Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27924.t1 | XP_003629945.1 | 91.4 | 233 | 20 | 0 | 50 | 282 | 197 | 429 | 1.10E-110 | 409.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27924.t1 | Q9SMC2 | 70.6 | 248 | 72 | 1 | 35 | 282 | 132 | 378 | 1.8e-90 | 334.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27924.t1 | G7L8T1 | 91.4 | 233 | 20 | 0 | 50 | 282 | 197 | 429 | 7.7e-111 | 409.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene27924 | 0.856024 | 4.26E-62 | -1.69E-46 |
| MS.gene049758 | MS.gene27924 | 0.820302 | 7.37E-53 | -1.69E-46 |
| MS.gene050099 | MS.gene27924 | 0.803673 | 3.12E-49 | -1.69E-46 |
| MS.gene050301 | MS.gene27924 | 0.866078 | 3.71E-65 | -1.69E-46 |
| MS.gene050516 | MS.gene27924 | 0.81499 | 1.16E-51 | -1.69E-46 |
| MS.gene050558 | MS.gene27924 | 0.804177 | 2.45E-49 | -1.69E-46 |
| MS.gene05101 | MS.gene27924 | 0.808836 | 2.55E-50 | -1.69E-46 |
| MS.gene051471 | MS.gene27924 | 0.804466 | 2.13E-49 | -1.69E-46 |
| MS.gene051663 | MS.gene27924 | 0.81669 | 4.86E-52 | -1.69E-46 |
| MS.gene051860 | MS.gene27924 | 0.834738 | 2.52E-56 | -1.69E-46 |
| MS.gene052078 | MS.gene27924 | 0.801263 | 9.78E-49 | -1.69E-46 |
| MS.gene052207 | MS.gene27924 | 0.848023 | 7.98E-60 | -1.69E-46 |
| MS.gene052287 | MS.gene27924 | 0.802299 | 5.99E-49 | -1.69E-46 |
| MS.gene052326 | MS.gene27924 | 0.81682 | 4.54E-52 | -1.69E-46 |
| MS.gene052485 | MS.gene27924 | 0.800328 | 1.52E-48 | -1.69E-46 |
| MS.gene053520 | MS.gene27924 | 0.802112 | 6.55E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene27924 | 0.836541 | 8.81E-57 | -1.69E-46 |
| MS.gene054011 | MS.gene27924 | 0.806638 | 7.46E-50 | -1.69E-46 |
| MS.gene054473 | MS.gene27924 | 0.808837 | 2.54E-50 | -1.69E-46 |
| MS.gene05455 | MS.gene27924 | 0.822713 | 2.04E-53 | -1.69E-46 |
| MS.gene055277 | MS.gene27924 | 0.834525 | 2.85E-56 | -1.69E-46 |
| MS.gene055303 | MS.gene27924 | 0.83248 | 9.23E-56 | -1.69E-46 |
| MS.gene055390 | MS.gene27924 | 0.881436 | 2.40E-70 | -1.69E-46 |
| MS.gene055422 | MS.gene27924 | 0.866511 | 2.70E-65 | -1.69E-46 |
| MS.gene055428 | MS.gene27924 | 0.831704 | 1.44E-55 | -1.69E-46 |
| MS.gene055604 | MS.gene27924 | 0.808972 | 2.38E-50 | -1.69E-46 |
| MS.gene056452 | MS.gene27924 | 0.80703 | 6.17E-50 | -1.69E-46 |
| MS.gene056902 | MS.gene27924 | 0.806621 | 7.53E-50 | -1.69E-46 |
| MS.gene056931 | MS.gene27924 | 0.805779 | 1.13E-49 | -1.69E-46 |
| MS.gene056933 | MS.gene27924 | 0.805289 | 1.43E-49 | -1.69E-46 |
| MS.gene056935 | MS.gene27924 | 0.801056 | 1.08E-48 | -1.69E-46 |
| MS.gene057121 | MS.gene27924 | 0.845976 | 2.90E-59 | -1.69E-46 |
| MS.gene057245 | MS.gene27924 | 0.852217 | 5.34E-61 | -1.69E-46 |
| MS.gene057469 | MS.gene27924 | 0.826768 | 2.26E-54 | -1.69E-46 |
| MS.gene058002 | MS.gene27924 | 0.82025 | 7.57E-53 | -1.69E-46 |
| MS.gene05811 | MS.gene27924 | 0.852513 | 4.40E-61 | -1.69E-46 |
| MS.gene058293 | MS.gene27924 | 0.809607 | 1.74E-50 | -1.69E-46 |
| MS.gene058660 | MS.gene27924 | 0.829383 | 5.31E-55 | -1.69E-46 |
| MS.gene05907 | MS.gene27924 | 0.810442 | 1.15E-50 | -1.69E-46 |
| MS.gene059518 | MS.gene27924 | 0.834343 | 3.17E-56 | -1.69E-46 |
| MS.gene05984 | MS.gene27924 | 0.818351 | 2.05E-52 | -1.69E-46 |
| MS.gene06037 | MS.gene27924 | 0.810703 | 1.01E-50 | -1.69E-46 |
| MS.gene060559 | MS.gene27924 | 0.820412 | 6.96E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27924.t1 | MTR_8g088600 | 91.026 | 234 | 21 | 0 | 50 | 283 | 197 | 430 | 3.31e-151 | 432 |
| MS.gene27924.t1 | MTR_8g088600 | 45.161 | 124 | 66 | 1 | 159 | 282 | 73 | 194 | 4.00e-28 | 113 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27924.t1 | AT2G31810 | 69.528 | 233 | 71 | 0 | 50 | 282 | 208 | 440 | 2.13e-114 | 338 |
| MS.gene27924.t1 | AT2G31810 | 42.857 | 126 | 70 | 1 | 157 | 282 | 82 | 205 | 8.16e-28 | 112 |
| MS.gene27924.t1 | AT2G31810 | 69.231 | 234 | 72 | 0 | 50 | 283 | 208 | 441 | 2.87e-114 | 338 |
| MS.gene27924.t1 | AT2G31810 | 42.857 | 126 | 70 | 1 | 157 | 282 | 82 | 205 | 9.07e-28 | 112 |
| MS.gene27924.t1 | AT2G31810 | 68.511 | 235 | 73 | 1 | 50 | 283 | 137 | 371 | 1.64e-112 | 332 |
| MS.gene27924.t1 | AT2G31810 | 43.137 | 102 | 56 | 1 | 181 | 282 | 35 | 134 | 5.73e-20 | 89.7 |
| MS.gene27924.t1 | AT5G16290 | 63.426 | 216 | 77 | 1 | 67 | 282 | 215 | 428 | 1.87e-96 | 293 |
| MS.gene27924.t1 | AT5G16290 | 47.581 | 124 | 63 | 1 | 159 | 282 | 74 | 195 | 1.57e-30 | 120 |
| MS.gene27924.t1 | AT5G16290 | 63.426 | 216 | 77 | 1 | 67 | 282 | 215 | 428 | 1.87e-96 | 293 |
| MS.gene27924.t1 | AT5G16290 | 47.581 | 124 | 63 | 1 | 159 | 282 | 74 | 195 | 1.57e-30 | 120 |
Find 70 sgRNAs with CRISPR-Local
Find 293 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAGAAATTTCGGCAAGTT+TGG | 0.241618 | 4.4:-12451706 | MS.gene27924:CDS |
| CTGTGTATGTTACAGGTTAC+TGG | 0.276804 | 4.4:-12451754 | MS.gene27924:intron |
| GGAGTTCTAAACATTGTTAC+AGG | 0.294864 | 4.4:-12449117 | MS.gene27924:CDS |
| TTGATCACCAAATTGCAAAA+TGG | 0.305947 | 4.4:+12451804 | None:intergenic |
| ATCAATCACGTGGTAATTTC+AGG | 0.310533 | 4.4:-12451786 | MS.gene27924:intron |
| TAGAAGGGGCTATAACATTC+AGG | 0.328690 | 4.4:-12449085 | MS.gene27924:intron |
| TGATCACCAAATTGCAAAAT+GGG | 0.337436 | 4.4:+12451805 | None:intergenic |
| ACAGCTATTAATGCTCTTGT+TGG | 0.343686 | 4.4:-12451440 | MS.gene27924:CDS |
| CAAACTTGCCGAAATTTCTC+TGG | 0.350301 | 4.4:+12451707 | None:intergenic |
| ACGTCGTGCAGCAGCATTTA+CGG | 0.355458 | 4.4:+12447914 | None:intergenic |
| GCAGCTGAATACCGCCAAAA+TGG | 0.358419 | 4.4:+12451488 | None:intergenic |
| CAAAACGCATGAGCAGATAA+TGG | 0.359371 | 4.4:+12451882 | None:intergenic |
| TTACAGGAGTCTTTGCTAGA+AGG | 0.359381 | 4.4:-12449101 | MS.gene27924:CDS |
| GTTGCAGTCCAGAGAAATTT+CGG | 0.367538 | 4.4:-12451715 | MS.gene27924:CDS |
| CGGCTTACAACTGTGGTTCC+TGG | 0.368646 | 4.4:-12448903 | MS.gene27924:CDS |
| TGGACTGCAACCATCTTCCC+TGG | 0.383234 | 4.4:+12451727 | None:intergenic |
| TCAAGTACTTGATGCTCAAT+GGG | 0.404142 | 4.4:-12450282 | MS.gene27924:CDS |
| TGGGTGCATCTGCTCCATTT+TGG | 0.409790 | 4.4:-12451502 | MS.gene27924:CDS |
| AAACTGTCTGAAGGCTCTAT+AGG | 0.416760 | 4.4:+12450314 | None:intergenic |
| TTAAAGAAAATAGCTAGAAC+TGG | 0.423877 | 4.4:-12451681 | MS.gene27924:CDS |
| ATACTTAGATTGCATTAAGA+AGG | 0.430892 | 4.4:-12451532 | MS.gene27924:intron |
| TGCATTAAGAAGGGAAAAGA+TGG | 0.440203 | 4.4:-12451522 | MS.gene27924:CDS |
| ATCAAGTACTTGATGCTCAA+TGG | 0.441151 | 4.4:-12450283 | MS.gene27924:CDS |
| TGCCGCTGCAACCGAGGAAA+AGG | 0.449967 | 4.4:-12447309 | MS.gene27924:CDS |
| ATCAATTCTCGCTCAGCAAA+TGG | 0.470292 | 4.4:+12447951 | None:intergenic |
| AAAACGCATGAGCAGATAAT+GGG | 0.473030 | 4.4:+12451883 | None:intergenic |
| TACTGGGGACCCAGGGAAGA+TGG | 0.476333 | 4.4:-12451737 | MS.gene27924:CDS |
| AAAATGGGGATGATGATGTT+TGG | 0.488172 | 4.4:+12451820 | None:intergenic |
| TTCCTCGGTTGCAGCGGCAA+AGG | 0.492401 | 4.4:+12447313 | None:intergenic |
| ATGCTTGTGAATGATGCTCC+TGG | 0.493572 | 4.4:-12449138 | MS.gene27924:CDS |
| GTAACAATGTTTAGAACTCC+AGG | 0.504311 | 4.4:+12449120 | None:intergenic |
| CTCGAGGGTTATTGTGTGAT+CGG | 0.508506 | 4.4:+12447842 | None:intergenic |
| AGCTTTAGCCCTGAAAATGC+TGG | 0.513506 | 4.4:+12447875 | None:intergenic |
| TGTGTATGTTACAGGTTACT+GGG | 0.517564 | 4.4:-12451753 | MS.gene27924:intron |
| ATCCTTTGCCGCTGCAACCG+AGG | 0.521308 | 4.4:-12447315 | MS.gene27924:CDS |
| TACAGGAGTCTTTGCTAGAA+GGG | 0.525094 | 4.4:-12449100 | MS.gene27924:CDS |
| GCAGCAATTGAATAAGTTAG+TGG | 0.527818 | 4.4:-12448853 | MS.gene27924:CDS |
| TGCAGCGGCAAAGGATTCGC+AGG | 0.530931 | 4.4:+12447322 | None:intergenic |
| GGACTGCAACCATCTTCCCT+GGG | 0.533876 | 4.4:+12451728 | None:intergenic |
| CTGATTGACTCATCTGTACC+AGG | 0.543139 | 4.4:+12448885 | None:intergenic |
| GCTTCGTATCCAGATCTTGA+GGG | 0.557075 | 4.4:-12451467 | MS.gene27924:CDS |
| TGCTTCGTATCCAGATCTTG+AGG | 0.559999 | 4.4:-12451468 | MS.gene27924:CDS |
| ATGGCAAGTGGGTTATATCC+CGG | 0.560667 | 4.4:+12447970 | None:intergenic |
| GAAAATAGCTAGAACTGGAA+AGG | 0.567569 | 4.4:-12451676 | MS.gene27924:intron |
| CTCGCTCAGCAAATGGCAAG+TGG | 0.570261 | 4.4:+12447958 | None:intergenic |
| CAGAAGTTGAAGGAATCTCT+CGG | 0.572266 | 4.4:-12448923 | MS.gene27924:CDS |
| TACTTAGATTGCATTAAGAA+GGG | 0.573249 | 4.4:-12451531 | MS.gene27924:intron |
| CAATTTGGTGATCAATCACG+TGG | 0.579047 | 4.4:-12451796 | MS.gene27924:CDS |
| CAAATGTGCTGATATGAGTC+GGG | 0.587098 | 4.4:-12451917 | None:intergenic |
| TTACAGGTTACTGGGGACCC+AGG | 0.591748 | 4.4:-12451745 | MS.gene27924:intron |
| ACAGGAGTCTTTGCTAGAAG+GGG | 0.592633 | 4.4:-12449099 | MS.gene27924:CDS |
| AGATGAGTCAATCAGCAAGT+TGG | 0.595540 | 4.4:-12448877 | MS.gene27924:CDS |
| TATTTCCAGAGTTTAGCTGT+AGG | 0.601110 | 4.4:-12448951 | MS.gene27924:intron |
| TACAGGTTACTGGGGACCCA+GGG | 0.618439 | 4.4:-12451744 | MS.gene27924:intron |
| GTAGGACATTCAGAAGTTGA+AGG | 0.623086 | 4.4:-12448933 | MS.gene27924:CDS |
| TGACAAAACTGATACGCCTG+TGG | 0.633286 | 4.4:-12451396 | MS.gene27924:CDS |
| CAAAACTGATACGCCTGTGG+GGG | 0.635833 | 4.4:-12451393 | MS.gene27924:intron |
| GCAAATGTGCTGATATGAGT+CGG | 0.640838 | 4.4:-12451918 | None:intergenic |
| TAAGTTAGTGGAGCTGCATG+AGG | 0.641559 | 4.4:-12448841 | MS.gene27924:intron |
| AATCTCTCGGCTTACAACTG+TGG | 0.643062 | 4.4:-12448910 | MS.gene27924:CDS |
| GCATTAAGAAGGGAAAAGAT+GGG | 0.648061 | 4.4:-12451521 | MS.gene27924:CDS |
| TCGCTCAGCAAATGGCAAGT+GGG | 0.649088 | 4.4:+12447959 | None:intergenic |
| GTGTATGTTACAGGTTACTG+GGG | 0.653049 | 4.4:-12451752 | MS.gene27924:intron |
| GATCACCAAATTGCAAAATG+GGG | 0.659108 | 4.4:+12451806 | None:intergenic |
| GACAAAACTGATACGCCTGT+GGG | 0.659876 | 4.4:-12451395 | MS.gene27924:CDS |
| TTGACTGTAAAACTGTCTGA+AGG | 0.661413 | 4.4:+12450305 | None:intergenic |
| GGATAATGCCTTCAGACTAG+CGG | 0.672373 | 4.4:-12449183 | MS.gene27924:intron |
| CAAGTACTTGATGCTCAATG+GGG | 0.672808 | 4.4:-12450281 | MS.gene27924:CDS |
| ACAAAACTGATACGCCTGTG+GGG | 0.675365 | 4.4:-12451394 | MS.gene27924:CDS |
| CGATCACACAATAACCCTCG+AGG | 0.724076 | 4.4:-12447841 | MS.gene27924:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAGTCCAAAAAA+AGG | + | chr4.4:12451750-12451769 | None:intergenic | 15.0% |
| !! | AAATTGATTAAAAATGTGTT+TGG | - | chr4.4:12449510-12449529 | MS.gene27924:intron | 15.0% |
| !!! | ACATTTCTATTTGATATTTT+TGG | - | chr4.4:12449108-12449127 | MS.gene27924:CDS | 15.0% |
| !!! | ATATGATTTTTTAGTATTAC+TGG | - | chr4.4:12450453-12450472 | MS.gene27924:intron | 15.0% |
| !!! | CTTATTTTAAGTATTTTTCA+TGG | + | chr4.4:12449271-12449290 | None:intergenic | 15.0% |
| !!! | GTTTTATTTTACATCTATAT+TGG | - | chr4.4:12451720-12451739 | MS.gene27924:CDS | 15.0% |
| !!! | TAAAAGCTAACATTTTTAAT+AGG | + | chr4.4:12447946-12447965 | None:intergenic | 15.0% |
| !!! | TACTGATTTTACAATATAAT+AGG | + | chr4.4:12450682-12450701 | None:intergenic | 15.0% |
| !!! | TTTTTTTGGACTTTTTTTTT+TGG | - | chr4.4:12451749-12451768 | MS.gene27924:intron | 15.0% |
| !! | AAAAGCAAACAGTTTATTTA+TGG | + | chr4.4:12450427-12450446 | None:intergenic | 20.0% |
| !! | AAAGATAAATACAAACTTCT+GGG | - | chr4.4:12451805-12451824 | MS.gene27924:CDS | 20.0% |
| !! | AAAGCAAACAGTTTATTTAT+GGG | + | chr4.4:12450426-12450445 | None:intergenic | 20.0% |
| !! | AATTGAATCTTTATTGTCTT+TGG | - | chr4.4:12448642-12448661 | MS.gene27924:intron | 20.0% |
| !! | ACAAAAAAACTTAAGGAAAA+AGG | + | chr4.4:12448244-12448263 | None:intergenic | 20.0% |
| !! | ACAAAATTGAAAATGTAGAA+AGG | + | chr4.4:12448343-12448362 | None:intergenic | 20.0% |
| !! | AGAGAATAAAAAGCAATATA+TGG | + | chr4.4:12448499-12448518 | None:intergenic | 20.0% |
| !! | CAAATAAATAGTGTACATAA+TGG | + | chr4.4:12448788-12448807 | None:intergenic | 20.0% |
| !! | CATTACAAGAAAACATAAAA+AGG | + | chr4.4:12448991-12449010 | None:intergenic | 20.0% |
| !! | CATTATGTACACTATTTATT+TGG | - | chr4.4:12448786-12448805 | MS.gene27924:intron | 20.0% |
| !! | GAAAAAAACAGAATTTAATG+TGG | + | chr4.4:12450844-12450863 | None:intergenic | 20.0% |
| !! | GAGAATAAAAAGCAATATAT+GGG | + | chr4.4:12448498-12448517 | None:intergenic | 20.0% |
| !! | TCTGAAAATCACATAATAAA+AGG | - | chr4.4:12449860-12449879 | MS.gene27924:intron | 20.0% |
| !! | TGTTAAATTAAAGAAATGCT+AGG | + | chr4.4:12447864-12447883 | None:intergenic | 20.0% |
| !! | TTTGTGAAGTAAATTATACT+AGG | - | chr4.4:12447986-12448005 | MS.gene27924:intron | 20.0% |
| !!! | AGCTTTTTATTTAACTTACA+AGG | - | chr4.4:12449743-12449762 | MS.gene27924:intron | 20.0% |
| !!! | ATAATTTGTTTGAAAGGTTA+CGG | - | chr4.4:12448124-12448143 | MS.gene27924:intron | 20.0% |
| !!! | ATGTGGAATAAACATTATTT+TGG | - | chr4.4:12449626-12449645 | MS.gene27924:intron | 20.0% |
| !!! | CTAATCAATTTTGTTACTAT+CGG | + | chr4.4:12450928-12450947 | None:intergenic | 20.0% |
| !!! | TATATTGGTTTTCCTTTTTT+TGG | - | chr4.4:12451735-12451754 | MS.gene27924:CDS | 20.0% |
| !!! | TGTTTGATAATTTGTTTGAA+AGG | - | chr4.4:12448118-12448137 | MS.gene27924:intron | 20.0% |
| !!! | TTTTTTGGTCTTTGAATATT+GGG | - | chr4.4:12451764-12451783 | MS.gene27924:intron | 20.0% |
| !!! | TTTTTTTGCTAATATCTTGA+CGG | - | chr4.4:12449706-12449725 | MS.gene27924:intron | 20.0% |
| !!! | TTTTTTTGGTCTTTGAATAT+TGG | - | chr4.4:12451763-12451782 | MS.gene27924:intron | 20.0% |
| ! | AAATCACATAATAAAAGGCT+TGG | - | chr4.4:12449865-12449884 | MS.gene27924:intron | 25.0% |
| ! | AAGCAAACAGTTTATTTATG+GGG | + | chr4.4:12450425-12450444 | None:intergenic | 25.0% |
| ! | AATCACATAATAAAAGGCTT+GGG | - | chr4.4:12449866-12449885 | MS.gene27924:intron | 25.0% |
| ! | ACATAAAAAGGAGACATTTA+AGG | + | chr4.4:12448979-12448998 | None:intergenic | 25.0% |
| ! | ACATCAGCATATAACTTTAA+TGG | - | chr4.4:12449978-12449997 | MS.gene27924:intron | 25.0% |
| ! | ACATTTCAAAAGAAAAGAGA+AGG | + | chr4.4:12448848-12448867 | None:intergenic | 25.0% |
| ! | AGTTAGGTTTCATTAATAAG+AGG | + | chr4.4:12451014-12451033 | None:intergenic | 25.0% |
| ! | ATAACATTGAATGATGCTAA+CGG | - | chr4.4:12448738-12448757 | MS.gene27924:intron | 25.0% |
| ! | ATACTTAGATTGCATTAAGA+AGG | - | chr4.4:12447676-12447695 | MS.gene27924:intron | 25.0% |
| ! | ATTAAATACTCTCTCGAATA+AGG | + | chr4.4:12448394-12448413 | None:intergenic | 25.0% |
| ! | CAAATAATAGCTATGAAATC+TGG | + | chr4.4:12448539-12448558 | None:intergenic | 25.0% |
| ! | CAATATATGGGTAAATAACA+AGG | + | chr4.4:12448486-12448505 | None:intergenic | 25.0% |
| ! | CATTTATAAAGCTCATAGAA+GGG | + | chr4.4:12449394-12449413 | None:intergenic | 25.0% |
| ! | GAAAGATAAATACAAACTTC+TGG | - | chr4.4:12451804-12451823 | MS.gene27924:CDS | 25.0% |
| ! | GTATAATTATTTACCACAAC+AGG | - | chr4.4:12449159-12449178 | MS.gene27924:CDS | 25.0% |
| ! | GTTAGGTTTCATTAATAAGA+GGG | + | chr4.4:12451013-12451032 | None:intergenic | 25.0% |
| ! | TACTTAGATTGCATTAAGAA+GGG | - | chr4.4:12447677-12447696 | MS.gene27924:intron | 25.0% |
| ! | TCACACCAAAAATTAATGTT+TGG | + | chr4.4:12449597-12449616 | None:intergenic | 25.0% |
| ! | TGCATGAATTTCTAATTGTT+GGG | - | chr4.4:12450004-12450023 | MS.gene27924:intron | 25.0% |
| ! | TTAAAGAAAATAGCTAGAAC+TGG | - | chr4.4:12447527-12447546 | MS.gene27924:intron | 25.0% |
| ! | TTAAATACTCTCTCGAATAA+GGG | + | chr4.4:12448393-12448412 | None:intergenic | 25.0% |
| ! | TTAGGTTTCATTAATAAGAG+GGG | + | chr4.4:12451012-12451031 | None:intergenic | 25.0% |
| ! | TTGCATGAATTTCTAATTGT+TGG | - | chr4.4:12450003-12450022 | MS.gene27924:intron | 25.0% |
| !! | AAAGCATCAGAAGTATAAAA+TGG | + | chr4.4:12451211-12451230 | None:intergenic | 25.0% |
| !!! | ATTCTTTTAAGTGTGTGTTT+GGG | - | chr4.4:12449476-12449495 | MS.gene27924:intron | 25.0% |
| !!! | TATGAAATGTTTTGAAACTG+CGG | + | chr4.4:12449238-12449257 | None:intergenic | 25.0% |
| !!! | TATTCTTTTAAGTGTGTGTT+TGG | - | chr4.4:12449475-12449494 | MS.gene27924:intron | 25.0% |
| !!! | TCTATTTTTTTTCCTTCGAA+TGG | - | chr4.4:12451395-12451414 | MS.gene27924:CDS | 25.0% |
| !!! | TGCATTTATTTTAGTAGAGA+TGG | + | chr4.4:12450397-12450416 | None:intergenic | 25.0% |
| AAAAAATAGACTTTACCTCG+AGG | + | chr4.4:12451385-12451404 | None:intergenic | 30.0% | |
| AAAAATAGACTTTACCTCGA+GGG | + | chr4.4:12451384-12451403 | None:intergenic | 30.0% | |
| AAAATCTGTTCGTCTTTAGT+TGG | + | chr4.4:12448713-12448732 | None:intergenic | 30.0% | |
| AGCAAGATTAATTATGAGGT+AGG | + | chr4.4:12451051-12451070 | None:intergenic | 30.0% | |
| AGTCAATATGAGTGATCTAA+AGG | + | chr4.4:12448442-12448461 | None:intergenic | 30.0% | |
| AGTTTGAGCTATAAGAGATA+AGG | + | chr4.4:12451553-12451572 | None:intergenic | 30.0% | |
| ATTAAATCTTCACAGATGTC+TGG | + | chr4.4:12449903-12449922 | None:intergenic | 30.0% | |
| CACCAAAAATTAATGTTTGG+TGG | + | chr4.4:12449594-12449613 | None:intergenic | 30.0% | |
| CCTCAAAGAAAAACAATTGA+GGG | + | chr4.4:12448419-12448438 | None:intergenic | 30.0% | |
| GAAAAAGGTTGCATTCATAA+AGG | + | chr4.4:12448229-12448248 | None:intergenic | 30.0% | |
| GAGGAAGACAAAAAAACTTA+AGG | + | chr4.4:12448251-12448270 | None:intergenic | 30.0% | |
| GCATTTATAAAGCTCATAGA+AGG | + | chr4.4:12449395-12449414 | None:intergenic | 30.0% | |
| GTGTTGAACATTTCTTATCT+GGG | - | chr4.4:12449308-12449327 | MS.gene27924:intron | 30.0% | |
| TAAATACTCTCTCGAATAAG+GGG | + | chr4.4:12448392-12448411 | None:intergenic | 30.0% | |
| TAGGCACAAAAATGAACATA+CGG | - | chr4.4:12450519-12450538 | MS.gene27924:intron | 30.0% | |
| TAGGTTTCATTAATAAGAGG+GGG | + | chr4.4:12451011-12451030 | None:intergenic | 30.0% | |
| TCAGAAAAGCAAAATCATGT+TGG | + | chr4.4:12449845-12449864 | None:intergenic | 30.0% | |
| TGATCACCAAATTGCAAAAT+GGG | + | chr4.4:12447406-12447425 | None:intergenic | 30.0% | |
| TGGACAAGATAAAAGAGTTA+AGG | + | chr4.4:12447590-12447609 | None:intergenic | 30.0% | |
| TTAAAATCACAAACAAGCAC+AGG | - | chr4.4:12447963-12447982 | MS.gene27924:CDS | 30.0% | |
| TTAGTATTTACTCCTTTGTC+CGG | - | chr4.4:12451444-12451463 | MS.gene27924:CDS | 30.0% | |
| TTGATCACCAAATTGCAAAA+TGG | + | chr4.4:12447407-12447426 | None:intergenic | 30.0% | |
| ! | AAGAACTCTACACTCTAAAA+AGG | + | chr4.4:12449066-12449085 | None:intergenic | 30.0% |
| ! | AGAACTCTACACTCTAAAAA+GGG | + | chr4.4:12449065-12449084 | None:intergenic | 30.0% |
| ! | AGCCACCAAACATTAATTTT+TGG | - | chr4.4:12449589-12449608 | MS.gene27924:intron | 30.0% |
| !! | ATCAAACACGATTCTAAAGT+AGG | + | chr4.4:12448106-12448125 | None:intergenic | 30.0% |
| !! | TTCTAAAGTAGGATGGATAA+AGG | + | chr4.4:12448095-12448114 | None:intergenic | 30.0% |
| !!! | AAGTTTTTTTGTCTTCCTCT+TGG | - | chr4.4:12448252-12448271 | MS.gene27924:intron | 30.0% |
| AAAACGCATGAGCAGATAAT+GGG | + | chr4.4:12447328-12447347 | None:intergenic | 35.0% | |
| ACAATTAGCTGAATACCAAG+AGG | + | chr4.4:12448270-12448289 | None:intergenic | 35.0% | |
| ACAGCTATTAATGCTCTTGT+TGG | - | chr4.4:12447768-12447787 | MS.gene27924:intron | 35.0% | |
| AGCTATAAGAGATAAGGAGT+TGG | + | chr4.4:12451489-12451508 | None:intergenic | 35.0% | |
| AGGCACAAAAATGAACATAC+GGG | - | chr4.4:12450520-12450539 | MS.gene27924:intron | 35.0% | |
| AGTCATTCTGTGTATGTTAC+AGG | - | chr4.4:12447447-12447466 | MS.gene27924:intron | 35.0% | |
| ATCAAGTACTTGATGCTCAA+TGG | - | chr4.4:12448925-12448944 | MS.gene27924:CDS | 35.0% | |
| ATCAATCACGTGGTAATTTC+AGG | - | chr4.4:12447422-12447441 | MS.gene27924:intron | 35.0% | |
| ATCCTTGTAATCTCCATTGA+TGG | - | chr4.4:12450773-12450792 | MS.gene27924:intron | 35.0% | |
| ATGAGAAGTTCAACCAGAAT+GGG | + | chr4.4:12449442-12449461 | None:intergenic | 35.0% | |
| CCTCATAATTAATCTTGCTC+AGG | - | chr4.4:12451052-12451071 | MS.gene27924:intron | 35.0% | |
| CCTGAGCAAGATTAATTATG+AGG | + | chr4.4:12451055-12451074 | None:intergenic | 35.0% | |
| CCTTATCTCTTATAGCTCAA+GGG | - | chr4.4:12451492-12451511 | MS.gene27924:CDS | 35.0% | |
| CGTGTTGAACATTTCTTATC+TGG | - | chr4.4:12449307-12449326 | MS.gene27924:intron | 35.0% | |
| GAAAATAGCTAGAACTGGAA+AGG | - | chr4.4:12447532-12447551 | MS.gene27924:intron | 35.0% | |
| GAAATGTTTGCTTGTGTGAA+GGG | - | chr4.4:12448861-12448880 | MS.gene27924:CDS | 35.0% | |
| GATCACCAAATTGCAAAATG+GGG | + | chr4.4:12447405-12447424 | None:intergenic | 35.0% | |
| GCAGCAATTGAATAAGTTAG+TGG | - | chr4.4:12450355-12450374 | MS.gene27924:intron | 35.0% | |
| GCATTAAGAAGGGAAAAGAT+GGG | - | chr4.4:12447687-12447706 | MS.gene27924:intron | 35.0% | |
| GCCTCAAAGAAAAACAATTG+AGG | + | chr4.4:12448420-12448439 | None:intergenic | 35.0% | |
| GCTATGAAATCTGGTACTAA+AGG | + | chr4.4:12448530-12448549 | None:intergenic | 35.0% | |
| TACATAGACTTTACCCTCAA+GGG | + | chr4.4:12451591-12451610 | None:intergenic | 35.0% | |
| TAGTATTTACTCCTTTGTCC+GGG | - | chr4.4:12451445-12451464 | MS.gene27924:CDS | 35.0% | |
| TATGAGAAGTTCAACCAGAA+TGG | + | chr4.4:12449443-12449462 | None:intergenic | 35.0% | |
| TATTTCCAGAGTTTAGCTGT+AGG | - | chr4.4:12450257-12450276 | MS.gene27924:intron | 35.0% | |
| TCAAGTACTTGATGCTCAAT+GGG | - | chr4.4:12448926-12448945 | MS.gene27924:CDS | 35.0% | |
| TCCATGTCCTTGTATTCTTA+CGG | - | chr4.4:12449340-12449359 | MS.gene27924:intron | 35.0% | |
| TCCTTATCTCTTATAGCTCA+AGG | - | chr4.4:12451491-12451510 | MS.gene27924:CDS | 35.0% | |
| TGAAATGTTTGCTTGTGTGA+AGG | - | chr4.4:12448860-12448879 | MS.gene27924:CDS | 35.0% | |
| TGCATTAAGAAGGGAAAAGA+TGG | - | chr4.4:12447686-12447705 | MS.gene27924:intron | 35.0% | |
| TGTGTATGTTACAGGTTACT+GGG | - | chr4.4:12447455-12447474 | MS.gene27924:intron | 35.0% | |
| TGTGTGAGATACTGTATCAT+TGG | + | chr4.4:12451624-12451643 | None:intergenic | 35.0% | |
| TTGACTGTAAAACTGTCTGA+AGG | + | chr4.4:12448906-12448925 | None:intergenic | 35.0% | |
| TTTGATTCTTGCTACCTGTA+AGG | - | chr4.4:12448555-12448574 | MS.gene27924:intron | 35.0% | |
| ! | AAAATGGGGATGATGATGTT+TGG | + | chr4.4:12447391-12447410 | None:intergenic | 35.0% |
| ! | AAAGTCAGTTTTTACCCAGA+TGG | - | chr4.4:12449536-12449555 | MS.gene27924:intron | 35.0% |
| ! | AACTCTGAGAATAGTTCACA+AGG | + | chr4.4:12449187-12449206 | None:intergenic | 35.0% |
| ! | ATCATCCCCATTTTGCAATT+TGG | - | chr4.4:12447397-12447416 | MS.gene27924:intron | 35.0% |
| ! | CAAGAGATTTTATAGCTGCT+TGG | + | chr4.4:12451087-12451106 | None:intergenic | 35.0% |
| ! | GGTTCAAGTGTAGTCAATTT+TGG | - | chr4.4:12449561-12449580 | MS.gene27924:intron | 35.0% |
| ! | GTAACAATGTTTAGAACTCC+AGG | + | chr4.4:12450091-12450110 | None:intergenic | 35.0% |
| ! | TATACTTCTGATGCTTTTCC+AGG | - | chr4.4:12451214-12451233 | MS.gene27924:intron | 35.0% |
| ! | TATTGACTGTAGATTGTGTG+TGG | - | chr4.4:12448454-12448473 | MS.gene27924:intron | 35.0% |
| ! | TCTCCTTGAAAAAGCATAGT+TGG | + | chr4.4:12450595-12450614 | None:intergenic | 35.0% |
| ! | TGATATTGCCAGCATTTTCA+GGG | - | chr4.4:12451325-12451344 | MS.gene27924:intron | 35.0% |
| ! | TTCTCAAATCGATTCACTTG+TGG | + | chr4.4:12450557-12450576 | None:intergenic | 35.0% |
| ! | TTGATATTGCCAGCATTTTC+AGG | - | chr4.4:12451324-12451343 | MS.gene27924:intron | 35.0% |
| ! | TTTAGGATTTGAGTGTGGAA+TGG | - | chr4.4:12450747-12450766 | MS.gene27924:intron | 35.0% |
| !! | AACACGATTCTAAAGTAGGA+TGG | + | chr4.4:12448102-12448121 | None:intergenic | 35.0% |
| !! | CACGCTTTATTTATAGCATG+TGG | + | chr4.4:12449661-12449680 | None:intergenic | 35.0% |
| !! | CCCTCAATTGTTTTTCTTTG+AGG | - | chr4.4:12448416-12448435 | MS.gene27924:intron | 35.0% |
| !! | GGAGTTCTAAACATTGTTAC+AGG | - | chr4.4:12450091-12450110 | MS.gene27924:intron | 35.0% |
| !! | TTCTGTTTCTTTTCCCATTC+TGG | - | chr4.4:12449426-12449445 | MS.gene27924:intron | 35.0% |
| !!! | ACTAGGTGTGTTTTGAAGAA+TGG | - | chr4.4:12448003-12448022 | MS.gene27924:intron | 35.0% |
| !!! | TTTTTTTCTCTGTATGCACC+CGG | - | chr4.4:12450856-12450875 | MS.gene27924:intron | 35.0% |
| AAACTGTCTGAAGGCTCTAT+AGG | + | chr4.4:12448897-12448916 | None:intergenic | 40.0% | |
| AAGAAACAGAATGAACGAGC+TGG | + | chr4.4:12449417-12449436 | None:intergenic | 40.0% | |
| AAGGAGAGTTGAGTGAAAAC+AGG | - | chr4.4:12450608-12450627 | MS.gene27924:intron | 40.0% | |
| AAGGGAAAAGTCACCATCAA+TGG | + | chr4.4:12450789-12450808 | None:intergenic | 40.0% | |
| AATGTCCTACAGCTAAACTC+TGG | + | chr4.4:12450265-12450284 | None:intergenic | 40.0% | |
| AGAAATGTTCAACACGTCGT+CGG | + | chr4.4:12449303-12449322 | None:intergenic | 40.0% | |
| AGAGTTGAGTGAAAACAGGA+GGG | - | chr4.4:12450612-12450631 | MS.gene27924:intron | 40.0% | |
| AGATGAGTCAATCAGCAAGT+TGG | - | chr4.4:12450331-12450350 | MS.gene27924:intron | 40.0% | |
| AGGTTACGGTATACATGCAA+AGG | - | chr4.4:12448138-12448157 | MS.gene27924:intron | 40.0% | |
| ATATAATAGGATCATGCCCC+TGG | + | chr4.4:12450669-12450688 | None:intergenic | 40.0% | |
| ATCAATTCTCGCTCAGCAAA+TGG | + | chr4.4:12451260-12451279 | None:intergenic | 40.0% | |
| ATCTCTTATAGCTCAAGGGT+TGG | - | chr4.4:12451496-12451515 | MS.gene27924:CDS | 40.0% | |
| CAAAACGCATGAGCAGATAA+TGG | + | chr4.4:12447329-12447348 | None:intergenic | 40.0% | |
| CAAACTTGCCGAAATTTCTC+TGG | + | chr4.4:12447504-12447523 | None:intergenic | 40.0% | |
| CAAGTACTTGATGCTCAATG+GGG | - | chr4.4:12448927-12448946 | MS.gene27924:CDS | 40.0% | |
| CACAGATGTCTGGCAAAATT+TGG | + | chr4.4:12449893-12449912 | None:intergenic | 40.0% | |
| CACCATCAATGGAGATTACA+AGG | + | chr4.4:12450778-12450797 | None:intergenic | 40.0% | |
| CACTGTGATGAATGAGAAAG+TGG | + | chr4.4:12447610-12447629 | None:intergenic | 40.0% | |
| CAGAAGTTGAAGGAATCTCT+CGG | - | chr4.4:12450285-12450304 | MS.gene27924:CDS | 40.0% | |
| CAGAGAAATTTCGGCAAGTT+TGG | - | chr4.4:12447502-12447521 | MS.gene27924:intron | 40.0% | |
| CATTTCTACCACAACCTTAC+AGG | + | chr4.4:12448572-12448591 | None:intergenic | 40.0% | |
| CATTTCTTATCTGGGCATCA+AGG | - | chr4.4:12449316-12449335 | MS.gene27924:intron | 40.0% | |
| CCATGTCCTTGTATTCTTAC+GGG | - | chr4.4:12449341-12449360 | MS.gene27924:intron | 40.0% | |
| CCCTTGAGCTATAAGAGATA+AGG | + | chr4.4:12451495-12451514 | None:intergenic | 40.0% | |
| CTACATAGACTTTACCCTCA+AGG | + | chr4.4:12451592-12451611 | None:intergenic | 40.0% | |
| CTGTGTATGTTACAGGTTAC+TGG | - | chr4.4:12447454-12447473 | MS.gene27924:intron | 40.0% | |
| GAACTTCTCATAGCTTAGGA+GGG | - | chr4.4:12449451-12449470 | MS.gene27924:intron | 40.0% | |
| GAGAAGGTCAGATACTAGAT+CGG | + | chr4.4:12448832-12448851 | None:intergenic | 40.0% | |
| GATTTCTAACACACCTTTGC+TGG | - | chr4.4:12448308-12448327 | MS.gene27924:intron | 40.0% | |
| GGCACAAAAATGAACATACG+GGG | - | chr4.4:12450521-12450540 | MS.gene27924:intron | 40.0% | |
| GGCACACTCAAAAACTAGTT+AGG | + | chr4.4:12451030-12451049 | None:intergenic | 40.0% | |
| GGTTGAACTTCTCATAGCTT+AGG | - | chr4.4:12449447-12449466 | MS.gene27924:intron | 40.0% | |
| GTAGGACATTCAGAAGTTGA+AGG | - | chr4.4:12450275-12450294 | MS.gene27924:CDS | 40.0% | |
| GTATGATACTGTATCGCTGT+TGG | - | chr4.4:12451661-12451680 | MS.gene27924:intron | 40.0% | |
| GTGTATGTTACAGGTTACTG+GGG | - | chr4.4:12447456-12447475 | MS.gene27924:intron | 40.0% | |
| GTTGCAGTCCAGAGAAATTT+CGG | - | chr4.4:12447493-12447512 | MS.gene27924:intron | 40.0% | |
| TAAGAGATAAGGAGTTGGAG+AGG | + | chr4.4:12451484-12451503 | None:intergenic | 40.0% | |
| TACAGGAGTCTTTGCTAGAA+GGG | - | chr4.4:12450108-12450127 | MS.gene27924:intron | 40.0% | |
| TAGAAGGGGCTATAACATTC+AGG | - | chr4.4:12450123-12450142 | MS.gene27924:intron | 40.0% | |
| TATGCTCCCGTAAGAATACA+AGG | + | chr4.4:12449350-12449369 | None:intergenic | 40.0% | |
| TCTCTTATAGCTCAAGGGTT+GGG | - | chr4.4:12451497-12451516 | MS.gene27924:CDS | 40.0% | |
| TGAAATGTCAACAGTGCTTG+AGG | + | chr4.4:12448047-12448066 | None:intergenic | 40.0% | |
| TGAACTTCTCATAGCTTAGG+AGG | - | chr4.4:12449450-12449469 | MS.gene27924:intron | 40.0% | |
| TGGAGATTGGCAAATGCTAT+GGG | + | chr4.4:12450487-12450506 | None:intergenic | 40.0% | |
| TGTCCATCAGCATCATCAAA+GGG | + | chr4.4:12450807-12450826 | None:intergenic | 40.0% | |
| TTACAGGAGTCTTTGCTAGA+AGG | - | chr4.4:12450107-12450126 | MS.gene27924:intron | 40.0% | |
| TTGTGTTGGAAACCTGTCTT+AGG | - | chr4.4:12450893-12450912 | MS.gene27924:intron | 40.0% | |
| ! | AAACTTCTGGGCTCTGTTTT+TGG | - | chr4.4:12451817-12451836 | MS.gene27924:CDS | 40.0% |
| ! | AAATCGATTCACTTGTGGTC+GGG | + | chr4.4:12450552-12450571 | None:intergenic | 40.0% |
| ! | ACGAGCATCAGCTAGATTTT+TGG | + | chr4.4:12449958-12449977 | None:intergenic | 40.0% |
| ! | ACTGCTAATTTGCCATTCGA+AGG | + | chr4.4:12451410-12451429 | None:intergenic | 40.0% |
| ! | CAAATCGATTCACTTGTGGT+CGG | + | chr4.4:12450553-12450572 | None:intergenic | 40.0% |
| ! | CAATTTGGTGATCAATCACG+TGG | - | chr4.4:12447412-12447431 | MS.gene27924:intron | 40.0% |
| ! | TAAAGCTCATAGAAGGGCAT+TGG | + | chr4.4:12449388-12449407 | None:intergenic | 40.0% |
| ! | TCAGTTTTTACCCAGATGGA+GGG | - | chr4.4:12449540-12449559 | MS.gene27924:intron | 40.0% |
| ! | TTTTGTGCCTACTATGACAG+TGG | + | chr4.4:12450510-12450529 | None:intergenic | 40.0% |
| !! | TTTCCCTTTGATGATGCTGA+TGG | - | chr4.4:12450801-12450820 | MS.gene27924:intron | 40.0% |
| !!! | ACTGTATCGCTGTTGGTTTT+TGG | - | chr4.4:12451668-12451687 | MS.gene27924:intron | 40.0% |
| !!! | GAGCCAACTATGCTTTTTCA+AGG | - | chr4.4:12450589-12450608 | MS.gene27924:intron | 40.0% |
| AATCTCTCGGCTTACAACTG+TGG | - | chr4.4:12450298-12450317 | MS.gene27924:CDS | 45.0% | |
| ACAAAACTGATACGCCTGTG+GGG | - | chr4.4:12447814-12447833 | MS.gene27924:intron | 45.0% | |
| ACAGGAGTCTTTGCTAGAAG+GGG | - | chr4.4:12450109-12450128 | MS.gene27924:intron | 45.0% | |
| AGACTTTACCCTCAAGGGTT+GGG | + | chr4.4:12451586-12451605 | None:intergenic | 45.0% | |
| ATCTCCACCACTGTCATAGT+AGG | - | chr4.4:12450500-12450519 | MS.gene27924:intron | 45.0% | |
| ATGCTTGTGAATGATGCTCC+TGG | - | chr4.4:12450070-12450089 | MS.gene27924:intron | 45.0% | |
| ATGTAAGATCATACCCCCAC+AGG | + | chr4.4:12447831-12447850 | None:intergenic | 45.0% | |
| CCAACACAAATCTCCTGTTG+TGG | + | chr4.4:12450882-12450901 | None:intergenic | 45.0% | |
| CCACAACAGGAGATTTGTGT+TGG | - | chr4.4:12450879-12450898 | MS.gene27924:intron | 45.0% | |
| CCCGTAAGAATACAAGGACA+TGG | + | chr4.4:12449344-12449363 | None:intergenic | 45.0% | |
| CGGTCATCAAATCCTAAGAC+AGG | + | chr4.4:12450908-12450927 | None:intergenic | 45.0% | |
| CTAGCAAAAACCTGCATACG+AGG | + | chr4.4:12449023-12449042 | None:intergenic | 45.0% | |
| CTCGAGGGTTATTGTGTGAT+CGG | + | chr4.4:12451369-12451388 | None:intergenic | 45.0% | |
| GACAAAACTGATACGCCTGT+GGG | - | chr4.4:12447813-12447832 | MS.gene27924:intron | 45.0% | |
| GAGAGTTGAGTGAAAACAGG+AGG | - | chr4.4:12450611-12450630 | MS.gene27924:intron | 45.0% | |
| GCATTGTAATCCTCGTATGC+AGG | - | chr4.4:12449010-12449029 | MS.gene27924:intron | 45.0% | |
| GCTTCGTATCCAGATCTTGA+GGG | - | chr4.4:12447741-12447760 | MS.gene27924:intron | 45.0% | |
| GGATAATGCCTTCAGACTAG+CGG | - | chr4.4:12450025-12450044 | MS.gene27924:intron | 45.0% | |
| GTGGAGATTGGCAAATGCTA+TGG | + | chr4.4:12450488-12450507 | None:intergenic | 45.0% | |
| GTGTCCATCAGCATCATCAA+AGG | + | chr4.4:12450808-12450827 | None:intergenic | 45.0% | |
| GTTAACTCTCAGTTGCAGTG+AGG | - | chr4.4:12450702-12450721 | MS.gene27924:intron | 45.0% | |
| TAAGGAGTTGGAGAGGTCTT+CGG | + | chr4.4:12451477-12451496 | None:intergenic | 45.0% | |
| TAAGTTAGTGGAGCTGCATG+AGG | - | chr4.4:12450367-12450386 | MS.gene27924:intron | 45.0% | |
| TACACTTGAACCCTCCATCT+GGG | + | chr4.4:12449553-12449572 | None:intergenic | 45.0% | |
| TAGACTTTACCCTCAAGGGT+TGG | + | chr4.4:12451587-12451606 | None:intergenic | 45.0% | |
| TCTTGCTACCTGTAAGGTTG+TGG | - | chr4.4:12448561-12448580 | MS.gene27924:intron | 45.0% | |
| TGACAAAACTGATACGCCTG+TGG | - | chr4.4:12447812-12447831 | MS.gene27924:intron | 45.0% | |
| TGCTTCGTATCCAGATCTTG+AGG | - | chr4.4:12447740-12447759 | MS.gene27924:intron | 45.0% | |
| ! | AATCGATTCACTTGTGGTCG+GGG | + | chr4.4:12450551-12450570 | None:intergenic | 45.0% |
| ! | ACTATGACAGTGGTGGAGAT+TGG | + | chr4.4:12450500-12450519 | None:intergenic | 45.0% |
| ! | AGCTTTAGCCCTGAAAATGC+TGG | + | chr4.4:12451336-12451355 | None:intergenic | 45.0% |
| ! | ATCGAATTCCGCTAGTCTGA+AGG | + | chr4.4:12450036-12450055 | None:intergenic | 45.0% |
| ! | CTGATTGACTCATCTGTACC+AGG | + | chr4.4:12450326-12450345 | None:intergenic | 45.0% |
| ! | CTGGGTTTAGGATTTGAGTG+TGG | - | chr4.4:12450742-12450761 | MS.gene27924:intron | 45.0% |
| ! | GGGGCTATAACATTCAGGTT+TGG | - | chr4.4:12450128-12450147 | MS.gene27924:intron | 45.0% |
| ! | GTCAGTTTTTACCCAGATGG+AGG | - | chr4.4:12449539-12449558 | MS.gene27924:intron | 45.0% |
| ! | TTCTGATGCTTTTCCAGGTC+CGG | - | chr4.4:12451219-12451238 | MS.gene27924:intron | 45.0% |
| !! | ATGGCAAGTGGGTTATATCC+CGG | + | chr4.4:12451241-12451260 | None:intergenic | 45.0% |
| !! | GGCGTATCAGTTTTGTCAAC+AGG | + | chr4.4:12447810-12447829 | None:intergenic | 45.0% |
| !!! | GCTGTTTTTCCCTCAAGATC+TGG | + | chr4.4:12447753-12447772 | None:intergenic | 45.0% |
| !! | ATTTAATTGAAATAAATAAT+TGG | - | chr4.4:12447915-12447934 | MS.gene27924:CDS | 5.0% |
| !!! | AGTTTTATTAATATTAAAAA+TGG | + | chr4.4:12451186-12451205 | None:intergenic | 5.0% |
| !!! | ATTTTTAATATTAATAAAAC+TGG | - | chr4.4:12451185-12451204 | MS.gene27924:intron | 5.0% |
| ACAAATCTCCTGTTGTGGCC+GGG | + | chr4.4:12450877-12450896 | None:intergenic | 50.0% | |
| ACTGATACTGTCTTCGCCAG+GGG | - | chr4.4:12450650-12450669 | MS.gene27924:intron | 50.0% | |
| AGTTCACAAGGCTCCTGTTG+TGG | + | chr4.4:12449175-12449194 | None:intergenic | 50.0% | |
| CAAAACTGATACGCCTGTGG+GGG | - | chr4.4:12447815-12447834 | MS.gene27924:intron | 50.0% | |
| CACAAATCTCCTGTTGTGGC+CGG | + | chr4.4:12450878-12450897 | None:intergenic | 50.0% | |
| CACTGATACTGTCTTCGCCA+GGG | - | chr4.4:12450649-12450668 | MS.gene27924:intron | 50.0% | |
| CGATCACACAATAACCCTCG+AGG | - | chr4.4:12451367-12451386 | MS.gene27924:intron | 50.0% | |
| CTACACTTGAACCCTCCATC+TGG | + | chr4.4:12449554-12449573 | None:intergenic | 50.0% | |
| GACTGAGGATCAGGTGTACT+GGG | - | chr4.4:12450724-12450743 | MS.gene27924:intron | 50.0% | |
| GCAGCTGAATACCGCCAAAA+TGG | + | chr4.4:12447723-12447742 | None:intergenic | 50.0% | |
| GGATCAGGTGTACTGGGTTT+AGG | - | chr4.4:12450730-12450749 | MS.gene27924:intron | 50.0% | |
| TATAGCTCAAGGGTTGGGTC+CGG | - | chr4.4:12451502-12451521 | MS.gene27924:CDS | 50.0% | |
| TCACTGATACTGTCTTCGCC+AGG | - | chr4.4:12450648-12450667 | MS.gene27924:intron | 50.0% | |
| TCGCTCAGCAAATGGCAAGT+GGG | + | chr4.4:12451252-12451271 | None:intergenic | 50.0% | |
| TCTAACACACCTTTGCTGGC+TGG | - | chr4.4:12448312-12448331 | MS.gene27924:intron | 50.0% | |
| TGAAAACAGGAGGGCGAACT+GGG | - | chr4.4:12450621-12450640 | MS.gene27924:intron | 50.0% | |
| TGGTGTGAAATCGCGTCATG+TGG | - | chr4.4:12449609-12449628 | MS.gene27924:intron | 50.0% | |
| TGTGCCTACTATGACAGTGG+TGG | + | chr4.4:12450507-12450526 | None:intergenic | 50.0% | |
| TTGAGCTACCCAACCCTTGA+GGG | - | chr4.4:12451575-12451594 | MS.gene27924:intron | 50.0% | |
| ! | GATGCTGATGGACACAGTCT+TGG | - | chr4.4:12450813-12450832 | MS.gene27924:intron | 50.0% |
| ! | GTGCATCTGCTCCATTTTGG+CGG | - | chr4.4:12447709-12447728 | MS.gene27924:intron | 50.0% |
| ! | TCTGATGCTTTTCCAGGTCC+GGG | - | chr4.4:12451220-12451239 | MS.gene27924:intron | 50.0% |
| ! | TGGGTGCATCTGCTCCATTT+TGG | - | chr4.4:12447706-12447725 | MS.gene27924:intron | 50.0% |
| ! | TTCCTTTTCCTCGGTTGCAG+CGG | + | chr4.4:12451904-12451923 | None:intergenic | 50.0% |
| AGAGGTCTTCGGTTCAAGCC+CGG | + | chr4.4:12451466-12451485 | None:intergenic | 55.0% | |
| ATAGCTCAAGGGTTGGGTCC+GGG | - | chr4.4:12451503-12451522 | MS.gene27924:CDS | 55.0% | |
| CGGCTTACAACTGTGGTTCC+TGG | - | chr4.4:12450305-12450324 | MS.gene27924:CDS | 55.0% | |
| CTCAGTTGCAGTGAGGACTG+AGG | - | chr4.4:12450709-12450728 | MS.gene27924:intron | 55.0% | |
| CTCGCTCAGCAAATGGCAAG+TGG | + | chr4.4:12451253-12451272 | None:intergenic | 55.0% | |
| GGACTGAGGATCAGGTGTAC+TGG | - | chr4.4:12450723-12450742 | MS.gene27924:intron | 55.0% | |
| GGACTGCAACCATCTTCCCT+GGG | + | chr4.4:12447483-12447502 | None:intergenic | 55.0% | |
| GTGAAAACAGGAGGGCGAAC+TGG | - | chr4.4:12450620-12450639 | MS.gene27924:intron | 55.0% | |
| GTTGAGCTACCCAACCCTTG+AGG | - | chr4.4:12451574-12451593 | MS.gene27924:intron | 55.0% | |
| TACAGGTTACTGGGGACCCA+GGG | - | chr4.4:12447464-12447483 | MS.gene27924:intron | 55.0% | |
| TGCAGTGAGGACTGAGGATC+AGG | - | chr4.4:12450715-12450734 | MS.gene27924:intron | 55.0% | |
| TGGACTGCAACCATCTTCCC+TGG | + | chr4.4:12447484-12447503 | None:intergenic | 55.0% | |
| TTACAGGTTACTGGGGACCC+AGG | - | chr4.4:12447463-12447482 | MS.gene27924:intron | 55.0% | |
| TTCGGTTCAAGCCCGGACAA+AGG | + | chr4.4:12451459-12451478 | None:intergenic | 55.0% | |
| !! | AGTGGGTTATATCCCGGACC+TGG | + | chr4.4:12451235-12451254 | None:intergenic | 55.0% |
| AAGGCTGCACCAGCCAGCAA+AGG | + | chr4.4:12448324-12448343 | None:intergenic | 60.0% | |
| ATCCTTTGCCGCTGCAACCG+AGG | - | chr4.4:12451893-12451912 | MS.gene27924:CDS | 60.0% | |
| TACTGGGGACCCAGGGAAGA+TGG | - | chr4.4:12447471-12447490 | MS.gene27924:intron | 60.0% | |
| TGCAGCGGCAAAGGATTCGC+AGG | + | chr4.4:12451889-12451908 | None:intergenic | 60.0% | |
| TGCCGCTGCAACCGAGGAAA+AGG | - | chr4.4:12451899-12451918 | MS.gene27924:CDS | 60.0% | |
| TGTATGCACCCGGCCACAAC+AGG | - | chr4.4:12450866-12450885 | MS.gene27924:intron | 60.0% | |
| TTCCTCGGTTGCAGCGGCAA+AGG | + | chr4.4:12451898-12451917 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 12447304 | 12451926 | 12447304 | ID=MS.gene27924 |
| chr4.4 | mRNA | 12447304 | 12451926 | 12447304 | ID=MS.gene27924.t1;Parent=MS.gene27924 |
| chr4.4 | exon | 12451787 | 12451926 | 12451787 | ID=MS.gene27924.t1.exon1;Parent=MS.gene27924.t1 |
| chr4.4 | CDS | 12451787 | 12451926 | 12451787 | ID=cds.MS.gene27924.t1;Parent=MS.gene27924.t1 |
| chr4.4 | exon | 12451677 | 12451761 | 12451677 | ID=MS.gene27924.t1.exon2;Parent=MS.gene27924.t1 |
| chr4.4 | CDS | 12451677 | 12451761 | 12451677 | ID=cds.MS.gene27924.t1;Parent=MS.gene27924.t1 |
| chr4.4 | exon | 12451394 | 12451546 | 12451394 | ID=MS.gene27924.t1.exon3;Parent=MS.gene27924.t1 |
| chr4.4 | CDS | 12451394 | 12451546 | 12451394 | ID=cds.MS.gene27924.t1;Parent=MS.gene27924.t1 |
| chr4.4 | exon | 12450262 | 12450348 | 12450262 | ID=MS.gene27924.t1.exon4;Parent=MS.gene27924.t1 |
| chr4.4 | CDS | 12450262 | 12450348 | 12450262 | ID=cds.MS.gene27924.t1;Parent=MS.gene27924.t1 |
| chr4.4 | exon | 12449086 | 12449190 | 12449086 | ID=MS.gene27924.t1.exon5;Parent=MS.gene27924.t1 |
| chr4.4 | CDS | 12449086 | 12449190 | 12449086 | ID=cds.MS.gene27924.t1;Parent=MS.gene27924.t1 |
| chr4.4 | exon | 12448842 | 12448964 | 12448842 | ID=MS.gene27924.t1.exon6;Parent=MS.gene27924.t1 |
| chr4.4 | CDS | 12448842 | 12448964 | 12448842 | ID=cds.MS.gene27924.t1;Parent=MS.gene27924.t1 |
| chr4.4 | exon | 12447842 | 12447994 | 12447842 | ID=MS.gene27924.t1.exon7;Parent=MS.gene27924.t1 |
| chr4.4 | CDS | 12447842 | 12447994 | 12447842 | ID=cds.MS.gene27924.t1;Parent=MS.gene27924.t1 |
| chr4.4 | exon | 12447304 | 12447363 | 12447304 | ID=MS.gene27924.t1.exon8;Parent=MS.gene27924.t1 |
| chr4.4 | CDS | 12447304 | 12447363 | 12447304 | ID=cds.MS.gene27924.t1;Parent=MS.gene27924.t1 |
| Gene Sequence |
| Protein sequence |
