Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31653.t1 | XP_003588480.1 | 96.2 | 261 | 10 | 0 | 28 | 288 | 29 | 289 | 8.60E-126 | 459.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31653.t1 | Q9FNE9 | 73.5 | 264 | 67 | 3 | 27 | 288 | 34 | 296 | 3.4e-91 | 336.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31653.t1 | G7I3E6 | 96.2 | 261 | 10 | 0 | 28 | 288 | 29 | 289 | 6.2e-126 | 459.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene31653.t1 | TR | PHD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051816 | MS.gene31653 | 0.818064 | 2.38E-52 | -1.69E-46 |
| MS.gene051896 | MS.gene31653 | 0.802002 | 6.90E-49 | -1.69E-46 |
| MS.gene051955 | MS.gene31653 | 0.816587 | 5.12E-52 | -1.69E-46 |
| MS.gene052308 | MS.gene31653 | 0.838211 | 3.29E-57 | -1.69E-46 |
| MS.gene052367 | MS.gene31653 | 0.826718 | 2.33E-54 | -1.69E-46 |
| MS.gene054593 | MS.gene31653 | 0.801977 | 6.98E-49 | -1.69E-46 |
| MS.gene055308 | MS.gene31653 | 0.834624 | 2.69E-56 | -1.69E-46 |
| MS.gene055578 | MS.gene31653 | 0.853674 | 2.04E-61 | -1.69E-46 |
| MS.gene055579 | MS.gene31653 | 0.812525 | 4.06E-51 | -1.69E-46 |
| MS.gene056041 | MS.gene31653 | 0.844073 | 9.48E-59 | -1.69E-46 |
| MS.gene05640 | MS.gene31653 | 0.841365 | 4.97E-58 | -1.69E-46 |
| MS.gene056528 | MS.gene31653 | 0.804425 | 2.17E-49 | -1.69E-46 |
| MS.gene057458 | MS.gene31653 | 0.808175 | 3.52E-50 | -1.69E-46 |
| MS.gene058853 | MS.gene31653 | 0.826607 | 2.47E-54 | -1.69E-46 |
| MS.gene059616 | MS.gene31653 | 0.805587 | 1.24E-49 | -1.69E-46 |
| MS.gene060473 | MS.gene31653 | 0.825367 | 4.87E-54 | -1.69E-46 |
| MS.gene060565 | MS.gene31653 | 0.818224 | 2.19E-52 | -1.69E-46 |
| MS.gene06093 | MS.gene31653 | 0.814475 | 1.51E-51 | -1.69E-46 |
| MS.gene061099 | MS.gene31653 | 0.831554 | 1.56E-55 | -1.69E-46 |
| MS.gene061260 | MS.gene31653 | 0.820759 | 5.79E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene072058 | MS.gene31653 | PPI |
| MS.gene31653 | MS.gene00617 | PPI |
| MS.gene31653 | MS.gene047200 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31653.t1 | MTR_1g007670 | 96.886 | 289 | 8 | 1 | 1 | 288 | 1 | 289 | 0.0 | 575 |
| MS.gene31653.t1 | MTR_1g007700 | 67.010 | 291 | 59 | 7 | 1 | 288 | 236 | 492 | 1.90e-124 | 366 |
| MS.gene31653.t1 | MTR_1g007700 | 83.810 | 105 | 17 | 0 | 184 | 288 | 69 | 173 | 2.49e-53 | 182 |
| MS.gene31653.t1 | MTR_3g095840 | 57.621 | 269 | 111 | 2 | 22 | 288 | 70 | 337 | 1.66e-101 | 302 |
| MS.gene31653.t1 | MTR_1g007690 | 68.276 | 145 | 17 | 2 | 144 | 288 | 1 | 116 | 2.93e-59 | 189 |
| MS.gene31653.t1 | MTR_8g051510 | 73.786 | 103 | 26 | 1 | 184 | 285 | 9 | 111 | 4.53e-48 | 157 |
| MS.gene31653.t1 | MTR_8g051470 | 72.727 | 77 | 20 | 1 | 210 | 285 | 1 | 77 | 8.10e-33 | 117 |
| MS.gene31653.t1 | MTR_3g027790 | 58.824 | 85 | 19 | 3 | 144 | 228 | 1 | 69 | 4.24e-21 | 86.3 |
| MS.gene31653.t1 | MTR_3g095830 | 53.846 | 52 | 24 | 0 | 21 | 72 | 56 | 107 | 9.83e-16 | 72.4 |
| MS.gene31653.t1 | MTR_3g027795 | 57.746 | 71 | 28 | 2 | 119 | 187 | 73 | 143 | 2.07e-15 | 72.4 |
| MS.gene31653.t1 | MTR_3g027780 | 69.767 | 43 | 13 | 0 | 141 | 183 | 3 | 45 | 4.87e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31653.t1 | AT5G24330 | 70.189 | 265 | 76 | 3 | 26 | 288 | 33 | 296 | 2.59e-129 | 371 |
| MS.gene31653.t1 | AT5G09790 | 56.604 | 265 | 110 | 2 | 25 | 287 | 64 | 325 | 1.50e-104 | 310 |
| MS.gene31653.t1 | AT5G09790 | 56.818 | 264 | 110 | 2 | 25 | 287 | 64 | 324 | 4.51e-104 | 308 |
| MS.gene31653.t1 | AT1G63490 | 30.612 | 98 | 66 | 1 | 6 | 103 | 220 | 315 | 5.99e-11 | 63.5 |
| MS.gene31653.t1 | AT1G63490 | 30.612 | 98 | 66 | 1 | 6 | 103 | 220 | 315 | 5.99e-11 | 63.5 |
Find 64 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCATACATTTGGGGATTT+TGG | 0.088459 | 1.1:+11921380 | None:intergenic |
| GCTATATTGCTACGTTTATC+TGG | 0.121333 | 1.1:+11919104 | None:intergenic |
| CTTGAAGAAATCAATAATTT+TGG | 0.167292 | 1.1:+11921086 | None:intergenic |
| ATTTGCCGGAGTTGCATTTC+TGG | 0.190452 | 1.1:+11921523 | None:intergenic |
| AATATAGCACGTTTCATTAA+TGG | 0.211173 | 1.1:-11919089 | MS.gene31653:CDS |
| GCATCCCTTGGCGCCATTCC+AGG | 0.276840 | 1.1:+11920311 | None:intergenic |
| CGCAAAGAAGCAACTTAGTT+GGG | 0.323658 | 1.1:+11921499 | None:intergenic |
| CAACTTAGTTGGGGATTTGC+CGG | 0.329908 | 1.1:+11921509 | None:intergenic |
| GGGCAAAACCAAGAGGATTT+AGG | 0.342107 | 1.1:+11921420 | None:intergenic |
| CTCCTCTTCAAATCATCATT+TGG | 0.347535 | 1.1:+11920410 | None:intergenic |
| GAGAAAGCGGAGTAGTAGTT+TGG | 0.397233 | 1.1:-11920471 | MS.gene31653:CDS |
| GTTGTTTATGATCCTGTAGA+AGG | 0.406850 | 1.1:-11919369 | MS.gene31653:CDS |
| CTTCTGTACCTAAATCCTCT+TGG | 0.418430 | 1.1:-11921428 | MS.gene31653:CDS |
| GTCGTCATCGTTGAAGGTTG+TGG | 0.450060 | 1.1:+11921557 | None:intergenic |
| ACGTTCAAGAACAGGAGAAT+TGG | 0.452094 | 1.1:+11920289 | None:intergenic |
| ATTCCTCCACGTTCAAGAAC+AGG | 0.452190 | 1.1:+11920281 | None:intergenic |
| TCGCAAAGAAGCAACTTAGT+TGG | 0.454512 | 1.1:+11921498 | None:intergenic |
| GACGTCGTCGTCATCGTTGA+AGG | 0.454523 | 1.1:+11921551 | None:intergenic |
| AAAGCGGAGTAGTAGTTTGG+TGG | 0.462327 | 1.1:-11920468 | MS.gene31653:CDS |
| CTTTGCGACAATTGCGACAA+CGG | 0.472963 | 1.1:-11921483 | MS.gene31653:CDS |
| CGCGTTGACTGCTACTAAAA+CGG | 0.476912 | 1.1:-11920360 | MS.gene31653:CDS |
| TAGGTGTGAGGCAGAAGAGA+TGG | 0.477113 | 1.1:+11921457 | None:intergenic |
| CTATATTGCTACGTTTATCT+GGG | 0.481139 | 1.1:+11919105 | None:intergenic |
| ACAATAATAACAGAATATGT+TGG | 0.490743 | 1.1:-11919224 | MS.gene31653:CDS |
| CAAGAGGATTTAGGTACAGA+AGG | 0.492170 | 1.1:+11921429 | None:intergenic |
| TAACTTGTGCAGAAGTATGA+TGG | 0.493269 | 1.1:-11919418 | MS.gene31653:CDS |
| TTAGGTACAGAAGGGAGGAT+AGG | 0.500711 | 1.1:+11921438 | None:intergenic |
| TTCTAATCCTTCACAGTCAC+TGG | 0.505311 | 1.1:-11919135 | MS.gene31653:CDS |
| GCATCTAAGATTCTGAATCA+TGG | 0.512650 | 1.1:-11921045 | MS.gene31653:intron |
| ATAAGTACTTACCCTTCTAC+AGG | 0.515050 | 1.1:+11919357 | None:intergenic |
| ATTAGAACAGATGGCGTCGT+TGG | 0.518768 | 1.1:-11920387 | MS.gene31653:CDS |
| ATTCAAAGAAGAAGAGAAAG+CGG | 0.540362 | 1.1:-11920484 | MS.gene31653:CDS |
| ACAGGAGAATTGGCATCCCT+TGG | 0.541184 | 1.1:+11920299 | None:intergenic |
| TCTTGAACGTGGAGGAATGC+AGG | 0.541405 | 1.1:-11920276 | MS.gene31653:intron |
| AAGAATCGGGAATATGATGA+TGG | 0.544853 | 1.1:-11919185 | MS.gene31653:CDS |
| AGGAGAATGTCCGCCCCTCA+TGG | 0.545962 | 1.1:-11919391 | MS.gene31653:CDS |
| TGCAGAAGTATGATGGAAAG+AGG | 0.546783 | 1.1:-11919411 | MS.gene31653:CDS |
| TGGGGTTGTGAGAGCAGGAA+GGG | 0.547853 | 1.1:+11921400 | None:intergenic |
| AATGAGCTTACATACATGCC+TGG | 0.552496 | 1.1:-11920329 | MS.gene31653:CDS |
| CATGCCTGGAATGGCGCCAA+GGG | 0.555292 | 1.1:-11920315 | MS.gene31653:CDS |
| AATTCTCCTGTTCTTGAACG+TGG | 0.561001 | 1.1:-11920287 | MS.gene31653:CDS |
| GGAATTCTTCTTCGACGAAG+TGG | 0.577490 | 1.1:+11921597 | None:intergenic |
| ACATGCCTGGAATGGCGCCA+AGG | 0.581749 | 1.1:-11920316 | MS.gene31653:CDS |
| GCTTACATACATGCCTGGAA+TGG | 0.584838 | 1.1:-11920324 | MS.gene31653:CDS |
| TCGACGAAGTGGTGAAGCCA+TGG | 0.587847 | 1.1:+11921608 | None:intergenic |
| CAGAATCTTAGATGCATCAA+CGG | 0.589395 | 1.1:+11921053 | None:intergenic |
| TGCCAAATGATGATTTGAAG+AGG | 0.592036 | 1.1:-11920412 | MS.gene31653:CDS |
| GAAGAGGAGATTAGAACAGA+TGG | 0.593117 | 1.1:-11920396 | MS.gene31653:CDS |
| TGAAAGGATGCATACATTTG+GGG | 0.604501 | 1.1:+11921373 | None:intergenic |
| TTGGGGTTGTGAGAGCAGGA+AGG | 0.612150 | 1.1:+11921399 | None:intergenic |
| TTGTTTATGATCCTGTAGAA+GGG | 0.614616 | 1.1:-11919368 | MS.gene31653:intron |
| TCTGCACAAGTTAAGAGTCT+CGG | 0.617054 | 1.1:+11919428 | None:intergenic |
| GCAAAGAAGCAACTTAGTTG+GGG | 0.617673 | 1.1:+11921500 | None:intergenic |
| AAGAGGATTTAGGTACAGAA+GGG | 0.621884 | 1.1:+11921430 | None:intergenic |
| GTTTGCCAGAAATGCAACTC+CGG | 0.639299 | 1.1:-11921528 | MS.gene31653:CDS |
| AGGATTTAGGTACAGAAGGG+AGG | 0.647659 | 1.1:+11921433 | None:intergenic |
| TCTCCTGTTCTTGAACGTGG+AGG | 0.653986 | 1.1:-11920284 | MS.gene31653:CDS |
| CAGAAGGGAGGATAGGTGTG+AGG | 0.654698 | 1.1:+11921445 | None:intergenic |
| GGATCATAAACAACCATGAG+GGG | 0.675550 | 1.1:+11919378 | None:intergenic |
| AGGATCATAAACAACCATGA+GGG | 0.678750 | 1.1:+11919377 | None:intergenic |
| TCATAAACAACCATGAGGGG+CGG | 0.687468 | 1.1:+11919381 | None:intergenic |
| CAGGATCATAAACAACCATG+AGG | 0.703912 | 1.1:+11919376 | None:intergenic |
| GCAGGAAGGGCAAAACCAAG+AGG | 0.707902 | 1.1:+11921413 | None:intergenic |
| CAGATGACCAGTGACTGTGA+AGG | 0.718767 | 1.1:+11919128 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTTTCTTTTTTTTGT+AGG | - | chr1.1:11921394-11921413 | MS.gene31653:CDS | 10.0% |
| !! | AAAAAAGAAAATTAAAAGTC+AGG | + | chr1.1:11921390-11921409 | None:intergenic | 15.0% |
| !!! | TATTATTGTCAAATCTTTTA+TGG | + | chr1.1:11921442-11921461 | None:intergenic | 15.0% |
| !! | ACAATAATAACAGAATATGT+TGG | - | chr1.1:11921453-11921472 | MS.gene31653:CDS | 20.0% |
| !! | ATGAAATGAAATCAAATGAA+AGG | + | chr1.1:11919323-11919342 | None:intergenic | 20.0% |
| !! | TAATGTTTAGAGAATTTGAT+TGG | - | chr1.1:11919694-11919713 | MS.gene31653:intron | 20.0% |
| !! | TTAATTGAAAAATTCTACTG+TGG | - | chr1.1:11920554-11920573 | MS.gene31653:intron | 20.0% |
| !!! | CTTGAAGAAATCAATAATTT+TGG | + | chr1.1:11919594-11919613 | None:intergenic | 20.0% |
| !!! | GTTTGTATATATTTTTTCTC+AGG | - | chr1.1:11921208-11921227 | MS.gene31653:intron | 20.0% |
| !!! | TTAGGTATTATATTGTTGTT+AGG | - | chr1.1:11920453-11920472 | MS.gene31653:CDS | 20.0% |
| ! | AAAAAAGAAAAGGAAGTTGT+TGG | - | chr1.1:11920236-11920255 | MS.gene31653:intron | 25.0% |
| ! | AATATAGCACGTTTCATTAA+TGG | - | chr1.1:11921588-11921607 | MS.gene31653:CDS | 25.0% |
| ! | TTTAATAACGTGATTAGATC+TGG | - | chr1.1:11919471-11919490 | MS.gene31653:intron | 25.0% |
| !! | ATAACTTTTGTAAGACTGTT+TGG | + | chr1.1:11920087-11920106 | None:intergenic | 25.0% |
| !!! | ATAATTTTGGTTTGTACAAG+AGG | + | chr1.1:11919581-11919600 | None:intergenic | 25.0% |
| !!! | ATGTAGACTTTTTGAAGAAT+CGG | - | chr1.1:11921478-11921497 | MS.gene31653:CDS | 25.0% |
| !!! | CTTAATTGAGTTTGTTAGTT+AGG | - | chr1.1:11920435-11920454 | MS.gene31653:CDS | 25.0% |
| AATGAAAGGATGCATACATT+TGG | + | chr1.1:11919309-11919328 | None:intergenic | 30.0% | |
| ATGAAAGGATGCATACATTT+GGG | + | chr1.1:11919308-11919327 | None:intergenic | 30.0% | |
| ATTCAAAGAAGAAGAGAAAG+CGG | - | chr1.1:11920193-11920212 | MS.gene31653:intron | 30.0% | |
| CATTTCAATACGTCAATGTT+TGG | - | chr1.1:11919340-11919359 | MS.gene31653:intron | 30.0% | |
| CTATATTGCTACGTTTATCT+GGG | + | chr1.1:11921575-11921594 | None:intergenic | 30.0% | |
| GTTTAGAGAATTTGATTGGA+TGG | - | chr1.1:11919698-11919717 | MS.gene31653:intron | 30.0% | |
| TGAGACATTGAATTGATTGT+TGG | - | chr1.1:11920680-11920699 | MS.gene31653:intron | 30.0% | |
| TGCAATACTGAAGTATAAAG+TGG | - | chr1.1:11921035-11921054 | MS.gene31653:intron | 30.0% | |
| TGGTGGTTTCAAAAAAGAAA+AGG | - | chr1.1:11920226-11920245 | MS.gene31653:intron | 30.0% | |
| TGTTGAGTTATGTTTGTATG+AGG | - | chr1.1:11920526-11920545 | MS.gene31653:intron | 30.0% | |
| TTGTTTATGATCCTGTAGAA+GGG | - | chr1.1:11921309-11921328 | MS.gene31653:intron | 30.0% | |
| ! | ACTTTGTTGCCTTTATTTCT+AGG | + | chr1.1:11921014-11921033 | None:intergenic | 30.0% |
| ! | TATTGTTGTTAGGATACGTT+TGG | - | chr1.1:11920463-11920482 | MS.gene31653:CDS | 30.0% |
| ! | TCTGTTTTCACAAGCTATTA+TGG | - | chr1.1:11919865-11919884 | MS.gene31653:intron | 30.0% |
| ! | TTAGGTTGTCAACACTAATT+AGG | - | chr1.1:11920791-11920810 | MS.gene31653:intron | 30.0% |
| !! | AGTTTATACTTTTTGAGAGC+TGG | - | chr1.1:11920849-11920868 | MS.gene31653:intron | 30.0% |
| !! | CTACAAACTAGTTTGGATTT+TGG | - | chr1.1:11921063-11921082 | MS.gene31653:CDS | 30.0% |
| !! | CTATTTTTCACAACCTATTG+TGG | - | chr1.1:11919936-11919955 | MS.gene31653:intron | 30.0% |
| !! | GAAGTGTGTGTTTTAAATTG+TGG | - | chr1.1:11920163-11920182 | MS.gene31653:intron | 30.0% |
| !! | TGTAGACTTTTTGAAGAATC+GGG | - | chr1.1:11921479-11921498 | MS.gene31653:CDS | 30.0% |
| !! | TTGTTTTGTTGAACTGATAC+TGG | - | chr1.1:11920768-11920787 | MS.gene31653:intron | 30.0% |
| !!! | AAGGTTGTGGATTGTTTTTT+GGG | + | chr1.1:11919110-11919129 | None:intergenic | 30.0% |
| !!! | GCTGTTTTTACAAGTTATTG+TGG | - | chr1.1:11919756-11919775 | MS.gene31653:intron | 30.0% |
| AAGAATCGGGAATATGATGA+TGG | - | chr1.1:11921492-11921511 | MS.gene31653:CDS | 35.0% | |
| AAGAGGATTTAGGTACAGAA+GGG | + | chr1.1:11919250-11919269 | None:intergenic | 35.0% | |
| AGGATCATAAACAACCATGA+GGG | + | chr1.1:11921303-11921322 | None:intergenic | 35.0% | |
| ATAAGTACTTACCCTTCTAC+AGG | + | chr1.1:11921323-11921342 | None:intergenic | 35.0% | |
| CAGAATCTTAGATGCATCAA+CGG | + | chr1.1:11919627-11919646 | None:intergenic | 35.0% | |
| CTCCTCTTCAAATCATCATT+TGG | + | chr1.1:11920270-11920289 | None:intergenic | 35.0% | |
| CTGCACTATTTGTCATGATT+TGG | - | chr1.1:11921090-11921109 | MS.gene31653:CDS | 35.0% | |
| GACATTGAATTGATTGTTGG+TGG | - | chr1.1:11920683-11920702 | MS.gene31653:intron | 35.0% | |
| GAGAATTTGATTGGATGGAT+TGG | - | chr1.1:11919703-11919722 | MS.gene31653:intron | 35.0% | |
| GCAGTGTTACCTAGAAATAA+AGG | - | chr1.1:11921002-11921021 | MS.gene31653:intron | 35.0% | |
| GCTATATTGCTACGTTTATC+TGG | + | chr1.1:11921576-11921595 | None:intergenic | 35.0% | |
| GCTCTGATAATCTGATTAAG+TGG | + | chr1.1:11921140-11921159 | None:intergenic | 35.0% | |
| GTTGTTTATGATCCTGTAGA+AGG | - | chr1.1:11921308-11921327 | MS.gene31653:intron | 35.0% | |
| TAATACAAGCGCAATGTCTT+TGG | - | chr1.1:11920902-11920921 | MS.gene31653:intron | 35.0% | |
| TCGTCTTCATTTGTACAACT+AGG | + | chr1.1:11920824-11920843 | None:intergenic | 35.0% | |
| TCTATTGACGTTATGCTGTT+TGG | - | chr1.1:11919542-11919561 | MS.gene31653:intron | 35.0% | |
| TCTCAACTTATGCTCAATGT+AGG | - | chr1.1:11920927-11920946 | MS.gene31653:intron | 35.0% | |
| TGAAAGGATGCATACATTTG+GGG | + | chr1.1:11919307-11919326 | None:intergenic | 35.0% | |
| TGCCAAATGATGATTTGAAG+AGG | - | chr1.1:11920265-11920284 | MS.gene31653:intron | 35.0% | |
| ! | ATGCATACATTTGGGGATTT+TGG | + | chr1.1:11919300-11919319 | None:intergenic | 35.0% |
| ! | CTATTGACGTTATGCTGTTT+GGG | - | chr1.1:11919543-11919562 | MS.gene31653:intron | 35.0% |
| ! | GCATCTAAGATTCTGAATCA+TGG | - | chr1.1:11919632-11919651 | MS.gene31653:intron | 35.0% |
| ! | TAACTTGTGCAGAAGTATGA+TGG | - | chr1.1:11921259-11921278 | MS.gene31653:intron | 35.0% |
| ! | TAGCTTGTGAAAACAGTTGA+TGG | + | chr1.1:11919992-11920011 | None:intergenic | 35.0% |
| ! | TGCATACATTTGGGGATTTT+GGG | + | chr1.1:11919299-11919318 | None:intergenic | 35.0% |
| ! | TTGTTGAACTGATACTGGTT+AGG | - | chr1.1:11920773-11920792 | MS.gene31653:intron | 35.0% |
| !! | GCTGTTTTCATAAGCTAATG+TGG | - | chr1.1:11919825-11919844 | MS.gene31653:intron | 35.0% |
| !! | TTATACTTTTTGAGAGCTGG+TGG | - | chr1.1:11920852-11920871 | MS.gene31653:intron | 35.0% |
| !! | TTGATTGGATGGATTGGTTT+GGG | - | chr1.1:11919709-11919728 | MS.gene31653:intron | 35.0% |
| !! | TTTGATTGGATGGATTGGTT+TGG | - | chr1.1:11919708-11919727 | MS.gene31653:intron | 35.0% |
| !!! | GAAGGTTGTGGATTGTTTTT+TGG | + | chr1.1:11919111-11919130 | None:intergenic | 35.0% |
| AATGAGCTTACATACATGCC+TGG | - | chr1.1:11920348-11920367 | MS.gene31653:CDS | 40.0% | |
| AATTCTCCTGTTCTTGAACG+TGG | - | chr1.1:11920390-11920409 | MS.gene31653:CDS | 40.0% | |
| ACCAAACATTCACAACACCT+AGG | - | chr1.1:11919406-11919425 | MS.gene31653:CDS | 40.0% | |
| ACGTTCAAGAACAGGAGAAT+TGG | + | chr1.1:11920391-11920410 | None:intergenic | 40.0% | |
| CAAGAGGATTTAGGTACAGA+AGG | + | chr1.1:11919251-11919270 | None:intergenic | 40.0% | |
| CAGGATCATAAACAACCATG+AGG | + | chr1.1:11921304-11921323 | None:intergenic | 40.0% | |
| CCAAACATTCACAACACCTA+GGG | - | chr1.1:11919407-11919426 | MS.gene31653:CDS | 40.0% | |
| CGCAAAGAAGCAACTTAGTT+GGG | + | chr1.1:11919181-11919200 | None:intergenic | 40.0% | |
| CTTCTGTACCTAAATCCTCT+TGG | - | chr1.1:11919249-11919268 | MS.gene31653:CDS | 40.0% | |
| GAAGAGGAGATTAGAACAGA+TGG | - | chr1.1:11920281-11920300 | MS.gene31653:CDS | 40.0% | |
| GCAAAGAAGCAACTTAGTTG+GGG | + | chr1.1:11919180-11919199 | None:intergenic | 40.0% | |
| GGATCATAAACAACCATGAG+GGG | + | chr1.1:11921302-11921321 | None:intergenic | 40.0% | |
| GGTCTGTCTACAAACTAGTT+TGG | - | chr1.1:11921056-11921075 | MS.gene31653:CDS | 40.0% | |
| TCGCAAAGAAGCAACTTAGT+TGG | + | chr1.1:11919182-11919201 | None:intergenic | 40.0% | |
| TCTGCACAAGTTAAGAGTCT+CGG | + | chr1.1:11921252-11921271 | None:intergenic | 40.0% | |
| TGGTATCACAGTGAGTTTGT+CGG | - | chr1.1:11919360-11919379 | MS.gene31653:intron | 40.0% | |
| TTCTAATCCTTCACAGTCAC+TGG | - | chr1.1:11921542-11921561 | MS.gene31653:CDS | 40.0% | |
| TTGCATCTCAATGTGCATGT+TGG | - | chr1.1:11920495-11920514 | MS.gene31653:intron | 40.0% | |
| TTTCACATGCTCTCCACAAT+AGG | + | chr1.1:11919952-11919971 | None:intergenic | 40.0% | |
| ! | ATTAGAGTATTCACGACCCT+AGG | + | chr1.1:11919426-11919445 | None:intergenic | 40.0% |
| ! | CAATGTGCATGTTGGTTGTT+TGG | - | chr1.1:11920503-11920522 | MS.gene31653:intron | 40.0% |
| ! | GCATACATTTGGGGATTTTG+GGG | + | chr1.1:11919298-11919317 | None:intergenic | 40.0% |
| ! | TGCAGAAGTATGATGGAAAG+AGG | - | chr1.1:11921266-11921285 | MS.gene31653:intron | 40.0% |
| AAAGCGGAGTAGTAGTTTGG+TGG | - | chr1.1:11920209-11920228 | MS.gene31653:intron | 45.0% | |
| AGGATTTAGGTACAGAAGGG+AGG | + | chr1.1:11919247-11919266 | None:intergenic | 45.0% | |
| ATGTTGCCTCTTTGTCGTCA+TGG | - | chr1.1:11920648-11920667 | MS.gene31653:intron | 45.0% | |
| ATTAGAACAGATGGCGTCGT+TGG | - | chr1.1:11920290-11920309 | MS.gene31653:CDS | 45.0% | |
| ATTCCTCCACGTTCAAGAAC+AGG | + | chr1.1:11920399-11920418 | None:intergenic | 45.0% | |
| ATTTGCCGGAGTTGCATTTC+TGG | + | chr1.1:11919157-11919176 | None:intergenic | 45.0% | |
| CAACTTAGTTGGGGATTTGC+CGG | + | chr1.1:11919171-11919190 | None:intergenic | 45.0% | |
| CTTTGCGACAATTGCGACAA+CGG | - | chr1.1:11919194-11919213 | MS.gene31653:CDS | 45.0% | |
| GAGAAAGCGGAGTAGTAGTT+TGG | - | chr1.1:11920206-11920225 | MS.gene31653:intron | 45.0% | |
| GCTTACATACATGCCTGGAA+TGG | - | chr1.1:11920353-11920372 | MS.gene31653:CDS | 45.0% | |
| GGAATTCTTCTTCGACGAAG+TGG | + | chr1.1:11919083-11919102 | None:intergenic | 45.0% | |
| GGGCAAAACCAAGAGGATTT+AGG | + | chr1.1:11919260-11919279 | None:intergenic | 45.0% | |
| GTTTGCCAGAAATGCAACTC+CGG | - | chr1.1:11919149-11919168 | MS.gene31653:CDS | 45.0% | |
| TCATAAACAACCATGAGGGG+CGG | + | chr1.1:11921299-11921318 | None:intergenic | 45.0% | |
| TCTAGGTAACACTGCGTACT+AGG | + | chr1.1:11920997-11921016 | None:intergenic | 45.0% | |
| TCTTAGCCATGACGACAAAG+AGG | + | chr1.1:11920657-11920676 | None:intergenic | 45.0% | |
| TTAGGTACAGAAGGGAGGAT+AGG | + | chr1.1:11919242-11919261 | None:intergenic | 45.0% | |
| ! | CCCTAGGTGTTGTGAATGTT+TGG | + | chr1.1:11919410-11919429 | None:intergenic | 45.0% |
| !! | CGCGTTGACTGCTACTAAAA+CGG | - | chr1.1:11920317-11920336 | MS.gene31653:CDS | 45.0% |
| !! | CGTTTTAGTAGCAGTCAACG+CGG | + | chr1.1:11920319-11920338 | None:intergenic | 45.0% |
| !!! | GTGGATTGTTTTTTGGGAGC+TGG | + | chr1.1:11919104-11919123 | None:intergenic | 45.0% |
| ACAGGAGAATTGGCATCCCT+TGG | + | chr1.1:11920381-11920400 | None:intergenic | 50.0% | |
| CAGATGACCAGTGACTGTGA+AGG | + | chr1.1:11921552-11921571 | None:intergenic | 50.0% | |
| GTCGTCATCGTTGAAGGTTG+TGG | + | chr1.1:11919123-11919142 | None:intergenic | 50.0% | |
| TAGGTGTGAGGCAGAAGAGA+TGG | + | chr1.1:11919223-11919242 | None:intergenic | 50.0% | |
| TCTCCTGTTCTTGAACGTGG+AGG | - | chr1.1:11920393-11920412 | MS.gene31653:CDS | 50.0% | |
| TCTTGAACGTGGAGGAATGC+AGG | - | chr1.1:11920401-11920420 | MS.gene31653:CDS | 50.0% | |
| !!! | GATTTTGGGGTTGTGAGAGC+AGG | + | chr1.1:11919285-11919304 | None:intergenic | 50.0% |
| CAGAAGGGAGGATAGGTGTG+AGG | + | chr1.1:11919235-11919254 | None:intergenic | 55.0% | |
| GACGTCGTCGTCATCGTTGA+AGG | + | chr1.1:11919129-11919148 | None:intergenic | 55.0% | |
| GCAGGAAGGGCAAAACCAAG+AGG | + | chr1.1:11919267-11919286 | None:intergenic | 55.0% | |
| TCGACGAAGTGGTGAAGCCA+TGG | + | chr1.1:11919072-11919091 | None:intergenic | 55.0% | |
| TGGGGTTGTGAGAGCAGGAA+GGG | + | chr1.1:11919280-11919299 | None:intergenic | 55.0% | |
| TTGGGGTTGTGAGAGCAGGA+AGG | + | chr1.1:11919281-11919300 | None:intergenic | 55.0% | |
| ACATGCCTGGAATGGCGCCA+AGG | - | chr1.1:11920361-11920380 | MS.gene31653:CDS | 60.0% | |
| AGGAGAATGTCCGCCCCTCA+TGG | - | chr1.1:11921286-11921305 | MS.gene31653:intron | 60.0% | |
| CATGCCTGGAATGGCGCCAA+GGG | - | chr1.1:11920362-11920381 | MS.gene31653:CDS | 60.0% | |
| GCATCCCTTGGCGCCATTCC+AGG | + | chr1.1:11920369-11920388 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 11919071 | 11921628 | 11919071 | ID=MS.gene31653 |
| chr1.1 | mRNA | 11919071 | 11921628 | 11919071 | ID=MS.gene31653.t1;Parent=MS.gene31653 |
| chr1.1 | exon | 11921388 | 11921628 | 11921388 | ID=MS.gene31653.t1.exon1;Parent=MS.gene31653.t1 |
| chr1.1 | CDS | 11921388 | 11921628 | 11921388 | ID=cds.MS.gene31653.t1;Parent=MS.gene31653.t1 |
| chr1.1 | exon | 11921046 | 11921126 | 11921046 | ID=MS.gene31653.t1.exon2;Parent=MS.gene31653.t1 |
| chr1.1 | CDS | 11921046 | 11921126 | 11921046 | ID=cds.MS.gene31653.t1;Parent=MS.gene31653.t1 |
| chr1.1 | exon | 11920277 | 11920506 | 11920277 | ID=MS.gene31653.t1.exon3;Parent=MS.gene31653.t1 |
| chr1.1 | CDS | 11920277 | 11920506 | 11920277 | ID=cds.MS.gene31653.t1;Parent=MS.gene31653.t1 |
| chr1.1 | exon | 11919369 | 11919469 | 11919369 | ID=MS.gene31653.t1.exon4;Parent=MS.gene31653.t1 |
| chr1.1 | CDS | 11919369 | 11919469 | 11919369 | ID=cds.MS.gene31653.t1;Parent=MS.gene31653.t1 |
| chr1.1 | exon | 11919071 | 11919283 | 11919071 | ID=MS.gene31653.t1.exon5;Parent=MS.gene31653.t1 |
| chr1.1 | CDS | 11919071 | 11919283 | 11919071 | ID=cds.MS.gene31653.t1;Parent=MS.gene31653.t1 |
| Gene Sequence |
| Protein sequence |
