Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29939.t1 | XP_003630905.1 | 86.9 | 428 | 15 | 6 | 1 | 396 | 1 | 419 | 1.90E-201 | 711.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29939.t1 | Q9CAC1 | 69.6 | 428 | 85 | 8 | 1 | 396 | 1 | 415 | 3.6e-161 | 569.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29939.t1 | G7LAH3 | 86.9 | 428 | 15 | 6 | 1 | 396 | 1 | 419 | 1.4e-201 | 711.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049298 | MS.gene29939 | 0.829724 | 4.39E-55 | -1.69E-46 |
| MS.gene050707 | MS.gene29939 | 0.814172 | 1.76E-51 | -1.69E-46 |
| MS.gene050710 | MS.gene29939 | 0.82376 | 1.16E-53 | -1.69E-46 |
| MS.gene050875 | MS.gene29939 | 0.806268 | 8.93E-50 | -1.69E-46 |
| MS.gene051914 | MS.gene29939 | 0.838077 | 3.56E-57 | -1.69E-46 |
| MS.gene052169 | MS.gene29939 | 0.82911 | 6.18E-55 | -1.69E-46 |
| MS.gene052209 | MS.gene29939 | 0.81582 | 7.60E-52 | -1.69E-46 |
| MS.gene052308 | MS.gene29939 | 0.860699 | 1.72E-63 | -1.69E-46 |
| MS.gene053108 | MS.gene29939 | 0.821681 | 3.55E-53 | -1.69E-46 |
| MS.gene053173 | MS.gene29939 | 0.80808 | 3.69E-50 | -1.69E-46 |
| MS.gene054551 | MS.gene29939 | 0.82112 | 4.78E-53 | -1.69E-46 |
| MS.gene054593 | MS.gene29939 | 0.822447 | 2.36E-53 | -1.69E-46 |
| MS.gene054633 | MS.gene29939 | 0.805159 | 1.53E-49 | -1.69E-46 |
| MS.gene054662 | MS.gene29939 | 0.831805 | 1.36E-55 | -1.69E-46 |
| MS.gene054850 | MS.gene29939 | 0.802538 | 5.35E-49 | -1.69E-46 |
| MS.gene054941 | MS.gene29939 | 0.836418 | 9.47E-57 | -1.69E-46 |
| MS.gene055308 | MS.gene29939 | 0.832811 | 7.64E-56 | -1.69E-46 |
| MS.gene055578 | MS.gene29939 | 0.812887 | 3.38E-51 | -1.69E-46 |
| MS.gene056041 | MS.gene29939 | 0.807037 | 6.15E-50 | -1.69E-46 |
| MS.gene05640 | MS.gene29939 | 0.857798 | 1.28E-62 | -1.69E-46 |
| MS.gene05652 | MS.gene29939 | 0.868371 | 6.86E-66 | -1.69E-46 |
| MS.gene057367 | MS.gene29939 | 0.819419 | 1.17E-52 | -1.69E-46 |
| MS.gene057669 | MS.gene29939 | 0.880221 | 6.56E-70 | -1.69E-46 |
| MS.gene058128 | MS.gene29939 | 0.873148 | 1.84E-67 | -1.69E-46 |
| MS.gene058853 | MS.gene29939 | 0.865286 | 6.59E-65 | -1.69E-46 |
| MS.gene05926 | MS.gene29939 | 0.822219 | 2.66E-53 | -1.69E-46 |
| MS.gene059553 | MS.gene29939 | 0.802997 | 4.30E-49 | -1.69E-46 |
| MS.gene059616 | MS.gene29939 | 0.86863 | 5.66E-66 | -1.69E-46 |
| MS.gene059905 | MS.gene29939 | 0.831167 | 1.95E-55 | -1.69E-46 |
| MS.gene060291 | MS.gene29939 | 0.800154 | 1.65E-48 | -1.69E-46 |
| MS.gene06093 | MS.gene29939 | 0.855148 | 7.66E-62 | -1.69E-46 |
| MS.gene060985 | MS.gene29939 | 0.80477 | 1.84E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29939.t1 | MTR_8g104820 | 86.916 | 428 | 15 | 6 | 1 | 396 | 1 | 419 | 0.0 | 689 |
| MS.gene29939.t1 | MTR_3g117500 | 53.545 | 409 | 143 | 9 | 23 | 396 | 18 | 414 | 2.06e-137 | 403 |
| MS.gene29939.t1 | MTR_4g035955 | 50.243 | 412 | 159 | 7 | 15 | 396 | 1 | 396 | 1.36e-127 | 377 |
| MS.gene29939.t1 | MTR_4g035930 | 50.882 | 397 | 151 | 6 | 30 | 396 | 15 | 397 | 1.79e-125 | 372 |
| MS.gene29939.t1 | MTR_3g080810 | 51.244 | 402 | 150 | 7 | 29 | 396 | 34 | 423 | 4.39e-124 | 369 |
| MS.gene29939.t1 | MTR_1g088190 | 53.117 | 401 | 129 | 8 | 27 | 396 | 36 | 408 | 3.24e-122 | 364 |
| MS.gene29939.t1 | MTR_4g035975 | 47.836 | 439 | 175 | 10 | 14 | 414 | 10 | 432 | 9.37e-115 | 345 |
| MS.gene29939.t1 | MTR_3g010330 | 49.872 | 391 | 157 | 8 | 23 | 387 | 18 | 395 | 2.83e-113 | 341 |
| MS.gene29939.t1 | MTR_8g099410 | 46.287 | 404 | 177 | 9 | 26 | 396 | 24 | 420 | 2.45e-106 | 324 |
| MS.gene29939.t1 | MTR_8g099410 | 45.833 | 408 | 173 | 10 | 26 | 396 | 24 | 420 | 1.26e-105 | 326 |
| MS.gene29939.t1 | MTR_5g085730 | 42.857 | 420 | 194 | 10 | 14 | 396 | 15 | 425 | 1.38e-104 | 320 |
| MS.gene29939.t1 | MTR_3g080190 | 44.056 | 429 | 194 | 11 | 7 | 396 | 13 | 434 | 3.35e-104 | 319 |
| MS.gene29939.t1 | MTR_5g010000 | 44.175 | 412 | 177 | 11 | 26 | 403 | 36 | 428 | 5.35e-102 | 313 |
| MS.gene29939.t1 | MTR_5g009970 | 42.118 | 425 | 193 | 10 | 14 | 403 | 23 | 429 | 3.15e-101 | 311 |
| MS.gene29939.t1 | MTR_3g105230 | 41.565 | 409 | 183 | 10 | 30 | 406 | 30 | 414 | 1.47e-100 | 308 |
| MS.gene29939.t1 | MTR_4g074960 | 46.040 | 404 | 175 | 11 | 28 | 396 | 26 | 421 | 1.14e-99 | 310 |
| MS.gene29939.t1 | MTR_3g023740 | 41.492 | 429 | 191 | 12 | 14 | 406 | 10 | 414 | 2.36e-95 | 295 |
| MS.gene29939.t1 | MTR_5g093590 | 40.460 | 435 | 211 | 12 | 1 | 397 | 6 | 430 | 7.89e-95 | 294 |
| MS.gene29939.t1 | MTR_1g037340 | 43.560 | 427 | 189 | 11 | 5 | 396 | 2 | 411 | 1.78e-92 | 288 |
| MS.gene29939.t1 | MTR_1g088190 | 50.943 | 318 | 98 | 7 | 27 | 316 | 36 | 323 | 3.27e-85 | 264 |
| MS.gene29939.t1 | MTR_5g009970 | 40.274 | 365 | 167 | 9 | 72 | 403 | 9 | 355 | 2.47e-78 | 249 |
| MS.gene29939.t1 | MTR_5g009970 | 38.150 | 346 | 163 | 9 | 91 | 403 | 1 | 328 | 1.91e-65 | 215 |
| MS.gene29939.t1 | MTR_3g113720 | 36.232 | 414 | 207 | 12 | 26 | 396 | 53 | 452 | 1.51e-63 | 213 |
| MS.gene29939.t1 | MTR_8g075990 | 34.940 | 415 | 201 | 13 | 31 | 396 | 64 | 458 | 9.17e-59 | 201 |
| MS.gene29939.t1 | MTR_5g009970 | 41.367 | 278 | 135 | 6 | 136 | 403 | 1 | 260 | 7.60e-57 | 191 |
| MS.gene29939.t1 | MTR_2g028480 | 35.374 | 441 | 200 | 18 | 14 | 388 | 88 | 509 | 1.78e-52 | 186 |
| MS.gene29939.t1 | MTR_3g090540 | 30.995 | 442 | 226 | 18 | 9 | 388 | 79 | 503 | 1.00e-48 | 175 |
| MS.gene29939.t1 | MTR_3g082440 | 33.111 | 450 | 220 | 18 | 12 | 396 | 91 | 524 | 2.79e-47 | 172 |
| MS.gene29939.t1 | MTR_7g108925 | 55.814 | 86 | 33 | 1 | 316 | 396 | 43 | 128 | 1.14e-22 | 96.3 |
| MS.gene29939.t1 | MTR_1g037320 | 43.827 | 162 | 62 | 5 | 91 | 225 | 1 | 160 | 1.34e-18 | 86.3 |
| MS.gene29939.t1 | MTR_0393s0050 | 54.167 | 72 | 33 | 0 | 316 | 387 | 20 | 91 | 3.59e-18 | 82.4 |
| MS.gene29939.t1 | MTR_7g108920 | 58.333 | 48 | 20 | 0 | 213 | 260 | 86 | 133 | 5.49e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29939.t1 | AT1G70710 | 69.626 | 428 | 85 | 8 | 1 | 396 | 1 | 415 | 0.0 | 567 |
| MS.gene29939.t1 | AT1G23210 | 67.299 | 422 | 95 | 7 | 7 | 396 | 5 | 415 | 0.0 | 552 |
| MS.gene29939.t1 | AT4G02290 | 56.436 | 404 | 129 | 7 | 27 | 396 | 49 | 439 | 4.78e-139 | 408 |
| MS.gene29939.t1 | AT4G39010 | 51.613 | 403 | 150 | 8 | 29 | 396 | 28 | 420 | 2.81e-135 | 398 |
| MS.gene29939.t1 | AT1G02800 | 55.276 | 398 | 137 | 7 | 29 | 396 | 42 | 428 | 2.92e-131 | 388 |
| MS.gene29939.t1 | AT4G39010 | 51.344 | 372 | 141 | 7 | 29 | 370 | 28 | 389 | 4.68e-124 | 365 |
| MS.gene29939.t1 | AT1G22880 | 47.482 | 417 | 173 | 8 | 12 | 396 | 6 | 408 | 1.09e-114 | 345 |
| MS.gene29939.t1 | AT4G39000 | 46.798 | 406 | 171 | 8 | 26 | 396 | 21 | 416 | 8.11e-114 | 343 |
| MS.gene29939.t1 | AT1G71380 | 48.010 | 402 | 168 | 7 | 12 | 386 | 6 | 393 | 1.29e-113 | 342 |
| MS.gene29939.t1 | AT1G64390 | 49.010 | 404 | 164 | 10 | 27 | 396 | 22 | 417 | 1.64e-112 | 343 |
| MS.gene29939.t1 | AT4G38990 | 48.309 | 414 | 166 | 11 | 15 | 392 | 9 | 410 | 3.64e-110 | 333 |
| MS.gene29939.t1 | AT4G11050 | 47.549 | 408 | 164 | 11 | 27 | 396 | 23 | 418 | 1.04e-109 | 334 |
| MS.gene29939.t1 | AT4G11050 | 47.549 | 408 | 164 | 11 | 27 | 396 | 23 | 418 | 2.07e-109 | 336 |
| MS.gene29939.t1 | AT4G11050 | 47.549 | 408 | 164 | 11 | 27 | 396 | 23 | 418 | 2.15e-109 | 336 |
| MS.gene29939.t1 | AT4G09740 | 45.714 | 420 | 177 | 9 | 14 | 400 | 7 | 408 | 2.37e-103 | 315 |
| MS.gene29939.t1 | AT4G23560 | 45.000 | 420 | 179 | 10 | 14 | 400 | 8 | 408 | 2.95e-102 | 313 |
| MS.gene29939.t1 | AT2G32990 | 44.231 | 416 | 176 | 12 | 23 | 396 | 32 | 433 | 1.02e-100 | 310 |
| MS.gene29939.t1 | AT4G02290 | 52.353 | 340 | 115 | 7 | 91 | 396 | 1 | 327 | 5.44e-99 | 302 |
| MS.gene29939.t1 | AT3G43860 | 41.801 | 433 | 193 | 11 | 30 | 426 | 34 | 443 | 1.54e-95 | 296 |
| MS.gene29939.t1 | AT3G43860 | 41.801 | 433 | 193 | 11 | 30 | 426 | 34 | 443 | 1.54e-95 | 296 |
| MS.gene29939.t1 | AT2G44550 | 43.951 | 405 | 186 | 10 | 10 | 387 | 14 | 404 | 9.82e-91 | 283 |
| MS.gene29939.t1 | AT2G44540 | 43.641 | 401 | 187 | 9 | 14 | 387 | 17 | 405 | 1.23e-89 | 280 |
| MS.gene29939.t1 | AT1G22880 | 48.795 | 332 | 129 | 7 | 12 | 316 | 6 | 323 | 3.89e-88 | 271 |
| MS.gene29939.t1 | AT2G44570 | 44.340 | 424 | 184 | 14 | 11 | 396 | 11 | 420 | 2.06e-87 | 275 |
| MS.gene29939.t1 | AT2G44560 | 43.415 | 410 | 191 | 10 | 7 | 387 | 8 | 405 | 7.66e-87 | 273 |
| MS.gene29939.t1 | AT1G48930 | 44.691 | 405 | 176 | 11 | 29 | 396 | 29 | 422 | 8.50e-86 | 275 |
| MS.gene29939.t1 | AT4G38990 | 45.924 | 368 | 144 | 9 | 15 | 358 | 9 | 345 | 1.05e-85 | 266 |
| MS.gene29939.t1 | AT1G22880 | 44.379 | 338 | 142 | 8 | 91 | 396 | 1 | 324 | 1.09e-81 | 257 |
| MS.gene29939.t1 | AT2G44570 | 42.260 | 407 | 188 | 13 | 11 | 384 | 11 | 403 | 2.73e-77 | 246 |
| MS.gene29939.t1 | AT1G19940 | 38.060 | 402 | 204 | 9 | 30 | 396 | 48 | 439 | 5.46e-71 | 233 |
| MS.gene29939.t1 | AT1G19940 | 38.060 | 402 | 204 | 9 | 30 | 396 | 48 | 439 | 5.46e-71 | 233 |
| MS.gene29939.t1 | AT1G75680 | 39.312 | 407 | 200 | 12 | 26 | 396 | 53 | 448 | 6.76e-68 | 225 |
| MS.gene29939.t1 | AT1G19940 | 37.197 | 371 | 193 | 8 | 30 | 370 | 48 | 408 | 9.33e-62 | 206 |
| MS.gene29939.t1 | AT5G49720 | 33.775 | 453 | 216 | 18 | 16 | 400 | 87 | 523 | 1.11e-47 | 173 |
| MS.gene29939.t1 | AT1G65610 | 32.662 | 447 | 225 | 18 | 12 | 396 | 91 | 523 | 2.34e-45 | 166 |
| MS.gene29939.t1 | AT4G24260 | 35.349 | 430 | 202 | 19 | 30 | 398 | 108 | 522 | 3.61e-45 | 166 |
| MS.gene29939.t1 | AT4G24260 | 34.343 | 396 | 189 | 18 | 30 | 369 | 108 | 488 | 1.02e-35 | 137 |
| MS.gene29939.t1 | AT4G24260 | 35.802 | 324 | 146 | 14 | 30 | 302 | 108 | 420 | 1.41e-32 | 128 |
| MS.gene29939.t1 | AT3G42153 | 38.614 | 101 | 53 | 4 | 214 | 314 | 16 | 107 | 7.02e-12 | 62.8 |
Find 0 sgRNAs with CRISPR-Local
Find 373 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTTAATTTAATTAAT+TGG | + | 57578:4422-4441 | MS.gene29939:intron | 0.0% |
| !! | AAATTAAATGAAACTAATTA+AGG | - | 57578:5821-5840 | MS.gene29939:intergenic | 10.0% |
| !! | AATTAAATGAAACTAATTAA+GGG | - | 57578:5820-5839 | MS.gene29939:intergenic | 10.0% |
| !! | CTATTAAAAAAAATTAAATC+AGG | + | 57578:5254-5273 | MS.gene29939:intron | 10.0% |
| !!! | TAATATTCATATTTTATTGA+TGG | - | 57578:6466-6485 | MS.gene29939:intergenic | 10.0% |
| !!! | TTTAGTTTATTTAATATAAC+CGG | - | 57578:5214-5233 | MS.gene29939:intergenic | 10.0% |
| !! | AAAAGAAAAAACATTAATGA+TGG | - | 57578:6752-6771 | MS.gene29939:intergenic | 15.0% |
| !! | AATCTCATAAATAAATTCAA+TGG | - | 57578:5652-5671 | MS.gene29939:intergenic | 15.0% |
| !! | ATTAAATGAAACTAATTAAG+GGG | - | 57578:5819-5838 | MS.gene29939:intergenic | 15.0% |
| !! | TTAAAAAAATGAAGAAAGAA+AGG | - | 57578:3656-3675 | MS.gene29939:intergenic | 15.0% |
| !! | TTATTTAAATGCTATAATCA+CGG | - | 57578:6683-6702 | MS.gene29939:intergenic | 15.0% |
| !!! | CATTTAATTTTTTTTAGTTC+TGG | + | 57578:5831-5850 | MS.gene29939:intron | 15.0% |
| !!! | TTTAATTTGACTTATCTAAT+TGG | + | 57578:5306-5325 | MS.gene29939:intron | 15.0% |
| !! | AAAAAGTGAAATTAAATTCC+CGG | - | 57578:3828-3847 | MS.gene29939:intergenic | 20.0% |
| !! | ATGATTAATGTATGCATATT+GGG | - | 57578:5000-5019 | MS.gene29939:intergenic | 20.0% |
| !! | CTCAAAAGTCAAAAATAAAT+GGG | - | 57578:6648-6667 | MS.gene29939:intergenic | 20.0% |
| !! | GCTTGAATAATAAACAAAAA+CGG | - | 57578:5578-5597 | MS.gene29939:intergenic | 20.0% |
| !! | TATGATTAATGTATGCATAT+TGG | - | 57578:5001-5020 | MS.gene29939:intergenic | 20.0% |
| !! | TCTCAAAAGTCAAAAATAAA+TGG | - | 57578:6649-6668 | MS.gene29939:intergenic | 20.0% |
| !! | TTAAAAAAAAGTTACCACAA+TGG | - | 57578:6195-6214 | MS.gene29939:intergenic | 20.0% |
| !!! | AATATTATTTTATCTTGTGC+AGG | + | 57578:6479-6498 | MS.gene29939:intron | 20.0% |
| !!! | AATTTGTCTTTAAAACTTGT+AGG | + | 57578:5691-5710 | MS.gene29939:intron | 20.0% |
| !!! | ATCTAATCAAGTTTAAGATA+AGG | - | 57578:5166-5185 | MS.gene29939:intergenic | 20.0% |
| !!! | ATTTTTTTTAGTTCTGGAAA+TGG | + | 57578:5837-5856 | MS.gene29939:intron | 20.0% |
| !!! | CAATTTTCAACAACTTTTTA+GGG | - | 57578:4293-4312 | MS.gene29939:intergenic | 20.0% |
| !!! | CTAAAAAAAGCAATTTTGTT+TGG | + | 57578:3709-3728 | MS.gene29939:intron | 20.0% |
| !!! | TAAAATTTTCCGTTAAGATA+TGG | + | 57578:3922-3941 | MS.gene29939:intron | 20.0% |
| !!! | TAATGTTTTTTCTTTTTGCA+AGG | + | 57578:6756-6775 | MS.gene29939:intron | 20.0% |
| !!! | TCTGTTTTTTTAATTTGTTG+TGG | + | 57578:3154-3173 | MS.gene29939:intron | 20.0% |
| !!! | TTATTTTTGACTTTTGAGAA+AGG | + | 57578:6650-6669 | MS.gene29939:intron | 20.0% |
| !!! | TTCATTTTTAAGTTTCATGT+GGG | + | 57578:5550-5569 | MS.gene29939:intron | 20.0% |
| !!! | TTGTTATTGTCCAATAATAA+TGG | + | 57578:4253-4272 | MS.gene29939:intron | 20.0% |
| !!! | TTTCATTTTTAAGTTTCATG+TGG | + | 57578:5549-5568 | MS.gene29939:intron | 20.0% |
| !!! | TTTTTTATCTTATATTGCAC+AGG | - | 57578:6442-6461 | MS.gene29939:intergenic | 20.0% |
| !!! | TTTTTTTCTGTTATGAATCA+CGG | + | 57578:3868-3887 | MS.gene29939:intron | 20.0% |
| ! | AAAAACATTAATGATGGCTT+AGG | - | 57578:6746-6765 | MS.gene29939:intergenic | 25.0% |
| ! | ATAACAATAGAGAGAGAAAA+AGG | - | 57578:4240-4259 | MS.gene29939:intergenic | 25.0% |
| ! | ATGAGATTGATTGATATCAA+GGG | + | 57578:5664-5683 | MS.gene29939:intron | 25.0% |
| ! | ATTAATTGGAAAATCACTTG+TGG | + | 57578:4436-4455 | MS.gene29939:intron | 25.0% |
| ! | CCTAAAAAGTTGTTGAAAAT+TGG | + | 57578:4291-4310 | MS.gene29939:intron | 25.0% |
| ! | GTAATACAGTAAGTATTAAG+AGG | - | 57578:4333-4352 | MS.gene29939:intergenic | 25.0% |
| ! | GTTAACAATGTAAAAAAGGT+GGG | + | 57578:6928-6947 | MS.gene29939:intron | 25.0% |
| ! | GTTGGTTAACAATGTAAAAA+AGG | + | 57578:6924-6943 | MS.gene29939:intron | 25.0% |
| ! | TATCTATCCAAAAAGTCATT+GGG | + | 57578:6341-6360 | MS.gene29939:intron | 25.0% |
| ! | TATGAGATTGATTGATATCA+AGG | + | 57578:5663-5682 | MS.gene29939:intron | 25.0% |
| ! | TCACAAAAGTTGTTGAAAAT+TGG | - | 57578:4172-4191 | MS.gene29939:intergenic | 25.0% |
| ! | TGAAATTGTGCAGAAAATAA+TGG | - | 57578:5903-5922 | MS.gene29939:intergenic | 25.0% |
| ! | TGATGTTGAAAACAAGAAAT+TGG | - | 57578:7149-7168 | MS.gene29939:intergenic | 25.0% |
| ! | TGTGGTGTGAAAATAATTAA+TGG | - | 57578:5088-5107 | MS.gene29939:intergenic | 25.0% |
| ! | TTAAAAAAACAGAGCAATGT+AGG | - | 57578:3147-3166 | MS.gene29939:intergenic | 25.0% |
| ! | TTATCTATCCAAAAAGTCAT+TGG | + | 57578:6340-6359 | MS.gene29939:intron | 25.0% |
| ! | TTATTGTCCAATAATAATGG+AGG | + | 57578:4256-4275 | MS.gene29939:intron | 25.0% |
| !! | AATTTGACTTATCTAATTGG+TGG | + | 57578:5309-5328 | MS.gene29939:intron | 25.0% |
| !! | ACTAAGTACTACAGTATTTT+AGG | + | 57578:4677-4696 | MS.gene29939:intron | 25.0% |
| !! | ATTATTTGTTACTATGTGTG+TGG | + | 57578:4768-4787 | MS.gene29939:intron | 25.0% |
| !! | ATTTGACTTATCTAATTGGT+GGG | + | 57578:5310-5329 | MS.gene29939:intron | 25.0% |
| !! | ATTTTCTCACCATATCTTAA+CGG | - | 57578:3934-3953 | MS.gene29939:intergenic | 25.0% |
| !! | CCAATTTTCAACAACTTTTT+AGG | - | 57578:4294-4313 | MS.gene29939:intergenic | 25.0% |
| !! | TTATTTGTTACTATGTGTGT+GGG | + | 57578:4769-4788 | MS.gene29939:intron | 25.0% |
| !!! | AACCACTTTTAAATTTACCA+CGG | - | 57578:3766-3785 | MS.gene29939:intergenic | 25.0% |
| !!! | TCTCTAAGATTAGTAGTATT+TGG | + | 57578:4363-4382 | MS.gene29939:intron | 25.0% |
| AAAAGGAAGAGAGAGAATAA+AGG | - | 57578:4223-4242 | MS.gene29938:intergenic | 30.0% | |
| AAACTTGTAGGACTAGAATT+TGG | + | 57578:5703-5722 | MS.gene29939:intron | 30.0% | |
| AAAGAAACAAACAAACACTG+TGG | - | 57578:6878-6897 | MS.gene29939:intergenic | 30.0% | |
| AACCGTGGTAAATTTAAAAG+TGG | + | 57578:3761-3780 | MS.gene29939:intron | 30.0% | |
| AACTGTGCACAATACTAAAT+AGG | - | 57578:6827-6846 | MS.gene29939:intergenic | 30.0% | |
| AACTTGTAGGACTAGAATTT+GGG | + | 57578:5704-5723 | MS.gene29939:intron | 30.0% | |
| AATGAGGGAATATATATACC+TGG | - | 57578:6612-6631 | MS.gene29939:intergenic | 30.0% | |
| AATTGGAATAAGCTAGTAAC+AGG | - | 57578:7007-7026 | MS.gene29939:intergenic | 30.0% | |
| ACATACAAACACTCAATCTA+AGG | - | 57578:6787-6806 | MS.gene29939:intergenic | 30.0% | |
| ACATTGTTAACCAACAAAAG+AGG | - | 57578:6919-6938 | MS.gene29939:intergenic | 30.0% | |
| ACGTGATATATACACAAAGT+TGG | + | 57578:7241-7260 | MS.gene29939:intron | 30.0% | |
| ACTAGGTTAACTACATTCTT+GGG | + | 57578:7327-7346 | MS.gene29939:intron | 30.0% | |
| ACTGTGCACAATACTAAATA+GGG | - | 57578:6826-6845 | MS.gene29939:intergenic | 30.0% | |
| AGAATACATTATTCGTAACG+AGG | + | 57578:4524-4543 | MS.gene29939:CDS | 30.0% | |
| AGGAATAATAGAGTCCTAAT+TGG | - | 57578:4966-4985 | MS.gene29939:intergenic | 30.0% | |
| ATCCAAAGTTCCAATTATCA+CGG | - | 57578:5609-5628 | MS.gene29939:intergenic | 30.0% | |
| ATGAATGTACCTTAGAAATG+AGG | - | 57578:4616-4635 | MS.gene29939:intergenic | 30.0% | |
| ATGAGGGAATATATATACCT+GGG | - | 57578:6611-6630 | MS.gene29939:intergenic | 30.0% | |
| ATGTTTATGTGAGTACAGAT+TGG | + | 57578:5405-5424 | MS.gene29939:intron | 30.0% | |
| CAAAGAAAAGAATGCTCTTA+CGG | - | 57578:3005-3024 | MS.gene29939:intergenic | 30.0% | |
| CAAGAAATATGATGTTGATG+GGG | - | 57578:5969-5988 | MS.gene29939:intergenic | 30.0% | |
| CACAATTTCACTTTCTATCA+GGG | + | 57578:5913-5932 | MS.gene29939:intron | 30.0% | |
| CACAGTTATTATTGCATAGA+CGG | + | 57578:6840-6859 | MS.gene29939:intron | 30.0% | |
| CGTTTACATCACAGTAAAAT+GGG | - | 57578:4049-4068 | MS.gene29939:intergenic | 30.0% | |
| CTGCTTCAATGAAATTAACA+GGG | - | 57578:4653-4672 | MS.gene29939:intergenic | 30.0% | |
| GATTATTGTCCTCATTTCTA+AGG | + | 57578:4604-4623 | MS.gene29939:CDS | 30.0% | |
| GCAAGAAATATGATGTTGAT+GGG | - | 57578:5970-5989 | MS.gene29939:intergenic | 30.0% | |
| GGTTAACAATGTAAAAAAGG+TGG | + | 57578:6927-6946 | MS.gene29939:intron | 30.0% | |
| TAACATTTCCCTACAAGAAA+AGG | - | 57578:5995-6014 | MS.gene29939:intergenic | 30.0% | |
| TAATGTATGCATATTGGGAA+TGG | - | 57578:4995-5014 | MS.gene29939:intergenic | 30.0% | |
| TACTAGGTTAACTACATTCT+TGG | + | 57578:7326-7345 | MS.gene29939:intron | 30.0% | |
| TAGGACTCTATTATTCCTAT+TGG | + | 57578:4968-4987 | MS.gene29939:intron | 30.0% | |
| TCAACATCAGACAAAACTAA+CGG | + | 57578:7160-7179 | MS.gene29939:intron | 30.0% | |
| TCAAGATAGCAATGAGAAAA+GGG | + | 57578:5485-5504 | MS.gene29939:intron | 30.0% | |
| TGAGATTGATTGATATCAAG+GGG | + | 57578:5665-5684 | MS.gene29939:intron | 30.0% | |
| TGCAAGAAATATGATGTTGA+TGG | - | 57578:5971-5990 | MS.gene29939:intergenic | 30.0% | |
| TGTTCCAAATGTTTACGATA+TGG | - | 57578:5786-5805 | MS.gene29939:intergenic | 30.0% | |
| TTTATTTGTTCAACATTGCC+TGG | + | 57578:6558-6577 | MS.gene29939:CDS | 30.0% | |
| TTTCAATACCAATCACCAAA+CGG | - | 57578:5464-5483 | MS.gene29939:intergenic | 30.0% | |
| ! | AAGAAATATGATGTTGATGG+GGG | - | 57578:5968-5987 | MS.gene29939:intergenic | 30.0% |
| ! | AGAGGAAGTTTGAGTTATTT+AGG | - | 57578:6901-6920 | MS.gene29939:intergenic | 30.0% |
| ! | CCAATAATAATGGAGGAAAA+AGG | + | 57578:4263-4282 | MS.gene29939:intron | 30.0% |
| ! | CCATTTTACTGTGATGTAAA+CGG | + | 57578:4047-4066 | MS.gene29939:CDS | 30.0% |
| ! | CCTTTTTCCTCCATTATTAT+TGG | - | 57578:4266-4285 | MS.gene29939:intergenic | 30.0% |
| ! | TACAAAACCCAATGACTTTT+TGG | - | 57578:6351-6370 | MS.gene29939:intergenic | 30.0% |
| ! | TAGAAAAAGCTTTATCCGTT+TGG | + | 57578:5446-5465 | MS.gene29939:intron | 30.0% |
| ! | TATAACCGGTTTACTATAAG+CGG | - | 57578:5200-5219 | MS.gene29939:intergenic | 30.0% |
| !! | AAAAGTCATTGGGTTTTGTA+CGG | + | 57578:6351-6370 | MS.gene29939:intron | 30.0% |
| !! | AGTAGGAGTATTTAATACTG+AGG | + | 57578:4131-4150 | MS.gene29939:intron | 30.0% |
| !! | ATTATTTTATCTTGTGCAGG+AGG | + | 57578:6482-6501 | MS.gene29939:intron | 30.0% |
| !! | GATTGATTTTGGAAGAGTAA+TGG | + | 57578:3278-3297 | MS.gene29939:intron | 30.0% |
| !! | TAATTTGTTGTGGTTGTTTC+AGG | + | 57578:3164-3183 | MS.gene29939:intron | 30.0% |
| !!! | AAGAGCATTCTTTTCTTTGA+AGG | + | 57578:3006-3025 | MS.gene29939:CDS | 30.0% |
| !!! | TTTTTAGTTCTGGAAATGGA+TGG | + | 57578:5841-5860 | MS.gene29939:intron | 30.0% |
| AACAGAACAATACCTCTTGA+TGG | + | 57578:4100-4119 | MS.gene29939:intron | 35.0% | |
| ACAATGGTGTGTTACAAGAA+AGG | - | 57578:6179-6198 | MS.gene29939:intergenic | 35.0% | |
| ACACCATTAATGAGTTTGGT+TGG | + | 57578:4565-4584 | MS.gene29939:CDS | 35.0% | |
| AGGGAACTTTATCACTAGAT+TGG | - | 57578:4905-4924 | MS.gene29939:intergenic | 35.0% | |
| ATGCATGGTACAACAAGAAA+GGG | + | 57578:5381-5400 | MS.gene29939:intron | 35.0% | |
| CAAGATAGCAATGAGAAAAG+GGG | + | 57578:5486-5505 | MS.gene29939:intron | 35.0% | |
| CAATGGTGTGTTACAAGAAA+GGG | - | 57578:6178-6197 | MS.gene29939:intergenic | 35.0% | |
| CACCATTAATGAGTTTGGTT+GGG | + | 57578:4566-4585 | MS.gene29939:CDS | 35.0% | |
| CCAAATGTTTACGATATGGA+GGG | - | 57578:5782-5801 | MS.gene29939:intergenic | 35.0% | |
| CCGTTTACATCACAGTAAAA+TGG | - | 57578:4050-4069 | MS.gene29939:intergenic | 35.0% | |
| CTAGGTTAACTACATTCTTG+GGG | + | 57578:7328-7347 | MS.gene29939:intron | 35.0% | |
| CTTCAATGAAATTAACAGGG+AGG | - | 57578:4650-4669 | MS.gene29939:intergenic | 35.0% | |
| GCACAATTTCACTTTCTATC+AGG | + | 57578:5912-5931 | MS.gene29939:intron | 35.0% | |
| GCTGCTTCAATGAAATTAAC+AGG | - | 57578:4654-4673 | MS.gene29939:intergenic | 35.0% | |
| GCTTTAATCTGAACCAAACT+GGG | + | 57578:5741-5760 | MS.gene29939:intron | 35.0% | |
| GGCAAAACAAAACACAATGA+GGG | - | 57578:6627-6646 | MS.gene29939:intergenic | 35.0% | |
| GGTCCCAAAGAATTAATCAA+CGG | - | 57578:7128-7147 | MS.gene29939:intergenic | 35.0% | |
| GTAATCCGCTTATAGTAAAC+CGG | + | 57578:5192-5211 | MS.gene29939:intron | 35.0% | |
| GTCAAGATAGCAATGAGAAA+AGG | + | 57578:5484-5503 | MS.gene29939:intron | 35.0% | |
| GTCCCAAAGAATTAATCAAC+GGG | - | 57578:7127-7146 | MS.gene29939:intergenic | 35.0% | |
| TACTGAATAGTACCATCAAG+AGG | - | 57578:4115-4134 | MS.gene29939:intergenic | 35.0% | |
| TATGCATGGTACAACAAGAA+AGG | + | 57578:5380-5399 | MS.gene29939:intron | 35.0% | |
| TATTGCATAGACGGCAATAT+TGG | + | 57578:6849-6868 | MS.gene29939:intron | 35.0% | |
| TCCAAATGTTTACGATATGG+AGG | - | 57578:5783-5802 | MS.gene29939:intergenic | 35.0% | |
| TCCCAAAGAATTAATCAACG+GGG | - | 57578:7126-7145 | MS.gene29939:intergenic | 35.0% | |
| TGAGGGAATATATATACCTG+GGG | - | 57578:6610-6629 | MS.gene29939:intergenic | 35.0% | |
| TTAAAGGCGACGTCAAATAT+AGG | + | 57578:3353-3372 | MS.gene29939:CDS | 35.0% | |
| TTATGAATCACGGAGTTAGT+TGG | + | 57578:3878-3897 | MS.gene29939:intron | 35.0% | |
| TTCCGTGATAATTGGAACTT+TGG | + | 57578:5604-5623 | MS.gene29939:intron | 35.0% | |
| TTGTGCAGAAAATAATGGTG+AGG | - | 57578:5898-5917 | MS.gene29939:intergenic | 35.0% | |
| TTTCTTGTAACACACCATTG+TGG | + | 57578:6178-6197 | MS.gene29939:intron | 35.0% | |
| ! | ACTCAAACTTCCTCTTTTGT+TGG | + | 57578:6906-6925 | MS.gene29939:intron | 35.0% |
| ! | AGAAGCAATTTAGAGTAAGC+AGG | - | 57578:3562-3581 | MS.gene29939:intergenic | 35.0% |
| ! | CGTTGCTTTCATTTACTACT+AGG | + | 57578:7310-7329 | MS.gene29939:intron | 35.0% |
| ! | GGAAAATCACTTGTGGTTTT+AGG | + | 57578:4443-4462 | MS.gene29939:intron | 35.0% |
| ! | TCCCCGTTGATTAATTCTTT+GGG | + | 57578:7122-7141 | MS.gene29939:intron | 35.0% |
| ! | TCTTGATGGTACTATTCAGT+AGG | + | 57578:4114-4133 | MS.gene29939:intron | 35.0% |
| ! | TCTTGCATCCTTTTCTTGTA+GGG | + | 57578:5984-6003 | MS.gene29939:intron | 35.0% |
| ! | TTCCCCGTTGATTAATTCTT+TGG | + | 57578:7121-7140 | MS.gene29939:intron | 35.0% |
| ! | TTCTTGCATCCTTTTCTTGT+AGG | + | 57578:5983-6002 | MS.gene29939:intron | 35.0% |
| !! | AAAGTCATTGGGTTTTGTAC+GGG | + | 57578:6352-6371 | MS.gene29939:intron | 35.0% |
| !! | TTAAGTGAAGTGCTCTGTTT+TGG | - | 57578:5060-5079 | MS.gene29939:intergenic | 35.0% |
| !!! | GTTTTAGGATGAGTTGCTTT+GGG | + | 57578:4458-4477 | MS.gene29939:intron | 35.0% |
| AAACCCTAACCCAAATGTCT+TGG | + | 57578:7495-7514 | MS.gene29939:CDS | 40.0% | |
| ACAAACAGACCACGTGATAA+GGG | - | 57578:4924-4943 | MS.gene29939:intergenic | 40.0% | |
| AGAGAGAAGATTGCATGGAA+TGG | - | 57578:3617-3636 | MS.gene29939:intergenic | 40.0% | |
| ATGTGAAATGAGGCTTACTC+CGG | - | 57578:3109-3128 | MS.gene29939:intergenic | 40.0% | |
| ATTCTGTTAGGTCAGAGACA+CGG | + | 57578:6375-6394 | MS.gene29939:intron | 40.0% | |
| ATTGGCATGGCTTAGGTAAT+TGG | - | 57578:7024-7043 | MS.gene29939:intergenic | 40.0% | |
| CAAGAAAGGGTCATGTTAAC+CGG | - | 57578:6165-6184 | MS.gene29939:intergenic | 40.0% | |
| CAGAAGAAACACAATGCATG+TGG | - | 57578:5106-5125 | MS.gene29939:intergenic | 40.0% | |
| CATATTGGGAATGGACCAAT+AGG | - | 57578:4986-5005 | MS.gene29939:intergenic | 40.0% | |
| CCCTCCATATCGTAAACATT+TGG | + | 57578:5779-5798 | MS.gene29939:intron | 40.0% | |
| CGCTTTAATCTGAACCAAAC+TGG | + | 57578:5740-5759 | MS.gene29939:intron | 40.0% | |
| CGTAACGTATCCATATCTTC+CGG | - | 57578:3439-3458 | MS.gene29939:intergenic | 40.0% | |
| CTGGTTAAGGAAGCTAAAAG+TGG | - | 57578:6129-6148 | MS.gene29939:intergenic | 40.0% | |
| CTGTGATGTAAACGGTTATC+AGG | + | 57578:4055-4074 | MS.gene29939:CDS | 40.0% | |
| GAATCTATGACACGATGAAG+AGG | + | 57578:5340-5359 | MS.gene29939:intron | 40.0% | |
| GAGAGAAGATTGCATGGAAT+GGG | - | 57578:3616-3635 | MS.gene29939:intergenic | 40.0% | |
| GATAAAGTTCCCTTATCACG+TGG | + | 57578:4912-4931 | MS.gene29939:intron | 40.0% | |
| GCAAGACATTCCGTGATAAT+TGG | + | 57578:5596-5615 | MS.gene29939:intron | 40.0% | |
| GCACAGTTTACAAGATCGAT+GGG | + | 57578:3458-3477 | MS.gene29939:CDS | 40.0% | |
| GGAATAAGCTAGTAACAGGA+AGG | - | 57578:7003-7022 | MS.gene29939:intergenic | 40.0% | |
| GGGCAAAACAAAACACAATG+AGG | - | 57578:6628-6647 | MS.gene29939:intergenic | 40.0% | |
| GGTGACACCATTAATGAGTT+TGG | + | 57578:4561-4580 | MS.gene29939:CDS | 40.0% | |
| GTCCCAACCAAACTCATTAA+TGG | - | 57578:4571-4590 | MS.gene29939:intergenic | 40.0% | |
| GTGATGCACTTTCTCCAATT+AGG | + | 57578:4949-4968 | MS.gene29939:intron | 40.0% | |
| GTTACCATAACCAACCATGT+AGG | - | 57578:7372-7391 | MS.gene29939:intergenic | 40.0% | |
| TCAAGTCGGTGATCCTTTAT+CGG | + | 57578:3394-3413 | MS.gene29939:intron | 40.0% | |
| TTAATCTGAACCAAACTGGG+TGG | + | 57578:5744-5763 | MS.gene29939:intron | 40.0% | |
| TTAATGATGGCTTAGGCCTT+TGG | - | 57578:6739-6758 | MS.gene29939:intergenic | 40.0% | |
| TTACAACGACGATGTTAGCT+TGG | + | 57578:3250-3269 | MS.gene29939:CDS | 40.0% | |
| TTACCTAAGCCATGCCAATA+AGG | + | 57578:7025-7044 | MS.gene29939:CDS | 40.0% | |
| TTGTAGGACTAGAATTTGGG+TGG | + | 57578:5707-5726 | MS.gene29939:intron | 40.0% | |
| ! | AAAAGGTGGGCTTATCTTCA+AGG | + | 57578:6941-6960 | MS.gene29939:intron | 40.0% |
| ! | AAGACATTTGGGTTAGGGTT+TGG | - | 57578:7496-7515 | MS.gene29939:intergenic | 40.0% |
| ! | ACAGAGCACTATGTGAAATG+AGG | - | 57578:3119-3138 | MS.gene29939:intergenic | 40.0% |
| ! | AGACATTTGGGTTAGGGTTT+GGG | - | 57578:7495-7514 | MS.gene29939:intergenic | 40.0% |
| ! | AGCTTTATCCGTTTGGTGAT+TGG | + | 57578:5453-5472 | MS.gene29939:intron | 40.0% |
| ! | ATGTCCTACATGGTTGGTTA+TGG | + | 57578:7365-7384 | MS.gene29939:CDS | 40.0% |
| ! | ATGTTGATGGGGGCTTAAAA+AGG | - | 57578:5958-5977 | MS.gene29939:intergenic | 40.0% |
| ! | CAACCAAGACATTTGGGTTA+GGG | - | 57578:7501-7520 | MS.gene29939:intergenic | 40.0% |
| ! | GTTTTGTACGGGATTCTGTT+AGG | + | 57578:6363-6382 | MS.gene29939:intron | 40.0% |
| ! | TAAATTCCCGGTAAAGTGCT+TGG | - | 57578:3816-3835 | MS.gene29939:intergenic | 40.0% |
| ! | TATCTAATTGGTGGGTCACA+TGG | + | 57578:5318-5337 | MS.gene29939:intron | 40.0% |
| ! | TTTGTTGTGGTTGTTTCAGG+TGG | + | 57578:3167-3186 | MS.gene29939:intron | 40.0% |
| !! | AAGGCTTTTGAGTAATGCAG+GGG | - | 57578:7078-7097 | MS.gene29939:intergenic | 40.0% |
| !! | CAAGGCTTTTGAGTAATGCA+GGG | - | 57578:7079-7098 | MS.gene29939:intergenic | 40.0% |
| !! | GCTTGGAGTGTGATTGATTT+TGG | + | 57578:3267-3286 | MS.gene29939:intron | 40.0% |
| !!! | CTGTTTTGGTGTTTTGCTTG+TGG | - | 57578:5046-5065 | MS.gene29939:intergenic | 40.0% |
| !!! | GGGAACGGACTATCTTTTAA+AGG | + | 57578:3337-3356 | MS.gene29939:CDS | 40.0% |
| !!! | GGTTTTAGGATGAGTTGCTT+TGG | + | 57578:4457-4476 | MS.gene29939:intron | 40.0% |
| AACGGGGAATGCAAGACAAT+AGG | - | 57578:4837-4856 | MS.gene29939:intergenic | 45.0% | |
| ACAGCTCCAACCAAGACATT+TGG | - | 57578:7508-7527 | MS.gene29939:intergenic | 45.0% | |
| ACCACATGGCACAACCTTAT+TGG | - | 57578:7042-7061 | MS.gene29939:intergenic | 45.0% | |
| ACCATGTAGGACATTCCCAA+CGG | - | 57578:7359-7378 | MS.gene29939:intergenic | 45.0% | |
| ACTTGTGCGTGAGAAAATCC+AGG | - | 57578:6579-6598 | MS.gene29939:intergenic | 45.0% | |
| AGCTAGTAACAGGAAGGACA+AGG | - | 57578:6997-7016 | MS.gene29939:intergenic | 45.0% | |
| AGGGAATTGAGCTTCCTCTA+TGG | - | 57578:7414-7433 | MS.gene29939:intergenic | 45.0% | |
| AGTTACAGCAGTGACAGCAA+GGG | - | 57578:6227-6246 | MS.gene29939:intergenic | 45.0% | |
| ATCACGTGATCTGAACACGA+TGG | - | 57578:3539-3558 | MS.gene29939:intergenic | 45.0% | |
| ATCCAGCTTTGCATCCAATG+TGG | - | 57578:7456-7475 | MS.gene29939:intergenic | 45.0% | |
| ATCGTCGTTGTAAACGCCAT+CGG | - | 57578:3243-3262 | MS.gene29939:intergenic | 45.0% | |
| ATGGCACAACCTTATTGGCA+TGG | - | 57578:7037-7056 | MS.gene29939:intergenic | 45.0% | |
| ATTCTTGGGGATAACCCGTT+GGG | + | 57578:7341-7360 | MS.gene29939:CDS | 45.0% | |
| ATTGTCTTGCATTCCCCGTT+AGG | + | 57578:4837-4856 | MS.gene29939:intron | 45.0% | |
| CAACCTTATTGGCATGGCTT+AGG | - | 57578:7031-7050 | MS.gene29939:intergenic | 45.0% | |
| CACAAACAGACCACGTGATA+AGG | - | 57578:4925-4944 | MS.gene29939:intergenic | 45.0% | |
| CACATGCATAGTGCAGTACT+GGG | - | 57578:5873-5892 | MS.gene29939:intergenic | 45.0% | |
| CAGCTCCAACCAAGACATTT+GGG | - | 57578:7507-7526 | MS.gene29939:intergenic | 45.0% | |
| CCTAACCCAAATGTCTTGGT+TGG | + | 57578:7499-7518 | MS.gene29939:CDS | 45.0% | |
| CGCACAGTTTACAAGATCGA+TGG | + | 57578:3457-3476 | MS.gene29939:CDS | 45.0% | |
| CTCTATGGTGTATCCTCTGT+GGG | - | 57578:7399-7418 | MS.gene29939:intergenic | 45.0% | |
| CTTTATCGGACCACAACTGT+GGG | + | 57578:3408-3427 | MS.gene29939:intron | 45.0% | |
| GAGAGAGAGAGAAGATTGCA+TGG | - | 57578:3622-3641 | MS.gene29939:intergenic | 45.0% | |
| GATATGGAGGGCAAAGAGTT+TGG | - | 57578:5770-5789 | MS.gene29939:intergenic | 45.0% | |
| GCACAAGTTCAATATTCCCC+AGG | + | 57578:6591-6610 | MS.gene29939:CDS | 45.0% | |
| GCGACGTCAAATATAGGTTC+CGG | + | 57578:3359-3378 | MS.gene29939:CDS | 45.0% | |
| GGTGAGAAAATGACCGTTGA+TGG | + | 57578:3943-3962 | MS.gene29939:intron | 45.0% | |
| GTAACGCGTTGAAATCAGTG+AGG | + | 57578:3312-3331 | MS.gene29939:CDS | 45.0% | |
| GTAGAAAACTAGCGAAACCG+TGG | + | 57578:3746-3765 | MS.gene29939:intron | 45.0% | |
| TCCAGCTTTGCATCCAATGT+GGG | - | 57578:7455-7474 | MS.gene29939:intergenic | 45.0% | |
| TGTGCAACTGTGCATATGCA+TGG | + | 57578:5366-5385 | MS.gene29939:intron | 45.0% | |
| TTCTGTTAGGTCAGAGACAC+GGG | + | 57578:6376-6395 | MS.gene29939:intron | 45.0% | |
| TTGGGAATGTCCTACATGGT+TGG | + | 57578:7359-7378 | MS.gene29939:CDS | 45.0% | |
| ! | CATAAAGTTCGGGTTTCCGA+TGG | + | 57578:3224-3243 | MS.gene29939:CDS | 45.0% |
| ! | CCAACCAAGACATTTGGGTT+AGG | - | 57578:7502-7521 | MS.gene29939:intergenic | 45.0% |
| ! | GAGAAAATGACCGTTGATGG+TGG | + | 57578:3946-3965 | MS.gene29939:intron | 45.0% |
| ! | TTCTTTGAAGGACAACGCTC+TGG | + | 57578:3018-3037 | MS.gene29939:CDS | 45.0% |
| ! | TTGTTTCAGGTGGACTTGAC+CGG | + | 57578:3177-3196 | MS.gene29939:intron | 45.0% |
| !! | AAGAGTAATGGACCTGAGCT+AGG | + | 57578:3290-3309 | MS.gene29939:intron | 45.0% |
| !! | CTTGTGCAGGAGGTGTTAAT+GGG | + | 57578:6492-6511 | MS.gene29939:intron | 45.0% |
| !! | GCAAGGCTTTTGAGTAATGC+AGG | - | 57578:7080-7099 | MS.gene29939:intergenic | 45.0% |
| !! | TCTTGTGCAGGAGGTGTTAA+TGG | + | 57578:6491-6510 | MS.gene29939:intron | 45.0% |
| !!! | AACGAGGTTGTTTTGAGAGC+TGG | + | 57578:4540-4559 | MS.gene29939:CDS | 45.0% |
| AAATGTTAACCAGTGCCCCC+GGG | + | 57578:6007-6026 | MS.gene29939:intron | 50.0% | |
| AAGAGTTTGGCCACCCAGTT+TGG | - | 57578:5757-5776 | MS.gene29939:intergenic | 50.0% | |
| AATGAAGCTGACCTGGCGTT+TGG | - | 57578:7102-7121 | MS.gene29939:intergenic | 50.0% | |
| ACCCATGTGTCCATGACCAA+AGG | + | 57578:6720-6739 | MS.gene29939:intron | 50.0% | |
| ACGCGTTGAAATCAGTGAGG+TGG | + | 57578:3315-3334 | MS.gene29939:CDS | 50.0% | |
| AGCATCGTGATAGTCGTGAC+CGG | - | 57578:2980-2999 | MS.gene29939:intergenic | 50.0% | |
| AGTAAAATGGGCACACTGCC+CGG | - | 57578:4037-4056 | MS.gene29939:intergenic | 50.0% | |
| ATACAGTAACAGCCTACGCC+GGG | + | 57578:4016-4035 | MS.gene29939:CDS | 50.0% | |
| ATGAAAGCGACGCACCGTAA+CGG | - | 57578:3592-3611 | MS.gene29939:intergenic | 50.0% | |
| ATGGCTTAGGCCTTTGGTCA+TGG | - | 57578:6733-6752 | MS.gene29939:intergenic | 50.0% | |
| CACACACTCACCACCATCAA+CGG | - | 57578:3959-3978 | MS.gene29939:intergenic | 50.0% | |
| CAGTTACAGCAGTGACAGCA+AGG | - | 57578:6228-6247 | MS.gene29939:intergenic | 50.0% | |
| CATACAGTAACAGCCTACGC+CGG | + | 57578:4015-4034 | MS.gene29939:CDS | 50.0% | |
| CATTCTTGGGGATAACCCGT+TGG | + | 57578:7340-7359 | MS.gene29939:CDS | 50.0% | |
| CCACAGAGGATACACCATAG+AGG | + | 57578:7397-7416 | MS.gene29939:CDS | 50.0% | |
| CCACAGTTGTGGTCCGATAA+AGG | - | 57578:3410-3429 | MS.gene29939:intergenic | 50.0% | |
| CCATGTAGGACATTCCCAAC+GGG | - | 57578:7358-7377 | MS.gene29939:intergenic | 50.0% | |
| CCCATTCCAAGCACTTTACC+GGG | + | 57578:3807-3826 | MS.gene29939:intron | 50.0% | |
| CCCGAACTTTATGTTGTCGC+CGG | - | 57578:3217-3236 | MS.gene29939:intergenic | 50.0% | |
| CCGGCGACAACATAAAGTTC+GGG | + | 57578:3214-3233 | MS.gene29939:CDS | 50.0% | |
| CCTCTATGGTGTATCCTCTG+TGG | - | 57578:7400-7419 | MS.gene29939:intergenic | 50.0% | |
| CCTTTATCGGACCACAACTG+TGG | + | 57578:3407-3426 | MS.gene29939:intron | 50.0% | |
| CGATTGTTCGGAGCAAAAGG+AGG | - | 57578:2954-2973 | MS.gene29939:intergenic | 50.0% | |
| CGCGTTGAAATCAGTGAGGT+GGG | + | 57578:3316-3335 | MS.gene29939:CDS | 50.0% | |
| CGTCGTGAATTCCAGAGTCA+CGG | - | 57578:3077-3096 | MS.gene29939:intergenic | 50.0% | |
| GAAATCAGTGAGGTGGGGAA+CGG | + | 57578:3322-3341 | MS.gene29939:CDS | 50.0% | |
| GAAATGTTAACCAGTGCCCC+CGG | + | 57578:6006-6025 | MS.gene29939:intron | 50.0% | |
| GACTTGAACAAACACCACGC+CGG | - | 57578:3381-3400 | MS.gene29939:intergenic | 50.0% | |
| GCACATGCATAGTGCAGTAC+TGG | - | 57578:5874-5893 | MS.gene29939:intergenic | 50.0% | |
| GCCAATAAGGTTGTGCCATG+TGG | + | 57578:7038-7057 | MS.gene29939:CDS | 50.0% | |
| GCCCATTCCAAGCACTTTAC+CGG | + | 57578:3806-3825 | MS.gene29939:intron | 50.0% | |
| GCCGGCGACAACATAAAGTT+CGG | + | 57578:3213-3232 | MS.gene29939:CDS | 50.0% | |
| GCCTTTGGTCATGGACACAT+GGG | - | 57578:6724-6743 | MS.gene29939:intergenic | 50.0% | |
| GCGTTGAAATCAGTGAGGTG+GGG | + | 57578:3317-3336 | MS.gene29939:CDS | 50.0% | |
| GGCGTGGTGTTTGTTCAAGT+CGG | + | 57578:3380-3399 | MS.gene29939:intron | 50.0% | |
| GTCAAATATAGGTTCCGGCG+TGG | + | 57578:3364-3383 | MS.gene29939:CDS | 50.0% | |
| TAACTCCTTAACCAGTGCCC+CGG | - | 57578:6028-6047 | MS.gene29939:intergenic | 50.0% | |
| TCGGAGCAAAAGGAGGAGTA+TGG | - | 57578:2947-2966 | MS.gene29939:intergenic | 50.0% | |
| TCTGAACACGATGGAAGCAG+CGG | - | 57578:3530-3549 | MS.gene29939:intergenic | 50.0% | |
| TCTGTATAGACGTCTACGCG+AGG | - | 57578:4505-4524 | MS.gene29939:intergenic | 50.0% | |
| TGAAATGAGGCTTACTCCGG+CGG | - | 57578:3106-3125 | MS.gene29939:intergenic | 50.0% | |
| TTCAACGCGTTACCTAGCTC+AGG | - | 57578:3305-3324 | MS.gene29939:intergenic | 50.0% | |
| ! | ATGCATAGTGCAGTACTGGG+TGG | - | 57578:5870-5889 | MS.gene29939:intergenic | 50.0% |
| ! | CCCGGTAAAGTGCTTGGAAT+GGG | - | 57578:3810-3829 | MS.gene29939:intergenic | 50.0% |
| ! | TATGGTAACGCTACCCACAG+AGG | + | 57578:7383-7402 | MS.gene29939:CDS | 50.0% |
| ! | TCCCGGTAAAGTGCTTGGAA+TGG | - | 57578:3811-3830 | MS.gene29939:intergenic | 50.0% |
| ! | TGCATAGTGCAGTACTGGGT+GGG | - | 57578:5869-5888 | MS.gene29939:intergenic | 50.0% |
| ! | TGCTTCTCATCGTGCCGTTA+CGG | + | 57578:3575-3594 | MS.gene29939:intron | 50.0% |
| !! | CGTGACTCTGGAATTCACGA+CGG | + | 57578:3075-3094 | MS.gene29939:CDS | 50.0% |
| !! | GAGTTTGCTGACAGACATCG+TGG | + | 57578:3990-4009 | MS.gene29939:CDS | 50.0% |
| !! | GCTTTTGAGTAATGCAGGGG+TGG | - | 57578:7075-7094 | MS.gene29939:intergenic | 50.0% |
| AACTCCTTAACCAGTGCCCC+GGG | - | 57578:6027-6046 | MS.gene29939:intergenic | 55.0% | |
| AAGATCGATGGGTCCCATCC+AGG | + | 57578:3469-3488 | MS.gene29939:CDS | 55.0% | |
| AATGTTAACCAGTGCCCCCG+GGG | + | 57578:6008-6027 | MS.gene29939:intron | 55.0% | |
| ACCACAACTGTGGGAGAGAC+CGG | + | 57578:3417-3436 | MS.gene29939:intron | 55.0% | |
| ACGGGGAAATGAAGCTGACC+TGG | - | 57578:7109-7128 | MS.gene29939:intergenic | 55.0% | |
| AGCTTCCTTAACCAGTGCCC+CGG | + | 57578:6134-6153 | MS.gene29939:intron | 55.0% | |
| AGTGGAGACGCTGATCAGAC+GGG | - | 57578:3050-3069 | MS.gene29939:intergenic | 55.0% | |
| ATCGTGATAGTCGTGACCGG+CGG | - | 57578:2977-2996 | MS.gene29939:intergenic | 55.0% | |
| CAAAAGCCTTGCCAAACGCC+AGG | + | 57578:7088-7107 | MS.gene29939:CDS | 55.0% | |
| CAGCAGTGACAGCAAGGGAA+AGG | - | 57578:6222-6241 | MS.gene29939:intergenic | 55.0% | |
| CAGTGGAGACGCTGATCAGA+CGG | - | 57578:3051-3070 | MS.gene29939:intergenic | 55.0% | |
| CCCGTTGGGAATGTCCTACA+TGG | + | 57578:7355-7374 | MS.gene29939:CDS | 55.0% | |
| CGGCGATTGTTCGGAGCAAA+AGG | - | 57578:2957-2976 | MS.gene29939:intergenic | 55.0% | |
| GCATTCCCCGTTAGGCATGT+GGG | + | 57578:4845-4864 | MS.gene29939:intron | 55.0% | |
| GCCCACATTGGATGCAAAGC+TGG | + | 57578:7451-7470 | MS.gene29939:CDS | 55.0% | |
| GCTTTGCATCCAATGTGGGC+TGG | - | 57578:7451-7470 | MS.gene29939:intergenic | 55.0% | |
| GGCCTTTGGTCATGGACACA+TGG | - | 57578:6725-6744 | MS.gene29939:intergenic | 55.0% | |
| GGGCTTATCTTCAAGGCTGG+TGG | + | 57578:6948-6967 | MS.gene29939:CDS | 55.0% | |
| GGTTGGGACAACAAGCATGC+TGG | + | 57578:4582-4601 | MS.gene29939:CDS | 55.0% | |
| GTGGGAGAGACCGGAAGATA+TGG | + | 57578:3426-3445 | MS.gene29939:intron | 55.0% | |
| TATGGCGAGGACGCGAAATG+TGG | - | 57578:2929-2948 | MS.gene29939:intergenic | 55.0% | |
| TGCATTCCCCGTTAGGCATG+TGG | + | 57578:4844-4863 | MS.gene29939:intron | 55.0% | |
| ! | ATGGTGGTGAGTGTGTGTGC+AGG | + | 57578:3962-3981 | MS.gene29939:intron | 55.0% |
| ! | GCAAAAGGAGGAGTATGGCG+AGG | - | 57578:2942-2961 | MS.gene29939:intergenic | 55.0% |
| ! | GGTGGGCTTATCTTCAAGGC+TGG | + | 57578:6945-6964 | MS.gene29939:intron | 55.0% |
| ! | TTTCAGGTGGACTTGACCGG+AGG | + | 57578:3180-3199 | MS.gene29939:intron | 55.0% |
| !! | GCATCCAATGTGGGCTGGAT+GGG | - | 57578:7446-7465 | MS.gene29939:intergenic | 55.0% |
| !! | GCTGGATGGGCTGAAACTGA+GGG | - | 57578:7433-7452 | MS.gene29939:intergenic | 55.0% |
| !! | TGCATCCAATGTGGGCTGGA+TGG | - | 57578:7447-7466 | MS.gene29939:intergenic | 55.0% |
| AATGAGGCTTACTCCGGCGG+TGG | - | 57578:3103-3122 | MS.gene29939:intergenic | 60.0% | |
| ACCGGAGGTTACTACGACGC+CGG | + | 57578:3195-3214 | MS.gene29939:CDS | 60.0% | |
| ACTCCTTAACCAGTGCCCCG+GGG | - | 57578:6026-6045 | MS.gene29939:intergenic | 60.0% | |
| AGCTGACCTGGCGTTTGGCA+AGG | - | 57578:7097-7116 | MS.gene29939:intergenic | 60.0% | |
| CGTCTGATCAGCGTCTCCAC+TGG | + | 57578:3049-3068 | MS.gene29939:CDS | 60.0% | |
| CTGCGCACCCACATGCCTAA+CGG | - | 57578:4855-4874 | MS.gene29939:intergenic | 60.0% | |
| CTTCCTTAACCAGTGCCCCG+GGG | + | 57578:6136-6155 | MS.gene29939:intron | 60.0% | |
| GAGTAATGCAGGGGTGGCAG+TGG | - | 57578:7069-7088 | MS.gene29939:intergenic | 60.0% | |
| GCTTCCTTAACCAGTGCCCC+GGG | + | 57578:6135-6154 | MS.gene29939:intron | 60.0% | |
| GTCATGTTAACCGGTGCCCC+CGG | - | 57578:6156-6175 | MS.gene29939:intergenic | 60.0% | |
| TCAGCCCATCCAGCCCACAT+TGG | + | 57578:7439-7458 | MS.gene29939:CDS | 60.0% | |
| TCATGTTAACCGGTGCCCCC+GGG | - | 57578:6155-6174 | MS.gene29939:intergenic | 60.0% | |
| TCCGGTCTCTCCCACAGTTG+TGG | - | 57578:3421-3440 | MS.gene29939:intergenic | 60.0% | |
| TGCCACGTCGGATCCTGGAT+GGG | - | 57578:3485-3504 | MS.gene29939:intergenic | 60.0% | |
| TGCGCACCCACATGCCTAAC+GGG | - | 57578:4854-4873 | MS.gene29939:intergenic | 60.0% | |
| TTCCTTAACCAGTGCCCCGG+GGG | + | 57578:6137-6156 | MS.gene29939:intron | 60.0% | |
| TTGCTCCGAACAATCGCCGC+CGG | + | 57578:2958-2977 | MS.gene29939:CDS | 60.0% | |
| ! | AGTTGCTTTGGGCTGCAGCG+TGG | + | 57578:4469-4488 | MS.gene29939:CDS | 60.0% |
| !! | GGCTGGATGGGCTGAAACTG+AGG | - | 57578:7434-7453 | MS.gene29939:intergenic | 60.0% |
| !! | GTGGCAGTGGTGTCACCACA+TGG | - | 57578:7056-7075 | MS.gene29939:intergenic | 60.0% |
| CATCCAGGATCCGACGTGGC+AGG | + | 57578:3484-3503 | MS.gene29939:CDS | 65.0% | |
| CATGTTAACCGGTGCCCCCG+GGG | - | 57578:6154-6173 | MS.gene29939:intergenic | 65.0% | |
| CGTGACCGGCGGCGATTGTT+CGG | - | 57578:2966-2985 | MS.gene29939:intergenic | 65.0% | |
| CTCCTTAACCAGTGCCCCGG+GGG | - | 57578:6025-6044 | MS.gene29939:intergenic | 65.0% | |
| CTGCCACGTCGGATCCTGGA+TGG | - | 57578:3486-3505 | MS.gene29939:intergenic | 65.0% | |
| GCCGGCGTCGTAGTAACCTC+CGG | - | 57578:3199-3218 | MS.gene29939:intergenic | 65.0% | |
| GCGCACCCACATGCCTAACG+GGG | - | 57578:4853-4872 | MS.gene29939:intergenic | 65.0% | |
| GGAAGCAGCGGCAAGTGCAG+CGG | - | 57578:3518-3537 | MS.gene29939:intergenic | 65.0% | |
| GGCGGTTTCACCTGCCACGT+CGG | - | 57578:3497-3516 | MS.gene29939:intergenic | 65.0% | |
| GGCTGCAGCGTGGTTGCACA+AGG | + | 57578:4479-4498 | MS.gene29939:CDS | 65.0% | |
| GTCCCATCCAGGATCCGACG+TGG | + | 57578:3480-3499 | MS.gene29939:CDS | 65.0% | |
| TCACCTGCCACGTCGGATCC+TGG | - | 57578:3490-3509 | MS.gene29939:intergenic | 65.0% | |
| TTCCAGAGTCACGGCGCCAG+TGG | - | 57578:3068-3087 | MS.gene29939:intergenic | 65.0% | |
| !! | ATTCACGACGGTGCCACCGC+CGG | + | 57578:3087-3106 | MS.gene29939:CDS | 65.0% |
| AGCAGCGGCAAGTGCAGCGG+CGG | - | 57578:3515-3534 | MS.gene29939:intergenic | 70.0% | |
| ATGGGCACACTGCCCGGCGT+AGG | - | 57578:4031-4050 | MS.gene29939:intergenic | 70.0% | |
| CTCCACTGGCGCCGTGACTC+TGG | + | 57578:3063-3082 | MS.gene29939:CDS | 70.0% | |
| !! | TGCCCCCGGGGCACTGGTTA+AGG | + | 57578:6020-6039 | MS.gene29939:intron | 70.0% |
| !! | TGCCCCCGGGGCACTGGTTA+AGG | - | 57578:6039-6020 | MS.gene29939:intergenic | 70.0% |
| AACCAGTGCCCCCGGGGCAC+TGG | + | 57578:6014-6033 | MS.gene29939:intron | 75.0% | |
| ! | AACCAGTGCCCCGGGGGCAC+CGG | + | 57578:6143-6162 | MS.gene29939:intron | 75.0% |
| ! | AACCAGTGCCCCGGGGGCAC+TGG | - | 57578:6162-6143 | MS.gene29939:intergenic | 75.0% |
| ! | AACCGGTGCCCCCGGGGCAC+TGG | - | 57578:6148-6167 | MS.gene29939:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 57578 | gene | 2898 | 7529 | 2898 | ID=MS.gene29939 |
| 57578 | mRNA | 2898 | 7529 | 2898 | ID=MS.gene29939.t1;Parent=MS.gene29939 |
| 57578 | exon | 2898 | 3110 | 2898 | ID=MS.gene29939.t1.exon1;Parent=MS.gene29939.t1 |
| 57578 | CDS | 2898 | 3110 | 2898 | ID=cds.MS.gene29939.t1;Parent=MS.gene29939.t1 |
| 57578 | exon | 3186 | 3275 | 3186 | ID=MS.gene29939.t1.exon2;Parent=MS.gene29939.t1 |
| 57578 | CDS | 3186 | 3275 | 3186 | ID=cds.MS.gene29939.t1;Parent=MS.gene29939.t1 |
| 57578 | exon | 3308 | 3397 | 3308 | ID=MS.gene29939.t1.exon3;Parent=MS.gene29939.t1 |
| 57578 | CDS | 3308 | 3397 | 3308 | ID=cds.MS.gene29939.t1;Parent=MS.gene29939.t1 |
| 57578 | exon | 3433 | 3585 | 3433 | ID=MS.gene29939.t1.exon4;Parent=MS.gene29939.t1 |
| 57578 | CDS | 3433 | 3585 | 3433 | ID=cds.MS.gene29939.t1;Parent=MS.gene29939.t1 |
| 57578 | exon | 3984 | 4076 | 3984 | ID=MS.gene29939.t1.exon5;Parent=MS.gene29939.t1 |
| 57578 | CDS | 3984 | 4076 | 3984 | ID=cds.MS.gene29939.t1;Parent=MS.gene29939.t1 |
| 57578 | exon | 4465 | 4653 | 4465 | ID=MS.gene29939.t1.exon6;Parent=MS.gene29939.t1 |
| 57578 | CDS | 4465 | 4653 | 4465 | ID=cds.MS.gene29939.t1;Parent=MS.gene29939.t1 |
| 57578 | exon | 6501 | 6612 | 6501 | ID=MS.gene29939.t1.exon7;Parent=MS.gene29939.t1 |
| 57578 | CDS | 6501 | 6612 | 6501 | ID=cds.MS.gene29939.t1;Parent=MS.gene29939.t1 |
| 57578 | exon | 6946 | 7109 | 6946 | ID=MS.gene29939.t1.exon8;Parent=MS.gene29939.t1 |
| 57578 | CDS | 6946 | 7109 | 6946 | ID=cds.MS.gene29939.t1;Parent=MS.gene29939.t1 |
| 57578 | exon | 7332 | 7529 | 7332 | ID=MS.gene29939.t1.exon9;Parent=MS.gene29939.t1 |
| 57578 | CDS | 7332 | 7529 | 7332 | ID=cds.MS.gene29939.t1;Parent=MS.gene29939.t1 |
| Gene Sequence |
| Protein sequence |
