Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29843.t1 | XP_013460859.1 | 96.5 | 777 | 26 | 1 | 1 | 777 | 1 | 776 | 0.00E+00 | 1534.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29843.t1 | Q9SGZ5 | 64.4 | 766 | 256 | 8 | 12 | 770 | 5 | 760 | 6.5e-294 | 1011.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29843.t1 | G8A378 | 96.5 | 777 | 26 | 1 | 1 | 777 | 1 | 776 | 0.0e+00 | 1534.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene29843 | MS.gene005527 | PPI |
| MS.gene047087 | MS.gene29843 | PPI |
| MS.gene35037 | MS.gene29843 | PPI |
| MS.gene051339 | MS.gene29843 | PPI |
| MS.gene07041 | MS.gene29843 | PPI |
| MS.gene29843 | MS.gene91308 | PPI |
| MS.gene56021 | MS.gene29843 | PPI |
| MS.gene29843 | MS.gene20796 | PPI |
| MS.gene29843 | MS.gene072706 | PPI |
| MS.gene29843 | MS.gene20846 | PPI |
| MS.gene29843 | MS.gene036268 | PPI |
| MS.gene068643 | MS.gene29843 | PPI |
| MS.gene29843 | MS.gene01140 | PPI |
| MS.gene29843 | MS.gene002171 | PPI |
| MS.gene29843 | MS.gene025671 | PPI |
| MS.gene29843 | MS.gene70386 | PPI |
| MS.gene00195 | MS.gene29843 | PPI |
| MS.gene058203 | MS.gene29843 | PPI |
| MS.gene28801 | MS.gene29843 | PPI |
| MS.gene07274 | MS.gene29843 | PPI |
| MS.gene027856 | MS.gene29843 | PPI |
| MS.gene29843 | MS.gene069177 | PPI |
| MS.gene86920 | MS.gene29843 | PPI |
| MS.gene29843 | MS.gene71615 | PPI |
| MS.gene071952 | MS.gene29843 | PPI |
| MS.gene028420 | MS.gene29843 | PPI |
| MS.gene29843 | MS.gene96691 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29843.t1 | MTR_3g074060 | 96.525 | 777 | 26 | 1 | 1 | 777 | 1 | 776 | 0.0 | 1555 |
| MS.gene29843.t1 | MTR_5g062430 | 70.897 | 780 | 221 | 3 | 3 | 777 | 4 | 782 | 0.0 | 1167 |
| MS.gene29843.t1 | MTR_5g062370 | 70.128 | 780 | 227 | 3 | 3 | 777 | 4 | 782 | 0.0 | 1160 |
| MS.gene29843.t1 | MTR_5g062320 | 69.897 | 774 | 226 | 3 | 10 | 777 | 8 | 780 | 0.0 | 1154 |
| MS.gene29843.t1 | MTR_5g062650 | 69.565 | 782 | 231 | 3 | 3 | 777 | 4 | 785 | 0.0 | 1150 |
| MS.gene29843.t1 | MTR_5g062370 | 71.453 | 585 | 161 | 3 | 3 | 582 | 4 | 587 | 0.0 | 878 |
| MS.gene29843.t1 | MTR_5g030860 | 51.088 | 781 | 354 | 12 | 12 | 775 | 11 | 780 | 0.0 | 771 |
| MS.gene29843.t1 | MTR_1g087240 | 48.711 | 776 | 364 | 11 | 9 | 775 | 5 | 755 | 0.0 | 753 |
| MS.gene29843.t1 | MTR_2g034720 | 49.098 | 776 | 363 | 15 | 3 | 773 | 4 | 752 | 0.0 | 750 |
| MS.gene29843.t1 | MTR_7g109390 | 48.454 | 776 | 382 | 12 | 3 | 775 | 1 | 761 | 0.0 | 744 |
| MS.gene29843.t1 | MTR_1g106860 | 48.303 | 766 | 367 | 11 | 15 | 767 | 10 | 759 | 0.0 | 721 |
| MS.gene29843.t1 | MTR_2g008240 | 47.765 | 783 | 379 | 14 | 3 | 775 | 11 | 773 | 0.0 | 714 |
| MS.gene29843.t1 | MTR_4g094285 | 46.574 | 788 | 381 | 15 | 5 | 777 | 12 | 774 | 0.0 | 708 |
| MS.gene29843.t1 | MTR_6g028090 | 27.061 | 643 | 366 | 24 | 45 | 633 | 28 | 621 | 3.04e-43 | 166 |
| MS.gene29843.t1 | MTR_3g462820 | 27.520 | 625 | 317 | 23 | 45 | 590 | 22 | 589 | 8.28e-43 | 165 |
| MS.gene29843.t1 | MTR_2g030000 | 27.900 | 638 | 341 | 28 | 45 | 612 | 30 | 618 | 5.73e-42 | 163 |
| MS.gene29843.t1 | MTR_6g028120 | 26.415 | 636 | 353 | 24 | 41 | 608 | 5 | 593 | 4.97e-41 | 160 |
| MS.gene29843.t1 | MTR_6g028110 | 26.133 | 662 | 399 | 25 | 21 | 626 | 5 | 632 | 5.21e-41 | 160 |
| MS.gene29843.t1 | MTR_6g028110 | 25.735 | 680 | 400 | 25 | 21 | 644 | 5 | 635 | 6.04e-41 | 160 |
| MS.gene29843.t1 | MTR_3g079750 | 26.754 | 684 | 352 | 31 | 31 | 637 | 16 | 627 | 1.31e-40 | 159 |
| MS.gene29843.t1 | MTR_5g069800 | 26.710 | 614 | 337 | 24 | 47 | 592 | 7 | 575 | 7.61e-40 | 156 |
| MS.gene29843.t1 | MTR_6g028100 | 26.052 | 618 | 370 | 23 | 45 | 608 | 28 | 612 | 1.38e-39 | 155 |
| MS.gene29843.t1 | MTR_7g086030 | 25.457 | 656 | 360 | 24 | 45 | 633 | 4 | 597 | 1.45e-38 | 152 |
| MS.gene29843.t1 | MTR_7g086030 | 25.382 | 654 | 363 | 23 | 45 | 633 | 29 | 622 | 2.24e-38 | 152 |
| MS.gene29843.t1 | MTR_5g069740 | 26.437 | 609 | 337 | 21 | 45 | 592 | 5 | 563 | 2.09e-35 | 142 |
| MS.gene29843.t1 | MTR_7g086010 | 28.846 | 364 | 216 | 16 | 81 | 431 | 119 | 452 | 2.49e-26 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29843.t1 | AT1G78060 | 65.287 | 749 | 243 | 8 | 29 | 770 | 22 | 760 | 0.0 | 1014 |
| MS.gene29843.t1 | AT5G10560 | 49.746 | 788 | 367 | 8 | 12 | 775 | 8 | 790 | 0.0 | 776 |
| MS.gene29843.t1 | AT3G19620 | 49.153 | 767 | 368 | 13 | 9 | 767 | 6 | 758 | 0.0 | 749 |
| MS.gene29843.t1 | AT1G02640 | 48.898 | 771 | 374 | 9 | 7 | 775 | 6 | 758 | 0.0 | 741 |
| MS.gene29843.t1 | AT5G64570 | 49.744 | 780 | 370 | 13 | 5 | 775 | 16 | 782 | 0.0 | 734 |
| MS.gene29843.t1 | AT5G09730 | 49.103 | 780 | 373 | 15 | 7 | 777 | 9 | 773 | 0.0 | 727 |
| MS.gene29843.t1 | AT5G49360 | 48.254 | 773 | 373 | 13 | 10 | 773 | 14 | 768 | 0.0 | 714 |
| MS.gene29843.t1 | AT5G64570 | 52.226 | 584 | 269 | 8 | 5 | 585 | 16 | 592 | 0.0 | 601 |
| MS.gene29843.t1 | AT5G64570 | 49.451 | 637 | 303 | 11 | 145 | 775 | 1 | 624 | 0.0 | 599 |
| MS.gene29843.t1 | AT5G09700 | 45.325 | 492 | 251 | 8 | 294 | 777 | 45 | 526 | 2.77e-135 | 411 |
| MS.gene29843.t1 | AT3G47000 | 26.623 | 616 | 335 | 25 | 45 | 590 | 10 | 578 | 1.24e-40 | 159 |
| MS.gene29843.t1 | AT3G47040 | 26.560 | 625 | 371 | 26 | 39 | 608 | 4 | 595 | 2.16e-39 | 155 |
| MS.gene29843.t1 | AT3G47010 | 26.066 | 633 | 358 | 26 | 42 | 608 | 8 | 596 | 2.34e-39 | 155 |
| MS.gene29843.t1 | AT5G04885 | 25.380 | 658 | 375 | 25 | 22 | 612 | 9 | 617 | 2.49e-39 | 155 |
| MS.gene29843.t1 | AT5G04885 | 25.380 | 658 | 375 | 25 | 22 | 612 | 9 | 617 | 2.49e-39 | 155 |
| MS.gene29843.t1 | AT5G04885 | 25.380 | 658 | 375 | 25 | 22 | 612 | 26 | 634 | 3.14e-39 | 155 |
| MS.gene29843.t1 | AT3G47050 | 27.063 | 606 | 355 | 25 | 41 | 592 | 6 | 578 | 4.44e-38 | 151 |
| MS.gene29843.t1 | AT3G47010 | 25.750 | 633 | 359 | 26 | 42 | 608 | 8 | 595 | 1.04e-37 | 150 |
| MS.gene29843.t1 | AT5G20950 | 27.039 | 662 | 349 | 24 | 45 | 637 | 26 | 622 | 1.73e-36 | 146 |
| MS.gene29843.t1 | AT5G20950 | 27.039 | 662 | 349 | 24 | 45 | 637 | 26 | 622 | 1.73e-36 | 146 |
| MS.gene29843.t1 | AT5G20950 | 27.039 | 662 | 349 | 24 | 45 | 637 | 104 | 700 | 2.68e-36 | 146 |
| MS.gene29843.t1 | AT5G20940 | 28.475 | 446 | 229 | 16 | 45 | 431 | 32 | 446 | 1.39e-35 | 144 |
| MS.gene29843.t1 | AT3G47040 | 25.653 | 651 | 369 | 26 | 39 | 608 | 4 | 620 | 2.89e-35 | 142 |
| MS.gene29843.t1 | AT3G47000 | 29.047 | 451 | 221 | 19 | 45 | 431 | 10 | 425 | 6.11e-34 | 136 |
| MS.gene29843.t1 | AT3G62710 | 26.786 | 616 | 339 | 28 | 57 | 632 | 105 | 648 | 9.09e-34 | 138 |
| MS.gene29843.t1 | AT3G47040 | 28.054 | 442 | 249 | 19 | 39 | 431 | 4 | 425 | 3.82e-33 | 134 |
| MS.gene29843.t1 | AT3G47010 | 27.332 | 461 | 241 | 19 | 42 | 443 | 8 | 433 | 9.73e-32 | 129 |
| MS.gene29843.t1 | AT3G47050 | 27.200 | 375 | 218 | 13 | 39 | 371 | 4 | 365 | 2.55e-27 | 115 |
| MS.gene29843.t1 | AT3G47010 | 25.592 | 422 | 270 | 18 | 204 | 608 | 23 | 417 | 1.67e-23 | 104 |
| MS.gene29843.t1 | AT3G47000 | 25.822 | 426 | 265 | 18 | 189 | 590 | 3 | 401 | 5.90e-23 | 103 |
Find 202 sgRNAs with CRISPR-Local
Find 385 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCAAACATAAACATATTT+AGG | 0.139750 | 3.4:-72660923 | MS.gene29843:CDS |
| AAGCAATGGGGATGACATTT+TGG | 0.141480 | 3.4:-72660947 | MS.gene29843:CDS |
| GCTTCCCCTTTAACTCTTCT+AGG | 0.180542 | 3.4:-72658815 | MS.gene29843:CDS |
| TTCTAAGCGACCAGTTATTT+TGG | 0.210219 | 3.4:-72658525 | MS.gene29843:CDS |
| AACTGGTCGCTTAGAAGTTT+TGG | 0.215942 | 3.4:+72658532 | None:intergenic |
| GGAACTTTAATGTAATCTTT+TGG | 0.232449 | 3.4:+72657882 | None:intergenic |
| GTGAAGCAGTGTTCTTTAAA+AGG | 0.237863 | 3.4:+72658894 | None:intergenic |
| TGAAACTAATTTGTACCTTA+TGG | 0.259642 | 3.4:+72657659 | None:intergenic |
| TAGTTTCCTAGAAGAGTTAA+AGG | 0.263259 | 3.4:+72658809 | None:intergenic |
| GGAAGCTTTGGGTTGCAAAA+TGG | 0.269364 | 3.4:+72662587 | None:intergenic |
| TGTGCTTATAACCGTGTAAA+TGG | 0.271364 | 3.4:-72660418 | MS.gene29843:CDS |
| ATAAAATTGGAGGTATTATC+TGG | 0.280329 | 3.4:-72658454 | MS.gene29843:CDS |
| ATGCCAAATGGAAGCTTTGC+TGG | 0.286297 | 3.4:+72658989 | None:intergenic |
| ACATTTCACTGCCTATGATT+TGG | 0.297124 | 3.4:-72660751 | MS.gene29843:CDS |
| GGTCCTACGGTGTATGAATT+TGG | 0.304426 | 3.4:-72657789 | MS.gene29843:CDS |
| CTTTGAGTGATCGGAAGCTT+TGG | 0.307325 | 3.4:+72662575 | None:intergenic |
| TCCCTAAATATGTTTATGTT+TGG | 0.312006 | 3.4:+72660921 | None:intergenic |
| CAATTGTTTCATAGGACTTC+CGG | 0.316813 | 3.4:+72657515 | None:intergenic |
| AAGCTTCCATTTGGCATGAT+TGG | 0.317533 | 3.4:-72658983 | MS.gene29843:CDS |
| GATTATGTTGTTCTTGTTAT+GGG | 0.323709 | 3.4:-72658641 | MS.gene29843:CDS |
| TATGCTGTTTCCTATGTTAG+AGG | 0.328224 | 3.4:-72660840 | MS.gene29843:CDS |
| TGGAAATGAAATAGGCAATT+GGG | 0.344326 | 3.4:-72661001 | MS.gene29843:intron |
| AAACCTACCAATTGTTTCAT+AGG | 0.347298 | 3.4:+72657507 | None:intergenic |
| TCATTCGTCCACTCATTTGA+TGG | 0.350391 | 3.4:-72657697 | MS.gene29843:CDS |
| TTAGCTGAACTAATATCTAT+AGG | 0.354850 | 3.4:+72658485 | None:intergenic |
| AGATTATGTTGTTCTTGTTA+TGG | 0.355606 | 3.4:-72658642 | MS.gene29843:CDS |
| CTTCAAGGTGATTCCTTTCA+AGG | 0.358682 | 3.4:-72660816 | MS.gene29843:CDS |
| AAAGGGGAAGCATTGGCATT+AGG | 0.364823 | 3.4:+72658827 | None:intergenic |
| TTGCTGGATTTCCATCAAAT+AGG | 0.367114 | 3.4:+72659005 | None:intergenic |
| TACAAATTAGTTTCAGAGTT+AGG | 0.368724 | 3.4:-72657651 | MS.gene29843:CDS |
| GAGTCTTGAAACAAGGTCTT+TGG | 0.370001 | 3.4:+72662550 | None:intergenic |
| TTTGAGTGATCGGAAGCTTT+GGG | 0.373070 | 3.4:+72662576 | None:intergenic |
| CTAGCTTTGATTCTCACCTT+TGG | 0.378169 | 3.4:-72662346 | MS.gene29843:CDS |
| CATAGTTTGTTGTTAGATGC+AGG | 0.385042 | 3.4:-72657483 | MS.gene29843:CDS |
| TCCAAACATAAACATATTTA+GGG | 0.386351 | 3.4:-72660922 | MS.gene29843:CDS |
| ATCAAACAATGATATCTATC+AGG | 0.387643 | 3.4:+72657340 | None:intergenic |
| TAGAAGTGAAGGTGAGGAAA+AGG | 0.388577 | 3.4:+72662675 | None:intergenic |
| GTGGAAATGAAATAGGCAAT+TGG | 0.388742 | 3.4:-72661002 | MS.gene29843:intron |
| CTGCCTATGATTTGGACAAT+TGG | 0.391285 | 3.4:-72660743 | MS.gene29843:CDS |
| TCCTATGTTAGAGGACTTCA+AGG | 0.398233 | 3.4:-72660831 | MS.gene29843:CDS |
| AAATCTATTTCTATACTTCA+AGG | 0.399852 | 3.4:-72658770 | MS.gene29843:CDS |
| CTCATCCTCATGTCTGTCAT+TGG | 0.406217 | 3.4:+72657861 | None:intergenic |
| GATCCCGCAACCGGCTATCC+AGG | 0.411353 | 3.4:-72657834 | MS.gene29843:CDS |
| CTTCCAATTGTCCAAATCAT+AGG | 0.416710 | 3.4:+72660740 | None:intergenic |
| CAAAGGAGCACCAAAATAAC+TGG | 0.417499 | 3.4:+72658515 | None:intergenic |
| TGTTGTTCTTGTTATGGGAT+TGG | 0.419650 | 3.4:-72658636 | MS.gene29843:CDS |
| ATTTGTTAAGAGATTGAAAT+CGG | 0.423848 | 3.4:+72660381 | None:intergenic |
| TACAATGGAGGACAAGCAAT+GGG | 0.424197 | 3.4:-72660960 | MS.gene29843:CDS |
| CGTCCTGGATAGCCGGTTGC+GGG | 0.426160 | 3.4:+72657831 | None:intergenic |
| GAAGCTTTGGGTTGCAAAAT+GGG | 0.427105 | 3.4:+72662588 | None:intergenic |
| GGTCTCGTAAACAGCAATAT+AGG | 0.429355 | 3.4:+72657552 | None:intergenic |
| ATGAGCTCAAGTTGCTTGCC+TGG | 0.436975 | 3.4:+72658566 | None:intergenic |
| TGGTGGAGTGAAGCACTTCA+TGG | 0.437164 | 3.4:-72662452 | MS.gene29843:CDS |
| AGTGAAGCACTTCATGGAAT+TGG | 0.438899 | 3.4:-72662446 | MS.gene29843:CDS |
| AGTTTCCTAGAAGAGTTAAA+GGG | 0.439616 | 3.4:+72658810 | None:intergenic |
| GCACGGTCTATTCGAACTAT+AGG | 0.440133 | 3.4:+72659064 | None:intergenic |
| CTTAGTCGAGCGAACGAGGC+TGG | 0.444276 | 3.4:-72657417 | MS.gene29843:CDS |
| GCGCTTGCACAGATTATCTT+CGG | 0.444836 | 3.4:-72658401 | MS.gene29843:CDS |
| CCTTTCAAGGTGGTAAATTG+AGG | 0.447530 | 3.4:-72660803 | MS.gene29843:CDS |
| TGCAACAAGCAGAAGCTTGA+AGG | 0.451720 | 3.4:+72660775 | None:intergenic |
| CGGAAGTCCTATGAAACAAT+TGG | 0.454607 | 3.4:-72657514 | MS.gene29843:CDS |
| AATGGGTAGGATCTGGTTGA+TGG | 0.455801 | 3.4:+72662605 | None:intergenic |
| GTTGCTGATGTTCTTCATGC+TGG | 0.461257 | 3.4:-72660139 | MS.gene29843:intron |
| CGTGTTCATCTTGACTTGCC+AGG | 0.468378 | 3.4:-72658584 | MS.gene29843:CDS |
| CTGAAAATTCAGAAACCATA+AGG | 0.470959 | 3.4:-72657674 | MS.gene29843:CDS |
| ATCTTCGGTGACCACAATCC+AGG | 0.473820 | 3.4:-72658386 | MS.gene29843:intron |
| AGTATTTCCTTAGCAGTCAT+AGG | 0.475975 | 3.4:-72658851 | MS.gene29843:CDS |
| CTTCATGGAATTGGTAATGT+TGG | 0.476358 | 3.4:-72662437 | MS.gene29843:CDS |
| ATTCCTAGACTTGGTATCCC+TGG | 0.476443 | 3.4:-72662482 | MS.gene29843:CDS |
| TGTTGTTAGATGCAGGGGAA+AGG | 0.476995 | 3.4:-72657476 | MS.gene29843:CDS |
| GAGGAAGACTGCCAATTACT+TGG | 0.477124 | 3.4:-72657908 | MS.gene29843:CDS |
| TCGTCCTGGATAGCCGGTTG+CGG | 0.478908 | 3.4:+72657830 | None:intergenic |
| AATCCAGCAAAGCTTCCATT+TGG | 0.479595 | 3.4:-72658992 | MS.gene29843:CDS |
| TGCTCAATGCAACTACGAAA+TGG | 0.482034 | 3.4:+72660463 | None:intergenic |
| ATAAGGCTAGGCCTATTTGA+TGG | 0.482689 | 3.4:-72659016 | MS.gene29843:CDS |
| CTTTCAAGGTGGTAAATTGA+GGG | 0.483323 | 3.4:-72660802 | MS.gene29843:CDS |
| AAATACTGTTAGAAAACAAT+GGG | 0.484703 | 3.4:-72660362 | MS.gene29843:CDS |
| GCATAGTTAGAAGTCATCAT+AGG | 0.485327 | 3.4:+72660858 | None:intergenic |
| CGCAATGCCTCCGAGTTCAC+CGG | 0.485334 | 3.4:+72658421 | None:intergenic |
| GTGCTTATAACCGTGTAAAT+GGG | 0.486214 | 3.4:-72660417 | MS.gene29843:CDS |
| ACATATTTAGGGATCCAAGA+TGG | 0.488212 | 3.4:-72660911 | MS.gene29843:CDS |
| AGGGTTTCACCACTATGTTA+AGG | 0.490232 | 3.4:-72658750 | MS.gene29843:CDS |
| GCTCTTGAAGCTGCAAGAAA+CGG | 0.490942 | 3.4:-72658923 | MS.gene29843:CDS |
| CTGCTGTAGTAATAACTTGA+GGG | 0.493520 | 3.4:+72662369 | None:intergenic |
| CATATTTAGGGATCCAAGAT+GGG | 0.494587 | 3.4:-72660910 | MS.gene29843:CDS |
| ATTGGAGGTATTATCTGGGC+TGG | 0.495300 | 3.4:-72658449 | MS.gene29843:CDS |
| AATCTATTTCTATACTTCAA+GGG | 0.497613 | 3.4:-72658769 | MS.gene29843:CDS |
| ATGAGAGCTGATCCCGCAAC+CGG | 0.499710 | 3.4:-72657843 | MS.gene29843:CDS |
| CCTTGTTTCAAGACTCACAT+TGG | 0.500842 | 3.4:-72662543 | MS.gene29843:CDS |
| CCTCAATTTACCACCTTGAA+AGG | 0.503529 | 3.4:+72660803 | None:intergenic |
| TCACTCCACCACTGATAACC+AGG | 0.504074 | 3.4:+72662464 | None:intergenic |
| TGTCAGATTGTGGAGCTGTT+GGG | 0.508258 | 3.4:-72660207 | MS.gene29843:CDS |
| TTTCATCCTGGTTGTGATGG+TGG | 0.509672 | 3.4:-72658719 | MS.gene29843:CDS |
| GGACGTGGGATCTTCTTCAA+TGG | 0.511045 | 3.4:-72662416 | MS.gene29843:CDS |
| ATTATCTGGGCTGGTTATCC+CGG | 0.511568 | 3.4:-72658440 | MS.gene29843:CDS |
| TTTGAATAGTCACAAGCAAA+TGG | 0.511606 | 3.4:+72662629 | None:intergenic |
| GCTGGTTATCCCGGTGAACT+CGG | 0.513527 | 3.4:-72658431 | MS.gene29843:CDS |
| GTGTCAGATTGTGGAGCTGT+TGG | 0.514165 | 3.4:-72660208 | MS.gene29843:CDS |
| GTTGCAAAATGGGTAGGATC+TGG | 0.514278 | 3.4:+72662598 | None:intergenic |
| TTGGAACCAATCATGCCAAA+TGG | 0.515211 | 3.4:+72658977 | None:intergenic |
| GCTCCTCCCATTCCTAGACT+TGG | 0.519108 | 3.4:-72662491 | MS.gene29843:CDS |
| CCTTTGGTACCGAATCGGTC+AGG | 0.519532 | 3.4:-72662330 | MS.gene29843:intron |
| TCTCACCTTTGGTACCGAAT+CGG | 0.521384 | 3.4:-72662335 | MS.gene29843:CDS |
| AAAACCATGGGAACATTGTA+GGG | 0.523881 | 3.4:-72657581 | MS.gene29843:CDS |
| AGGTATATTGTGTCAGATTG+TGG | 0.526072 | 3.4:-72660217 | MS.gene29843:CDS |
| GCCTCCCTACAATGTTCCCA+TGG | 0.527917 | 3.4:+72657577 | None:intergenic |
| ATTTGAGCCGAAGCACACTT+TGG | 0.527987 | 3.4:+72658695 | None:intergenic |
| TAAAATCTGTAAGTTCGTCC+TGG | 0.528263 | 3.4:+72657816 | None:intergenic |
| GTATCCCTGGTTATCAGTGG+TGG | 0.534454 | 3.4:-72662469 | MS.gene29843:CDS |
| GTAAGTTCGTCCTGGATAGC+CGG | 0.534593 | 3.4:+72657824 | None:intergenic |
| AACAATATACCTGACCGATT+CGG | 0.535347 | 3.4:+72662321 | None:intergenic |
| AAGAGTTAAAGGGGAAGCAT+TGG | 0.535694 | 3.4:+72658820 | None:intergenic |
| AGGGATACCAAGTCTAGGAA+TGG | 0.537426 | 3.4:+72662484 | None:intergenic |
| TCTTTGGTTCTTTGAGTGAT+CGG | 0.539157 | 3.4:+72662566 | None:intergenic |
| AGATTGAAATCGGCACAACT+TGG | 0.540868 | 3.4:+72660391 | None:intergenic |
| AACTTGGAACCCCATTTACA+CGG | 0.544433 | 3.4:+72660407 | None:intergenic |
| CGCGAGCATCGAAGTGAAAG+CGG | 0.546150 | 3.4:+72660709 | None:intergenic |
| AGTATAGAAATAGATTTACA+AGG | 0.547314 | 3.4:+72658776 | None:intergenic |
| GGGATACCAAGTCTAGGAAT+GGG | 0.549981 | 3.4:+72662485 | None:intergenic |
| ATAGTTTGTTGTTAGATGCA+GGG | 0.550004 | 3.4:-72657482 | MS.gene29843:CDS |
| TGGTGGACCAAAGTGTGCTT+CGG | 0.550209 | 3.4:-72658702 | MS.gene29843:CDS |
| CAAATACTGTTAGAAAACAA+TGG | 0.551853 | 3.4:-72660363 | MS.gene29843:CDS |
| CTGAAATAGAAGTGAAGGTG+AGG | 0.552807 | 3.4:+72662669 | None:intergenic |
| GATGATGGTGACAAAGGTAA+AGG | 0.558419 | 3.4:+72662700 | None:intergenic |
| AGGGTCTCATTTGTTGCATG+TGG | 0.558547 | 3.4:-72657376 | MS.gene29843:CDS |
| ACTCTTCTAGGAAACTATGC+TGG | 0.560876 | 3.4:-72658803 | MS.gene29843:CDS |
| AGACCACTAAAACATCGAAC+CGG | 0.563354 | 3.4:-72657534 | MS.gene29843:CDS |
| ATTGGATCAAAGTGTAGAGA+GGG | 0.564885 | 3.4:-72658618 | MS.gene29843:CDS |
| TAGTTTGTTGTTAGATGCAG+GGG | 0.565163 | 3.4:-72657481 | MS.gene29843:CDS |
| AAGGAAGATGATGGTGACAA+AGG | 0.565981 | 3.4:+72662694 | None:intergenic |
| TAAAATTGGAGGTATTATCT+GGG | 0.566330 | 3.4:-72658453 | MS.gene29843:CDS |
| CTTTGGGTTGCAAAATGGGT+AGG | 0.566909 | 3.4:+72662592 | None:intergenic |
| GGTTTGAAGATCATAGAAGA+AGG | 0.567462 | 3.4:-72657396 | MS.gene29843:CDS |
| ATGGGTAGGATCTGGTTGAT+GGG | 0.568615 | 3.4:+72662606 | None:intergenic |
| GCAGGGGAAAGGAGACATGT+TGG | 0.569438 | 3.4:-72657465 | MS.gene29843:CDS |
| ACCTTGAAGTCCTCTAACAT+AGG | 0.569504 | 3.4:+72660830 | None:intergenic |
| AATTGAAAATAGATTGTGAA+GGG | 0.571295 | 3.4:+72659042 | None:intergenic |
| CTATGATTTGGACAATTGGA+AGG | 0.571540 | 3.4:-72660739 | MS.gene29843:CDS |
| GCTGCTGTAGTAATAACTTG+AGG | 0.574575 | 3.4:+72662368 | None:intergenic |
| CCAATGTGAGTCTTGAAACA+AGG | 0.575001 | 3.4:+72662543 | None:intergenic |
| TTTCGTAGTTGCATTGAGCA+AGG | 0.577135 | 3.4:-72660460 | MS.gene29843:CDS |
| ATACAATGGAGGACAAGCAA+TGG | 0.578829 | 3.4:-72660961 | MS.gene29843:CDS |
| AAAGGTAAAGGTTGATGAGA+GGG | 0.579378 | 3.4:+72662712 | None:intergenic |
| GAAAACAATGGGAATTCCAC+GGG | 0.579779 | 3.4:-72660351 | MS.gene29843:intron |
| ACATCTTAGTCGAGCGAACG+AGG | 0.581381 | 3.4:-72657421 | MS.gene29843:CDS |
| AAGGACTGAAATAGAAGTGA+AGG | 0.583217 | 3.4:+72662664 | None:intergenic |
| TAGAAATAGATTTACAAGGA+GGG | 0.590318 | 3.4:+72658780 | None:intergenic |
| GCAATGCCTCCGAGTTCACC+GGG | 0.590372 | 3.4:+72658422 | None:intergenic |
| ATTAGGACCTATGACTGCTA+AGG | 0.590903 | 3.4:+72658844 | None:intergenic |
| GTTTCCTAGAAGAGTTAAAG+GGG | 0.591308 | 3.4:+72658811 | None:intergenic |
| AAACAGCGTCCTTAACATAG+TGG | 0.592457 | 3.4:+72658741 | None:intergenic |
| AAGAAACTTCACCTGGATTG+TGG | 0.594801 | 3.4:+72658375 | None:intergenic |
| AGAAAACAATGGGAATTCCA+CGG | 0.595910 | 3.4:-72660352 | MS.gene29843:CDS |
| ACGGTGTATGAATTTGGCCA+TGG | 0.600902 | 3.4:-72657783 | MS.gene29843:CDS |
| GGGAGAGGACAAGAAACAGC+TGG | 0.605215 | 3.4:-72660888 | MS.gene29843:CDS |
| ATGAAGTTTGTCGTGTGTAA+CGG | 0.610203 | 3.4:+72657725 | None:intergenic |
| TTGGTATCCCTGGTTATCAG+TGG | 0.611691 | 3.4:-72662472 | MS.gene29843:CDS |
| CAAATGGTGGTAGCTGAGCA+AGG | 0.613513 | 3.4:+72662645 | None:intergenic |
| GGAATTGGTAATGTTGGACG+TGG | 0.614428 | 3.4:-72662431 | MS.gene29843:CDS |
| TAACCAGGGATACCAAGTCT+AGG | 0.616722 | 3.4:+72662479 | None:intergenic |
| TTTCAAGGTGGTAAATTGAG+GGG | 0.618147 | 3.4:-72660801 | MS.gene29843:CDS |
| AGTCCTATGAAACAATTGGT+AGG | 0.618848 | 3.4:-72657510 | MS.gene29843:CDS |
| GATTGGATCAAAGTGTAGAG+AGG | 0.621514 | 3.4:-72658619 | MS.gene29843:CDS |
| ATATTTAGGGATCCAAGATG+GGG | 0.624537 | 3.4:-72660909 | MS.gene29843:CDS |
| AAAATAGATTGTGAAGGGCA+CGG | 0.626411 | 3.4:+72659047 | None:intergenic |
| TTGAGGGAAGCTAGTTGCAG+AGG | 0.628505 | 3.4:+72662385 | None:intergenic |
| ATGTCGGTCTCAGTCACAGT+TGG | 0.630385 | 3.4:-72657609 | MS.gene29843:CDS |
| TTTGGTCCACCATCACAACC+AGG | 0.632794 | 3.4:+72658713 | None:intergenic |
| CCTGACCGATTCGGTACCAA+AGG | 0.633028 | 3.4:+72662330 | None:intergenic |
| GGATCATACATGATGAGCAA+GGG | 0.637641 | 3.4:-72660186 | MS.gene29843:CDS |
| GTTTGAAGATCATAGAAGAA+GGG | 0.639357 | 3.4:-72657395 | MS.gene29843:CDS |
| ATTGAGCAAGGACGAGCTAG+TGG | 0.641480 | 3.4:-72660448 | MS.gene29843:CDS |
| GGGATCATACATGATGAGCA+AGG | 0.642469 | 3.4:-72660187 | MS.gene29843:CDS |
| GGAAATGAAATAGGCAATTG+GGG | 0.645119 | 3.4:-72661000 | MS.gene29843:intron |
| GGTGAGGAAAAGGAAGATGA+TGG | 0.646963 | 3.4:+72662685 | None:intergenic |
| TGCTTATAACCGTGTAAATG+GGG | 0.648687 | 3.4:-72660416 | MS.gene29843:CDS |
| GGGTCTCATTTGTTGCATGT+GGG | 0.649952 | 3.4:-72657375 | MS.gene29843:CDS |
| CAAGGTGATTCCTTTCAAGG+TGG | 0.650018 | 3.4:-72660813 | MS.gene29843:CDS |
| GCAGGGATGGATCTAGAATG+TGG | 0.651822 | 3.4:-72659136 | MS.gene29843:intron |
| ATAGAAATAGATTTACAAGG+AGG | 0.657022 | 3.4:+72658779 | None:intergenic |
| GAATAGTCACAAGCAAATGG+TGG | 0.657076 | 3.4:+72662632 | None:intergenic |
| TAATTGAAAATAGATTGTGA+AGG | 0.658304 | 3.4:+72659041 | None:intergenic |
| CAAAGGTAAAGGTTGATGAG+AGG | 0.662391 | 3.4:+72662711 | None:intergenic |
| ATACCAAGTCTAGGAATGGG+AGG | 0.662802 | 3.4:+72662488 | None:intergenic |
| TATCTATAGGACCTCCACAA+AGG | 0.668985 | 3.4:+72658498 | None:intergenic |
| TGGCCAAATTCATACACCGT+AGG | 0.671014 | 3.4:+72657786 | None:intergenic |
| GCGAGAGCAATATACAATGG+AGG | 0.674380 | 3.4:-72660972 | MS.gene29843:CDS |
| AGGGTATGCAAAATCAGCAG+AGG | 0.675215 | 3.4:-72660167 | MS.gene29843:CDS |
| GAAGCGAGAGCAATATACAA+TGG | 0.675980 | 3.4:-72660975 | MS.gene29843:CDS |
| AAGTTCCAATGACAGACATG+AGG | 0.676512 | 3.4:-72657866 | MS.gene29843:CDS |
| CACTCCACCACTGATAACCA+GGG | 0.677155 | 3.4:+72662465 | None:intergenic |
| GCTCGACTAAGATGTTCACA+AGG | 0.677345 | 3.4:+72657429 | None:intergenic |
| ACCATGGGAACATTGTAGGG+AGG | 0.683771 | 3.4:-72657578 | MS.gene29843:CDS |
| TGTAACGGAAACAAACTCGT+AGG | 0.683975 | 3.4:+72657740 | None:intergenic |
| AGAAACCTGCAAAAGCATGT+CGG | 0.689737 | 3.4:-72657625 | MS.gene29843:CDS |
| TATGATTTGGACAATTGGAA+GGG | 0.691461 | 3.4:-72660738 | MS.gene29843:CDS |
| GGTTATCCCGGTGAACTCGG+AGG | 0.700448 | 3.4:-72658428 | MS.gene29843:CDS |
| TATTTAGGGATCCAAGATGG+GGG | 0.707233 | 3.4:-72660908 | MS.gene29843:CDS |
| TGCTTCGGCTCAAATAGACG+AGG | 0.719505 | 3.4:-72658687 | MS.gene29843:CDS |
| ACAATGGAGGACAAGCAATG+GGG | 0.736483 | 3.4:-72660959 | MS.gene29843:CDS |
| TCAATGCAACTACGAAATGG+TGG | 0.737851 | 3.4:+72660466 | None:intergenic |
| GAATTGGTAATGTTGGACGT+GGG | 0.776859 | 3.4:-72662430 | MS.gene29843:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAACTATACAATTAAATCT+TGG | - | chr3.4:72660021-72660040 | MS.gene29843:intron | 15.0% |
| !! | ATAATAACAATGTAAAAAGA+GGG | + | chr3.4:72659965-72659984 | None:intergenic | 15.0% |
| !! | CTTAAGATATAATGAATTTA+CGG | + | chr3.4:72662056-72662075 | None:intergenic | 15.0% |
| !!! | ACTATTTTAATAACTTAACA+TGG | + | chr3.4:72660627-72660646 | None:intergenic | 15.0% |
| !!! | ATAATTTTCCTTTACTTTTA+TGG | - | chr3.4:72660341-72660360 | MS.gene29843:intron | 15.0% |
| !!! | ATCTATTTTCAATTAGAATA+AGG | - | chr3.4:72661024-72661043 | MS.gene29843:intron | 15.0% |
| !!! | TACCTTTTAACTTATTTTTA+CGG | - | chr3.4:72657902-72657921 | MS.gene29843:CDS | 15.0% |
| !!! | TGATATAGTATAATTCTTTT+TGG | - | chr3.4:72660267-72660286 | MS.gene29843:intron | 15.0% |
| !! | AAAAACAGAATTGAATGAAA+TGG | + | chr3.4:72660242-72660261 | None:intergenic | 20.0% |
| !! | AAATACTGTTAGAAAACAAT+GGG | - | chr3.4:72659695-72659714 | MS.gene29843:intron | 20.0% |
| !! | AAGAATAATAAATACAGTTG+AGG | + | chr3.4:72660526-72660545 | None:intergenic | 20.0% |
| !! | AATCATAGAGGAAAAAATAT+AGG | + | chr3.4:72658237-72658256 | None:intergenic | 20.0% |
| !! | AATTGAAAATAGATTGTGAA+GGG | + | chr3.4:72661018-72661037 | None:intergenic | 20.0% |
| !! | ACTGGAATATGAAAAAAATT+TGG | - | chr3.4:72658104-72658123 | MS.gene29843:intron | 20.0% |
| !! | AGAATAATAAATACAGTTGA+GGG | + | chr3.4:72660525-72660544 | None:intergenic | 20.0% |
| !! | AGATTAGATAACATTCAATT+TGG | - | chr3.4:72661744-72661763 | MS.gene29843:intron | 20.0% |
| !! | AGTATAGAAATAGATTTACA+AGG | + | chr3.4:72661284-72661303 | None:intergenic | 20.0% |
| !! | ATAGAAAACCATAAAAGTAA+AGG | + | chr3.4:72660352-72660371 | None:intergenic | 20.0% |
| !! | ATCATAGAGGAAAAAATATA+GGG | + | chr3.4:72658236-72658255 | None:intergenic | 20.0% |
| !! | ATTTAGCTGTTTATCTAAAT+AGG | - | chr3.4:72658637-72658656 | MS.gene29843:CDS | 20.0% |
| !! | GATAATAACAATGTAAAAAG+AGG | + | chr3.4:72659966-72659985 | None:intergenic | 20.0% |
| !! | TAATTGAAAATAGATTGTGA+AGG | + | chr3.4:72661019-72661038 | None:intergenic | 20.0% |
| !! | TCATCAAAATATAAACTCTT+TGG | - | chr3.4:72660409-72660428 | MS.gene29843:CDS | 20.0% |
| !! | TCCAAACATAAACATATTTA+GGG | - | chr3.4:72659135-72659154 | MS.gene29843:CDS | 20.0% |
| !! | TGAACTATTAAACAAACATA+AGG | - | chr3.4:72661721-72661740 | MS.gene29843:intron | 20.0% |
| !! | TTTAGCTGTTTATCTAAATA+GGG | - | chr3.4:72658638-72658657 | MS.gene29843:CDS | 20.0% |
| !!! | AAATCTATTTCTATACTTCA+AGG | - | chr3.4:72661287-72661306 | MS.gene29843:intron | 20.0% |
| !!! | AATCTATTTCTATACTTCAA+GGG | - | chr3.4:72661288-72661307 | MS.gene29843:intron | 20.0% |
| !!! | AGCTAGATATAAATGATTTT+CGG | + | chr3.4:72661117-72661136 | None:intergenic | 20.0% |
| !!! | ATAAAAATTTTGCAATGCAA+AGG | + | chr3.4:72658815-72658834 | None:intergenic | 20.0% |
| !!! | ATATAGCTTAACTATGTTTT+TGG | + | chr3.4:72658588-72658607 | None:intergenic | 20.0% |
| !!! | ATATTTTTTCCTCTATGATT+TGG | - | chr3.4:72658237-72658256 | MS.gene29843:intron | 20.0% |
| !!! | ATTATGATTTTCTTGACTAT+AGG | - | chr3.4:72660837-72660856 | MS.gene29843:CDS | 20.0% |
| !!! | ATTTGTTAAGAGATTGAAAT+CGG | + | chr3.4:72659679-72659698 | None:intergenic | 20.0% |
| !!! | GAACTTTAATGTAATCTTTT+GGG | + | chr3.4:72662177-72662196 | None:intergenic | 20.0% |
| !!! | GAAGTTACTTTTCATTTTTT+TGG | - | chr3.4:72659006-72659025 | MS.gene29843:CDS | 20.0% |
| !!! | TAATTAAGTGTAACATTTTG+TGG | - | chr3.4:72659806-72659825 | MS.gene29843:intron | 20.0% |
| !!! | TAATTGTTTTTGAATGAATG+TGG | - | chr3.4:72659036-72659055 | MS.gene29843:CDS | 20.0% |
| !!! | TATAAGAATGACCAATTTTA+TGG | + | chr3.4:72658066-72658085 | None:intergenic | 20.0% |
| !!! | TCTATCTAGCTATAATATTT+TGG | - | chr3.4:72660664-72660683 | MS.gene29843:intron | 20.0% |
| !!! | TTACTTTTCATTTTTTTGGT+TGG | - | chr3.4:72659010-72659029 | MS.gene29843:CDS | 20.0% |
| ! | AAAAATGACGATAAAATTGG+AGG | - | chr3.4:72661593-72661612 | MS.gene29843:intron | 25.0% |
| ! | AATGAATGTGGAAATGAAAT+AGG | - | chr3.4:72659048-72659067 | MS.gene29843:CDS | 25.0% |
| ! | AGAGTTATTGATACAATGAT+AGG | - | chr3.4:72657978-72657997 | MS.gene29843:intron | 25.0% |
| ! | AGATTATGTTGTTCTTGTTA+TGG | - | chr3.4:72661415-72661434 | MS.gene29843:intron | 25.0% |
| ! | ATAGAAATAGATTTACAAGG+AGG | + | chr3.4:72661281-72661300 | None:intergenic | 25.0% |
| ! | ATGCTCAATATAAAGATGAA+TGG | + | chr3.4:72658304-72658323 | None:intergenic | 25.0% |
| ! | ATTCATCTTTATATTGAGCA+TGG | - | chr3.4:72658303-72658322 | MS.gene29843:intron | 25.0% |
| ! | ATTTGGAAAAAATTGAGAGA+AGG | - | chr3.4:72658510-72658529 | MS.gene29843:CDS | 25.0% |
| ! | CAAATACTGTTAGAAAACAA+TGG | - | chr3.4:72659694-72659713 | MS.gene29843:intron | 25.0% |
| ! | CATAAAATTTGTGCCAAATT+GGG | + | chr3.4:72658274-72658293 | None:intergenic | 25.0% |
| ! | CTCCAAACATAAACATATTT+AGG | - | chr3.4:72659134-72659153 | MS.gene29843:CDS | 25.0% |
| ! | CTTTAAACTCGCATATAATT+TGG | + | chr3.4:72661887-72661906 | None:intergenic | 25.0% |
| ! | GAAAAGTAACTTCACTATTT+AGG | + | chr3.4:72658999-72659018 | None:intergenic | 25.0% |
| ! | GACCGTAAAAATAAGTTAAA+AGG | + | chr3.4:72657907-72657926 | None:intergenic | 25.0% |
| ! | GCTAAAAATGACGATAAAAT+TGG | - | chr3.4:72661590-72661609 | MS.gene29843:intron | 25.0% |
| ! | GTGAAATGCAAATTTGAAAA+AGG | + | chr3.4:72660298-72660317 | None:intergenic | 25.0% |
| ! | TAGAAAGTAACATAGACAAA+TGG | + | chr3.4:72660454-72660473 | None:intergenic | 25.0% |
| ! | TAGAAATAGATTTACAAGGA+GGG | + | chr3.4:72661280-72661299 | None:intergenic | 25.0% |
| ! | TATTAATAGTTGTCTACAGA+AGG | - | chr3.4:72661797-72661816 | MS.gene29843:intron | 25.0% |
| ! | TCATAGAGGAAAAAATATAG+GGG | + | chr3.4:72658235-72658254 | None:intergenic | 25.0% |
| ! | TCCCTAAATATGTTTATGTT+TGG | + | chr3.4:72659139-72659158 | None:intergenic | 25.0% |
| ! | TTAGCTGAACTAATATCTAT+AGG | + | chr3.4:72661575-72661594 | None:intergenic | 25.0% |
| ! | TTCATGCTGGTATATATTTA+GGG | - | chr3.4:72659931-72659950 | MS.gene29843:intron | 25.0% |
| !! | AAAAATTTGAAACCCTGATT+AGG | - | chr3.4:72658363-72658382 | MS.gene29843:intron | 25.0% |
| !! | AAAATTTGAAACCCTGATTA+GGG | - | chr3.4:72658364-72658383 | MS.gene29843:intron | 25.0% |
| !! | AATAGCAAAATATGCGTTTT+AGG | + | chr3.4:72658186-72658205 | None:intergenic | 25.0% |
| !! | ACATGTTGTAGAGATATTTT+AGG | - | chr3.4:72661965-72661984 | MS.gene29843:intron | 25.0% |
| !! | ACCATTTTGCAGAAAATATA+AGG | - | chr3.4:72658971-72658990 | MS.gene29843:CDS | 25.0% |
| !! | ATTTTGTGGTGAATAAAATC+AGG | - | chr3.4:72659820-72659839 | MS.gene29843:intron | 25.0% |
| !! | CACAAATTTGTTCTCATTAT+TGG | + | chr3.4:72658014-72658033 | None:intergenic | 25.0% |
| !! | CATATTCCAGTAAACTATTT+TGG | + | chr3.4:72658095-72658114 | None:intergenic | 25.0% |
| !! | GATTATGTTGTTCTTGTTAT+GGG | - | chr3.4:72661416-72661435 | MS.gene29843:intron | 25.0% |
| !! | GGAACTTTAATGTAATCTTT+TGG | + | chr3.4:72662178-72662197 | None:intergenic | 25.0% |
| !! | TAATCAGGGTTTCAAATTTT+TGG | + | chr3.4:72658364-72658383 | None:intergenic | 25.0% |
| !! | TACAAATTAGTTTCAGAGTT+AGG | - | chr3.4:72662406-72662425 | MS.gene29843:CDS | 25.0% |
| !! | TGAAACTAATTTGTACCTTA+TGG | + | chr3.4:72662401-72662420 | None:intergenic | 25.0% |
| !! | TTTTCAATTAGAATAAGGCT+AGG | - | chr3.4:72661029-72661048 | MS.gene29843:intron | 25.0% |
| !!! | AACAAAAAAGCATTGTAACT+AGG | + | chr3.4:72659390-72659409 | None:intergenic | 25.0% |
| !!! | AGCGGTTATGAATTTTTTTA+AGG | + | chr3.4:72657810-72657829 | None:intergenic | 25.0% |
| !!! | ATAAAATTGGAGGTATTATC+TGG | - | chr3.4:72661603-72661622 | MS.gene29843:intron | 25.0% |
| !!! | GGTTATGAATTTTTTTAAGG+CGG | + | chr3.4:72657807-72657826 | None:intergenic | 25.0% |
| !!! | TAAAATTGGAGGTATTATCT+GGG | - | chr3.4:72661604-72661623 | MS.gene29843:intron | 25.0% |
| !!! | TAGATATATGGCTTTGAATA+AGG | - | chr3.4:72660166-72660185 | MS.gene29843:CDS | 25.0% |
| !!! | TTTTAGGAGTAATATAACAG+TGG | - | chr3.4:72661981-72662000 | MS.gene29843:intron | 25.0% |
| AAACCTACCAATTGTTTCAT+AGG | + | chr3.4:72662553-72662572 | None:intergenic | 30.0% | |
| AATGAACTCACAAAGTGTAA+AGG | - | chr3.4:72660054-72660073 | MS.gene29843:intron | 30.0% | |
| AATGAGAACAAATTTGTGCA+TGG | - | chr3.4:72658016-72658035 | MS.gene29843:intron | 30.0% | |
| AGCTATCCAAAATAGTTTAC+TGG | - | chr3.4:72658086-72658105 | MS.gene29843:intron | 30.0% | |
| AGTTTCCTAGAAGAGTTAAA+GGG | + | chr3.4:72661250-72661269 | None:intergenic | 30.0% | |
| ATGGTGTAATTATTTCCCTT+TGG | + | chr3.4:72660608-72660627 | None:intergenic | 30.0% | |
| ATTATACAAGAAACTTCACC+TGG | + | chr3.4:72661692-72661711 | None:intergenic | 30.0% | |
| ATTTACGGACCATGTATTAA+CGG | + | chr3.4:72662041-72662060 | None:intergenic | 30.0% | |
| ATTTATGTAGACAAGTCCAA+AGG | - | chr3.4:72660589-72660608 | MS.gene29843:intron | 30.0% | |
| CAGTCATAGATGAATATGTT+AGG | + | chr3.4:72660481-72660500 | None:intergenic | 30.0% | |
| CATAGAGGAAAAAATATAGG+GGG | + | chr3.4:72658234-72658253 | None:intergenic | 30.0% | |
| CATTCATGACTAAAATTGAG+TGG | + | chr3.4:72662121-72662140 | None:intergenic | 30.0% | |
| CTGAAAATTCAGAAACCATA+AGG | - | chr3.4:72662383-72662402 | MS.gene29843:CDS | 30.0% | |
| CTTCATGCTGGTATATATTT+AGG | - | chr3.4:72659930-72659949 | MS.gene29843:intron | 30.0% | |
| GCATAAAATTTGTGCCAAAT+TGG | + | chr3.4:72658275-72658294 | None:intergenic | 30.0% | |
| GTAAATAGCTTTCTATACGA+GGG | + | chr3.4:72660569-72660588 | None:intergenic | 30.0% | |
| GTATCAATAACTCTTACAGT+TGG | + | chr3.4:72657972-72657991 | None:intergenic | 30.0% | |
| GTTTGAAGATCATAGAAGAA+GGG | - | chr3.4:72662662-72662681 | MS.gene29843:CDS | 30.0% | |
| TAACAATGTAAAAAGAGGGT+TGG | + | chr3.4:72659961-72659980 | None:intergenic | 30.0% | |
| TAGTTTCCTAGAAGAGTTAA+AGG | + | chr3.4:72661251-72661270 | None:intergenic | 30.0% | |
| TATCTTGTTGAAGCAATGAA+TGG | - | chr3.4:72659773-72659792 | MS.gene29843:intron | 30.0% | |
| TGGAAATGAAATAGGCAATT+GGG | - | chr3.4:72659056-72659075 | MS.gene29843:CDS | 30.0% | |
| TGTAAATAGCTTTCTATACG+AGG | + | chr3.4:72660570-72660589 | None:intergenic | 30.0% | |
| TGTATGTTGCAGGAAAAAAT+TGG | + | chr3.4:72661948-72661967 | None:intergenic | 30.0% | |
| TGTCATCTCAACGTAAAATT+TGG | - | chr3.4:72658493-72658512 | MS.gene29843:CDS | 30.0% | |
| TTCAGTAAAAGTTTCTCACT+CGG | + | chr3.4:72659514-72659533 | None:intergenic | 30.0% | |
| TTGTAGAGAATCAAAGTTCA+GGG | - | chr3.4:72658703-72658722 | MS.gene29843:CDS | 30.0% | |
| TTGTTCACTCGTAGAATTTA+AGG | - | chr3.4:72657754-72657773 | MS.gene29843:CDS | 30.0% | |
| TTTATGTAGACAAGTCCAAA+GGG | - | chr3.4:72660590-72660609 | MS.gene29843:intron | 30.0% | |
| TTTGAATAGTCACAAGCAAA+TGG | + | chr3.4:72657431-72657450 | None:intergenic | 30.0% | |
| ! | AAGAATGACCAATTTTATGG+TGG | + | chr3.4:72658063-72658082 | None:intergenic | 30.0% |
| ! | ACGAACTTACAGATTTTACA+AGG | - | chr3.4:72662246-72662265 | MS.gene29843:intron | 30.0% |
| ! | AGTTTTCTACCGTTAATACA+TGG | - | chr3.4:72662029-72662048 | MS.gene29843:intron | 30.0% |
| ! | CATTTTCTCTCTCAATCTAA+TGG | + | chr3.4:72658857-72658876 | None:intergenic | 30.0% |
| ! | CGAACTTACAGATTTTACAA+GGG | - | chr3.4:72662247-72662266 | MS.gene29843:intron | 30.0% |
| ! | CTGCAAAAAGTACATATGTT+TGG | + | chr3.4:72659467-72659486 | None:intergenic | 30.0% |
| ! | GCATGTCAAAAATTCTAAAG+CGG | + | chr3.4:72657828-72657847 | None:intergenic | 30.0% |
| ! | GCCTTATATTTTCTGCAAAA+TGG | + | chr3.4:72658975-72658994 | None:intergenic | 30.0% |
| ! | TATGATTTGGACAATTGGAA+GGG | - | chr3.4:72659319-72659338 | MS.gene29843:intron | 30.0% |
| !! | AATGTGCTTTGAAAATTTGC+AGG | - | chr3.4:72660903-72660922 | MS.gene29843:CDS | 30.0% |
| !! | ATAGTTTGTTGTTAGATGCA+GGG | - | chr3.4:72662575-72662594 | MS.gene29843:CDS | 30.0% |
| !! | ATGTGCTTTGAAAATTTGCA+GGG | - | chr3.4:72660904-72660923 | MS.gene29843:CDS | 30.0% |
| !!! | CTTTTGTCGGTTTAGATATA+TGG | - | chr3.4:72660154-72660173 | MS.gene29843:CDS | 30.0% |
| !!! | GAAATACTAGTTTTTGGAAG+TGG | + | chr3.4:72661194-72661213 | None:intergenic | 30.0% |
| !!! | GCTAAGGAAATACTAGTTTT+TGG | + | chr3.4:72661200-72661219 | None:intergenic | 30.0% |
| !!! | TATGGCTTTGAATAAGGTTT+TGG | - | chr3.4:72660172-72660191 | MS.gene29843:CDS | 30.0% |
| AAAAACCATGGGAACATTGT+AGG | - | chr3.4:72662475-72662494 | MS.gene29843:CDS | 35.0% | |
| AAAACCATGGGAACATTGTA+GGG | - | chr3.4:72662476-72662495 | MS.gene29843:CDS | 35.0% | |
| AAAATAGATTGTGAAGGGCA+CGG | + | chr3.4:72661013-72661032 | None:intergenic | 35.0% | |
| AAAATTTGTGCCAAATTGGG+AGG | + | chr3.4:72658271-72658290 | None:intergenic | 35.0% | |
| AAATTTGTGCCAAATTGGGA+GGG | + | chr3.4:72658270-72658289 | None:intergenic | 35.0% | |
| AACAATATACCTGACCGATT+CGG | + | chr3.4:72657739-72657758 | None:intergenic | 35.0% | |
| AAGGACTGAAATAGAAGTGA+AGG | + | chr3.4:72657396-72657415 | None:intergenic | 35.0% | |
| AATCAGTAATTATTCACCCG+TGG | + | chr3.4:72659725-72659744 | None:intergenic | 35.0% | |
| ACAGTTGGAGTAAAAAACCA+TGG | - | chr3.4:72662463-72662482 | MS.gene29843:CDS | 35.0% | |
| ACATATTTAGGGATCCAAGA+TGG | - | chr3.4:72659146-72659165 | MS.gene29843:intron | 35.0% | |
| ACATTTCACTGCCTATGATT+TGG | - | chr3.4:72659306-72659325 | MS.gene29843:intron | 35.0% | |
| ACCTGAAGAATCATATGTCA+CGG | + | chr3.4:72659540-72659559 | None:intergenic | 35.0% | |
| AGAAAACAATGGGAATTCCA+CGG | - | chr3.4:72659705-72659724 | MS.gene29843:intron | 35.0% | |
| AGGTATATTGTGTCAGATTG+TGG | - | chr3.4:72659840-72659859 | MS.gene29843:intron | 35.0% | |
| AGTATTTCCTTAGCAGTCAT+AGG | - | chr3.4:72661206-72661225 | MS.gene29843:intron | 35.0% | |
| AGTCCTATGAAACAATTGGT+AGG | - | chr3.4:72662547-72662566 | MS.gene29843:CDS | 35.0% | |
| AGTGAATGAAATCCCTAATC+AGG | + | chr3.4:72658379-72658398 | None:intergenic | 35.0% | |
| ATACCATGGTGAAATCTAAC+TGG | - | chr3.4:72660782-72660801 | MS.gene29843:CDS | 35.0% | |
| ATATTTAGGGATCCAAGATG+GGG | - | chr3.4:72659148-72659167 | MS.gene29843:intron | 35.0% | |
| ATGAAGTTTGTCGTGTGTAA+CGG | + | chr3.4:72662335-72662354 | None:intergenic | 35.0% | |
| ATTGGATCAAAGTGTAGAGA+GGG | - | chr3.4:72661439-72661458 | MS.gene29843:intron | 35.0% | |
| CAATTGTTTCATAGGACTTC+CGG | + | chr3.4:72662545-72662564 | None:intergenic | 35.0% | |
| CAGAGTCGTTAATCTACTAA+CGG | + | chr3.4:72658885-72658904 | None:intergenic | 35.0% | |
| CAGTTGGAGTAAAAAACCAT+GGG | - | chr3.4:72662464-72662483 | MS.gene29843:CDS | 35.0% | |
| CATATTTAGGGATCCAAGAT+GGG | - | chr3.4:72659147-72659166 | MS.gene29843:intron | 35.0% | |
| CTGCTGTAGTAATAACTTGA+GGG | + | chr3.4:72657691-72657710 | None:intergenic | 35.0% | |
| CTTCCAATTGTCCAAATCAT+AGG | + | chr3.4:72659320-72659339 | None:intergenic | 35.0% | |
| CTTTCAAGGTGGTAAATTGA+GGG | - | chr3.4:72659255-72659274 | MS.gene29843:intron | 35.0% | |
| GCATAGTTAGAAGTCATCAT+AGG | + | chr3.4:72659202-72659221 | None:intergenic | 35.0% | |
| GGAAATGAAATAGGCAATTG+GGG | - | chr3.4:72659057-72659076 | MS.gene29843:CDS | 35.0% | |
| GGTTTGAAGATCATAGAAGA+AGG | - | chr3.4:72662661-72662680 | MS.gene29843:CDS | 35.0% | |
| GTGAAGCAGTGTTCTTTAAA+AGG | + | chr3.4:72661166-72661185 | None:intergenic | 35.0% | |
| GTGAATGAAATCCCTAATCA+GGG | + | chr3.4:72658378-72658397 | None:intergenic | 35.0% | |
| GTGCTTATAACCGTGTAAAT+GGG | - | chr3.4:72659640-72659659 | MS.gene29843:intron | 35.0% | |
| GTGGAAATGAAATAGGCAAT+TGG | - | chr3.4:72659055-72659074 | MS.gene29843:CDS | 35.0% | |
| GTTGTAGAGAATCAAAGTTC+AGG | - | chr3.4:72658702-72658721 | MS.gene29843:CDS | 35.0% | |
| GTTTCCTAGAAGAGTTAAAG+GGG | + | chr3.4:72661249-72661268 | None:intergenic | 35.0% | |
| TAAAATCTGTAAGTTCGTCC+TGG | + | chr3.4:72662244-72662263 | None:intergenic | 35.0% | |
| TCACATGTCCACCATAAAAT+TGG | - | chr3.4:72658052-72658071 | MS.gene29843:intron | 35.0% | |
| TGCTTATAACCGTGTAAATG+GGG | - | chr3.4:72659641-72659660 | MS.gene29843:intron | 35.0% | |
| TGTAGAGAATCAAAGTTCAG+GGG | - | chr3.4:72658704-72658723 | MS.gene29843:CDS | 35.0% | |
| TGTGCTTATAACCGTGTAAA+TGG | - | chr3.4:72659639-72659658 | MS.gene29843:intron | 35.0% | |
| TGTTGCAGGAAAAAATTGGA+TGG | + | chr3.4:72661944-72661963 | None:intergenic | 35.0% | |
| TTGCTGGATTTCCATCAAAT+AGG | + | chr3.4:72661055-72661074 | None:intergenic | 35.0% | |
| TTGTTGAAGCAATGAATGGT+TGG | - | chr3.4:72659777-72659796 | MS.gene29843:intron | 35.0% | |
| TTTAGTCATGAATGCAATGC+AGG | - | chr3.4:72662127-72662146 | MS.gene29843:intron | 35.0% | |
| TTTCAAGGTGGTAAATTGAG+GGG | - | chr3.4:72659256-72659275 | MS.gene29843:intron | 35.0% | |
| TTTGTGAGAGAGAGTGAAAA+CGG | - | chr3.4:72657867-72657886 | MS.gene29843:CDS | 35.0% | |
| ! | AATCTAACAGTTTTGCAGCA+TGG | - | chr3.4:72658924-72658943 | MS.gene29843:CDS | 35.0% |
| ! | AATGATTTTCGGAACAGACA+TGG | + | chr3.4:72661106-72661125 | None:intergenic | 35.0% |
| ! | ATCCAAATCCTATTTTCCGA+TGG | + | chr3.4:72658792-72658811 | None:intergenic | 35.0% |
| ! | ATTTTCAGCCATCAAATGAG+TGG | + | chr3.4:72662371-72662390 | None:intergenic | 35.0% |
| ! | ATTTTGTGTAGCTTAGTCCA+TGG | + | chr3.4:72662294-72662313 | None:intergenic | 35.0% |
| ! | CTATGATTTGGACAATTGGA+AGG | - | chr3.4:72659318-72659337 | MS.gene29843:intron | 35.0% |
| ! | CTTATATTTAAGACCGAACG+TGG | + | chr3.4:72659423-72659442 | None:intergenic | 35.0% |
| ! | GGTGTTATGACATAATACCA+TGG | - | chr3.4:72660768-72660787 | MS.gene29843:CDS | 35.0% |
| ! | TGTTGTTCTTGTTATGGGAT+TGG | - | chr3.4:72661421-72661440 | MS.gene29843:intron | 35.0% |
| ! | TTCTAAGCGACCAGTTATTT+TGG | - | chr3.4:72661532-72661551 | MS.gene29843:intron | 35.0% |
| !! | AAAGGTAAAGGTTGATGAGA+GGG | + | chr3.4:72657348-72657367 | None:intergenic | 35.0% |
| !! | CATAGTTTGTTGTTAGATGC+AGG | - | chr3.4:72662574-72662593 | MS.gene29843:CDS | 35.0% |
| !! | CATTGTCACTTGTCTTTTGT+CGG | - | chr3.4:72660141-72660160 | MS.gene29843:CDS | 35.0% |
| !! | CTTCATGGAATTGGTAATGT+TGG | - | chr3.4:72657620-72657639 | MS.gene29843:CDS | 35.0% |
| !! | TAGTTTGTTGTTAGATGCAG+GGG | - | chr3.4:72662576-72662595 | MS.gene29843:CDS | 35.0% |
| !! | TATGCTGTTTCCTATGTTAG+AGG | - | chr3.4:72659217-72659236 | MS.gene29843:intron | 35.0% |
| !! | TCTTTGGTTCTTTGAGTGAT+CGG | + | chr3.4:72657494-72657513 | None:intergenic | 35.0% |
| !! | TCTTTTGGGTACCAAGTAAT+TGG | + | chr3.4:72662163-72662182 | None:intergenic | 35.0% |
| !! | TTGAGGGAAAGTCTTTTTCA+AGG | + | chr3.4:72660509-72660528 | None:intergenic | 35.0% |
| AAACAGCGTCCTTAACATAG+TGG | + | chr3.4:72661319-72661338 | None:intergenic | 40.0% | |
| AAATATAGGGGGTCAAATCG+TGG | + | chr3.4:72658223-72658242 | None:intergenic | 40.0% | |
| AACTTGGAACCCCATTTACA+CGG | + | chr3.4:72659653-72659672 | None:intergenic | 40.0% | |
| AAGAAACTTCACCTGGATTG+TGG | + | chr3.4:72661685-72661704 | None:intergenic | 40.0% | |
| AAGCTTCCATTTGGCATGAT+TGG | - | chr3.4:72661074-72661093 | MS.gene29843:intron | 40.0% | |
| AAGGACTACCGAATAGCAAA+TGG | - | chr3.4:72658529-72658548 | MS.gene29843:CDS | 40.0% | |
| AAGTTCCAATGACAGACATG+AGG | - | chr3.4:72662191-72662210 | MS.gene29843:intron | 40.0% | |
| AATATAGGGGGTCAAATCGT+GGG | + | chr3.4:72658222-72658241 | None:intergenic | 40.0% | |
| AATCCAGCAAAGCTTCCATT+TGG | - | chr3.4:72661065-72661084 | MS.gene29843:intron | 40.0% | |
| AATCGTACAACCGCAATACT+TGG | - | chr3.4:72658559-72658578 | MS.gene29843:CDS | 40.0% | |
| AATTTGTGCCAAATTGGGAG+GGG | + | chr3.4:72658269-72658288 | None:intergenic | 40.0% | |
| ACCTTGAAGTCCTCTAACAT+AGG | + | chr3.4:72659230-72659249 | None:intergenic | 40.0% | |
| AGACCACTAAAACATCGAAC+CGG | - | chr3.4:72662523-72662542 | MS.gene29843:CDS | 40.0% | |
| AGATTGAAATCGGCACAACT+TGG | + | chr3.4:72659669-72659688 | None:intergenic | 40.0% | |
| AGGACTACCGAATAGCAAAT+GGG | - | chr3.4:72658530-72658549 | MS.gene29843:CDS | 40.0% | |
| AGGGTTTCACCACTATGTTA+AGG | - | chr3.4:72661307-72661326 | MS.gene29843:intron | 40.0% | |
| ATAAGGCTAGGCCTATTTGA+TGG | - | chr3.4:72661041-72661060 | MS.gene29843:intron | 40.0% | |
| ATACAATGGAGGACAAGCAA+TGG | - | chr3.4:72659096-72659115 | MS.gene29843:CDS | 40.0% | |
| ATCGTACAACCGCAATACTT+GGG | - | chr3.4:72658560-72658579 | MS.gene29843:CDS | 40.0% | |
| ATTAGGACCTATGACTGCTA+AGG | + | chr3.4:72661216-72661235 | None:intergenic | 40.0% | |
| CAAAGTTCAGGGGAGTTATT+AGG | - | chr3.4:72658714-72658733 | MS.gene29843:CDS | 40.0% | |
| CACCATCGGAAAATAGGATT+TGG | - | chr3.4:72658787-72658806 | MS.gene29843:CDS | 40.0% | |
| CATCCAGTTAGATTTCACCA+TGG | + | chr3.4:72660788-72660807 | None:intergenic | 40.0% | |
| CCAATGTGAGTCTTGAAACA+AGG | + | chr3.4:72657517-72657536 | None:intergenic | 40.0% | |
| CCTCAATTTACCACCTTGAA+AGG | + | chr3.4:72659257-72659276 | None:intergenic | 40.0% | |
| CCTTTCAAGGTGGTAAATTG+AGG | - | chr3.4:72659254-72659273 | MS.gene29843:intron | 40.0% | |
| CGGAAGTCCTATGAAACAAT+TGG | - | chr3.4:72662543-72662562 | MS.gene29843:CDS | 40.0% | |
| CTCTACAACATGTATGTTGC+AGG | + | chr3.4:72661958-72661977 | None:intergenic | 40.0% | |
| CTGAAATAGAAGTGAAGGTG+AGG | + | chr3.4:72657391-72657410 | None:intergenic | 40.0% | |
| CTTCAAGGTGATTCCTTTCA+AGG | - | chr3.4:72659241-72659260 | MS.gene29843:intron | 40.0% | |
| CTTCATCCATATCGGTATCA+GGG | - | chr3.4:72658677-72658696 | MS.gene29843:CDS | 40.0% | |
| GAAAACAATGGGAATTCCAC+GGG | - | chr3.4:72659706-72659725 | MS.gene29843:intron | 40.0% | |
| GAAGCGAGAGCAATATACAA+TGG | - | chr3.4:72659082-72659101 | MS.gene29843:CDS | 40.0% | |
| GAATAGTCACAAGCAAATGG+TGG | + | chr3.4:72657428-72657447 | None:intergenic | 40.0% | |
| GAGTCTTGAAACAAGGTCTT+TGG | + | chr3.4:72657510-72657529 | None:intergenic | 40.0% | |
| GATTGGATCAAAGTGTAGAG+AGG | - | chr3.4:72661438-72661457 | MS.gene29843:intron | 40.0% | |
| GCTGCTGTAGTAATAACTTG+AGG | + | chr3.4:72657692-72657711 | None:intergenic | 40.0% | |
| GGATCATACATGATGAGCAA+GGG | - | chr3.4:72659871-72659890 | MS.gene29843:intron | 40.0% | |
| GGTCTCGTAAACAGCAATAT+AGG | + | chr3.4:72662508-72662527 | None:intergenic | 40.0% | |
| GTGAAATCTAACTGGATGTC+AGG | - | chr3.4:72660790-72660809 | MS.gene29843:CDS | 40.0% | |
| TACAATGGAGGACAAGCAAT+GGG | - | chr3.4:72659097-72659116 | MS.gene29843:CDS | 40.0% | |
| TAGAAGTGAAGGTGAGGAAA+AGG | + | chr3.4:72657385-72657404 | None:intergenic | 40.0% | |
| TATCTATAGGACCTCCACAA+AGG | + | chr3.4:72661562-72661581 | None:intergenic | 40.0% | |
| TATTTAGGGATCCAAGATGG+GGG | - | chr3.4:72659149-72659168 | MS.gene29843:intron | 40.0% | |
| TCAATGCAACTACGAAATGG+TGG | + | chr3.4:72659594-72659613 | None:intergenic | 40.0% | |
| TCATTCGTCCACTCATTTGA+TGG | - | chr3.4:72662360-72662379 | MS.gene29843:CDS | 40.0% | |
| TCCTATGTTAGAGGACTTCA+AGG | - | chr3.4:72659226-72659245 | MS.gene29843:intron | 40.0% | |
| TGCTCAATGCAACTACGAAA+TGG | + | chr3.4:72659597-72659616 | None:intergenic | 40.0% | |
| TTCATCCATATCGGTATCAG+GGG | - | chr3.4:72658678-72658697 | MS.gene29843:CDS | 40.0% | |
| TTGGAACCAATCATGCCAAA+TGG | + | chr3.4:72661083-72661102 | None:intergenic | 40.0% | |
| TTTCGTAGTTGCATTGAGCA+AGG | - | chr3.4:72659597-72659616 | MS.gene29843:intron | 40.0% | |
| TTTGAGTGATCGGAAGCTTT+GGG | + | chr3.4:72657484-72657503 | None:intergenic | 40.0% | |
| ! | AACTGGTCGCTTAGAAGTTT+TGG | + | chr3.4:72661528-72661547 | None:intergenic | 40.0% |
| ! | AAGAGTTAAAGGGGAAGCAT+TGG | + | chr3.4:72661240-72661259 | None:intergenic | 40.0% |
| ! | AAGCAATGGGGATGACATTT+TGG | - | chr3.4:72659110-72659129 | MS.gene29843:CDS | 40.0% |
| ! | AAGGAAGATGATGGTGACAA+AGG | + | chr3.4:72657366-72657385 | None:intergenic | 40.0% |
| ! | ACTCTTCTAGGAAACTATGC+TGG | - | chr3.4:72661254-72661273 | MS.gene29843:intron | 40.0% |
| ! | AGAAACCTGCAAAAGCATGT+CGG | - | chr3.4:72662432-72662451 | MS.gene29843:CDS | 40.0% |
| ! | AGCAATGGGGATGACATTTT+GGG | - | chr3.4:72659111-72659130 | MS.gene29843:CDS | 40.0% |
| ! | AGTGAAGCACTTCATGGAAT+TGG | - | chr3.4:72657611-72657630 | MS.gene29843:CDS | 40.0% |
| ! | ATTTTCGGAACAGACATGGT+TGG | + | chr3.4:72661102-72661121 | None:intergenic | 40.0% |
| ! | CAGATTTTACAAGGGTCCTA+CGG | - | chr3.4:72662255-72662274 | MS.gene29843:intron | 40.0% |
| ! | CCTTGTTTCAAGACTCACAT+TGG | - | chr3.4:72657514-72657533 | MS.gene29843:CDS | 40.0% |
| ! | CTAACACGCACAAGTTTGTT+TGG | - | chr3.4:72657926-72657945 | MS.gene29843:intron | 40.0% |
| ! | CTGCCTATGATTTGGACAAT+TGG | - | chr3.4:72659314-72659333 | MS.gene29843:intron | 40.0% |
| ! | GATGATGGTGACAAAGGTAA+AGG | + | chr3.4:72657360-72657379 | None:intergenic | 40.0% |
| ! | GTATTGCGGTTGTACGATTT+TGG | + | chr3.4:72658558-72658577 | None:intergenic | 40.0% |
| ! | GTTCCTCTTTTTACCACGTT+CGG | - | chr3.4:72659407-72659426 | MS.gene29843:intron | 40.0% |
| ! | GTTCTTCAGTAGCTGCTTTA+AGG | + | chr3.4:72658953-72658972 | None:intergenic | 40.0% |
| ! | GTTTTTCATCCTGGTTGTGA+TGG | - | chr3.4:72661335-72661354 | MS.gene29843:intron | 40.0% |
| ! | TGACAAGTGACTTGCAGATT+AGG | + | chr3.4:72660087-72660106 | None:intergenic | 40.0% |
| ! | TGTAACGGAAACAAACTCGT+AGG | + | chr3.4:72662320-72662339 | None:intergenic | 40.0% |
| !! | CAAAGGAGCACCAAAATAAC+TGG | + | chr3.4:72661545-72661564 | None:intergenic | 40.0% |
| !! | CAAAGGTAAAGGTTGATGAG+AGG | + | chr3.4:72657349-72657368 | None:intergenic | 40.0% |
| !! | CTAGCTTTGATTCTCACCTT+TGG | - | chr3.4:72657711-72657730 | MS.gene29843:CDS | 40.0% |
| !! | GAAGCTTTGGGTTGCAAAAT+GGG | + | chr3.4:72657472-72657491 | None:intergenic | 40.0% |
| !! | GAATTGGTAATGTTGGACGT+GGG | - | chr3.4:72657627-72657646 | MS.gene29843:CDS | 40.0% |
| !! | GAGTGTTGCTTCATCCATAT+CGG | - | chr3.4:72658669-72658688 | MS.gene29843:CDS | 40.0% |
| !! | GCTTTGAAAATTTGCAGGGA+TGG | - | chr3.4:72660908-72660927 | MS.gene29843:CDS | 40.0% |
| !! | TTATGGTGGACATGTGAGAT+AGG | + | chr3.4:72658049-72658068 | None:intergenic | 40.0% |
| !! | TTTGGCTCCCATTTGCTATT+CGG | + | chr3.4:72658540-72658559 | None:intergenic | 40.0% |
| !!! | GTTATTTTGGTGCTCCTTTG+TGG | - | chr3.4:72661545-72661564 | MS.gene29843:intron | 40.0% |
| AATGGGTAGGATCTGGTTGA+TGG | + | chr3.4:72657455-72657474 | None:intergenic | 45.0% | |
| ACAATGGAGGACAAGCAATG+GGG | - | chr3.4:72659098-72659117 | MS.gene29843:CDS | 45.0% | |
| ACGGTGTATGAATTTGGCCA+TGG | - | chr3.4:72662274-72662293 | MS.gene29843:intron | 45.0% | |
| AGACCGAACGTGGTAAAAAG+AGG | + | chr3.4:72659413-72659432 | None:intergenic | 45.0% | |
| AGAGAGAGTGAAAACGGCTT+AGG | - | chr3.4:72657873-72657892 | MS.gene29843:CDS | 45.0% | |
| AGGGATACCAAGTCTAGGAA+TGG | + | chr3.4:72657576-72657595 | None:intergenic | 45.0% | |
| AGGGTATGCAAAATCAGCAG+AGG | - | chr3.4:72659890-72659909 | MS.gene29843:intron | 45.0% | |
| AGTCATGAATGCAATGCAGG+AGG | - | chr3.4:72662130-72662149 | MS.gene29843:intron | 45.0% | |
| ATACCAAGTCTAGGAATGGG+AGG | + | chr3.4:72657572-72657591 | None:intergenic | 45.0% | |
| ATATAGGGGGTCAAATCGTG+GGG | + | chr3.4:72658221-72658240 | None:intergenic | 45.0% | |
| ATGCCAAATGGAAGCTTTGC+TGG | + | chr3.4:72661071-72661090 | None:intergenic | 45.0% | |
| ATGGGTAGGATCTGGTTGAT+GGG | + | chr3.4:72657454-72657473 | None:intergenic | 45.0% | |
| ATTTGAGCCGAAGCACACTT+TGG | + | chr3.4:72661365-72661384 | None:intergenic | 45.0% | |
| ATTTGTGCCAAATTGGGAGG+GGG | + | chr3.4:72658268-72658287 | None:intergenic | 45.0% | |
| CAAGGTGATTCCTTTCAAGG+TGG | - | chr3.4:72659244-72659263 | MS.gene29843:intron | 45.0% | |
| CACTGTCACCATCGGAAAAT+AGG | - | chr3.4:72658781-72658800 | MS.gene29843:CDS | 45.0% | |
| CTCATCCTCATGTCTGTCAT+TGG | + | chr3.4:72662199-72662218 | None:intergenic | 45.0% | |
| CTTTGAGTGATCGGAAGCTT+TGG | + | chr3.4:72657485-72657504 | None:intergenic | 45.0% | |
| GAGGAAGACTGCCAATTACT+TGG | - | chr3.4:72662149-72662168 | MS.gene29843:intron | 45.0% | |
| GCACGGTCTATTCGAACTAT+AGG | + | chr3.4:72660996-72661015 | None:intergenic | 45.0% | |
| GCCGTGACATATGATTCTTC+AGG | - | chr3.4:72659536-72659555 | MS.gene29843:intron | 45.0% | |
| GCGAGAGCAATATACAATGG+AGG | - | chr3.4:72659085-72659104 | MS.gene29843:CDS | 45.0% | |
| GCGCTTGCACAGATTATCTT+CGG | - | chr3.4:72661656-72661675 | MS.gene29843:intron | 45.0% | |
| GCTCGACTAAGATGTTCACA+AGG | + | chr3.4:72662631-72662650 | None:intergenic | 45.0% | |
| GCTCTTGAAGCTGCAAGAAA+CGG | - | chr3.4:72661134-72661153 | MS.gene29843:intron | 45.0% | |
| GCTTCATCCATATCGGTATC+AGG | - | chr3.4:72658676-72658695 | MS.gene29843:CDS | 45.0% | |
| GCTTCCCCTTTAACTCTTCT+AGG | - | chr3.4:72661242-72661261 | MS.gene29843:intron | 45.0% | |
| GGGATACCAAGTCTAGGAAT+GGG | + | chr3.4:72657575-72657594 | None:intergenic | 45.0% | |
| GGGATCATACATGATGAGCA+AGG | - | chr3.4:72659870-72659889 | MS.gene29843:intron | 45.0% | |
| GGTCCTACGGTGTATGAATT+TGG | - | chr3.4:72662268-72662287 | MS.gene29843:intron | 45.0% | |
| GGTGAGGAAAAGGAAGATGA+TGG | + | chr3.4:72657375-72657394 | None:intergenic | 45.0% | |
| GTTGCAAAATGGGTAGGATC+TGG | + | chr3.4:72657462-72657481 | None:intergenic | 45.0% | |
| GTTGCTGATGTTCTTCATGC+TGG | - | chr3.4:72659918-72659937 | MS.gene29843:intron | 45.0% | |
| TAACCAGGGATACCAAGTCT+AGG | + | chr3.4:72657581-72657600 | None:intergenic | 45.0% | |
| TCGTACAACCGCAATACTTG+GGG | - | chr3.4:72658561-72658580 | MS.gene29843:CDS | 45.0% | |
| TGCAACAAGCAGAAGCTTGA+AGG | + | chr3.4:72659285-72659304 | None:intergenic | 45.0% | |
| TGGCCAAATTCATACACCGT+AGG | + | chr3.4:72662274-72662293 | None:intergenic | 45.0% | |
| TGTCAGATTGTGGAGCTGTT+GGG | - | chr3.4:72659850-72659869 | MS.gene29843:intron | 45.0% | |
| TGTTGTTAGATGCAGGGGAA+AGG | - | chr3.4:72662581-72662600 | MS.gene29843:CDS | 45.0% | |
| TTGGTATCCCTGGTTATCAG+TGG | - | chr3.4:72657585-72657604 | MS.gene29843:CDS | 45.0% | |
| TTTCATCCTGGTTGTGATGG+TGG | - | chr3.4:72661338-72661357 | MS.gene29843:intron | 45.0% | |
| ! | AGGGTCTCATTTGTTGCATG+TGG | - | chr3.4:72662681-72662700 | MS.gene29843:CDS | 45.0% |
| ! | ATGGCTACAGGAGTACAAGT+GGG | + | chr3.4:72660198-72660217 | None:intergenic | 45.0% |
| ! | ATTCCTAGACTTGGTATCCC+TGG | - | chr3.4:72657575-72657594 | MS.gene29843:CDS | 45.0% |
| ! | GGGGTACTACCAAATCATAG+AGG | + | chr3.4:72658249-72658268 | None:intergenic | 45.0% |
| ! | GGGTCTCATTTGTTGCATGT+GGG | - | chr3.4:72662682-72662701 | MS.gene29843:CDS | 45.0% |
| ! | TCTCACCTTTGGTACCGAAT+CGG | - | chr3.4:72657722-72657741 | MS.gene29843:CDS | 45.0% |
| !! | AAAGGGGAAGCATTGGCATT+AGG | + | chr3.4:72661233-72661252 | None:intergenic | 45.0% |
| !! | ATTATCTGGGCTGGTTATCC+CGG | - | chr3.4:72661617-72661636 | MS.gene29843:intron | 45.0% |
| !! | ATTGGAGGTATTATCTGGGC+TGG | - | chr3.4:72661608-72661627 | MS.gene29843:intron | 45.0% |
| !! | CTTCCGGTTCGATGTTTTAG+TGG | + | chr3.4:72662529-72662548 | None:intergenic | 45.0% |
| !! | CTTTGGGTTGCAAAATGGGT+AGG | + | chr3.4:72657468-72657487 | None:intergenic | 45.0% |
| !! | GACTATGAGTGTTGAGTGTC+AGG | - | chr3.4:72658459-72658478 | MS.gene29843:CDS | 45.0% |
| !! | GGAAGCTTTGGGTTGCAAAA+TGG | + | chr3.4:72657473-72657492 | None:intergenic | 45.0% |
| !! | GGAATTGGTAATGTTGGACG+TGG | - | chr3.4:72657626-72657645 | MS.gene29843:CDS | 45.0% |
| !! | TTTTTGGCCCCCAAGTATTG+CGG | + | chr3.4:72658572-72658591 | None:intergenic | 45.0% |
| !!! | AAGGACGCTGTTTTTCATCC+TGG | - | chr3.4:72661326-72661345 | MS.gene29843:intron | 45.0% |
| !!! | ATTTTGGTGCTCCTTTGTGG+AGG | - | chr3.4:72661548-72661567 | MS.gene29843:intron | 45.0% |
| !!! | GTTGCACTGCTGATTTTGCA+TGG | + | chr3.4:72660962-72660981 | None:intergenic | 45.0% |
| !!! | ATATACAAATATTTTAAAAA+TGG | - | chr3.4:72660747-72660766 | MS.gene29843:CDS | 5.0% |
| ACATCTTAGTCGAGCGAACG+AGG | - | chr3.4:72662636-72662655 | MS.gene29843:CDS | 50.0% | |
| ACCATGGGAACATTGTAGGG+AGG | - | chr3.4:72662479-72662498 | MS.gene29843:CDS | 50.0% | |
| ACTGAGAGACACATGGCTAC+AGG | + | chr3.4:72660210-72660229 | None:intergenic | 50.0% | |
| ATCTTCGGTGACCACAATCC+AGG | - | chr3.4:72661671-72661690 | MS.gene29843:intron | 50.0% | |
| ATGTCGGTCTCAGTCACAGT+TGG | - | chr3.4:72662448-72662467 | MS.gene29843:CDS | 50.0% | |
| ATTGAGCAAGGACGAGCTAG+TGG | - | chr3.4:72659609-72659628 | MS.gene29843:intron | 50.0% | |
| CAAATGGTGGTAGCTGAGCA+AGG | + | chr3.4:72657415-72657434 | None:intergenic | 50.0% | |
| CAACTCCCCTGATACCGATA+TGG | + | chr3.4:72658686-72658705 | None:intergenic | 50.0% | |
| CACTCCACCACTGATAACCA+GGG | + | chr3.4:72657595-72657614 | None:intergenic | 50.0% | |
| CGTACAACCGCAATACTTGG+GGG | - | chr3.4:72658562-72658581 | MS.gene29843:CDS | 50.0% | |
| GACTGAGACTGAGAGACACA+TGG | + | chr3.4:72660217-72660236 | None:intergenic | 50.0% | |
| GGACGTGGGATCTTCTTCAA+TGG | - | chr3.4:72657641-72657660 | MS.gene29843:CDS | 50.0% | |
| GTAAGTTCGTCCTGGATAGC+CGG | + | chr3.4:72662236-72662255 | None:intergenic | 50.0% | |
| GTATCCCTGGTTATCAGTGG+TGG | - | chr3.4:72657588-72657607 | MS.gene29843:CDS | 50.0% | |
| GTGTCAGATTGTGGAGCTGT+TGG | - | chr3.4:72659849-72659868 | MS.gene29843:intron | 50.0% | |
| TATAGGGGGTCAAATCGTGG+GGG | + | chr3.4:72658220-72658239 | None:intergenic | 50.0% | |
| TCACTCCACCACTGATAACC+AGG | + | chr3.4:72657596-72657615 | None:intergenic | 50.0% | |
| TGCTTCGGCTCAAATAGACG+AGG | - | chr3.4:72661370-72661389 | MS.gene29843:intron | 50.0% | |
| TTGAGGGAAGCTAGTTGCAG+AGG | + | chr3.4:72657675-72657694 | None:intergenic | 50.0% | |
| TTTGGTCCACCATCACAACC+AGG | + | chr3.4:72661347-72661366 | None:intergenic | 50.0% | |
| ! | ATGAGCTCAAGTTGCTTGCC+TGG | + | chr3.4:72661494-72661513 | None:intergenic | 50.0% |
| ! | CATGGCTACAGGAGTACAAG+TGG | + | chr3.4:72660199-72660218 | None:intergenic | 50.0% |
| ! | GCAGGGATGGATCTAGAATG+TGG | - | chr3.4:72660921-72660940 | MS.gene29843:CDS | 50.0% |
| ! | TGAGACCGACATGCTTTTGC+AGG | + | chr3.4:72662440-72662459 | None:intergenic | 50.0% |
| ! | TGGTGGACCAAAGTGTGCTT+CGG | - | chr3.4:72661355-72661374 | MS.gene29843:intron | 50.0% |
| ! | TGGTGGAGTGAAGCACTTCA+TGG | - | chr3.4:72657605-72657624 | MS.gene29843:CDS | 50.0% |
| !! | CGTGTTCATCTTGACTTGCC+AGG | - | chr3.4:72661473-72661492 | MS.gene29843:intron | 50.0% |
| ATGAGAGCTGATCCCGCAAC+CGG | - | chr3.4:72662214-72662233 | MS.gene29843:intron | 55.0% | |
| GCAGGGGAAAGGAGACATGT+TGG | - | chr3.4:72662592-72662611 | MS.gene29843:CDS | 55.0% | |
| GCCTCCCTACAATGTTCCCA+TGG | + | chr3.4:72662483-72662502 | None:intergenic | 55.0% | |
| GCTCCTCCCATTCCTAGACT+TGG | - | chr3.4:72657566-72657585 | MS.gene29843:CDS | 55.0% | |
| GGGAGAGGACAAGAAACAGC+TGG | - | chr3.4:72659169-72659188 | MS.gene29843:intron | 55.0% | |
| GGTAGTACCCCCTCCCAATT+TGG | - | chr3.4:72658258-72658277 | MS.gene29843:intron | 55.0% | |
| TCTTGTCCTCTCCCCCATCT+TGG | + | chr3.4:72659163-72659182 | None:intergenic | 55.0% | |
| TTCCGATGGTGACAGTGCTG+TGG | + | chr3.4:72658778-72658797 | None:intergenic | 55.0% | |
| ! | CCTTTGGTACCGAATCGGTC+AGG | - | chr3.4:72657727-72657746 | MS.gene29843:CDS | 55.0% |
| !! | CCTGACCGATTCGGTACCAA+AGG | + | chr3.4:72657730-72657749 | None:intergenic | 55.0% |
| !! | CGCGAGCATCGAAGTGAAAG+CGG | + | chr3.4:72659351-72659370 | None:intergenic | 55.0% |
| AGGGATCCAAGATGGGGGAG+AGG | - | chr3.4:72659154-72659173 | MS.gene29843:intron | 60.0% | |
| CGATGGTGACAGTGCTGTGG+CGG | + | chr3.4:72658775-72658794 | None:intergenic | 60.0% | |
| CGCCACAGCACTGTCACCAT+CGG | - | chr3.4:72658773-72658792 | MS.gene29843:CDS | 60.0% | |
| CTTAGTCGAGCGAACGAGGC+TGG | - | chr3.4:72662640-72662659 | MS.gene29843:CDS | 60.0% | |
| TCGTCCTGGATAGCCGGTTG+CGG | + | chr3.4:72662230-72662249 | None:intergenic | 60.0% | |
| CGTCCTGGATAGCCGGTTGC+GGG | + | chr3.4:72662229-72662248 | None:intergenic | 65.0% | |
| GATCCCGCAACCGGCTATCC+AGG | - | chr3.4:72662223-72662242 | MS.gene29843:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 72657341 | 72662738 | 72657341 | ID=MS.gene29843 |
| chr3.4 | mRNA | 72657341 | 72662738 | 72657341 | ID=MS.gene29843.t1;Parent=MS.gene29843 |
| chr3.4 | exon | 72662331 | 72662738 | 72662331 | ID=MS.gene29843.t1.exon1;Parent=MS.gene29843.t1 |
| chr3.4 | CDS | 72662331 | 72662738 | 72662331 | ID=cds.MS.gene29843.t1;Parent=MS.gene29843.t1 |
| chr3.4 | exon | 72660710 | 72661009 | 72660710 | ID=MS.gene29843.t1.exon2;Parent=MS.gene29843.t1 |
| chr3.4 | CDS | 72660710 | 72661009 | 72660710 | ID=cds.MS.gene29843.t1;Parent=MS.gene29843.t1 |
| chr3.4 | exon | 72660352 | 72660521 | 72660352 | ID=MS.gene29843.t1.exon3;Parent=MS.gene29843.t1 |
| chr3.4 | CDS | 72660352 | 72660521 | 72660352 | ID=cds.MS.gene29843.t1;Parent=MS.gene29843.t1 |
| chr3.4 | exon | 72660140 | 72660237 | 72660140 | ID=MS.gene29843.t1.exon4;Parent=MS.gene29843.t1 |
| chr3.4 | CDS | 72660140 | 72660237 | 72660140 | ID=cds.MS.gene29843.t1;Parent=MS.gene29843.t1 |
| chr3.4 | exon | 72658387 | 72659154 | 72658387 | ID=MS.gene29843.t1.exon5;Parent=MS.gene29843.t1 |
| chr3.4 | CDS | 72658387 | 72659154 | 72658387 | ID=cds.MS.gene29843.t1;Parent=MS.gene29843.t1 |
| chr3.4 | exon | 72657341 | 72657930 | 72657341 | ID=MS.gene29843.t1.exon6;Parent=MS.gene29843.t1 |
| chr3.4 | CDS | 72657341 | 72657930 | 72657341 | ID=cds.MS.gene29843.t1;Parent=MS.gene29843.t1 |
| Gene Sequence |
| Protein sequence |
