AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene30525


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30525.t1 MTR_4g065040 97.551 490 12 0 1 490 1 490 0.0 985
MS.gene30525.t1 MTR_2g097950 71.546 485 136 2 3 487 19 501 0.0 731
MS.gene30525.t1 MTR_2g097950 66.116 484 127 3 4 487 20 466 0.0 659
MS.gene30525.t1 MTR_8g076480 57.023 477 198 2 9 481 13 486 0.0 576
MS.gene30525.t1 MTR_1g029840 50.638 470 229 1 9 478 20 486 9.35e-170 488
MS.gene30525.t1 MTR_1g029840 50.638 470 229 1 9 478 20 486 6.76e-168 483
MS.gene30525.t1 MTR_8g094600 51.064 470 227 1 9 478 73 539 2.13e-165 478
MS.gene30525.t1 MTR_3g088150 50.426 470 230 1 9 478 22 488 1.60e-164 474
MS.gene30525.t1 MTR_1222s0010 37.600 375 223 5 9 381 9 374 1.01e-72 244
MS.gene30525.t1 MTR_1314s0010 36.047 344 201 5 105 437 1 336 3.99e-65 214
MS.gene30525.t1 MTR_2g034160 28.375 437 279 12 12 424 88 514 2.31e-37 145
MS.gene30525.t1 MTR_3g078490 28.850 461 306 11 4 451 79 530 1.83e-36 142
MS.gene30525.t1 MTR_2g067660 29.080 337 227 9 101 431 178 508 4.54e-35 137
MS.gene30525.t1 MTR_4g106510 28.918 453 289 13 20 451 60 500 2.54e-34 135
MS.gene30525.t1 MTR_3g078550 27.983 461 310 11 4 451 19 470 4.47e-34 134
MS.gene30525.t1 MTR_3g078550 27.983 461 310 11 4 451 49 500 6.28e-34 134
MS.gene30525.t1 MTR_3g078170 29.197 411 269 14 38 438 135 533 1.34e-29 122
MS.gene30525.t1 MTR_8g083530 29.830 352 224 12 99 438 154 494 2.23e-29 121
MS.gene30525.t1 MTR_4g107040 29.318 440 282 17 13 438 111 535 4.46e-29 120
MS.gene30525.t1 MTR_6g086300 30.398 352 222 12 99 438 153 493 4.42e-28 117
MS.gene30525.t1 MTR_6g086300 30.398 352 222 12 99 438 153 493 4.42e-28 117
MS.gene30525.t1 MTR_8g064170 29.684 411 267 15 38 438 134 532 1.21e-27 116
MS.gene30525.t1 MTR_4g020720 62.353 85 30 1 175 259 119 201 6.82e-27 109
MS.gene30525.t1 MTR_6g086340 29.641 334 210 12 104 424 156 477 8.79e-24 104
MS.gene30525.t1 MTR_8g064170 29.024 410 239 17 38 438 134 500 2.97e-22 100
MS.gene30525.t1 MTR_4g131180 29.063 320 213 10 105 420 158 467 3.19e-22 99.8
MS.gene30525.t1 MTR_3g078170 28.916 332 214 14 38 358 135 455 6.11e-21 95.9
MS.gene30525.t1 MTR_8g083520 25.926 351 206 10 99 438 65 372 1.46e-20 94.0
MS.gene30525.t1 MTR_8g083520 25.926 351 206 10 99 438 145 452 3.10e-20 93.6
MS.gene30525.t1 MTR_4g131180 28.296 311 209 9 105 411 158 458 6.61e-20 92.8
MS.gene30525.t1 MTR_4g020710 58.571 70 29 0 293 362 16 85 9.58e-20 85.9
MS.gene30525.t1 MTR_3g078490 30.742 283 186 6 4 281 49 326 4.59e-19 89.0
MS.gene30525.t1 MTR_1g014320 26.959 319 221 7 105 420 158 467 4.72e-19 90.1
MS.gene30525.t1 MTR_4g093170 26.462 359 229 11 102 440 174 517 5.16e-18 87.0
MS.gene30525.t1 MTR_2g009750 26.257 358 231 10 102 440 147 490 3.32e-17 84.7
MS.gene30525.t1 MTR_2g009750 26.257 358 230 10 102 440 146 488 4.19e-17 84.3
MS.gene30525.t1 MTR_2g009750 26.257 358 230 10 102 440 147 489 4.28e-17 84.3
MS.gene30525.t1 MTR_2g042330 25.779 353 241 11 102 444 152 493 2.14e-16 82.0
MS.gene30525.t1 MTR_3g078170 28.713 303 196 13 38 330 135 427 3.14e-16 81.3
MS.gene30525.t1 MTR_3g078170 28.713 303 196 13 38 330 135 427 3.20e-16 81.3
MS.gene30525.t1 MTR_8g083530 35.556 180 100 8 104 273 159 332 7.28e-15 76.6
MS.gene30525.t1 MTR_1690s0010 30.583 206 131 8 105 304 146 345 2.19e-14 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30525.t1 AT4G36250 54.105 475 218 0 7 481 10 484 0.0 559
MS.gene30525.t1 AT1G44170 50.417 480 234 2 1 479 7 483 5.57e-169 485
MS.gene30525.t1 AT1G44170 50.417 480 234 2 1 479 7 483 5.57e-169 485
MS.gene30525.t1 AT4G34240 51.059 472 228 1 12 483 82 550 2.43e-163 474
MS.gene30525.t1 AT4G34240 51.059 472 228 1 12 483 67 535 2.44e-163 473
MS.gene30525.t1 AT1G44170 52.530 415 194 1 65 479 9 420 1.68e-157 454
MS.gene30525.t1 AT4G34240 51.951 410 194 1 74 483 2 408 1.04e-146 426
MS.gene30525.t1 AT4G34240 52.885 312 144 1 12 323 82 390 4.55e-101 308
MS.gene30525.t1 AT1G74920 28.966 435 291 11 27 451 69 495 2.01e-38 146
MS.gene30525.t1 AT1G74920 28.966 435 291 11 27 451 74 500 2.46e-38 146
MS.gene30525.t1 AT3G66658 26.923 442 299 9 20 442 96 532 4.00e-38 147
MS.gene30525.t1 AT3G66658 26.552 467 314 10 20 462 96 557 4.30e-38 147
MS.gene30525.t1 AT1G79440 30.267 337 223 9 101 431 184 514 3.18e-37 144
MS.gene30525.t1 AT3G48170 27.500 440 291 12 27 451 74 500 1.70e-34 135
MS.gene30525.t1 AT1G23800 27.397 438 293 14 13 438 101 525 1.04e-28 119
MS.gene30525.t1 AT3G48000 29.023 348 226 9 102 438 192 529 8.13e-27 114
MS.gene30525.t1 AT3G24503 27.011 348 233 12 102 438 155 492 2.27e-24 106
MS.gene30525.t1 AT2G24270 27.586 319 219 7 105 420 198 507 1.47e-22 101
MS.gene30525.t1 AT2G24270 27.003 337 234 7 105 438 158 485 2.49e-22 100
MS.gene30525.t1 AT2G24270 27.003 337 234 7 105 438 158 485 3.16e-22 100
MS.gene30525.t1 AT2G24270 27.003 337 234 7 105 438 158 485 3.16e-22 100
MS.gene30525.t1 AT1G54100 24.716 352 240 10 105 444 154 492 1.31e-18 89.0
MS.gene30525.t1 AT1G54100 24.716 352 240 10 105 444 154 492 1.31e-18 89.0
MS.gene30525.t1 AT1G23800 29.242 277 175 12 13 279 101 366 3.44e-13 71.6
MS.gene30525.t1 AT2G14170 23.059 438 299 12 26 440 58 480 1.07e-11 67.4
MS.gene30525.t1 AT2G14170 23.007 439 298 12 26 440 167 589 1.10e-11 67.8

Find 104 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTATAATTATGATTATT+TGG 0.060046 4.4:-41089558 MS.gene30525:CDS
ACACTTTAATGCGAGATTTA+AGG 0.163652 4.4:+41092155 None:intergenic
ATGGCCCTCATGCAAGATTT+AGG 0.175581 4.4:-41094733 MS.gene30525:CDS
GGATTGGTCCTTGTTATTCT+TGG 0.192443 4.4:-41089536 MS.gene30525:CDS
CGAATTCTTGTGGGAAAATA+TGG 0.202081 4.4:-41090675 MS.gene30525:CDS
CTTGGACAATAAAGCCATTA+AGG 0.225321 4.4:-41091598 MS.gene30525:CDS
TGGACTCACTTTCATCTTCT+TGG 0.243109 4.4:-41091163 MS.gene30525:CDS
TGGGACAAAATCTTCTTTAC+AGG 0.243473 4.4:-41091528 MS.gene30525:intron
TGGAGAGAATCACAACTAAA+AGG 0.259745 4.4:-41094796 MS.gene30525:CDS
GTTCAAGAATCTGTTGTTTA+TGG 0.261717 4.4:-41090366 MS.gene30525:CDS
ATGAAACTTACAGTAATAAT+TGG 0.278416 4.4:+41090158 None:intergenic
TGTTCCTCTCTACTTGCTTC+TGG 0.283578 4.4:-41091633 MS.gene30525:CDS
TTCATCTTCTTGGGATTTAG+AGG 0.286545 4.4:-41091153 MS.gene30525:intron
CCACCCAACTCCAGTGTTAC+AGG 0.297157 4.4:+41091203 None:intergenic
GGAGTAGGTGGAAGTGGATT+TGG 0.322807 4.4:-41089710 MS.gene30525:CDS
TCTTATAATTATGATTATTT+GGG 0.326416 4.4:-41089557 MS.gene30525:CDS
TGGCCCTCATGCAAGATTTA+GGG 0.327127 4.4:-41094732 MS.gene30525:CDS
TCATTCTGTTCTGCAATGTT+TGG 0.329437 4.4:+41089899 None:intergenic
GGACTCACTTTCATCTTCTT+GGG 0.344626 4.4:-41091162 MS.gene30525:CDS
ACATAAAGAGCAAGAGGTTT+AGG 0.345121 4.4:+41089934 None:intergenic
TTCTGGCATTGCCACTTACT+TGG 0.346310 4.4:-41091616 MS.gene30525:CDS
TCATCTTGGAATTTGCCCTT+TGG 0.381304 4.4:-41091950 MS.gene30525:intron
CTTGAAAGCAATGCTATTGC+AGG 0.388263 4.4:+41092016 None:intergenic
CATTAAAGTGTCTGAAAGAT+TGG 0.391877 4.4:-41092143 MS.gene30525:CDS
AAAGAGTTGCTGTTCAAAAC+TGG 0.409001 4.4:-41090604 MS.gene30525:intron
ATTTATTGAGCCAACAATCT+TGG 0.414711 4.4:-41090237 MS.gene30525:CDS
GCACCTGACCCCTGTAACAC+TGG 0.415048 4.4:-41091213 MS.gene30525:CDS
CTATAGTGTTGGAATGTTGT+GGG 0.417700 4.4:+41090448 None:intergenic
TATCAAAATAATGGGAACTT+TGG 0.423131 4.4:-41094881 None:intergenic
TAATTATGATTATTTGGGAT+TGG 0.431846 4.4:-41089552 MS.gene30525:CDS
TTGTCTTTGGAGCCACTGAT+AGG 0.437757 4.4:-41091711 MS.gene30525:CDS
GTGTGGATCAAGAAAATGTT+TGG 0.443390 4.4:-41090477 MS.gene30525:CDS
AGAAATTGTTCATGAGCCTC+TGG 0.445976 4.4:-41091990 MS.gene30525:CDS
TTAACTAACAAGGCAAGATC+TGG 0.446747 4.4:+41089492 None:intergenic
AAAAGAGAATGATATCTTCA+TGG 0.451423 4.4:-41094752 MS.gene30525:CDS
GGCTTTATTGTCCAAGTAAG+TGG 0.456241 4.4:+41091605 None:intergenic
TCGTTCTCATTATTTCATCT+TGG 0.461385 4.4:-41091964 MS.gene30525:CDS
ACCCCTGTAACACTGGAGTT+GGG 0.465154 4.4:-41091206 MS.gene30525:CDS
TTTGGTGGAGTAGGTGGAAG+TGG 0.473180 4.4:-41089716 MS.gene30525:CDS
TTATAAGGTGGAATTGATGA+AGG 0.484071 4.4:-41090499 MS.gene30525:intron
CACCCAACTCCAGTGTTACA+GGG 0.484632 4.4:+41091204 None:intergenic
GCTATAGTGTTGGAATGTTG+TGG 0.485996 4.4:+41090447 None:intergenic
GAAAGTGAGTCCACTACTGC+CGG 0.487924 4.4:+41091173 None:intergenic
AACTATCCTTGCTATAGTGT+TGG 0.490148 4.4:+41090437 None:intergenic
CAAGAATCTGTTGTTTATGG+TGG 0.492315 4.4:-41090363 MS.gene30525:CDS
ATGATATCTGAAACATCATC+TGG 0.495766 4.4:-41089880 MS.gene30525:CDS
ACAGTAATAATTGGAAGTAG+TGG 0.495808 4.4:+41090167 None:intergenic
TGGAAAATGCCCGGCAGTAG+TGG 0.497076 4.4:-41091183 MS.gene30525:CDS
ACTCCAGTGTTACAGGGGTC+AGG 0.499908 4.4:+41091210 None:intergenic
AGCAATGCTATTGCAGGTAG+TGG 0.500402 4.4:+41092022 None:intergenic
TGAAACTTATTTGCAGTCCA+TGG 0.501038 4.4:+41089593 None:intergenic
GGAGAGAATCACAACTAAAA+GGG 0.502833 4.4:-41094795 MS.gene30525:CDS
TATTGAGCCAACAATCTTGG+TGG 0.503945 4.4:-41090234 MS.gene30525:CDS
AGTCTACCATTTGGTGGAGT+AGG 0.504143 4.4:-41089725 MS.gene30525:CDS
GCAGCAGATAGTCTACCATT+TGG 0.506468 4.4:-41089734 MS.gene30525:CDS
ACATTATTGCTGCATCAAGT+GGG 0.515989 4.4:+41090207 None:intergenic
AACATTATTGCTGCATCAAG+TGG 0.523734 4.4:+41090206 None:intergenic
CTGATAGGAGCTATAGCTGC+TGG 0.523994 4.4:-41091696 MS.gene30525:CDS
GGAAAATATGGAACTTGTGC+TGG 0.526806 4.4:-41090663 MS.gene30525:CDS
GTGAAAACATAAAGAGCAAG+AGG 0.546456 4.4:+41089928 None:intergenic
TTTGCAGGTGGAGAAGATTG+AGG 0.547084 4.4:-41089983 MS.gene30525:intron
GGAGTTGGGTGGAAAATGCC+CGG 0.553278 4.4:-41091192 MS.gene30525:CDS
AAAGCCATTAAGGTTATCCA+AGG 0.556662 4.4:-41091588 MS.gene30525:CDS
CTACCATTTGGTGGAGTAGG+TGG 0.556973 4.4:-41089722 MS.gene30525:CDS
GGCTGTGAAGCGAATTCTTG+TGG 0.558485 4.4:-41090685 MS.gene30525:CDS
GTGGATTTGGCATGTACCAT+GGG 0.562857 4.4:-41089697 MS.gene30525:CDS
GCAGATAGTCTACCATTTGG+TGG 0.563379 4.4:-41089731 MS.gene30525:CDS
CTTCCACCTACTCCACCAAA+TGG 0.564341 4.4:+41089719 None:intergenic
GACCCCTGTAACACTGGAGT+TGG 0.566126 4.4:-41091207 MS.gene30525:CDS
AAATAAGTTTCAACTACTTG+AGG 0.566706 4.4:-41089582 MS.gene30525:CDS
GTATTGAATTCATAAGCTCT+AGG 0.568775 4.4:-41089957 MS.gene30525:CDS
CAGTAATAATTGGAAGTAGT+GGG 0.569529 4.4:+41090168 None:intergenic
GCAAGTAGAGAGGAACATGC+AGG 0.574415 4.4:+41091639 None:intergenic
GTTTCCCTAAATCTTGCATG+AGG 0.582440 4.4:+41094728 None:intergenic
TTGGTGACTGAATGTGTCAA+AGG 0.587692 4.4:+41089667 None:intergenic
GCTGTGAAGCGAATTCTTGT+GGG 0.591682 4.4:-41090684 MS.gene30525:CDS
AGATTGGATGTCAAGCAAGA+AGG 0.596883 4.4:-41092127 MS.gene30525:intron
AATATCAGGTAGTGCACGAG+TGG 0.599899 4.4:-41091264 MS.gene30525:intron
CATTATTGCTGCATCAAGTG+GGG 0.601518 4.4:+41090208 None:intergenic
AGGGTTGCGTCGTTTCCTAG+TGG 0.601929 4.4:-41094776 MS.gene30525:CDS
GAAATTGTTCATGAGCCTCT+GGG 0.609785 4.4:-41091989 MS.gene30525:CDS
AAGCCATTAAGGTTATCCAA+GGG 0.614555 4.4:-41091587 MS.gene30525:CDS
AGGTGGAATTGATGAAGGTG+TGG 0.618298 4.4:-41090494 MS.gene30525:CDS
CACCCGCTAATTAACTAACA+AGG 0.618800 4.4:+41089482 None:intergenic
AAAGTGAGTCCACTACTGCC+GGG 0.620454 4.4:+41091174 None:intergenic
CCTGTAACACTGGAGTTGGG+TGG 0.622351 4.4:-41091203 MS.gene30525:CDS
ATATCAGGTAGTGCACGAGT+GGG 0.622510 4.4:-41091263 MS.gene30525:intron
AACATTCCAACACTATAGCA+AGG 0.624404 4.4:-41090443 MS.gene30525:CDS
AACTTATTTGCAGTCCATGG+TGG 0.626124 4.4:+41089596 None:intergenic
AATAATTGGTCGGATTCCTG+TGG 0.634417 4.4:+41091561 None:intergenic
GCAGCTATAGCTCCTATCAG+TGG 0.636960 4.4:+41091699 None:intergenic
AGTGGATTTGGCATGTACCA+TGG 0.640616 4.4:-41089698 MS.gene30525:CDS
TTTCCCTAAATCTTGCATGA+GGG 0.641569 4.4:+41094729 None:intergenic
CATGCAGGAGACAACTCTGA+AGG 0.651380 4.4:+41091654 None:intergenic
ATTATTGCTGCATCAAGTGG+GGG 0.663599 4.4:+41090209 None:intergenic
AATGCCAGAAGCAAGTAGAG+AGG 0.669071 4.4:+41091629 None:intergenic
TTTGGTATAGATATCCACCA+TGG 0.672421 4.4:-41089610 MS.gene30525:CDS
TATCAGGTAGTGCACGAGTG+GGG 0.672922 4.4:-41091262 MS.gene30525:intron
ACCCAACTCCAGTGTTACAG+GGG 0.674549 4.4:+41091205 None:intergenic
GCCATTAAGGTTATCCAAGG+GGG 0.676497 4.4:-41091585 MS.gene30525:CDS
AGCCATTAAGGTTATCCAAG+GGG 0.684321 4.4:-41091586 MS.gene30525:CDS
TCTTTAATCCAAGAATAACA+AGG 0.695515 4.4:+41089528 None:intergenic
TGTCAAAGGAGAATTTCCCA+TGG 0.698053 4.4:+41089681 None:intergenic
ATAATGAGAACGACACCCAG+AGG 0.731880 4.4:+41091974 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATTTAGTAATAAATGT+TGG - chr4.4:41091627-41091646 MS.gene30525:CDS 10.0%
!! TCTTATAATTATGATTATTT+GGG - chr4.4:41094810-41094829 MS.gene30525:CDS 10.0%
!!! AAAGTTAAATCATTTTTTTA+AGG - chr4.4:41091169-41091188 MS.gene30525:CDS 10.0%
!!! AATTTATTTATTTTTTGGTA+AGG - chr4.4:41089759-41089778 MS.gene30525:intron 10.0%
!!! TTTGTATTAAAGTTTTTTTT+TGG - chr4.4:41090517-41090536 MS.gene30525:intron 10.0%
!!! TTTTATTTTATTTTATAAGG+TGG - chr4.4:41093856-41093875 MS.gene30525:intron 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4.4:41090938-41090957 None:intergenic 100.0%
!! AAATAAGATATATAACAACA+TGG - chr4.4:41089850-41089869 MS.gene30525:CDS 15.0%
!! AATAAATTAGAGATAAACAA+AGG + chr4.4:41090332-41090351 None:intergenic 15.0%
!! ATTTGAACATTAATATAAAG+TGG + chr4.4:41094576-41094595 None:intergenic 15.0%
!! CAAAAAATAAATAAATTCCT+TGG + chr4.4:41089756-41089775 None:intergenic 15.0%
!! CTCTTATAATTATGATTATT+TGG - chr4.4:41094809-41094828 MS.gene30525:CDS 15.0%
!! GAAATAATTTACTTTGATAT+AGG - chr4.4:41092320-41092339 MS.gene30525:intron 15.0%
!! TAAAATTTAAACATCACAAA+TGG + chr4.4:41090747-41090766 None:intergenic 15.0%
!! TATGCAAAAGATAAAATAAA+GGG + chr4.4:41094360-41094379 None:intergenic 15.0%
!! TTATGCAAAAGATAAAATAA+AGG + chr4.4:41094361-41094380 None:intergenic 15.0%
!! TTATTGTAAAAACTAATATC+AGG - chr4.4:41093089-41093108 MS.gene30525:intron 15.0%
!!! ATCATTTCTCAAATTTTATT+TGG + chr4.4:41090884-41090903 None:intergenic 15.0%
!!! ATGGATATCTTTTTTTATAT+AGG + chr4.4:41089880-41089899 None:intergenic 15.0%
!!! CAAGGAATTTATTTATTTTT+TGG - chr4.4:41089754-41089773 MS.gene30525:intron 15.0%
!!! GAAAAGTTAAATCATTTTTA+AGG - chr4.4:41091543-41091562 MS.gene30525:CDS 15.0%
!!! TATTTTTCTTAACTTTTTCA+TGG + chr4.4:41090064-41090083 None:intergenic 15.0%
!!! TCATTTCTCAAATTTTATTT+GGG + chr4.4:41090883-41090902 None:intergenic 15.0%
!!! TTTTATTAATGGTTACTTTA+TGG + chr4.4:41089899-41089918 None:intergenic 15.0%
!! AATAAATAAATTCCTTGGAT+TGG + chr4.4:41089751-41089770 None:intergenic 20.0%
!! AGAATAACGAAAAAAATTAG+AGG + chr4.4:41092572-41092591 None:intergenic 20.0%
!! AGAGAATAAAACACTATTTA+AGG - chr4.4:41089939-41089958 MS.gene30525:CDS 20.0%
!! ATGAAACTTACAGTAATAAT+TGG + chr4.4:41094212-41094231 None:intergenic 20.0%
!! ATTATCAATGTAACAATTTC+TGG - chr4.4:41093647-41093666 MS.gene30525:intron 20.0%
!! ATTCAATTACTAGAAAAAGT+TGG - chr4.4:41092491-41092510 MS.gene30525:intron 20.0%
!! ATTCATTTGATAGAGTATAT+CGG - chr4.4:41091735-41091754 MS.gene30525:intron 20.0%
!! ATTGATCCATATAGATTATA+TGG + chr4.4:41089978-41089997 None:intergenic 20.0%
!! CATCTATTACCTTAATTTAT+CGG - chr4.4:41093538-41093557 MS.gene30525:intron 20.0%
!! GTAAATTATTTCGTTATTAG+TGG + chr4.4:41092312-41092331 None:intergenic 20.0%
!! GTATATCTCCTAAAAATAAA+CGG - chr4.4:41091135-41091154 MS.gene30525:intron 20.0%
!! TAAAAATAAACGGAATTTAG+AGG - chr4.4:41091521-41091540 MS.gene30525:intron 20.0%
!! TAAAAATAAACGGTATTTAG+TGG - chr4.4:41091145-41091164 MS.gene30525:intron 20.0%
!! TATATAATTAACTCACCAAA+GGG + chr4.4:41092435-41092454 None:intergenic 20.0%
!!! ACTAAATACCGTTTATTTTT+AGG + chr4.4:41091146-41091165 None:intergenic 20.0%
!!! AGAATATGAGAGAATATTTT+AGG - chr4.4:41089524-41089543 MS.gene30525:CDS 20.0%
!!! ATAATGTTAGATGAAGTTTT+TGG - chr4.4:41094176-41094195 MS.gene30525:intron 20.0%
!!! ATTTTTTTCACTCTTCTTAT+TGG + chr4.4:41090983-41091002 None:intergenic 20.0%
!!! CATTTCTCAAATTTTATTTG+GGG + chr4.4:41090882-41090901 None:intergenic 20.0%
!!! GTGATGTTTAAATTTTATCT+AGG - chr4.4:41090750-41090769 MS.gene30525:intron 20.0%
!!! TAATTATGATTATTTGGGAT+TGG - chr4.4:41094815-41094834 MS.gene30525:CDS 20.0%
!!! TATGCTTTTACATTTTTTGT+AGG + chr4.4:41091686-41091705 None:intergenic 20.0%
!!! TCTAAATTCCGTTTATTTTT+AGG + chr4.4:41091522-41091541 None:intergenic 20.0%
!!! TCTACTATAATTGTTTTGTT+TGG + chr4.4:41091073-41091092 None:intergenic 20.0%
!!! TTCTTTTATCCGATAAATTA+AGG + chr4.4:41093550-41093569 None:intergenic 20.0%
!!! TTGATATATTCGATCTTTTT+TGG + chr4.4:41091838-41091857 None:intergenic 20.0%
! AAAAGAGAATGATATCTTCA+TGG - chr4.4:41089615-41089634 MS.gene30525:CDS 25.0%
! AAAAGATAGATATAAGCATG+TGG + chr4.4:41094323-41094342 None:intergenic 25.0%
! AAATAAGTTTCAACTACTTG+AGG - chr4.4:41094785-41094804 MS.gene30525:CDS 25.0%
! AAATATATAGTAAAACCCGA+TGG + chr4.4:41093416-41093435 None:intergenic 25.0%
! AACGACAAAATACATATATC+CGG - chr4.4:41091932-41091951 MS.gene30525:intron 25.0%
! ACAAAACTATCTAGTTAGTT+AGG - chr4.4:41089827-41089846 MS.gene30525:intron 25.0%
! ACCAATTATTACAGCAAAAA+TGG - chr4.4:41092819-41092838 MS.gene30525:intron 25.0%
! ACTTAATCAAATGTAACTTG+TGG + chr4.4:41093615-41093634 None:intergenic 25.0%
! AGTGTTCCATATAATCTATA+TGG - chr4.4:41089969-41089988 MS.gene30525:CDS 25.0%
! ATAACGAAAAAAATTAGAGG+CGG + chr4.4:41092569-41092588 None:intergenic 25.0%
! ATAGAGAATCAAATAGAAGA+AGG + chr4.4:41093510-41093529 None:intergenic 25.0%
! CAAGTTACATTTGATTAAGT+TGG - chr4.4:41093615-41093634 MS.gene30525:intron 25.0%
! CCAATTATTACAGCAAAAAT+GGG - chr4.4:41092820-41092839 MS.gene30525:intron 25.0%
! GAGAGAGATTGTAAAAAAAA+TGG + chr4.4:41090917-41090936 None:intergenic 25.0%
! GTATATAATTAACTCACCAA+AGG + chr4.4:41092436-41092455 None:intergenic 25.0%
! TACTAACTTAGAAACCTAAA+AGG + chr4.4:41093386-41093405 None:intergenic 25.0%
! TAGGAATATTAGTATGTGAA+AGG + chr4.4:41094066-41094085 None:intergenic 25.0%
! TATATATGGTTTATAGCATG+AGG + chr4.4:41091047-41091066 None:intergenic 25.0%
! TATCGGATAAAAGAAAACAA+CGG - chr4.4:41093555-41093574 MS.gene30525:intron 25.0%
! TCTTTAATCCAAGAATAACA+AGG + chr4.4:41094842-41094861 None:intergenic 25.0%
! TGGACAAAAAAAATAGAGAT+GGG + chr4.4:41090963-41090982 None:intergenic 25.0%
! TGTAACCAATAAAAAAACAC+AGG - chr4.4:41092632-41092651 MS.gene30525:intron 25.0%
! TGTTAGAGTCTTCATAAATT+TGG - chr4.4:41092591-41092610 MS.gene30525:intron 25.0%
! TTGGACAAAAAAAATAGAGA+TGG + chr4.4:41090964-41090983 None:intergenic 25.0%
!! ATGACTATTTTACAAATGTC+TGG - chr4.4:41094251-41094270 MS.gene30525:intron 25.0%
!! CTTAATCAAATGTAACTTGT+GGG + chr4.4:41093614-41093633 None:intergenic 25.0%
!! TATTTTACAAATGTCTGGTA+TGG - chr4.4:41094256-41094275 MS.gene30525:intron 25.0%
!!! AACAATTTCTGGTGATTATA+AGG - chr4.4:41093658-41093677 MS.gene30525:intron 25.0%
!!! ACAATCCTGTGTTTTTTTAT+TGG + chr4.4:41092640-41092659 None:intergenic 25.0%
!!! GAAGTTTCTTAACTGATTTT+TGG - chr4.4:41094739-41094758 MS.gene30525:CDS 25.0%
!!! GTTTTATTCTCTATAGATGA+AGG + chr4.4:41089931-41089950 None:intergenic 25.0%
!!! GTTTTGTTTGGTTGTATATA+TGG + chr4.4:41091061-41091080 None:intergenic 25.0%
!!! TCTACTAAAATCGTTTTGTT+TGG + chr4.4:41091417-41091436 None:intergenic 25.0%
!!! TCTTTTGCATAATAATTTGC+AGG - chr4.4:41094369-41094388 MS.gene30525:intron 25.0%
!!! TGTCGCTTTAACAAAAATAA+TGG + chr4.4:41090124-41090143 None:intergenic 25.0%
!!! TTCTTCTAACAATTGCTTTT+TGG + chr4.4:41094722-41094741 None:intergenic 25.0%
!!! TTTTTGCTGTAATAATTGGT+CGG + chr4.4:41092819-41092838 None:intergenic 25.0%
!!! TTTTTTGGTGATAGGAATTT+AGG + chr4.4:41094085-41094104 None:intergenic 25.0%
AAAAAACACAGGATTGTCTT+TGG - chr4.4:41092643-41092662 MS.gene30525:intron 30.0%
AAGTGGCGATGAAAAATATT+TGG + chr4.4:41092875-41092894 None:intergenic 30.0%
AATATTAGTATGTGAAAGGC+AGG + chr4.4:41094062-41094081 None:intergenic 30.0%
AATTAAGACACAGACTTGAT+TGG + chr4.4:41090147-41090166 None:intergenic 30.0%
ACAAAAAAAATAGAGATGGG+GGG + chr4.4:41090960-41090979 None:intergenic 30.0%
ACACATATATATGGTTCATG+AGG - chr4.4:41089804-41089823 MS.gene30525:intron 30.0%
ACACTTTAATGCGAGATTTA+AGG + chr4.4:41092215-41092234 None:intergenic 30.0%
ACAGTAATAATTGGAAGTAG+TGG + chr4.4:41094203-41094222 None:intergenic 30.0%
ACTAGAAAAAGTTGGAACAA+CGG - chr4.4:41092499-41092518 MS.gene30525:intron 30.0%
AGAGGCGGAAAAAATAAATT+TGG + chr4.4:41092554-41092573 None:intergenic 30.0%
AGTGGCGATGAAAAATATTT+GGG + chr4.4:41092874-41092893 None:intergenic 30.0%
ATATTAGTATGTGAAAGGCA+GGG + chr4.4:41094061-41094080 None:intergenic 30.0%
ATCTGCTCAAAATCTAAAAG+TGG + chr4.4:41092892-41092911 None:intergenic 30.0%
ATTTATTGAGCCAACAATCT+TGG - chr4.4:41094130-41094149 MS.gene30525:intron 30.0%
ATTTGATAGAGTATATCGGT+AGG - chr4.4:41091739-41091758 MS.gene30525:intron 30.0%
CAAGTCTGTGTCTTAATTTA+AGG - chr4.4:41090149-41090168 MS.gene30525:intron 30.0%
CAGTAATAATTGGAAGTAGT+GGG + chr4.4:41094202-41094221 None:intergenic 30.0%
CATTTACACGAGAATAGTTA+GGG - chr4.4:41090276-41090295 MS.gene30525:intron 30.0%
GAACCATATATATGTGTGTA+CGG + chr4.4:41089801-41089820 None:intergenic 30.0%
GAATAACACAACAACAGTAA+CGG + chr4.4:41093488-41093507 None:intergenic 30.0%
GACAAAAAAAATAGAGATGG+GGG + chr4.4:41090961-41090980 None:intergenic 30.0%
GGACAAAAAAAATAGAGATG+GGG + chr4.4:41090962-41090981 None:intergenic 30.0%
GTATTGAATTCATAAGCTCT+AGG - chr4.4:41094410-41094429 MS.gene30525:intron 30.0%
TACTAAATCCATTCACAGAT+AGG - chr4.4:41092175-41092194 MS.gene30525:CDS 30.0%
TATGGATCAATGCTTGAAAA+TGG - chr4.4:41089987-41090006 MS.gene30525:intron 30.0%
TCGTTCTCATTATTTCATCT+TGG - chr4.4:41092403-41092422 MS.gene30525:intron 30.0%
TTATAAGGTGGAATTGATGA+AGG - chr4.4:41093868-41093887 MS.gene30525:intron 30.0%
TTATGAAGCAGTGCAAATTA+TGG - chr4.4:41093002-41093021 MS.gene30525:intron 30.0%
! ATGATATCTGAAACATCATC+TGG - chr4.4:41094487-41094506 MS.gene30525:intron 30.0%
! CAACCAAACAAAACGATTTT+AGG - chr4.4:41091239-41091258 MS.gene30525:CDS 30.0%
! CAGATTTTAAATTGCAGTCA+CGG - chr4.4:41092907-41092926 MS.gene30525:intron 30.0%
! CATTAAAGTGTCTGAAAGAT+TGG - chr4.4:41092224-41092243 MS.gene30525:intron 30.0%
! GGTGCACAACTTTTTATTAA+TGG + chr4.4:41089910-41089929 None:intergenic 30.0%
! GTCTAAAGCAATGATTATTC+CGG + chr4.4:41091954-41091973 None:intergenic 30.0%
! GTTCAAGAATCTGTTGTTTA+TGG - chr4.4:41094001-41094020 MS.gene30525:intron 30.0%
! TAGACATATTTTCCAATCCA+AGG - chr4.4:41089736-41089755 MS.gene30525:CDS 30.0%
! TATCATTCTCTTTTTCCACT+AGG + chr4.4:41089609-41089628 None:intergenic 30.0%
! TTTGCATAATAATTTGCAGG+TGG - chr4.4:41094372-41094391 MS.gene30525:intron 30.0%
!! AATTTCTGGTGATTATAAGG+TGG - chr4.4:41093661-41093680 MS.gene30525:intron 30.0%
!! ATGAGAGAATATTTTAGGAG+TGG - chr4.4:41089529-41089548 MS.gene30525:CDS 30.0%
!! CATAACCAGGCTTTAAATAA+AGG + chr4.4:41093035-41093054 None:intergenic 30.0%
!! CCCATTTTTGCTGTAATAAT+TGG + chr4.4:41092823-41092842 None:intergenic 30.0%
!! GAAAAACAAAAGAAGCATCT+TGG - chr4.4:41089551-41089570 MS.gene30525:CDS 30.0%
!! TCTCCTAAAATCGTTTTGTT+TGG + chr4.4:41091245-41091264 None:intergenic 30.0%
!!! AATCGTTTTGTTTGGTTGTA+TGG + chr4.4:41091237-41091256 None:intergenic 30.0%
!!! CATGTTGTTTTTTTGGTGAT+AGG + chr4.4:41094093-41094112 None:intergenic 30.0%
!!! GTGACATTCATGTTTTAATG+TGG - chr4.4:41092935-41092954 MS.gene30525:intron 30.0%
!!! TTGAGCACATGTTGTTTTTT+TGG + chr4.4:41094100-41094119 None:intergenic 30.0%
AAAAAAAATAGAGATGGGGG+GGG + chr4.4:41090958-41090977 None:intergenic 35.0%
AAAGCCATTAAGGTTATCCA+AGG - chr4.4:41092779-41092798 MS.gene30525:intron 35.0%
AACAACGGTAACAAACTTGT+TGG - chr4.4:41093570-41093589 MS.gene30525:intron 35.0%
AACATTATTGCTGCATCAAG+TGG + chr4.4:41094164-41094183 None:intergenic 35.0%
AACATTCCAACACTATAGCA+AGG - chr4.4:41093924-41093943 MS.gene30525:intron 35.0%
AAGCCATTAAGGTTATCCAA+GGG - chr4.4:41092780-41092799 MS.gene30525:intron 35.0%
AAGTTAGTAGTCTAGTCCAT+CGG - chr4.4:41093397-41093416 MS.gene30525:intron 35.0%
ACAACGGCATGACATAATAA+AGG + chr4.4:41093447-41093466 None:intergenic 35.0%
ACATAAAGAGCAAGAGGTTT+AGG + chr4.4:41094436-41094455 None:intergenic 35.0%
ACATTATTGCTGCATCAAGT+GGG + chr4.4:41094163-41094182 None:intergenic 35.0%
ACTAGATCGAAGTGATCTAA+CGG - chr4.4:41092014-41092033 MS.gene30525:CDS 35.0%
AGGGCTTCATAAGATTACAA+CGG + chr4.4:41093463-41093482 None:intergenic 35.0%
ATATGTGTGTACGGATCATT+TGG + chr4.4:41089792-41089811 None:intergenic 35.0%
ATCGAACAAACACCGTTATA+AGG - chr4.4:41092074-41092093 MS.gene30525:intron 35.0%
CAAAAAAAATAGAGATGGGG+GGG + chr4.4:41090959-41090978 None:intergenic 35.0%
CAACGGCAAAAATTTAGAGA+CGG - chr4.4:41092516-41092535 MS.gene30525:intron 35.0%
CGAATTCTTGTGGGAAAATA+TGG - chr4.4:41093692-41093711 MS.gene30525:intron 35.0%
CTTGGACAATAAAGCCATTA+AGG - chr4.4:41092769-41092788 MS.gene30525:intron 35.0%
GACCTATGAATTGAACTTGT+CGG - chr4.4:41090183-41090202 MS.gene30525:CDS 35.0%
GATCCGTACACACATATATA+TGG - chr4.4:41089795-41089814 MS.gene30525:intron 35.0%
GCATTTACACGAGAATAGTT+AGG - chr4.4:41090275-41090294 MS.gene30525:intron 35.0%
GGAGAGAATCACAACTAAAA+GGG - chr4.4:41089572-41089591 MS.gene30525:CDS 35.0%
GTGAAAACATAAAGAGCAAG+AGG + chr4.4:41094442-41094461 None:intergenic 35.0%
GTGAATAAGTGGAGAATCTT+AGG + chr4.4:41091779-41091798 None:intergenic 35.0%
GTGCATTAACATGTGTGAAA+TGG + chr4.4:41090389-41090408 None:intergenic 35.0%
GTGTGGATCAAGAAAATGTT+TGG - chr4.4:41093890-41093909 MS.gene30525:intron 35.0%
GTTTGTCAAGCAAAGTTATG+CGG + chr4.4:41090303-41090322 None:intergenic 35.0%
TACCTCTAAACGTGAATAAG+TGG + chr4.4:41091790-41091809 None:intergenic 35.0%
TAGAGATAAACAAAGGCCAA+GGG + chr4.4:41090325-41090344 None:intergenic 35.0%
TCATTCTGTTCTGCAATGTT+TGG + chr4.4:41094471-41094490 None:intergenic 35.0%
TGAAACTTATTTGCAGTCCA+TGG + chr4.4:41094777-41094796 None:intergenic 35.0%
TGGAGAGAATCACAACTAAA+AGG - chr4.4:41089571-41089590 MS.gene30525:CDS 35.0%
TGGGACAAAATCTTCTTTAC+AGG - chr4.4:41092839-41092858 MS.gene30525:intron 35.0%
TTAAATTGCAGTCACGGTAA+CGG - chr4.4:41092913-41092932 MS.gene30525:intron 35.0%
TTAGAGATAAACAAAGGCCA+AGG + chr4.4:41090326-41090345 None:intergenic 35.0%
TTCATCTTCTTGGGATTTAG+AGG - chr4.4:41093214-41093233 MS.gene30525:intron 35.0%
TTTCCCTAAATCTTGCATGA+GGG + chr4.4:41089641-41089660 None:intergenic 35.0%
TTTGGTATAGATATCCACCA+TGG - chr4.4:41094757-41094776 MS.gene30525:CDS 35.0%
TTTGTCAAGCAAAGTTATGC+GGG + chr4.4:41090302-41090321 None:intergenic 35.0%
! AAAGAGTTGCTGTTCAAAAC+TGG - chr4.4:41093763-41093782 MS.gene30525:intron 35.0%
! AACTATCCTTGCTATAGTGT+TGG + chr4.4:41093933-41093952 None:intergenic 35.0%
! AATGAGCTTTTACTTGAACG+TGG + chr4.4:41090034-41090053 None:intergenic 35.0%
! CAAGAATCTGTTGTTTATGG+TGG - chr4.4:41094004-41094023 MS.gene30525:intron 35.0%
! CTATAGTGTTGGAATGTTGT+GGG + chr4.4:41093922-41093941 None:intergenic 35.0%
! TTTTTGTAGGATCGCTTCAA+TGG + chr4.4:41091673-41091692 None:intergenic 35.0%
!! AAATTTTATTTGGGGAGACG+AGG + chr4.4:41090874-41090893 None:intergenic 35.0%
!! TTTGCTTTTCCGCCTTATAA+CGG + chr4.4:41092089-41092108 None:intergenic 35.0%
!!! GTTCTGCAATGTTTGGTTTT+TGG + chr4.4:41094464-41094483 None:intergenic 35.0%
AAAAAAATAGAGATGGGGGG+GGG + chr4.4:41090957-41090976 None:intergenic 40.0%
AACTTATTTGCAGTCCATGG+TGG + chr4.4:41094774-41094793 None:intergenic 40.0%
AACTTTGCTTGACAAACCCT+TGG - chr4.4:41090306-41090325 MS.gene30525:intron 40.0%
AATAATTGGTCGGATTCCTG+TGG + chr4.4:41092809-41092828 None:intergenic 40.0%
ACTTCGATCTAGTGCAGATT+CGG + chr4.4:41092007-41092026 None:intergenic 40.0%
AGAAATTGTTCATGAGCCTC+TGG - chr4.4:41092377-41092396 MS.gene30525:intron 40.0%
AGAGTATATCGGTAGGAGTT+GGG - chr4.4:41091746-41091765 MS.gene30525:intron 40.0%
AGATTGGATGTCAAGCAAGA+AGG - chr4.4:41092240-41092259 MS.gene30525:intron 40.0%
AGCCATTAAGGTTATCCAAG+GGG - chr4.4:41092781-41092800 MS.gene30525:intron 40.0%
AGTTAGTAGTCTAGTCCATC+GGG - chr4.4:41093398-41093417 MS.gene30525:intron 40.0%
ATATTGCCAAAACTACAGCG+CGG + chr4.4:41092973-41092992 None:intergenic 40.0%
ATTATTGCTGCATCAAGTGG+GGG + chr4.4:41094161-41094180 None:intergenic 40.0%
CACTAAATGACTCAGAAGTG+TGG - chr4.4:41090645-41090664 MS.gene30525:CDS 40.0%
CATTATTGCTGCATCAAGTG+GGG + chr4.4:41094162-41094181 None:intergenic 40.0%
CGAGCGTGTTATCAAGAATT+GGG + chr4.4:41093277-41093296 None:intergenic 40.0%
CGAGGTGGATAGTATGATAT+TGG + chr4.4:41090856-41090875 None:intergenic 40.0%
CTAACGTTCCTATCTGTGAA+TGG + chr4.4:41092186-41092205 None:intergenic 40.0%
CTCCACTTATTCACGTTTAG+AGG - chr4.4:41091785-41091804 MS.gene30525:intron 40.0%
CTTGAAAGCAATGCTATTGC+AGG + chr4.4:41092354-41092373 None:intergenic 40.0%
GAAATTGTTCATGAGCCTCT+GGG - chr4.4:41092378-41092397 MS.gene30525:intron 40.0%
GAACAAACACCGTTATAAGG+CGG - chr4.4:41092077-41092096 MS.gene30525:intron 40.0%
GACCGACAAGTTCAATTCAT+AGG + chr4.4:41090188-41090207 None:intergenic 40.0%
GGAAAATATGGAACTTGTGC+TGG - chr4.4:41093704-41093723 MS.gene30525:intron 40.0%
GGACTCACTTTCATCTTCTT+GGG - chr4.4:41093205-41093224 MS.gene30525:intron 40.0%
GGTGGATAGTATGATATTGG+TGG + chr4.4:41090853-41090872 None:intergenic 40.0%
GTTTCCCTAAATCTTGCATG+AGG + chr4.4:41089642-41089661 None:intergenic 40.0%
TAGAGTATATCGGTAGGAGT+TGG - chr4.4:41091745-41091764 MS.gene30525:intron 40.0%
TATTGAGCCAACAATCTTGG+TGG - chr4.4:41094133-41094152 MS.gene30525:intron 40.0%
TCATCTTGGAATTTGCCCTT+TGG - chr4.4:41092417-41092436 MS.gene30525:intron 40.0%
TCGAGCGTGTTATCAAGAAT+TGG + chr4.4:41093278-41093297 None:intergenic 40.0%
TGGACTCACTTTCATCTTCT+TGG - chr4.4:41093204-41093223 MS.gene30525:intron 40.0%
TGTCAAAGGAGAATTTCCCA+TGG + chr4.4:41094689-41094708 None:intergenic 40.0%
! CAGAAGTGTGGTGCTTAAAT+CGG - chr4.4:41090657-41090676 MS.gene30525:CDS 40.0%
! GCTATAGTGTTGGAATGTTG+TGG + chr4.4:41093923-41093942 None:intergenic 40.0%
! GCTCTATTGTTGTGCCTTTT+AGG - chr4.4:41093369-41093388 MS.gene30525:intron 40.0%
! TTGGTGACTGAATGTGTCAA+AGG + chr4.4:41094703-41094722 None:intergenic 40.0%
!! AGGCTTTAAATAAAGGTCCG+CGG + chr4.4:41093028-41093047 None:intergenic 40.0%
!! GGATTGGTCCTTGTTATTCT+TGG - chr4.4:41094831-41094850 MS.gene30525:CDS 40.0%
!! GGCTTTATTGTCCAAGTAAG+TGG + chr4.4:41092765-41092784 None:intergenic 40.0%
!! TCTTGAAGCTTTTAGAGACG+AGG - chr4.4:41089666-41089685 MS.gene30525:CDS 40.0%
AAAAAATAGAGATGGGGGGG+GGG + chr4.4:41090956-41090975 None:intergenic 45.0%
AATATCAGGTAGTGCACGAG+TGG - chr4.4:41093103-41093122 MS.gene30525:intron 45.0%
AATGCCAGAAGCAAGTAGAG+AGG + chr4.4:41092741-41092760 None:intergenic 45.0%
ACACAACAACAGTAACGGCT+AGG + chr4.4:41093483-41093502 None:intergenic 45.0%
AGCAATGCTATTGCAGGTAG+TGG + chr4.4:41092348-41092367 None:intergenic 45.0%
AGGTGGAATTGATGAAGGTG+TGG - chr4.4:41093873-41093892 MS.gene30525:intron 45.0%
ATAATGAGAACGACACCCAG+AGG + chr4.4:41092396-41092415 None:intergenic 45.0%
ATATCAGGTAGTGCACGAGT+GGG - chr4.4:41093104-41093123 MS.gene30525:intron 45.0%
ATGGCCCTCATGCAAGATTT+AGG - chr4.4:41089634-41089653 MS.gene30525:CDS 45.0%
CACAACAACAGTAACGGCTA+GGG + chr4.4:41093482-41093501 None:intergenic 45.0%
GAGTATATCGGTAGGAGTTG+GGG - chr4.4:41091747-41091766 MS.gene30525:intron 45.0%
GCAGATAGTCTACCATTTGG+TGG - chr4.4:41094636-41094655 MS.gene30525:intron 45.0%
GCAGCAGATAGTCTACCATT+TGG - chr4.4:41094633-41094652 MS.gene30525:intron 45.0%
GCCATTAAGGTTATCCAAGG+GGG - chr4.4:41092782-41092801 MS.gene30525:intron 45.0%
GCTGTGAAGCGAATTCTTGT+GGG - chr4.4:41093683-41093702 MS.gene30525:intron 45.0%
GTGACAAGAGACTCATAACC+AGG + chr4.4:41093048-41093067 None:intergenic 45.0%
GTGGATTTGGCATGTACCAT+GGG - chr4.4:41094670-41094689 MS.gene30525:intron 45.0%
TCCCCCTTGGATAACCTTAA+TGG + chr4.4:41092786-41092805 None:intergenic 45.0%
TGGCCCTCATGCAAGATTTA+GGG - chr4.4:41089635-41089654 MS.gene30525:CDS 45.0%
TGTTCCTCTCTACTTGCTTC+TGG - chr4.4:41092734-41092753 MS.gene30525:intron 45.0%
TTTGCAGGTGGAGAAGATTG+AGG - chr4.4:41094384-41094403 MS.gene30525:intron 45.0%
! AGTCTACCATTTGGTGGAGT+AGG - chr4.4:41094642-41094661 MS.gene30525:intron 45.0%
! AGTGGATTTGGCATGTACCA+TGG - chr4.4:41094669-41094688 MS.gene30525:intron 45.0%
! GCGGACCTTTATTTAAAGCC+TGG - chr4.4:41093027-41093046 MS.gene30525:intron 45.0%
! TCGGCGCTTCAAGATTTGTT+AGG - chr4.4:41090676-41090695 MS.gene30525:CDS 45.0%
! TGTGCAAGAGCATACACTTC+AGG - chr4.4:41093309-41093328 MS.gene30525:intron 45.0%
! TTCTGGCATTGCCACTTACT+TGG - chr4.4:41092751-41092770 MS.gene30525:intron 45.0%
! TTTTGTTCGTCGTTGTGCAG+TGG + chr4.4:41092118-41092137 None:intergenic 45.0%
!! TTGTCTTTGGAGCCACTGAT+AGG - chr4.4:41092656-41092675 MS.gene30525:intron 45.0%
!! TTTTATTTGGGGAGACGAGG+TGG + chr4.4:41090871-41090890 None:intergenic 45.0%
!!! AAAGTTAAATAATTTTTTTA+AGG - chr4.4:41091341-41091360 MS.gene30525:intron 5.0%
!!! TTGTTTTATTTTATTTTATA+AGG - chr4.4:41093853-41093872 MS.gene30525:intron 5.0%
AAAAATAGAGATGGGGGGGG+GGG + chr4.4:41090955-41090974 None:intergenic 50.0%
AAAGTGAGTCCACTACTGCC+GGG + chr4.4:41093196-41093215 None:intergenic 50.0%
ACCCAACTCCAGTGTTACAG+GGG + chr4.4:41093165-41093184 None:intergenic 50.0%
ACCCCTGTAACACTGGAGTT+GGG - chr4.4:41093161-41093180 MS.gene30525:intron 50.0%
AGCAGTGCAAATTATGGCCG+CGG - chr4.4:41093008-41093027 MS.gene30525:intron 50.0%
CACCCAACTCCAGTGTTACA+GGG + chr4.4:41093166-41093185 None:intergenic 50.0%
CATGCAGGAGACAACTCTGA+AGG + chr4.4:41092716-41092735 None:intergenic 50.0%
CTGATAGGAGCTATAGCTGC+TGG - chr4.4:41092671-41092690 MS.gene30525:intron 50.0%
CTTCCACCTACTCCACCAAA+TGG + chr4.4:41094651-41094670 None:intergenic 50.0%
GAAAGTGAGTCCACTACTGC+CGG + chr4.4:41093197-41093216 None:intergenic 50.0%
GCAAGTAGAGAGGAACATGC+AGG + chr4.4:41092731-41092750 None:intergenic 50.0%
GCAGCTATAGCTCCTATCAG+TGG + chr4.4:41092671-41092690 None:intergenic 50.0%
GGCTGTGAAGCGAATTCTTG+TGG - chr4.4:41093682-41093701 MS.gene30525:intron 50.0%
TATCAGGTAGTGCACGAGTG+GGG - chr4.4:41093105-41093124 MS.gene30525:intron 50.0%
TTTGGTGGAGTAGGTGGAAG+TGG - chr4.4:41094651-41094670 MS.gene30525:intron 50.0%
! CTACCATTTGGTGGAGTAGG+TGG - chr4.4:41094645-41094664 MS.gene30525:intron 50.0%
! GGAGTAGGTGGAAGTGGATT+TGG - chr4.4:41094657-41094676 MS.gene30525:intron 50.0%
! GGCAAGATCTGGCGTTTTGA+TGG + chr4.4:41094867-41094886 None:intergenic 50.0%
! TTGCAACCGCGCTGTAGTTT+TGG - chr4.4:41092964-41092983 MS.gene30525:intron 50.0%
AAAATAGAGATGGGGGGGGG+GGG + chr4.4:41090954-41090973 None:intergenic 55.0%
ACTCCAGTGTTACAGGGGTC+AGG + chr4.4:41093160-41093179 None:intergenic 55.0%
AGGGTTGCGTCGTTTCCTAG+TGG - chr4.4:41089591-41089610 MS.gene30525:CDS 55.0%
CCACCCAACTCCAGTGTTAC+AGG + chr4.4:41093167-41093186 None:intergenic 55.0%
CCTGTAACACTGGAGTTGGG+TGG - chr4.4:41093164-41093183 MS.gene30525:intron 55.0%
CTACAGCGCGGTTGCAATTG+AGG + chr4.4:41092961-41092980 None:intergenic 55.0%
GACCCCTGTAACACTGGAGT+TGG - chr4.4:41093160-41093179 MS.gene30525:intron 55.0%
GGAGTTGGGTGGAAAATGCC+CGG - chr4.4:41093175-41093194 MS.gene30525:intron 55.0%
GGGGGATCCACCAAGATTGT+TGG + chr4.4:41094143-41094162 None:intergenic 55.0%
TGGAAAATGCCCGGCAGTAG+TGG - chr4.4:41093184-41093203 MS.gene30525:intron 55.0%
AAATAGAGATGGGGGGGGGG+GGG + chr4.4:41090953-41090972 None:intergenic 60.0%
GCACCTGACCCCTGTAACAC+TGG - chr4.4:41093154-41093173 MS.gene30525:intron 60.0%
GGTTATCCAAGGGGGACCAC+AGG - chr4.4:41092790-41092809 MS.gene30525:intron 60.0%
AATAGAGATGGGGGGGGGGG+GGG + chr4.4:41090952-41090971 None:intergenic 65.0%
CGGATTCCTGTGGTCCCCCT+TGG + chr4.4:41092799-41092818 None:intergenic 65.0%
ATAGAGATGGGGGGGGGGGG+GGG + chr4.4:41090951-41090970 None:intergenic 70.0%
TAGAGATGGGGGGGGGGGGG+GGG + chr4.4:41090950-41090969 None:intergenic 75.0%
! AGAGATGGGGGGGGGGGGGG+GGG + chr4.4:41090949-41090968 None:intergenic 80.0%
! AGATGGGGGGGGGGGGGGGG+GGG + chr4.4:41090947-41090966 None:intergenic 85.0%
! GAGATGGGGGGGGGGGGGGG+GGG + chr4.4:41090948-41090967 None:intergenic 85.0%
! ATGGGGGGGGGGGGGGGGGG+GGG + chr4.4:41090945-41090964 None:intergenic 90.0%
! GATGGGGGGGGGGGGGGGGG+GGG + chr4.4:41090946-41090965 None:intergenic 90.0%
! TGGGGGGGGGGGGGGGGGGG+GGG + chr4.4:41090944-41090963 None:intergenic 95.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 41089496 41094893 41089496 ID=MS.gene30525
chr4.4 mRNA 41089496 41094893 41089496 ID=MS.gene30525.t1;Parent=MS.gene30525
chr4.4 exon 41094702 41094893 41094702 ID=MS.gene30525.t1.exon1;Parent=MS.gene30525.t1
chr4.4 CDS 41094702 41094893 41094702 ID=cds.MS.gene30525.t1;Parent=MS.gene30525.t1
chr4.4 exon 41092128 41092196 41092128 ID=MS.gene30525.t1.exon2;Parent=MS.gene30525.t1
chr4.4 CDS 41092128 41092196 41092128 ID=cds.MS.gene30525.t1;Parent=MS.gene30525.t1
chr4.4 exon 41091951 41092047 41091951 ID=MS.gene30525.t1.exon3;Parent=MS.gene30525.t1
chr4.4 CDS 41091951 41092047 41091951 ID=cds.MS.gene30525.t1;Parent=MS.gene30525.t1
chr4.4 exon 41091529 41091735 41091529 ID=MS.gene30525.t1.exon4;Parent=MS.gene30525.t1
chr4.4 CDS 41091529 41091735 41091529 ID=cds.MS.gene30525.t1;Parent=MS.gene30525.t1
chr4.4 exon 41091154 41091278 41091154 ID=MS.gene30525.t1.exon5;Parent=MS.gene30525.t1
chr4.4 CDS 41091154 41091278 41091154 ID=cds.MS.gene30525.t1;Parent=MS.gene30525.t1
chr4.4 exon 41090605 41090709 41090605 ID=MS.gene30525.t1.exon6;Parent=MS.gene30525.t1
chr4.4 CDS 41090605 41090709 41090605 ID=cds.MS.gene30525.t1;Parent=MS.gene30525.t1
chr4.4 exon 41090342 41090514 41090342 ID=MS.gene30525.t1.exon7;Parent=MS.gene30525.t1
chr4.4 CDS 41090342 41090514 41090342 ID=cds.MS.gene30525.t1;Parent=MS.gene30525.t1
chr4.4 exon 41090169 41090259 41090169 ID=MS.gene30525.t1.exon8;Parent=MS.gene30525.t1
chr4.4 CDS 41090169 41090259 41090169 ID=cds.MS.gene30525.t1;Parent=MS.gene30525.t1
chr4.4 exon 41089849 41089998 41089849 ID=MS.gene30525.t1.exon9;Parent=MS.gene30525.t1
chr4.4 CDS 41089849 41089998 41089849 ID=cds.MS.gene30525.t1;Parent=MS.gene30525.t1
chr4.4 exon 41089496 41089759 41089496 ID=MS.gene30525.t1.exon10;Parent=MS.gene30525.t1
chr4.4 CDS 41089496 41089759 41089496 ID=cds.MS.gene30525.t1;Parent=MS.gene30525.t1
Gene Sequence

>MS.gene30525

ATGGGAACTTTGGAGATAGATCATCTAAAGAATATGAGAGAATATTTTAGGAGTGGAAAAACAAAAGAAGCATCTTGGAGAGAATCACAACTAAAAGGGTTGCGTCGTTTCCTAGTGGAAAAAGAGAATGATATCTTCATGGCCCTCATGCAAGATTTAGGGAAACATCGTCTTGAAGCTTTTAGAGACGAGGTATTTATTTCTAAACTCTCTACATATATATAATTTCTTCAAGATATGTAGACATATTTTCCAATCCAAGGAATTTATTTATTTTTTGGTAAGGTTTTCAACCAAATGATCCGTACACACATATATATGGTTCATGAGGACAAAACTATCTAGTTAGTTAGGAAATAAGATATATAACAACATGGATATCCTATATAAAAAAAGATATCCATAAAGTAACCATTAATAAAAAGTTGTGCACCTTCATCTATAGAGAATAAAACACTATTTAAGGTGAGATTAGTGTTCCATATAATCTATATGGATCAATGCTTGAAAATGGTTTAAAACTCAAACAATATAACCACGTTCAAGTAAAAGCTCATTTATTTGTCCATGAAAAAGTTAAGAAAAATAAATATTAGAGATTCAAATTTCAACTTACATCTGTTTTCCATTATTTTTGTTAAAGCGACACCAATCAAGTCTGTGTCTTAATTTAAGGACATAGCAAATGACCTATGAATTGAACTTGTCGGTCTTCATTAAAGTTTTGAACGATTTTGAAGCATTGAAATAACATAGATCACATGAGACTTTCTCATCTAGCATTTACACGAGAATAGTTAGGGCCCGCATAACTTTGCTTGACAAACCCTTGGCCTTTGTTTATCTCTAATTTATTACTTTTTTCTTTTCAAAATGCATGTCATAATCAACCATTTCACACATGTTAATGCACAACTTTGACTGTTAATATATTTAATTATCTAAAGTAAAAAATTATAAAAATTTAATATTTTGAATATATTTATCGAGACAAATTCAAACAACATCTTACATGCTAATATTTGTATTAAAGTTTTTTTTTGGTATTAAAGTTTAATATATGATCTATTAGTCTATTTAAATAAGTACTTTAAAATAAGTTTGTTTTTTCATTTATTTTGTAAAGAGTCTAACGACAAAACTCACACACACTAAATGACTCAGAAGTGTGGTGCTTAAATCGGCGCTTCAAGATTTGTTAGGTATATTTGCACTTAAAGATTTGTCAAGTATATCTGCAGTCTTTTACCATTTGTGATGTTTAAATTTTATCTAGGAAACACTAATTTTTCTATTGTTTTTATATGAACTAAGTAATATTAAATAAAAATTTACGAAATAAAATTTATGTGATCCACCAATATCATACTATCCACCTCGTCTCCCCAAATAAAATTTGAGAAATGATATTTGTATAACCATTTTTTTTACAATCTCTCTCTCCCCCCCCCCCCCCCCCCCCCCCCCATCTCTATTTTTTTTGTCCAATAAGAAGAGTGAAAAAAATTGTTACGAAAGTTGTTGAGAAATAGCTGTACAAATATTATTCCTCATGCTATAAACCATATATACAACCAAACAAAACAATTATAGTAGAAAAAAGATATAGTTTATTAGTGACATCTTTTTACAAAAAAGAGTATATCTCCTAAAAATAAACGGTATTTAGTGGAAAAGTTAAATCATTTTTTTAAGGAAATTTAAACAATTCATAGTTTATTAAGATATATGCTACAAACCATACAACCAAACAAAACGATTTTAGGAGAAAAAAGATATAGTTTATTAGTGACATCACTTTACAAAAAAGAGTATATCTCCTAAAAATAAACGGTATTTAGTGGAAAAGTTAAATAATTTTTTTAAGGAAAGTTAAACAATTCATAGTTTATTAAGATATATGCTAAAAACCATACAACCAAACAAAACGATTTTAGTAGAAAAAAGATATAGTTTTTTTTTTTGACAAAAGAAAAAAGATATAGTTTATTAGTGACATCTTTTTACAAAAAAGAGTATATCTCCTAAAAATAAACGGAATTTAGAGGAAAAGTTAAATCATTTTTAAGGAAAGTTAAAAAATTCATAGTTTATTAAGATAAAAAAAATATATTTTATTTATTTGAAGAAGTAAAATTTAGTAATAAATGTTGGCTAGTTGAATAAGATTAACTCCATTGAAGCGATCCTACAAAAAATGTAAAAGCATAATAGATATTTTTCACAAAAAATAAACAATATTCATTTGATAGAGTATATCGGTAGGAGTTGGGGTTCAAACCTAAGATTCTCCACTTATTCACGTTTAGAGGTAAATTTATAGTCAATATACTACTTGACCAAAAAAGATCGAATATATCAATATAAAAACAAATTTGCTAAAAGCAATAACGATAAATCTGCGAACAAACTCACAATATTCATGTTATTACATAAAACGACAAAATACATATATCCGGAATAATCATTGCTTTAGACTTGTAACGTTGATGACATCAAAATCATTATCCGAATCTGCACTAGATCGAAGTGATCTAACGGTCTAAATCAAACAAATCGAAGTGATCTAACAGTCTGAATCGAACAAACACCGTTATAAGGCGGAAAAGCAAAACAACGCCACTGCACAACGACGAACAAAAGTTACAAATGTATTGTTCTCATTATATACTTTCTAATTACTAAATCCATTCACAGATAGGAACGTTAGTGAAGACCTTAAATCTCGCATTAAAGTGTCTGAAAGATTGGATGTCAAGCAAGAAGGTATGATCTATGTAAAACTAACGTGAAGAAAATATGTATATGTGAAGCCACTAATAACGAAATAATTTACTTTGATATAGGCTCCACTACCTGCAATAGCATTGCTTTCAAGTGCAGAAATTGTTCATGAGCCTCTGGGTGTCGTTCTCATTATTTCATCTTGGAATTTGCCCTTTGGTGAGTTAATTATATACTAAGATGCTTGTTGCTTTGAACTCAAATCACATTCATTCAATTACTAGAAAAAGTTGGAACAACGGCAAAAATTTAGAGACGGAAAATTTACTGACCAAATTTATTTTTTCCGCCTCTAATTTTTTTCGTTATTCTGTTAGAGTCTTCATAAATTTGGTCTAGTAACATAATATTATGTAACCAATAAAAAAACACAGGATTGTCTTTGGAGCCACTGATAGGAGCTATAGCTGCTGGAAACGCAGCAGTGTTAAAACCTTCAGAGTTGTCTCCTGCATGTTCCTCTCTACTTGCTTCTGGCATTGCCACTTACTTGGACAATAAAGCCATTAAGGTTATCCAAGGGGGACCACAGGAATCCGACCAATTATTACAGCAAAAATGGGACAAAATCTTCTTTACAGGTCAACATTACCCAAATATTTTTCATCGCCACTTTTAGATTTTGAGCAGATTTTAAATTGCAGTCACGGTAACGGTGACATTCATGTTTTAATGTGGCCTCAATTGCAACCGCGCTGTAGTTTTGGCAATATCAAAAACTATTATGAAGCAGTGCAAATTATGGCCGCGGACCTTTATTTAAAGCCTGGTTATGAGTCTCTTGTCACAATTTTTGATGAGTTTTTTTCTTATTGTAAAAACTAATATCAGGTAGTGCACGAGTGGGGAGCATTGTGATGTCAGCAGCTGCGAAGCACCTGACCCCTGTAACACTGGAGTTGGGTGGAAAATGCCCGGCAGTAGTGGACTCACTTTCATCTTCTTGGGATTTAGAGGTGAGTTAATTCATTTTCATTTTTCACTATAGTAGCGTCCCAATTCTTGATAACACGCTCGAGCGTAGCAGAATGTGCAAGAGCATACACTTCAGGAGTAAACTTGTAAACTAAATTGTAATATTTAAATAAAGCTCTATTGTTGTGCCTTTTAGGTTTCTAAGTTAGTAGTCTAGTCCATCGGGTTTTACTATATATTTGTTTGTAACCTTTATTATGTCATGCCGTTGTAATCTTATGAAGCCCTAGCCGTTACTGTTGTTGTGTTATTCCTTCTTCTATTTGATTCTCTATATCGTTAACATCTATTACCTTAATTTATCGGATAAAAGAAAACAACGGTAACAAACTTGTTGGAGATGTATGCATAATTGTCCCACAAGTTACATTTGATTAAGTTGGTTGATTCTAATTATCAATGTAACAATTTCTGGTGATTATAAGGTGGCTGTGAAGCGAATTCTTGTGGGAAAATATGGAACTTGTGCTGGTCAAGCATGCATAGCAATTGACTATGTCATCGTCGAAAAGAGTTGCTGTTCAAAACTGGTACATCTCTTAAATTCAAGTATTCAAGTTCACTGTTATGTAAGTTTTTGATTATACTTACTCTTGTTTTGTTTTATTTTATTTTATAAGGTGGAATTGATGAAGGTGTGGATCAAGAAAATGTTTGGAGACAACCCACAACATTCCAACACTATAGCAAGGATAGTTAATAAACAACACTTAACTAGATTAAAGAAACTTCTTGATGATCAAAATGTTCAAGAATCTGTTGTTTATGGTGGCTCAATTGACGAAGAAAACTTGTAAATAACACCCTGCCTTTCACATACTAATATTCCTAAATTCCTATCACCAAAAAAACAACATGTGCTCAAATATGTGCAGATTTATTGAGCCAACAATCTTGGTGGATCCCCCACTTGATGCAGCAATAATGTTAGATGAAGTTTTTGGCCCACTACTTCCAATTATTACTGTAAGTTTCATTGCATAAATAATGACACTAATGACTATTTTACAAATGTCTGGTATGGATCTTGACGTTACAAAATCAAACTCTTTCGACTTAGTTTTACCACATGCTTATATCTATCTTTTCTCTCACTTAAGTTCCCTTTATTTTATCTTTTGCATAATAATTTGCAGGTGGAGAAGATTGAGGACAGTATTGAATTCATAAGCTCTAGGCCTAAACCTCTTGCTCTTTATGTTTTCACCAAAAACCAAACATTGCAGAACAGAATGATATCTGAAACATCATCTGGCAGTGTTACTTTCAATGATGCAATTCTACAAGTAGAACTTTACACACTTCAATTTTTCACATACCACTTTATATTAATGTTCAAATACATAACTTAATGTGCATAATTTGTTGTTTACAGTATGCAGCAGATAGTCTACCATTTGGTGGAGTAGGTGGAAGTGGATTTGGCATGTACCATGGGAAATTCTCCTTTGACACATTCAGTCACCAAAAAGCAATTGTTAGAAGAAGTTTCTTAACTGATTTTTGGTATAGATATCCACCATGGACTGCAAATAAGTTTCAACTACTTGAGGTCTCTTATAATTATGATTATTTGGGATTGGTCCTTGTTATTCTTGGATTAAAGAGACCATCAAAACGCCAGATCTTGCCTTGTTAG

Protein sequence

>MS.gene30525.t1

MGTLEIDHLKNMREYFRSGKTKEASWRESQLKGLRRFLVEKENDIFMALMQDLGKHRLEAFRDEIGTLVKTLNLALKCLKDWMSSKKAPLPAIALLSSAEIVHEPLGVVLIISSWNLPFGLSLEPLIGAIAAGNAAVLKPSELSPACSSLLASGIATYLDNKAIKVIQGGPQESDQLLQQKWDKIFFTGSARVGSIVMSAAAKHLTPVTLELGGKCPAVVDSLSSSWDLEVAVKRILVGKYGTCAGQACIAIDYVIVEKSCCSKLVELMKVWIKKMFGDNPQHSNTIARIVNKQHLTRLKKLLDDQNVQESVVYGGSIDEENLFIEPTILVDPPLDAAIMLDEVFGPLLPIITVEKIEDSIEFISSRPKPLALYVFTKNQTLQNRMISETSSGSVTFNDAILQYAADSLPFGGVGGSGFGMYHGKFSFDTFSHQKAIVRRSFLTDFWYRYPPWTANKFQLLEVSYNYDYLGLVLVILGLKRPSKRQILPC