+TGG | - | chr4.3:13455560-13455579 | MS.gene27842:intron | 35.0% |
| ! | ACTTCTGACTTATTTCTCTG+TGG | - | chr4.3:13456730-13456749 | MS.gene27842:intron | 35.0% |
| ! | AGGTTAATGTCTGAAACACA+AGG | - | chr4.3:13454810-13454829 | MS.gene27842:intron | 35.0% |
| ! | ATCTCCTAAGACTGATTTCA+AGG | + | chr4.3:13456454-13456473 | None:intergenic | 35.0% |
| ! | CAAATGTGAGGACTTTGTTT+GGG | - | chr4.3:13456852-13456871 | MS.gene27842:CDS | 35.0% |
| ! | GACAGGATCAACATCTTTTA+AGG | - | chr4.3:13456542-13456561 | MS.gene27842:intron | 35.0% |
| ! | GACCAATACTCACAATTTTG+AGG | - | chr4.3:13454639-13454658 | MS.gene27842:CDS | 35.0% |
| ! | GGTTAATGTCTGAAACACAA+GGG | - | chr4.3:13454811-13454830 | MS.gene27842:intron | 35.0% |
| ! | GTAAGACTGGCAATTTTGTA+TGG | - | chr4.3:13454180-13454199 | MS.gene27842:CDS | 35.0% |
| ! | TGAAGATGATGTCATTGGTT+CGG | - | chr4.3:13453774-13453793 | MS.gene27842:CDS | 35.0% |
| ! | TTTAAAAACTCAGCTTGCTC+AGG | + | chr4.3:13456907-13456926 | None:intergenic | 35.0% |
| ! | TTTGTATGGAACAGAGTGTT+GGG | - | chr4.3:13454194-13454213 | MS.gene27842:CDS | 35.0% |
| ! | TTTTGTATGGAACAGAGTGT+TGG | - | chr4.3:13454193-13454212 | MS.gene27842:CDS | 35.0% |
| !! | AGATGGTGGAAAATAGACTT+AGG | - | chr4.3:13454351-13454370 | MS.gene27842:intron | 35.0% |
| !! | CATAGTTGGTAATTGTGCTA+TGG | - | chr4.3:13454850-13454869 | MS.gene27842:intron | 35.0% |
| !! | GTAGGCCTTTTCAATTTGTT+TGG | - | chr4.3:13456672-13456691 | MS.gene27842:intron | 35.0% |
| !! | TCAATTTTGGGAATAACCAC+AGG | + | chr4.3:13453872-13453891 | None:intergenic | 35.0% |
| !! | TTCTCTTTGGTGATGCTTAT+GGG | - | chr4.3:13456050-13456069 | MS.gene27842:intron | 35.0% |
| !!! | CGTTGATTTTATTCTCGTGT+TGG | + | chr4.3:13454230-13454249 | None:intergenic | 35.0% |
| AAATCAACGTAGCAGAGATG+AGG | - | chr4.3:13454241-13454260 | MS.gene27842:CDS | 40.0% | |
| AAGAATGTTCACCTTACGCA+TGG | + | chr4.3:13456134-13456153 | None:intergenic | 40.0% | |
| AAGACTGAACATGCACTAAC+AGG | + | chr4.3:13455742-13455761 | None:intergenic | 40.0% | |
| AAGCATCACCAAAGAGAAGA+AGG | + | chr4.3:13456048-13456067 | None:intergenic | 40.0% | |
| ACCTATAGCAGAAAAGATGG+TGG | - | chr4.3:13454337-13454356 | MS.gene27842:intron | 40.0% | |
| ACTGATATTGTGGCTGTTCT+TGG | - | chr4.3:13454944-13454963 | MS.gene27842:intron | 40.0% | |
| ACTTGAAGGGGGAATTCTAT+CGG | - | chr4.3:13454151-13454170 | MS.gene27842:intron | 40.0% | |
| AGCACCTATAGCAGAAAAGA+TGG | - | chr4.3:13454334-13454353 | MS.gene27842:intron | 40.0% | |
| ATATTGTCCTCGTCTTCCTT+TGG | - | chr4.3:13455489-13455508 | MS.gene27842:intron | 40.0% | |
| ATGGAGAGTAGATCAAATGG+AGG | - | chr4.3:13454415-13454434 | MS.gene27842:intron | 40.0% | |
| CCTATAGCACTATTGCATAG+CGG | - | chr4.3:13456324-13456343 | MS.gene27842:intron | 40.0% | |
| CCTCTTTAGGTCACTACAAA+GGG | - | chr4.3:13456003-13456022 | MS.gene27842:intron | 40.0% | |
| CTTCAGAGATAATTGCTGTG+TGG | - | chr4.3:13455958-13455977 | MS.gene27842:intron | 40.0% | |
| GCAAATGTGAGGACTTTGTT+TGG | - | chr4.3:13456851-13456870 | MS.gene27842:CDS | 40.0% | |
| GCGTAACTTCAATCTACTGT+TGG | - | chr4.3:13456584-13456603 | MS.gene27842:intron | 40.0% | |
| GGTGACTAAGGATGAATTGA+TGG | - | chr4.3:13456873-13456892 | MS.gene27842:CDS | 40.0% | |
| TAAGTACCCATACCTTGCAT+CGG | + | chr4.3:13455062-13455081 | None:intergenic | 40.0% | |
| TCTGCCTTGAAATCAGTCTT+AGG | - | chr4.3:13456447-13456466 | MS.gene27842:intron | 40.0% | |
| TGAACAACAATATGGGCCAT+CGG | + | chr4.3:13456507-13456526 | None:intergenic | 40.0% | |
| TGGTGGAAAATAGACTTAGG+TGG | - | chr4.3:13454354-13454373 | MS.gene27842:intron | 40.0% | |
| ! | AGGCTGCTATTTAACAACAC+TGG | + | chr4.3:13456190-13456209 | None:intergenic | 40.0% |
| ! | TCCACCATCTTTTCTGCTAT+AGG | + | chr4.3:13454341-13454360 | None:intergenic | 40.0% |
| !! | CTTCTCTTTGGTGATGCTTA+TGG | - | chr4.3:13456049-13456068 | MS.gene27842:intron | 40.0% |
| !! | TCTCTTTGGTGATGCTTATG+GGG | - | chr4.3:13456051-13456070 | MS.gene27842:intron | 40.0% |
| !! | TTTTCTGGAAAATGCCACAC+AGG | + | chr4.3:13456091-13456110 | None:intergenic | 40.0% |
| ACAGATCCGATGCAAGGTAT+GGG | - | chr4.3:13455053-13455072 | MS.gene27842:intron | 45.0% | |
| ATCAGAGGATACCATGCGTA+AGG | - | chr4.3:13456120-13456139 | MS.gene27842:intron | 45.0% | |
| ATGACATTTGCTCGCTCCAA+AGG | + | chr4.3:13455508-13455527 | None:intergenic | 45.0% | |
| CAATCTCTCAAACAGCACAG+AGG | + | chr4.3:13453849-13453868 | None:intergenic | 45.0% | |
| CCCTTTGTAGTGACCTAAAG+AGG | + | chr4.3:13456006-13456025 | None:intergenic | 45.0% | |
| CCGCTATGCAATAGTGCTAT+AGG | + | chr4.3:13456327-13456346 | None:intergenic | 45.0% | |
| CTATCGGACAGTTGTAAGAC+TGG | - | chr4.3:13454167-13454186 | MS.gene27842:CDS | 45.0% | |
| GATCCTGTCTGCTCTTCTTT+AGG | + | chr4.3:13456531-13456550 | None:intergenic | 45.0% | |
| GCCTCTTTAGGTCACTACAA+AGG | - | chr4.3:13456002-13456021 | MS.gene27842:intron | 45.0% | |
| GTTCGACATTGGCAAATGTG+AGG | - | chr4.3:13456840-13456859 | MS.gene27842:CDS | 45.0% | |
| GTTGAAATGGAGATGAGGCT+CGG | - | chr4.3:13454120-13454139 | MS.gene27842:intron | 45.0% | |
| TATCAATGTGAGGGCAGGAT+AGG | - | chr4.3:13455808-13455827 | MS.gene27842:intron | 45.0% | |
| TCTAAGAGACAGGAGAGGAT+TGG | + | chr4.3:13455834-13455853 | None:intergenic | 45.0% | |
| TGGTGGTTGAAATGGAGATG+AGG | - | chr4.3:13454115-13454134 | MS.gene27842:intron | 45.0% | |
| TGTTTACTTTCCAGGGGGAA+AGG | - | chr4.3:13455228-13455247 | MS.gene27842:intron | 45.0% | |
| TTCTAGACAGATCCGATGCA+AGG | - | chr4.3:13455047-13455066 | MS.gene27842:intron | 45.0% | |
| TTGAAATGGAGATGAGGCTC+GGG | - | chr4.3:13454121-13454140 | MS.gene27842:intron | 45.0% | |
| ! | AAGCCTTTTCCAACTAGGTG+GGG | + | chr4.3:13454555-13454574 | None:intergenic | 45.0% |
| ! | CAACCAAGCCTTTTCCAACT+AGG | + | chr4.3:13454560-13454579 | None:intergenic | 45.0% |
| ! | CAAGCCTTTTCCAACTAGGT+GGG | + | chr4.3:13454556-13454575 | None:intergenic | 45.0% |
| ! | CTCGGGTGACTTAACTTGAA+GGG | - | chr4.3:13454138-13454157 | MS.gene27842:intron | 45.0% |
| ! | GGACTTTGTTTGGGTGACTA+AGG | - | chr4.3:13456861-13456880 | MS.gene27842:CDS | 45.0% |
| ! | TCGGGTGACTTAACTTGAAG+GGG | - | chr4.3:13454139-13454158 | MS.gene27842:intron | 45.0% |
| ! | TTTATGGGGTTTCACTGGCT+AGG | - | chr4.3:13454981-13455000 | MS.gene27842:intron | 45.0% |
| ! | TTTCACTGGCTAGGTTTCGA+TGG | - | chr4.3:13454990-13455009 | MS.gene27842:intron | 45.0% |
| ! | TTTTGTCGGAAATGCTCCGA+TGG | - | chr4.3:13456488-13456507 | MS.gene27842:intron | 45.0% |
| !! | CAGTACCAGCTCTGAGAAAA+TGG | - | chr4.3:13453820-13453839 | MS.gene27842:CDS | 45.0% |
| !! | GAGGGCATTTAGGAAAGACT+TGG | - | chr4.3:13454459-13454478 | MS.gene27842:intron | 45.0% |
| AATCCTCGCCTCATCAAGAG+TGG | + | chr4.3:13453800-13453819 | None:intergenic | 50.0% | |
| AGTCAGATCGCTAGAGGTAG+AGG | - | chr4.3:13454440-13454459 | MS.gene27842:intron | 50.0% | |
| CAGAGATGAGGATGTTGCGT+TGG | - | chr4.3:13454253-13454272 | MS.gene27842:CDS | 50.0% | |
| CAGCCTAAAGAAGAGCAGAC+AGG | - | chr4.3:13456525-13456544 | MS.gene27842:intron | 50.0% | |
| CCACCTAGTTGGAAAAGGCT+TGG | - | chr4.3:13454554-13454573 | MS.gene27842:intron | 50.0% | |
| CTGATAATCACCTTTCCCCC+TGG | + | chr4.3:13455241-13455260 | None:intergenic | 50.0% | |
| GACAGATCCGATGCAAGGTA+TGG | - | chr4.3:13455052-13455071 | MS.gene27842:intron | 50.0% | |
| GAGGATAGTCAGATCGCTAG+AGG | - | chr4.3:13454434-13454453 | MS.gene27842:intron | 50.0% | |
| GCTGTTTGAGAGATTGCCTG+TGG | - | chr4.3:13453853-13453872 | MS.gene27842:CDS | 50.0% | |
| GTCAGATCGCTAGAGGTAGA+GGG | - | chr4.3:13454441-13454460 | MS.gene27842:intron | 50.0% | |
| TTGTCTGCTTCGGTGATTCG+CGG | + | chr4.3:13455282-13455301 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTTTCCAACTAGG+TGG | + | chr4.3:13454557-13454576 | None:intergenic | 50.0% |
| ! | CGGGTGACTTAACTTGAAGG+GGG | - | chr4.3:13454140-13454159 | MS.gene27842:intron | 50.0% |
| ! | CTTTTCCAACTAGGTGGGGT+CGG | + | chr4.3:13454551-13454570 | None:intergenic | 50.0% |
| ! | GCTCGGGTGACTTAACTTGA+AGG | - | chr4.3:13454137-13454156 | MS.gene27842:intron | 50.0% |
| ! | GGCAACCATTTTCTCAGAGC+TGG | + | chr4.3:13453828-13453847 | None:intergenic | 50.0% |
| !! | GCTAGAGGTAGAGGGCATTT+AGG | - | chr4.3:13454449-13454468 | MS.gene27842:intron | 50.0% |
| !! | GTATGGAACAGAGTGTTGGG+CGG | - | chr4.3:13454197-13454216 | MS.gene27842:CDS | 50.0% |
| CGACCCCACCTAGTTGGAAA+AGG | - | chr4.3:13454549-13454568 | MS.gene27842:intron | 55.0% | |
| CTCCAAGTGGAAAGCCTGTG+TGG | - | chr4.3:13456074-13456093 | MS.gene27842:intron | 55.0% | |
| GATGCTTATGGGGCTCCAAG+TGG | - | chr4.3:13456061-13456080 | MS.gene27842:intron | 55.0% | |
| TGCCACACAGGCTTTCCACT+TGG | + | chr4.3:13456079-13456098 | None:intergenic | 55.0% | |
| ! | AGGATGTTGCGTTGGTCGTG+TGG | - | chr4.3:13454261-13454280 | MS.gene27842:CDS | 55.0% |
| ! | CACTGGCTAGGTTTCGATGG+CGG | - | chr4.3:13454993-13455012 | MS.gene27842:intron | 55.0% |
| ! | TGGTTCGGCCACTCTTGATG+AGG | - | chr4.3:13453789-13453808 | MS.gene27842:CDS | 55.0% |
| ACTAGGTGGGGTCGGCTACA+TGG | + | chr4.3:13454543-13454562 | None:intergenic | 60.0% | |
| GCTCGCTCCAAAGGAAGACG+AGG | + | chr4.3:13455499-13455518 | None:intergenic | 60.0% | |
| TGTAGCCGACCCCACCTAGT+TGG | - | chr4.3:13454543-13454562 | MS.gene27842:intron | 60.0% | |
| CGGCCACTCTTGATGAGGCG+AGG | - | chr4.3:13453794-13453813 | MS.gene27842:CDS | 65.0% | |
| GCTTCGGTGATTCGCGGTGC+TGG | + | chr4.3:13455276-13455295 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 13453773 | 13456945 | 13453773 | ID=MS.gene27842 |
| chr4.3 | mRNA | 13453773 | 13456945 | 13453773 | ID=MS.gene27842.t1;Parent=MS.gene27842 |
| chr4.3 | exon | 13456797 | 13456945 | 13456797 | ID=MS.gene27842.t1.exon1;Parent=MS.gene27842.t1 |
| chr4.3 | CDS | 13456797 | 13456945 | 13456797 | ID=cds.MS.gene27842.t1;Parent=MS.gene27842.t1 |
| chr4.3 | exon | 13455650 | 13455715 | 13455650 | ID=MS.gene27842.t1.exon2;Parent=MS.gene27842.t1 |
| chr4.3 | CDS | 13455650 | 13455715 | 13455650 | ID=cds.MS.gene27842.t1;Parent=MS.gene27842.t1 |
| chr4.3 | exon | 13455402 | 13455476 | 13455402 | ID=MS.gene27842.t1.exon3;Parent=MS.gene27842.t1 |
| chr4.3 | CDS | 13455402 | 13455476 | 13455402 | ID=cds.MS.gene27842.t1;Parent=MS.gene27842.t1 |
| chr4.3 | exon | 13454577 | 13454706 | 13454577 | ID=MS.gene27842.t1.exon4;Parent=MS.gene27842.t1 |
| chr4.3 | CDS | 13454577 | 13454706 | 13454577 | ID=cds.MS.gene27842.t1;Parent=MS.gene27842.t1 |
| chr4.3 | exon | 13454155 | 13454280 | 13454155 | ID=MS.gene27842.t1.exon5;Parent=MS.gene27842.t1 |
| chr4.3 | CDS | 13454155 | 13454280 | 13454155 | ID=cds.MS.gene27842.t1;Parent=MS.gene27842.t1 |
| chr4.3 | exon | 13453773 | 13453916 | 13453773 | ID=MS.gene27842.t1.exon6;Parent=MS.gene27842.t1 |
| chr4.3 | CDS | 13453773 | 13453916 | 13453773 | ID=cds.MS.gene27842.t1;Parent=MS.gene27842.t1 |
| Gene Sequence |
| Protein sequence |
