Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28980.t1 | XP_003607353.1 | 95 | 318 | 16 | 0 | 1 | 318 | 1 | 318 | 1.00E-156 | 562.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28980.t1 | B7FKU1 | 95.0 | 318 | 16 | 0 | 1 | 318 | 1 | 318 | 7.5e-157 | 562.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049293 | MS.gene28980 | -0.801346 | 9.40E-49 | -1.69E-46 |
| MS.gene049378 | MS.gene28980 | 0.807106 | 5.94E-50 | -1.69E-46 |
| MS.gene051903 | MS.gene28980 | 0.801885 | 7.29E-49 | -1.69E-46 |
| MS.gene052176 | MS.gene28980 | 0.827992 | 1.15E-54 | -1.69E-46 |
| MS.gene052302 | MS.gene28980 | 0.818575 | 1.82E-52 | -1.69E-46 |
| MS.gene052336 | MS.gene28980 | 0.873079 | 1.94E-67 | -1.69E-46 |
| MS.gene052376 | MS.gene28980 | 0.818879 | 1.56E-52 | -1.69E-46 |
| MS.gene052502 | MS.gene28980 | 0.80009 | 1.70E-48 | -1.69E-46 |
| MS.gene052586 | MS.gene28980 | 0.805882 | 1.08E-49 | -1.69E-46 |
| MS.gene052818 | MS.gene28980 | -0.802575 | 5.26E-49 | -1.69E-46 |
| MS.gene053045 | MS.gene28980 | 0.808337 | 3.25E-50 | -1.69E-46 |
| MS.gene053188 | MS.gene28980 | 0.807126 | 5.89E-50 | -1.69E-46 |
| MS.gene053216 | MS.gene28980 | 0.801482 | 8.82E-49 | -1.69E-46 |
| MS.gene053294 | MS.gene28980 | 0.820385 | 7.06E-53 | -1.69E-46 |
| MS.gene053963 | MS.gene28980 | 0.855076 | 8.04E-62 | -1.69E-46 |
| MS.gene054222 | MS.gene28980 | 0.804658 | 1.94E-49 | -1.69E-46 |
| MS.gene056068 | MS.gene28980 | 0.801352 | 9.38E-49 | -1.69E-46 |
| MS.gene056091 | MS.gene28980 | 0.801304 | 9.59E-49 | -1.69E-46 |
| MS.gene05659 | MS.gene28980 | 0.80228 | 6.05E-49 | -1.69E-46 |
| MS.gene057079 | MS.gene28980 | 0.823402 | 1.41E-53 | -1.69E-46 |
| MS.gene05795 | MS.gene28980 | 0.820612 | 6.26E-53 | -1.69E-46 |
| MS.gene057999 | MS.gene28980 | 0.809219 | 2.11E-50 | -1.69E-46 |
| MS.gene058238 | MS.gene28980 | 0.812742 | 3.64E-51 | -1.69E-46 |
| MS.gene058498 | MS.gene28980 | 0.816821 | 4.54E-52 | -1.69E-46 |
| MS.gene058500 | MS.gene28980 | 0.805035 | 1.62E-49 | -1.69E-46 |
| MS.gene060297 | MS.gene28980 | 0.849491 | 3.13E-60 | -1.69E-46 |
| MS.gene060586 | MS.gene28980 | 0.805621 | 1.22E-49 | -1.69E-46 |
| MS.gene060879 | MS.gene28980 | 0.813375 | 2.64E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28980.t1 | MTR_4g076880 | 97.484 | 318 | 8 | 0 | 1 | 318 | 1 | 318 | 0.0 | 627 |
| MS.gene28980.t1 | MTR_1g055160 | 93.417 | 319 | 19 | 2 | 1 | 318 | 1 | 318 | 0.0 | 600 |
| MS.gene28980.t1 | MTR_1g055160 | 92.790 | 319 | 19 | 3 | 1 | 318 | 1 | 316 | 0.0 | 592 |
| MS.gene28980.t1 | MTR_1g055145 | 83.529 | 85 | 14 | 0 | 133 | 217 | 196 | 280 | 2.29e-44 | 153 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28980.t1 | AT3G13410 | 51.250 | 320 | 144 | 8 | 3 | 318 | 9 | 320 | 8.74e-102 | 301 |
| MS.gene28980.t1 | AT1G55546 | 56.383 | 94 | 37 | 3 | 20 | 113 | 40 | 129 | 1.08e-23 | 94.7 |
Find 76 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGAAGACTCATTGGTTTC+AGG | 0.174899 | 4.2:-32784395 | MS.gene28980:CDS |
| GTGGCTCTCTTCCTTCTTCT+TGG | 0.191358 | 4.2:+32784151 | None:intergenic |
| ACGGACTTTGCTAGGTCTTT+TGG | 0.237765 | 4.2:+32785012 | None:intergenic |
| CAATCCAGTATCCTTCTTAT+AGG | 0.262025 | 4.2:-32783884 | MS.gene28980:CDS |
| CCAGCTTAAATCATCACTTT+TGG | 0.275529 | 4.2:-32783787 | MS.gene28980:CDS |
| TTCCTTCTTCTTGGTCAAAT+AGG | 0.287794 | 4.2:+32784160 | None:intergenic |
| GTGGCGCCTCAAATCTTGTT+GGG | 0.319930 | 4.2:+32782458 | None:intergenic |
| GTGCAAAGGGAAGAAATTTC+AGG | 0.329628 | 4.2:-32784845 | MS.gene28980:CDS |
| ATCAGCTCTGTAGAGGAATC+TGG | 0.330362 | 4.2:-32783948 | MS.gene28980:CDS |
| GAAGCCTGCGGAGATGATTT+AGG | 0.333542 | 4.2:-32784365 | MS.gene28980:CDS |
| GAAGGAGTCTGTTAATTATC+AGG | 0.343914 | 4.2:-32785043 | MS.gene28980:CDS |
| TGCGGAGATGATTTAGGAAT+TGG | 0.347460 | 4.2:-32784359 | MS.gene28980:CDS |
| CCACAAAGGGAAAACAGATT+TGG | 0.378624 | 4.2:-32784132 | MS.gene28980:CDS |
| AATCCAGTATCCTTCTTATA+GGG | 0.385077 | 4.2:-32783883 | MS.gene28980:CDS |
| GGAATTGATAAAACTCCGTT+TGG | 0.385500 | 4.2:+32785399 | None:intergenic |
| GATCCCTATAAGAAGGATAC+TGG | 0.395705 | 4.2:+32783880 | None:intergenic |
| TTCCTTGGATCTTGCTCCAT+GGG | 0.398546 | 4.2:-32784326 | MS.gene28980:CDS |
| TGTGAACTTGGAAGACTCAT+TGG | 0.398899 | 4.2:-32784402 | MS.gene28980:CDS |
| CTACTGTTCCCGCCTTCCTT+TGG | 0.401529 | 4.2:-32785371 | MS.gene28980:CDS |
| TCCATCACAAGCTGTAGAAT+TGG | 0.403651 | 4.2:+32783815 | None:intergenic |
| ATTGGCAACGTTGCTTTCCT+TGG | 0.404386 | 4.2:-32784341 | MS.gene28980:CDS |
| TTTCTAGCAGAAAGTACATC+AGG | 0.409982 | 4.2:-32783849 | MS.gene28980:CDS |
| TGTGGCGCCTCAAATCTTGT+TGG | 0.413846 | 4.2:+32782457 | None:intergenic |
| CTTTGTAGGGTCTCAGAGAA+TGG | 0.418976 | 4.2:-32785069 | MS.gene28980:intron |
| TTTCCTTGGATCTTGCTCCA+TGG | 0.433869 | 4.2:-32784327 | MS.gene28980:CDS |
| CAGATAAAACGGACTTTGCT+AGG | 0.448555 | 4.2:+32785004 | None:intergenic |
| AGCATCAGAGGATGTGAACT+TGG | 0.456717 | 4.2:-32784414 | MS.gene28980:CDS |
| GATCTGGCACTTCTATTTGT+CGG | 0.459356 | 4.2:-32784814 | MS.gene28980:CDS |
| TCCTCTGATGCTGAAACATA+AGG | 0.468218 | 4.2:+32784425 | None:intergenic |
| ATCGGGCCTTTGCTGTATGA+TGG | 0.483662 | 4.2:-32782491 | MS.gene28980:CDS |
| GGATCTTGCTCCATGGGTAA+TGG | 0.485580 | 4.2:-32784320 | MS.gene28980:CDS |
| AGAAGGAAGAGAGCCACAAA+GGG | 0.490715 | 4.2:-32784145 | MS.gene28980:CDS |
| TGACTCCCCAACAAGATTTG+AGG | 0.493336 | 4.2:-32782464 | MS.gene28980:CDS |
| TTGTATTTGGATAGTGCAAA+GGG | 0.493394 | 4.2:-32784858 | MS.gene28980:intron |
| TCAGCTCTGTAGAGGAATCT+GGG | 0.496576 | 4.2:-32783947 | MS.gene28980:CDS |
| TTCGCGATTTCCATTACCCA+TGG | 0.501398 | 4.2:+32784310 | None:intergenic |
| ATTTCAGGATCCTCTCGATC+TGG | 0.506004 | 4.2:-32784830 | MS.gene28980:CDS |
| CCAGCCTGCTTCAGATAAAA+CGG | 0.506908 | 4.2:+32784993 | None:intergenic |
| TTTGTATTTGGATAGTGCAA+AGG | 0.521221 | 4.2:-32784859 | MS.gene28980:intron |
| AAGAAGGAAGAGAGCCACAA+AGG | 0.528123 | 4.2:-32784146 | MS.gene28980:CDS |
| CTTTGCAGATCCCTATAAGA+AGG | 0.530818 | 4.2:+32783873 | None:intergenic |
| TGTGAGATCCAACACTTCCA+TGG | 0.530939 | 4.2:-32784453 | MS.gene28980:CDS |
| TCCTTATGTTTCAGCATCAG+AGG | 0.531228 | 4.2:-32784426 | MS.gene28980:CDS |
| GGTCTCAGAGAATGGATTGA+AGG | 0.533812 | 4.2:-32785061 | MS.gene28980:CDS |
| AGGAAACGCCATGGAAGTGT+TGG | 0.543699 | 4.2:+32784445 | None:intergenic |
| TCGGGCCTTTGCTGTATGAT+GGG | 0.544701 | 4.2:-32782490 | MS.gene28980:CDS |
| GGCCTATTTGACCAAGAAGA+AGG | 0.544862 | 4.2:-32784162 | MS.gene28980:CDS |
| CTCTACAGAGCTGATAAGCT+CGG | 0.545689 | 4.2:+32783956 | None:intergenic |
| GAAGGCGGGAACAGTAGCAG+AGG | 0.554282 | 4.2:+32785377 | None:intergenic |
| CCAAAAGTGATGATTTAAGC+TGG | 0.555189 | 4.2:+32783787 | None:intergenic |
| TGAGAAGACCAAAGGAAGGC+GGG | 0.556838 | 4.2:+32785363 | None:intergenic |
| TGGCGCCTCAAATCTTGTTG+GGG | 0.563003 | 4.2:+32782459 | None:intergenic |
| ACCAATTCTACAGCTTGTGA+TGG | 0.566623 | 4.2:-32783816 | MS.gene28980:CDS |
| GCAGAAAGTACATCAGGGAA+TGG | 0.568177 | 4.2:-32783843 | MS.gene28980:CDS |
| AATTCCTAAATCATCTCCGC+AGG | 0.570593 | 4.2:+32784361 | None:intergenic |
| ACTTCTATTTGTCGGTGGAG+AGG | 0.582571 | 4.2:-32784806 | MS.gene28980:intron |
| GATTTGGTTGTGTTCTGCAA+TGG | 0.583901 | 4.2:-32784116 | MS.gene28980:CDS |
| AGCTCTTTCATACTTGCTCA+AGG | 0.589456 | 4.2:-32784603 | MS.gene28980:intron |
| CGAGCTTATCAGCTCTGTAG+AGG | 0.590194 | 4.2:-32783955 | MS.gene28980:CDS |
| CTTCTTATAGGGATCTGCAA+AGG | 0.590622 | 4.2:-32783872 | MS.gene28980:CDS |
| CTGGCACTTCTATTTGTCGG+TGG | 0.593795 | 4.2:-32784811 | MS.gene28980:CDS |
| CAAATGGATCATCACTCTTG+TGG | 0.596002 | 4.2:+32782439 | None:intergenic |
| TACCCATGGAGCAAGATCCA+AGG | 0.604497 | 4.2:+32784324 | None:intergenic |
| TTCAGAGGCGGCGATGATGG+TGG | 0.607460 | 4.2:-32785457 | None:intergenic |
| TCAGGATTCGCTGAAGCCTG+CGG | 0.621670 | 4.2:-32784377 | MS.gene28980:CDS |
| AATAGAAGTGCCAGATCGAG+AGG | 0.624175 | 4.2:+32784820 | None:intergenic |
| ATGAGAAGACCAAAGGAAGG+CGG | 0.624433 | 4.2:+32785362 | None:intergenic |
| GTTGACAGAACACAATCTGA+AGG | 0.628507 | 4.2:-32784074 | MS.gene28980:intron |
| GATTATAATGAGAAGACCAA+AGG | 0.630483 | 4.2:+32785355 | None:intergenic |
| AAGGCGGGAACAGTAGCAGA+GGG | 0.635922 | 4.2:+32785378 | None:intergenic |
| CAATTCCCATCATACAGCAA+AGG | 0.640893 | 4.2:+32782485 | None:intergenic |
| TTCTAGCAGAAAGTACATCA+GGG | 0.642277 | 4.2:-32783848 | MS.gene28980:CDS |
| ATAATGAGAAGACCAAAGGA+AGG | 0.656424 | 4.2:+32785359 | None:intergenic |
| CAGCTCTGTAGAGGAATCTG+GGG | 0.672726 | 4.2:-32783946 | MS.gene28980:CDS |
| TTTATGTGTCAGATATCTCG+AGG | 0.673512 | 4.2:-32783908 | MS.gene28980:CDS |
| TGAAACATAAGGAAACGCCA+TGG | 0.719233 | 4.2:+32784436 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTAAAAATAATACAGAAAT+AGG | - | chr4.2:32784859-32784878 | MS.gene28980:intron | 15.0% |
| !!! | ATTATGTTTTATTCATAAGA+AGG | + | chr4.2:32784245-32784264 | None:intergenic | 15.0% |
| !!! | TTTGTTGATAATTTTGATAT+CGG | - | chr4.2:32785385-32785404 | MS.gene28980:CDS | 15.0% |
| !! | ACAGAAATAGGAAAAAAAAA+AGG | - | chr4.2:32784871-32784890 | MS.gene28980:intron | 20.0% |
| !! | ATGACCAATTATGAAATATT+AGG | - | chr4.2:32783656-32783675 | MS.gene28980:intron | 20.0% |
| !! | CAGAAATAGGAAAAAAAAAA+GGG | - | chr4.2:32784872-32784891 | MS.gene28980:intron | 20.0% |
| !! | GATAATGATATAATCTACAA+TGG | - | chr4.2:32785234-32785253 | MS.gene28980:intron | 20.0% |
| !! | GTAGATTATATCATTATCTT+AGG | + | chr4.2:32785232-32785251 | None:intergenic | 20.0% |
| !! | TAAATGATGCTCATATTATT+TGG | + | chr4.2:32784777-32784796 | None:intergenic | 20.0% |
| !! | TATGTATACCATATAAGAAT+GGG | - | chr4.2:32782726-32782745 | MS.gene28980:intron | 20.0% |
| !! | TCATTGATATAAATTCTTAG+TGG | + | chr4.2:32785152-32785171 | None:intergenic | 20.0% |
| !! | TCCAAATACAAAATTGAAAA+AGG | + | chr4.2:32783027-32783046 | None:intergenic | 20.0% |
| !! | TCTTGTATCATTAAAATTTG+AGG | + | chr4.2:32784417-32784436 | None:intergenic | 20.0% |
| !! | TTAATGAATTGAAAAGTGAT+TGG | + | chr4.2:32782573-32782592 | None:intergenic | 20.0% |
| !!! | CAGTTTTCAGATATAATTAA+CGG | + | chr4.2:32782780-32782799 | None:intergenic | 20.0% |
| !!! | TCCTTTTTCAATTTTGTATT+TGG | - | chr4.2:32783023-32783042 | MS.gene28980:intron | 20.0% |
| !!! | TTGTTGATAATTTTGATATC+GGG | - | chr4.2:32785386-32785405 | MS.gene28980:CDS | 20.0% |
| ! | AATGAATTGTAATTCAGATC+TGG | - | chr4.2:32785167-32785186 | MS.gene28980:intron | 25.0% |
| ! | AGATAATTTAATTACGGAGA+AGG | + | chr4.2:32784327-32784346 | None:intergenic | 25.0% |
| ! | AGGACCTAATATTTCATAAT+TGG | + | chr4.2:32783663-32783682 | None:intergenic | 25.0% |
| ! | ATGTATACCATATAAGAATG+GGG | - | chr4.2:32782727-32782746 | MS.gene28980:intron | 25.0% |
| ! | ATTGTCCATTATAACTTTAC+AGG | - | chr4.2:32783711-32783730 | MS.gene28980:intron | 25.0% |
| ! | GAAGTAACATCAGATATTAA+TGG | + | chr4.2:32785270-32785289 | None:intergenic | 25.0% |
| ! | GGTACCAGATAATTTAATTA+CGG | + | chr4.2:32784333-32784352 | None:intergenic | 25.0% |
| ! | GTATGTATACCATATAAGAA+TGG | - | chr4.2:32782725-32782744 | MS.gene28980:intron | 25.0% |
| ! | TAACATCAGATATTAATGGA+AGG | + | chr4.2:32785266-32785285 | None:intergenic | 25.0% |
| ! | TTCTCCGTAATTAAATTATC+TGG | - | chr4.2:32784326-32784345 | MS.gene28980:CDS | 25.0% |
| !! | AACTGTGCAATTAGTTATTT+TGG | - | chr4.2:32784475-32784494 | MS.gene28980:intron | 25.0% |
| !! | CATGCATGTTGTATATTTTT+AGG | - | chr4.2:32783904-32783923 | MS.gene28980:CDS | 25.0% |
| !!! | CAGTAAATTGTAACTTGTTA+TGG | + | chr4.2:32784907-32784926 | None:intergenic | 25.0% |
| !!! | TCAACATTTTTTGAATCTTG+AGG | + | chr4.2:32783805-32783824 | None:intergenic | 25.0% |
| AACATTATGATATCCTGATG+AGG | - | chr4.2:32785334-32785353 | MS.gene28980:intron | 30.0% | |
| AACTAATTGCACAGTTTGTA+GGG | + | chr4.2:32784471-32784490 | None:intergenic | 30.0% | |
| AAGAGACCAAAACTGAATAA+AGG | + | chr4.2:32782971-32782990 | None:intergenic | 30.0% | |
| AATCCAGTATCCTTCTTATA+GGG | - | chr4.2:32784011-32784030 | MS.gene28980:intron | 30.0% | |
| AATGGAACATGCAAAAAAAG+TGG | + | chr4.2:32784283-32784302 | None:intergenic | 30.0% | |
| ATAGGCCTGTAAAGTTATAA+TGG | + | chr4.2:32783719-32783738 | None:intergenic | 30.0% | |
| ATGTTCATGTATCAGATTCA+AGG | + | chr4.2:32784576-32784595 | None:intergenic | 30.0% | |
| ATTTAATTACGGAGAAGGAA+AGG | + | chr4.2:32784322-32784341 | None:intergenic | 30.0% | |
| CAAGACAACAGATGTAAAAT+AGG | + | chr4.2:32783159-32783178 | None:intergenic | 30.0% | |
| CATCAGGATATCATAATGTT+GGG | + | chr4.2:32785334-32785353 | None:intergenic | 30.0% | |
| CTTCTTAAATTAAGTGTGCA+AGG | + | chr4.2:32784626-32784645 | None:intergenic | 30.0% | |
| GATTATAATGAGAAGACCAA+AGG | + | chr4.2:32782542-32782561 | None:intergenic | 30.0% | |
| GGTAATATCATTTAAGCGTT+TGG | - | chr4.2:32783109-32783128 | MS.gene28980:intron | 30.0% | |
| TAACTAATTGCACAGTTTGT+AGG | + | chr4.2:32784472-32784491 | None:intergenic | 30.0% | |
| TACATCTACTTCAGAGTTAT+GGG | - | chr4.2:32783843-32783862 | MS.gene28980:CDS | 30.0% | |
| TCATCAGGATATCATAATGT+TGG | + | chr4.2:32785335-32785354 | None:intergenic | 30.0% | |
| TTATCAACAAAACTATTCCC+TGG | + | chr4.2:32785376-32785395 | None:intergenic | 30.0% | |
| TTGTATTTGGATAGTGCAAA+GGG | - | chr4.2:32783036-32783055 | MS.gene28980:intron | 30.0% | |
| TTTAATTACGGAGAAGGAAA+GGG | + | chr4.2:32784321-32784340 | None:intergenic | 30.0% | |
| TTTAATTGGACACCTAAATG+AGG | - | chr4.2:32785038-32785057 | MS.gene28980:CDS | 30.0% | |
| TTTGTATTTGGATAGTGCAA+AGG | - | chr4.2:32783035-32783054 | MS.gene28980:intron | 30.0% | |
| ! | ATATCTGACTGATTCTTTGT+AGG | - | chr4.2:32782811-32782830 | MS.gene28980:intron | 30.0% |
| ! | TATCTGACTGATTCTTTGTA+GGG | - | chr4.2:32782812-32782831 | MS.gene28980:intron | 30.0% |
| ! | TGATAGCCTTTATTCAGTTT+TGG | - | chr4.2:32782962-32782981 | MS.gene28980:intron | 30.0% |
| !! | CTTAAATCATCACTTTTGGA+GGG | - | chr4.2:32784111-32784130 | MS.gene28980:CDS | 30.0% |
| !!! | GTTACTTTTGTGATAATCCA+GGG | - | chr4.2:32785356-32785375 | MS.gene28980:CDS | 30.0% |
| !!! | TATACGTCTTGTTTGGATTT+TGG | - | chr4.2:32784725-32784744 | MS.gene28980:intron | 30.0% |
| AACAAGACGTATACCATTTG+AGG | + | chr4.2:32784718-32784737 | None:intergenic | 35.0% | |
| ATAATGAGAAGACCAAAGGA+AGG | + | chr4.2:32782538-32782557 | None:intergenic | 35.0% | |
| ATCACAAAAGTAACCTCATC+AGG | + | chr4.2:32785350-32785369 | None:intergenic | 35.0% | |
| ATGCATATGAAGTGTACTTG+TGG | + | chr4.2:32784354-32784373 | None:intergenic | 35.0% | |
| ATTAGACACGAGATACACAA+AGG | - | chr4.2:32785101-32785120 | MS.gene28980:intron | 35.0% | |
| CAAGGAAAGACAGTTATACA+AGG | + | chr4.2:32784541-32784560 | None:intergenic | 35.0% | |
| CAATCCAGTATCCTTCTTAT+AGG | - | chr4.2:32784010-32784029 | MS.gene28980:intron | 35.0% | |
| CCAAAAGTGATGATTTAAGC+TGG | + | chr4.2:32784110-32784129 | None:intergenic | 35.0% | |
| CTATAGACAGACTATTGTTG+AGG | - | chr4.2:32784661-32784680 | MS.gene28980:intron | 35.0% | |
| CTCAACAATAGTCTGTCTAT+AGG | + | chr4.2:32784663-32784682 | None:intergenic | 35.0% | |
| CTTCTACAAATACGCTAATC+TGG | - | chr4.2:32784207-32784226 | MS.gene28980:intron | 35.0% | |
| GAAGGAGTCTGTTAATTATC+AGG | - | chr4.2:32782851-32782870 | MS.gene28980:intron | 35.0% | |
| GGAATTGATAAAACTCCGTT+TGG | + | chr4.2:32782498-32782517 | None:intergenic | 35.0% | |
| GGGAAAAACGGAAGAAAAAA+TGG | + | chr4.2:32784301-32784320 | None:intergenic | 35.0% | |
| GTACATCTACTTCAGAGTTA+TGG | - | chr4.2:32783842-32783861 | MS.gene28980:CDS | 35.0% | |
| GTAGGGAAGCAAATAAAGAA+AGG | + | chr4.2:32784454-32784473 | None:intergenic | 35.0% | |
| GTCTGAATAGTTCAAATGCA+GGG | + | chr4.2:32784755-32784774 | None:intergenic | 35.0% | |
| TATTAGGTCCTTCCTTGTAA+TGG | - | chr4.2:32783672-32783691 | MS.gene28980:intron | 35.0% | |
| TCCTAAGCGCTTGTATAAAT+GGG | + | chr4.2:32784160-32784179 | None:intergenic | 35.0% | |
| TGCGTCAAAGATCCTAATTA+CGG | + | chr4.2:32782663-32782682 | None:intergenic | 35.0% | |
| TGTCTATAGGCATGTATACA+AGG | + | chr4.2:32784650-32784669 | None:intergenic | 35.0% | |
| TTCCTTCTTCTTGGTCAAAT+AGG | + | chr4.2:32783737-32783756 | None:intergenic | 35.0% | |
| TTTATGTGTCAGATATCTCG+AGG | - | chr4.2:32783986-32784005 | MS.gene28980:intron | 35.0% | |
| TTTCTGTGTAAACCTGATTC+AGG | - | chr4.2:32783350-32783369 | MS.gene28980:intron | 35.0% | |
| ! | AACTCTTTTGTGTAGTATCG+TGG | + | chr4.2:32784951-32784970 | None:intergenic | 35.0% |
| ! | CAAATGGTATACGTCTTGTT+TGG | - | chr4.2:32784718-32784737 | MS.gene28980:intron | 35.0% |
| ! | CCAGCTTAAATCATCACTTT+TGG | - | chr4.2:32784107-32784126 | MS.gene28980:CDS | 35.0% |
| ! | TGACTTTGTTGATAGAGTGT+TGG | - | chr4.2:32785303-32785322 | MS.gene28980:intron | 35.0% |
| ! | TTCTAGCAGAAAGTACATCA+GGG | - | chr4.2:32784046-32784065 | MS.gene28980:intron | 35.0% |
| ! | TTCTATCATTGCTGTTACTG+CGG | - | chr4.2:32782989-32783008 | MS.gene28980:intron | 35.0% |
| ! | TTTCTAGCAGAAAGTACATC+AGG | - | chr4.2:32784045-32784064 | MS.gene28980:intron | 35.0% |
| !! | GCTTAAATCATCACTTTTGG+AGG | - | chr4.2:32784110-32784129 | MS.gene28980:CDS | 35.0% |
| !! | GCTTCACTTTTCATTCCAAA+CGG | - | chr4.2:32782480-32782499 | MS.gene28980:CDS | 35.0% |
| !!! | GGTTACTTTTGTGATAATCC+AGG | - | chr4.2:32785355-32785374 | MS.gene28980:CDS | 35.0% |
| AACTTCTAGCCACTATTGCA+TGG | - | chr4.2:32784508-32784527 | MS.gene28980:intron | 40.0% | |
| AAGAGTCCTGTTCATGACAA+TGG | + | chr4.2:32783420-32783439 | None:intergenic | 40.0% | |
| AATTCCTAAATCATCTCCGC+AGG | + | chr4.2:32783536-32783555 | None:intergenic | 40.0% | |
| ACAACATGCATGAGAACACT+CGG | + | chr4.2:32783896-32783915 | None:intergenic | 40.0% | |
| ACCAATTCTACAGCTTGTGA+TGG | - | chr4.2:32784078-32784097 | MS.gene28980:CDS | 40.0% | |
| ACCTGATTCAGGATAGCTAA+TGG | - | chr4.2:32783361-32783380 | MS.gene28980:intron | 40.0% | |
| ACGTGTAAGACACCTCATTT+AGG | + | chr4.2:32785053-32785072 | None:intergenic | 40.0% | |
| AGCATCATGCAACCATTACA+AGG | + | chr4.2:32783687-32783706 | None:intergenic | 40.0% | |
| AGCTCTTTCATACTTGCTCA+AGG | - | chr4.2:32783291-32783310 | MS.gene28980:intron | 40.0% | |
| CAATTCCCATCATACAGCAA+AGG | + | chr4.2:32785412-32785431 | None:intergenic | 40.0% | |
| CACTTCATATGCATGCTTGT+AGG | - | chr4.2:32784360-32784379 | MS.gene28980:CDS | 40.0% | |
| CATTCTCCATTGTCATGAAC+AGG | - | chr4.2:32783411-32783430 | MS.gene28980:intron | 40.0% | |
| CCACAAAGGGAAAACAGATT+TGG | - | chr4.2:32783762-32783781 | MS.gene28980:intron | 40.0% | |
| CTAGATGCTGCATGTAGTAA+TGG | - | chr4.2:32782699-32782718 | MS.gene28980:intron | 40.0% | |
| CTCCTAAGCGCTTGTATAAA+TGG | + | chr4.2:32784161-32784180 | None:intergenic | 40.0% | |
| CTTAGGAGTTATCTCTTGCT+AGG | + | chr4.2:32785215-32785234 | None:intergenic | 40.0% | |
| CTTCTTATAGGGATCTGCAA+AGG | - | chr4.2:32784022-32784041 | MS.gene28980:intron | 40.0% | |
| CTTTGCAGATCCCTATAAGA+AGG | + | chr4.2:32784024-32784043 | None:intergenic | 40.0% | |
| GATCCCTATAAGAAGGATAC+TGG | + | chr4.2:32784017-32784036 | None:intergenic | 40.0% | |
| GATCTGGCACTTCTATTTGT+CGG | - | chr4.2:32783080-32783099 | MS.gene28980:intron | 40.0% | |
| GGCAGATGGTAAGATTATGT+CGG | + | chr4.2:32783875-32783894 | None:intergenic | 40.0% | |
| GGTCTGAATAGTTCAAATGC+AGG | + | chr4.2:32784756-32784775 | None:intergenic | 40.0% | |
| GTCAAAGATCCTAATTACGG+TGG | + | chr4.2:32782660-32782679 | None:intergenic | 40.0% | |
| GTGCAAAGGGAAGAAATTTC+AGG | - | chr4.2:32783049-32783068 | MS.gene28980:intron | 40.0% | |
| GTTGACAGAACACAATCTGA+AGG | - | chr4.2:32783820-32783839 | MS.gene28980:CDS | 40.0% | |
| TCATGCAACCATTACAAGGA+AGG | + | chr4.2:32783683-32783702 | None:intergenic | 40.0% | |
| TCCATCACAAGCTGTAGAAT+TGG | + | chr4.2:32784082-32784101 | None:intergenic | 40.0% | |
| TCCATTAGCTATCCTGAATC+AGG | + | chr4.2:32783365-32783384 | None:intergenic | 40.0% | |
| TCCTCTGATGCTGAAACATA+AGG | + | chr4.2:32783472-32783491 | None:intergenic | 40.0% | |
| TCCTTATGTTTCAGCATCAG+AGG | - | chr4.2:32783468-32783487 | MS.gene28980:intron | 40.0% | |
| TCTGAAGACTGTAACTGCAA+AGG | + | chr4.2:32783244-32783263 | None:intergenic | 40.0% | |
| TGAAACATAAGGAAACGCCA+TGG | + | chr4.2:32783461-32783480 | None:intergenic | 40.0% | |
| TGCATCAACTGATCCTCAAA+TGG | - | chr4.2:32784702-32784721 | MS.gene28980:intron | 40.0% | |
| TGCGGAGATGATTTAGGAAT+TGG | - | chr4.2:32783535-32783554 | MS.gene28980:intron | 40.0% | |
| TGTGAACTTGGAAGACTCAT+TGG | - | chr4.2:32783492-32783511 | MS.gene28980:intron | 40.0% | |
| TGTGCATCCCCATTCTTATA+TGG | + | chr4.2:32782737-32782756 | None:intergenic | 40.0% | |
| TGTGCTAATCCACCGTAATT+AGG | - | chr4.2:32782648-32782667 | MS.gene28980:intron | 40.0% | |
| ! | CAGATAAAACGGACTTTGCT+AGG | + | chr4.2:32782893-32782912 | None:intergenic | 40.0% |
| ! | CCAAATCTGTTTTCCCTTTG+TGG | + | chr4.2:32783765-32783784 | None:intergenic | 40.0% |
| ! | GATTTGGTTGTGTTCTGCAA+TGG | - | chr4.2:32783778-32783797 | MS.gene28980:CDS | 40.0% |
| !! | AAGTCCGTTTTATCTGAAGC+AGG | - | chr4.2:32782897-32782916 | MS.gene28980:intron | 40.0% |
| !! | ACTTTTGGAGGGACTTTTAG+TGG | - | chr4.2:32784122-32784141 | MS.gene28980:CDS | 40.0% |
| !! | GCTCTAATATAGCTCTGACA+CGG | + | chr4.2:32785001-32785020 | None:intergenic | 40.0% |
| !! | TTGGAAGACTCATTGGTTTC+AGG | - | chr4.2:32783499-32783518 | MS.gene28980:intron | 40.0% |
| AAGAAGGAAGAGAGCCACAA+AGG | - | chr4.2:32783748-32783767 | MS.gene28980:intron | 45.0% | |
| ACTTCTATTTGTCGGTGGAG+AGG | - | chr4.2:32783088-32783107 | MS.gene28980:intron | 45.0% | |
| AGAAGGAAGAGAGCCACAAA+GGG | - | chr4.2:32783749-32783768 | MS.gene28980:intron | 45.0% | |
| AGCATCAGAGGATGTGAACT+TGG | - | chr4.2:32783480-32783499 | MS.gene28980:intron | 45.0% | |
| ATCAGCTCTGTAGAGGAATC+TGG | - | chr4.2:32783946-32783965 | MS.gene28980:CDS | 45.0% | |
| ATGAGAAGACCAAAGGAAGG+CGG | + | chr4.2:32782535-32782554 | None:intergenic | 45.0% | |
| ATTTCAGGATCCTCTCGATC+TGG | - | chr4.2:32783064-32783083 | MS.gene28980:intron | 45.0% | |
| CCAGCCTGCTTCAGATAAAA+CGG | + | chr4.2:32782904-32782923 | None:intergenic | 45.0% | |
| CGGAGAAGGAAAGGGAAAAA+CGG | + | chr4.2:32784313-32784332 | None:intergenic | 45.0% | |
| CTCTACAGAGCTGATAAGCT+CGG | + | chr4.2:32783941-32783960 | None:intergenic | 45.0% | |
| CTTTGTAGGGTCTCAGAGAA+TGG | - | chr4.2:32782825-32782844 | MS.gene28980:intron | 45.0% | |
| GCCCATTTATACAAGCGCTT+AGG | - | chr4.2:32784156-32784175 | MS.gene28980:CDS | 45.0% | |
| GGAAAGATGCCATGCAATAG+TGG | + | chr4.2:32784520-32784539 | None:intergenic | 45.0% | |
| GGCCTATTTGACCAAGAAGA+AGG | - | chr4.2:32783732-32783751 | MS.gene28980:intron | 45.0% | |
| GGTGTCTTACACGTGTCATA+CGG | - | chr4.2:32785059-32785078 | MS.gene28980:CDS | 45.0% | |
| GTGTCTTACACGTGTCATAC+GGG | - | chr4.2:32785060-32785079 | MS.gene28980:CDS | 45.0% | |
| TCAAGGACAGCAGTTCTACA+AGG | + | chr4.2:32784559-32784578 | None:intergenic | 45.0% | |
| TCAGCTCTGTAGAGGAATCT+GGG | - | chr4.2:32783947-32783966 | MS.gene28980:CDS | 45.0% | |
| TGACTCCCCAACAAGATTTG+AGG | - | chr4.2:32785430-32785449 | MS.gene28980:CDS | 45.0% | |
| TGTGAGATCCAACACTTCCA+TGG | - | chr4.2:32783441-32783460 | MS.gene28980:intron | 45.0% | |
| TTCCTTGGATCTTGCTCCAT+GGG | - | chr4.2:32783568-32783587 | MS.gene28980:intron | 45.0% | |
| TTCGCGATTTCCATTACCCA+TGG | + | chr4.2:32783587-32783606 | None:intergenic | 45.0% | |
| TTTCCTTGGATCTTGCTCCA+TGG | - | chr4.2:32783567-32783586 | MS.gene28980:intron | 45.0% | |
| ! | ACGGACTTTGCTAGGTCTTT+TGG | + | chr4.2:32782885-32782904 | None:intergenic | 45.0% |
| ! | ATTGGCAACGTTGCTTTCCT+TGG | - | chr4.2:32783553-32783572 | MS.gene28980:intron | 45.0% |
| ! | GCAGAAAGTACATCAGGGAA+TGG | - | chr4.2:32784051-32784070 | MS.gene28980:intron | 45.0% |
| !! | AATAGAAGTGCCAGATCGAG+AGG | + | chr4.2:32783077-32783096 | None:intergenic | 45.0% |
| !! | AGCAGGCTGGTCAAATTTTC+TGG | - | chr4.2:32782914-32782933 | MS.gene28980:intron | 45.0% |
| !! | GGTCTCAGAGAATGGATTGA+AGG | - | chr4.2:32782833-32782852 | MS.gene28980:intron | 45.0% |
| !!! | AAAAAAGAATTATTTTTAAT+TGG | - | chr4.2:32785024-32785043 | MS.gene28980:CDS | 5.0% |
| ATTCCTGTCAACGAGTGCAG+TGG | - | chr4.2:32783188-32783207 | MS.gene28980:intron | 50.0% | |
| CAGCTCTGTAGAGGAATCTG+GGG | - | chr4.2:32783948-32783967 | MS.gene28980:CDS | 50.0% | |
| CGAGCTTATCAGCTCTGTAG+AGG | - | chr4.2:32783939-32783958 | MS.gene28980:CDS | 50.0% | |
| CTGGCACTTCTATTTGTCGG+TGG | - | chr4.2:32783083-32783102 | MS.gene28980:intron | 50.0% | |
| GAAGCCTGCGGAGATGATTT+AGG | - | chr4.2:32783529-32783548 | MS.gene28980:intron | 50.0% | |
| GACGAGTTCTCTCAGAAGCA+AGG | + | chr4.2:32785130-32785149 | None:intergenic | 50.0% | |
| GGATCTTGCTCCATGGGTAA+TGG | - | chr4.2:32783574-32783593 | MS.gene28980:intron | 50.0% | |
| GTGGCGCCTCAAATCTTGTT+GGG | + | chr4.2:32785439-32785458 | None:intergenic | 50.0% | |
| GTGGCTCTCTTCCTTCTTCT+TGG | + | chr4.2:32783746-32783765 | None:intergenic | 50.0% | |
| TACACGTGTCATACGGGTGT+TGG | - | chr4.2:32785066-32785085 | MS.gene28980:intron | 50.0% | |
| TACCCATGGAGCAAGATCCA+AGG | + | chr4.2:32783573-32783592 | None:intergenic | 50.0% | |
| TGAGAAGACCAAAGGAAGGC+GGG | + | chr4.2:32782534-32782553 | None:intergenic | 50.0% | |
| TGGCGCCTCAAATCTTGTTG+GGG | + | chr4.2:32785438-32785457 | None:intergenic | 50.0% | |
| TGTGGCGCCTCAAATCTTGT+TGG | + | chr4.2:32785440-32785459 | None:intergenic | 50.0% | |
| ! | AGGAAACGCCATGGAAGTGT+TGG | + | chr4.2:32783452-32783471 | None:intergenic | 50.0% |
| ! | ATCGGGCCTTTGCTGTATGA+TGG | - | chr4.2:32785403-32785422 | MS.gene28980:CDS | 50.0% |
| ! | GTTGTTGCTTCCCACCAGAA+CGG | - | chr4.2:32784968-32784987 | MS.gene28980:intron | 50.0% |
| ! | TCGGGCCTTTGCTGTATGAT+GGG | - | chr4.2:32785404-32785423 | MS.gene28980:CDS | 50.0% |
| !! | CCGTTTTATCTGAAGCAGGC+TGG | - | chr4.2:32782901-32782920 | MS.gene28980:intron | 50.0% |
| AAGGCGGGAACAGTAGCAGA+GGG | + | chr4.2:32782519-32782538 | None:intergenic | 55.0% | |
| ATGCCACTGCACTCGTTGAC+AGG | + | chr4.2:32783194-32783213 | None:intergenic | 55.0% | |
| CTACTGTTCCCGCCTTCCTT+TGG | - | chr4.2:32782523-32782542 | MS.gene28980:intron | 55.0% | |
| GCATGAGAACACTCGGCAGA+TGG | + | chr4.2:32783889-32783908 | None:intergenic | 55.0% | |
| TCAGGATTCGCTGAAGCCTG+CGG | - | chr4.2:32783517-32783536 | MS.gene28980:intron | 55.0% | |
| ACGGACAGACACCGTTCTGG+TGG | + | chr4.2:32784982-32785001 | None:intergenic | 60.0% | |
| CGGACAGACACCGTTCTGGT+GGG | + | chr4.2:32784981-32785000 | None:intergenic | 60.0% | |
| GAAGGCGGGAACAGTAGCAG+AGG | + | chr4.2:32782520-32782539 | None:intergenic | 60.0% | |
| GACACGGACAGACACCGTTC+TGG | + | chr4.2:32784985-32785004 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 32782450 | 32785466 | 32782450 | ID=MS.gene28980 |
| chr4.2 | mRNA | 32782450 | 32785466 | 32782450 | ID=MS.gene28980.t1;Parent=MS.gene28980 |
| chr4.2 | exon | 32785354 | 32785466 | 32785354 | ID=MS.gene28980.t1.exon1;Parent=MS.gene28980.t1 |
| chr4.2 | CDS | 32785354 | 32785466 | 32785354 | ID=cds.MS.gene28980.t1;Parent=MS.gene28980.t1 |
| chr4.2 | exon | 32784981 | 32785083 | 32784981 | ID=MS.gene28980.t1.exon2;Parent=MS.gene28980.t1 |
| chr4.2 | CDS | 32784981 | 32785083 | 32784981 | ID=cds.MS.gene28980.t1;Parent=MS.gene28980.t1 |
| chr4.2 | exon | 32784807 | 32784866 | 32784807 | ID=MS.gene28980.t1.exon3;Parent=MS.gene28980.t1 |
| chr4.2 | CDS | 32784807 | 32784866 | 32784807 | ID=cds.MS.gene28980.t1;Parent=MS.gene28980.t1 |
| chr4.2 | exon | 32784604 | 32784666 | 32784604 | ID=MS.gene28980.t1.exon4;Parent=MS.gene28980.t1 |
| chr4.2 | CDS | 32784604 | 32784666 | 32784604 | ID=cds.MS.gene28980.t1;Parent=MS.gene28980.t1 |
| chr4.2 | exon | 32784283 | 32784483 | 32784283 | ID=MS.gene28980.t1.exon5;Parent=MS.gene28980.t1 |
| chr4.2 | CDS | 32784283 | 32784483 | 32784283 | ID=cds.MS.gene28980.t1;Parent=MS.gene28980.t1 |
| chr4.2 | exon | 32784075 | 32784183 | 32784075 | ID=MS.gene28980.t1.exon6;Parent=MS.gene28980.t1 |
| chr4.2 | CDS | 32784075 | 32784183 | 32784075 | ID=cds.MS.gene28980.t1;Parent=MS.gene28980.t1 |
| chr4.2 | exon | 32783773 | 32783990 | 32783773 | ID=MS.gene28980.t1.exon7;Parent=MS.gene28980.t1 |
| chr4.2 | CDS | 32783773 | 32783990 | 32783773 | ID=cds.MS.gene28980.t1;Parent=MS.gene28980.t1 |
| chr4.2 | exon | 32782450 | 32782539 | 32782450 | ID=MS.gene28980.t1.exon8;Parent=MS.gene28980.t1 |
| chr4.2 | CDS | 32782450 | 32782539 | 32782450 | ID=cds.MS.gene28980.t1;Parent=MS.gene28980.t1 |
| Gene Sequence |
| Protein sequence |
