Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89706.t1 | P48488.1 | 100 | 321 | 0 | 0 | 1 | 321 | 1 | 321 | 1.90E-190 | 674.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89706.t1 | P48488 | 100.0 | 321 | 0 | 0 | 1 | 321 | 1 | 321 | 4.6e-193 | 674.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89706.t1 | B7FHM9 | 99.7 | 321 | 1 | 0 | 1 | 321 | 1 | 321 | 8.8e-190 | 672.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04920 | MS.gene89706 | 0.81158 | 6.52E-51 | -1.69E-46 |
| MS.gene049283 | MS.gene89706 | 0.859777 | 3.27E-63 | -1.69E-46 |
| MS.gene049680 | MS.gene89706 | 0.803696 | 3.08E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene89706 | 0.810369 | 1.19E-50 | -1.69E-46 |
| MS.gene050271 | MS.gene89706 | 0.813662 | 2.28E-51 | -1.69E-46 |
| MS.gene050945 | MS.gene89706 | 0.828433 | 9.02E-55 | -1.69E-46 |
| MS.gene051597 | MS.gene89706 | 0.828656 | 7.96E-55 | -1.69E-46 |
| MS.gene051699 | MS.gene89706 | 0.828192 | 1.03E-54 | -1.69E-46 |
| MS.gene052242 | MS.gene89706 | -0.811484 | 6.84E-51 | -1.69E-46 |
| MS.gene052533 | MS.gene89706 | 0.815248 | 1.02E-51 | -1.69E-46 |
| MS.gene053228 | MS.gene89706 | 0.811075 | 8.39E-51 | -1.69E-46 |
| MS.gene053298 | MS.gene89706 | 0.80591 | 1.06E-49 | -1.69E-46 |
| MS.gene053963 | MS.gene89706 | 0.832284 | 1.03E-55 | -1.69E-46 |
| MS.gene054222 | MS.gene89706 | 0.820347 | 7.20E-53 | -1.69E-46 |
| MS.gene054957 | MS.gene89706 | 0.822886 | 1.86E-53 | -1.69E-46 |
| MS.gene057102 | MS.gene89706 | 0.80223 | 6.19E-49 | -1.69E-46 |
| MS.gene057155 | MS.gene89706 | 0.814951 | 1.19E-51 | -1.69E-46 |
| MS.gene05781 | MS.gene89706 | 0.826272 | 2.97E-54 | -1.69E-46 |
| MS.gene057999 | MS.gene89706 | 0.819378 | 1.20E-52 | -1.69E-46 |
| MS.gene058279 | MS.gene89706 | 0.819432 | 1.17E-52 | -1.69E-46 |
| MS.gene058592 | MS.gene89706 | 0.822847 | 1.90E-53 | -1.69E-46 |
| MS.gene05952 | MS.gene89706 | 0.835886 | 1.29E-56 | -1.69E-46 |
| MS.gene05985 | MS.gene89706 | -0.810977 | 8.81E-51 | -1.69E-46 |
| MS.gene06018 | MS.gene89706 | 0.948579 | 7.13E-107 | -1.69E-46 |
| MS.gene060933 | MS.gene89706 | 0.806142 | 9.50E-50 | -1.69E-46 |
| MS.gene060935 | MS.gene89706 | 0.81515 | 1.07E-51 | -1.69E-46 |
| MS.gene060937 | MS.gene89706 | 0.82772 | 1.34E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene99972 | MS.gene89706 | PPI |
| MS.gene89706 | MS.gene50106 | PPI |
| MS.gene89706 | MS.gene63084 | PPI |
| MS.gene032713 | MS.gene89706 | PPI |
| MS.gene89706 | MS.gene32487 | PPI |
| MS.gene23035 | MS.gene89706 | PPI |
| MS.gene58553 | MS.gene89706 | PPI |
| MS.gene89706 | MS.gene050914 | PPI |
| MS.gene89706 | MS.gene25326 | PPI |
| MS.gene89706 | MS.gene29552 | PPI |
| MS.gene23125 | MS.gene89706 | PPI |
| MS.gene89706 | MS.gene072506 | PPI |
| MS.gene058508 | MS.gene89706 | PPI |
| MS.gene000895 | MS.gene89706 | PPI |
| MS.gene89706 | MS.gene49664 | PPI |
| MS.gene89706 | MS.gene007026 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89706.t1 | MTR_8g098980 | 99.688 | 321 | 1 | 0 | 1 | 321 | 1 | 321 | 0.0 | 662 |
| MS.gene89706.t1 | MTR_1g079950 | 79.114 | 316 | 64 | 2 | 1 | 315 | 1 | 315 | 0.0 | 541 |
| MS.gene89706.t1 | MTR_1g079950 | 79.114 | 316 | 64 | 2 | 1 | 315 | 30 | 344 | 0.0 | 541 |
| MS.gene89706.t1 | MTR_1g079950 | 79.114 | 316 | 64 | 2 | 1 | 315 | 1 | 315 | 0.0 | 540 |
| MS.gene89706.t1 | MTR_1g079950 | 79.114 | 316 | 64 | 2 | 1 | 315 | 1 | 315 | 0.0 | 540 |
| MS.gene89706.t1 | MTR_7g116380 | 78.165 | 316 | 67 | 2 | 1 | 315 | 1 | 315 | 0.0 | 533 |
| MS.gene89706.t1 | MTR_7g116380 | 78.165 | 316 | 67 | 2 | 1 | 315 | 1 | 315 | 0.0 | 533 |
| MS.gene89706.t1 | MTR_5g081230 | 78.431 | 306 | 66 | 0 | 1 | 306 | 17 | 322 | 0.0 | 523 |
| MS.gene89706.t1 | MTR_1g074880 | 74.603 | 315 | 78 | 2 | 1 | 314 | 1 | 314 | 0.0 | 511 |
| MS.gene89706.t1 | MTR_1g074880 | 74.603 | 315 | 78 | 2 | 1 | 314 | 1 | 314 | 0.0 | 510 |
| MS.gene89706.t1 | MTR_1g043240 | 75.161 | 310 | 75 | 2 | 1 | 309 | 1 | 309 | 2.79e-180 | 501 |
| MS.gene89706.t1 | MTR_7g112870 | 72.500 | 320 | 79 | 3 | 1 | 318 | 5 | 317 | 1.14e-176 | 491 |
| MS.gene89706.t1 | MTR_8g005010 | 77.163 | 289 | 65 | 1 | 6 | 294 | 4 | 291 | 6.35e-174 | 484 |
| MS.gene89706.t1 | MTR_1g079950 | 82.422 | 256 | 44 | 1 | 61 | 315 | 34 | 289 | 1.11e-165 | 464 |
| MS.gene89706.t1 | MTR_1g074880 | 78.516 | 256 | 54 | 1 | 60 | 314 | 4 | 259 | 9.42e-158 | 442 |
| MS.gene89706.t1 | MTR_1g074880 | 78.516 | 256 | 54 | 1 | 60 | 314 | 4 | 259 | 1.03e-157 | 441 |
| MS.gene89706.t1 | MTR_8g085610 | 46.128 | 297 | 150 | 3 | 6 | 301 | 9 | 296 | 2.93e-96 | 287 |
| MS.gene89706.t1 | MTR_7g107310 | 47.826 | 276 | 142 | 2 | 27 | 301 | 27 | 301 | 1.97e-95 | 285 |
| MS.gene89706.t1 | MTR_8g085610 | 47.970 | 271 | 139 | 2 | 32 | 301 | 3 | 272 | 3.09e-94 | 281 |
| MS.gene89706.t1 | MTR_5g037200 | 48.679 | 265 | 134 | 2 | 27 | 290 | 20 | 283 | 1.56e-93 | 280 |
| MS.gene89706.t1 | MTR_8g062430 | 48.302 | 265 | 135 | 2 | 27 | 290 | 20 | 283 | 1.82e-93 | 280 |
| MS.gene89706.t1 | MTR_5g093990 | 44.948 | 287 | 154 | 2 | 27 | 312 | 17 | 300 | 5.77e-93 | 279 |
| MS.gene89706.t1 | MTR_1g039380 | 41.158 | 311 | 168 | 6 | 6 | 314 | 3 | 300 | 5.89e-90 | 271 |
| MS.gene89706.t1 | MTR_1g039380 | 41.935 | 279 | 155 | 4 | 38 | 314 | 3 | 276 | 2.18e-86 | 261 |
| MS.gene89706.t1 | MTR_2g087530 | 50.000 | 272 | 122 | 5 | 23 | 280 | 660 | 931 | 9.60e-82 | 267 |
| MS.gene89706.t1 | MTR_1g089370 | 46.875 | 288 | 135 | 7 | 9 | 279 | 528 | 814 | 1.08e-80 | 262 |
| MS.gene89706.t1 | MTR_2g087530 | 45.603 | 307 | 151 | 6 | 3 | 293 | 525 | 831 | 1.82e-80 | 261 |
| MS.gene89706.t1 | MTR_4g050540 | 45.603 | 307 | 151 | 6 | 3 | 293 | 643 | 949 | 4.27e-80 | 262 |
| MS.gene89706.t1 | MTR_3g452710 | 42.160 | 287 | 155 | 5 | 3 | 283 | 168 | 449 | 3.35e-70 | 226 |
| MS.gene89706.t1 | MTR_3g452710 | 42.160 | 287 | 155 | 5 | 3 | 283 | 235 | 516 | 1.52e-69 | 226 |
| MS.gene89706.t1 | MTR_2g100130 | 38.871 | 319 | 178 | 8 | 3 | 310 | 86 | 398 | 4.49e-68 | 218 |
| MS.gene89706.t1 | MTR_2g100130 | 40.972 | 288 | 158 | 6 | 3 | 283 | 156 | 438 | 6.27e-67 | 217 |
| MS.gene89706.t1 | MTR_2g100130 | 41.404 | 285 | 155 | 6 | 3 | 280 | 195 | 474 | 6.42e-67 | 218 |
| MS.gene89706.t1 | MTR_2g100130 | 41.404 | 285 | 155 | 6 | 3 | 280 | 185 | 464 | 9.37e-67 | 218 |
| MS.gene89706.t1 | MTR_2g100130 | 41.404 | 285 | 155 | 6 | 3 | 280 | 195 | 474 | 1.33e-66 | 218 |
| MS.gene89706.t1 | MTR_2g100130 | 40.972 | 288 | 157 | 7 | 3 | 283 | 156 | 437 | 2.53e-65 | 213 |
| MS.gene89706.t1 | MTR_2g100130 | 41.404 | 285 | 154 | 7 | 3 | 280 | 195 | 473 | 2.60e-65 | 214 |
| MS.gene89706.t1 | MTR_2g100130 | 41.818 | 275 | 148 | 6 | 3 | 270 | 195 | 464 | 4.02e-65 | 213 |
| MS.gene89706.t1 | MTR_2g100160 | 38.438 | 320 | 180 | 9 | 2 | 310 | 104 | 417 | 6.17e-61 | 200 |
| MS.gene89706.t1 | MTR_5g037200 | 50.898 | 167 | 81 | 1 | 27 | 192 | 20 | 186 | 1.12e-59 | 191 |
| MS.gene89706.t1 | MTR_8g072600 | 31.111 | 315 | 152 | 10 | 34 | 283 | 100 | 414 | 8.18e-36 | 134 |
| MS.gene89706.t1 | MTR_8g072600 | 30.677 | 251 | 130 | 7 | 34 | 240 | 100 | 350 | 9.76e-29 | 113 |
| MS.gene89706.t1 | MTR_2g099710 | 28.931 | 318 | 171 | 14 | 32 | 305 | 211 | 517 | 1.28e-21 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89706.t1 | AT1G64040 | 85.266 | 319 | 47 | 0 | 1 | 319 | 1 | 319 | 0.0 | 589 |
| MS.gene89706.t1 | AT4G11240 | 83.438 | 320 | 53 | 0 | 1 | 320 | 1 | 320 | 0.0 | 585 |
| MS.gene89706.t1 | AT2G29400 | 81.457 | 302 | 53 | 2 | 1 | 300 | 15 | 315 | 0.0 | 526 |
| MS.gene89706.t1 | AT2G39840 | 79.070 | 301 | 63 | 0 | 1 | 301 | 14 | 314 | 0.0 | 516 |
| MS.gene89706.t1 | AT5G59160 | 78.146 | 302 | 65 | 1 | 1 | 301 | 9 | 310 | 0.0 | 509 |
| MS.gene89706.t1 | AT5G59160 | 78.146 | 302 | 65 | 1 | 1 | 301 | 9 | 310 | 0.0 | 509 |
| MS.gene89706.t1 | AT5G59160 | 78.146 | 302 | 65 | 1 | 1 | 301 | 9 | 310 | 0.0 | 509 |
| MS.gene89706.t1 | AT3G46820 | 77.152 | 302 | 68 | 1 | 1 | 301 | 9 | 310 | 0.0 | 503 |
| MS.gene89706.t1 | AT5G43380 | 70.717 | 321 | 93 | 1 | 1 | 321 | 1 | 320 | 9.94e-176 | 489 |
| MS.gene89706.t1 | AT5G43380 | 71.519 | 316 | 89 | 1 | 1 | 316 | 1 | 315 | 3.90e-175 | 488 |
| MS.gene89706.t1 | AT5G43380 | 70.717 | 321 | 93 | 1 | 1 | 321 | 1 | 320 | 5.29e-175 | 488 |
| MS.gene89706.t1 | AT5G27840 | 75.338 | 296 | 70 | 1 | 1 | 296 | 9 | 301 | 6.25e-174 | 484 |
| MS.gene89706.t1 | AT5G27840 | 73.786 | 309 | 73 | 2 | 1 | 304 | 9 | 314 | 7.09e-174 | 485 |
| MS.gene89706.t1 | AT5G27840 | 75.338 | 296 | 70 | 1 | 1 | 296 | 9 | 301 | 1.37e-173 | 484 |
| MS.gene89706.t1 | AT5G27840 | 75.338 | 296 | 70 | 1 | 1 | 296 | 9 | 301 | 1.37e-173 | 484 |
| MS.gene89706.t1 | AT3G05580 | 76.014 | 296 | 68 | 1 | 1 | 296 | 9 | 301 | 3.53e-173 | 483 |
| MS.gene89706.t1 | AT3G05580 | 75.304 | 247 | 58 | 1 | 1 | 247 | 9 | 252 | 8.00e-141 | 398 |
| MS.gene89706.t1 | AT2G42500 | 47.138 | 297 | 147 | 3 | 6 | 301 | 14 | 301 | 5.12e-98 | 292 |
| MS.gene89706.t1 | AT3G58500 | 46.465 | 297 | 149 | 3 | 6 | 301 | 14 | 301 | 1.00e-96 | 288 |
| MS.gene89706.t1 | AT5G55260 | 46.739 | 276 | 146 | 1 | 27 | 301 | 17 | 292 | 7.29e-95 | 283 |
| MS.gene89706.t1 | AT1G10430 | 46.503 | 286 | 143 | 3 | 6 | 290 | 7 | 283 | 1.70e-94 | 283 |
| MS.gene89706.t1 | AT1G10430 | 46.503 | 286 | 143 | 3 | 6 | 290 | 7 | 283 | 1.70e-94 | 283 |
| MS.gene89706.t1 | AT1G59830 | 46.853 | 286 | 142 | 3 | 6 | 290 | 7 | 283 | 4.39e-94 | 281 |
| MS.gene89706.t1 | AT1G69960 | 47.547 | 265 | 137 | 2 | 27 | 290 | 21 | 284 | 4.13e-93 | 279 |
| MS.gene89706.t1 | AT4G26720 | 43.310 | 284 | 160 | 1 | 19 | 301 | 9 | 292 | 2.02e-92 | 277 |
| MS.gene89706.t1 | AT1G50370 | 40.453 | 309 | 172 | 5 | 8 | 314 | 2 | 300 | 3.47e-90 | 271 |
| MS.gene89706.t1 | AT3G19980 | 40.453 | 309 | 172 | 5 | 8 | 314 | 2 | 300 | 5.48e-90 | 271 |
| MS.gene89706.t1 | AT5G55260 | 40.694 | 317 | 146 | 2 | 27 | 301 | 17 | 333 | 1.67e-86 | 264 |
| MS.gene89706.t1 | AT1G59830 | 48.400 | 250 | 119 | 3 | 6 | 254 | 7 | 247 | 1.88e-83 | 253 |
| MS.gene89706.t1 | AT2G27210 | 50.000 | 272 | 122 | 5 | 23 | 280 | 666 | 937 | 1.76e-82 | 269 |
| MS.gene89706.t1 | AT2G27210 | 50.000 | 272 | 122 | 5 | 23 | 280 | 671 | 942 | 1.86e-82 | 269 |
| MS.gene89706.t1 | AT1G08420 | 49.632 | 272 | 123 | 5 | 23 | 280 | 677 | 948 | 1.35e-81 | 266 |
| MS.gene89706.t1 | AT1G08420 | 49.632 | 272 | 123 | 5 | 23 | 280 | 682 | 953 | 1.42e-81 | 266 |
| MS.gene89706.t1 | AT4G03080 | 45.364 | 302 | 147 | 7 | 9 | 293 | 530 | 830 | 1.15e-80 | 262 |
| MS.gene89706.t1 | AT2G42500 | 49.327 | 223 | 111 | 2 | 80 | 301 | 33 | 254 | 1.55e-76 | 235 |
| MS.gene89706.t1 | AT1G03445 | 42.857 | 301 | 149 | 8 | 3 | 282 | 446 | 744 | 8.40e-73 | 239 |
| MS.gene89706.t1 | AT1G03445 | 42.857 | 301 | 149 | 8 | 3 | 282 | 446 | 744 | 8.94e-73 | 239 |
| MS.gene89706.t1 | AT2G42810 | 40.702 | 285 | 157 | 5 | 2 | 280 | 170 | 448 | 8.75e-67 | 217 |
| MS.gene89706.t1 | AT2G42810 | 40.702 | 285 | 157 | 5 | 2 | 280 | 170 | 448 | 8.75e-67 | 217 |
| MS.gene89706.t1 | AT2G42810 | 40.702 | 285 | 157 | 5 | 2 | 280 | 170 | 448 | 8.75e-67 | 217 |
| MS.gene89706.t1 | AT2G42810 | 40.702 | 285 | 157 | 5 | 2 | 280 | 224 | 502 | 2.40e-66 | 217 |
| MS.gene89706.t1 | AT2G42810 | 40.702 | 285 | 157 | 5 | 2 | 280 | 223 | 501 | 2.53e-66 | 217 |
| MS.gene89706.t1 | AT2G42500 | 45.238 | 168 | 80 | 3 | 6 | 169 | 14 | 173 | 1.80e-44 | 150 |
| MS.gene89706.t1 | AT2G42500 | 44.571 | 175 | 83 | 4 | 6 | 176 | 14 | 178 | 2.55e-44 | 150 |
| MS.gene89706.t1 | AT2G42500 | 46.250 | 160 | 74 | 3 | 6 | 161 | 14 | 165 | 1.05e-43 | 148 |
| MS.gene89706.t1 | AT5G63870 | 30.303 | 264 | 134 | 7 | 56 | 269 | 79 | 342 | 5.08e-31 | 121 |
| MS.gene89706.t1 | AT5G63870 | 30.303 | 264 | 134 | 7 | 56 | 269 | 79 | 342 | 5.08e-31 | 121 |
| MS.gene89706.t1 | AT5G63870 | 30.000 | 220 | 119 | 5 | 56 | 240 | 79 | 298 | 2.25e-25 | 103 |
| MS.gene89706.t1 | AT1G48120 | 28.477 | 302 | 144 | 8 | 34 | 269 | 630 | 925 | 5.70e-25 | 106 |
| MS.gene89706.t1 | AT5G10900 | 29.885 | 261 | 143 | 10 | 56 | 278 | 225 | 483 | 1.12e-20 | 93.2 |
| MS.gene89706.t1 | AT5G10900 | 29.885 | 261 | 143 | 10 | 56 | 278 | 225 | 483 | 1.36e-20 | 92.8 |
| MS.gene89706.t1 | AT5G10900 | 29.885 | 261 | 143 | 10 | 56 | 278 | 225 | 483 | 1.43e-20 | 92.8 |
Find 71 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTCCATCAATCGTATTTA+TGG | 0.118761 | 4.4:+5092093 | MS.gene89706:CDS |
| GAAGCAAATTACTTATTTCT+TGG | 0.231778 | 4.4:+5091961 | MS.gene89706:CDS |
| TCAAACTCACCACAGTAATT+TGG | 0.239332 | 4.4:-5093058 | None:intergenic |
| ACCTTATGAGGTGGAGTTCC+AGG | 0.245870 | 4.4:-5093190 | None:intergenic |
| CGAGGTGTTTCATTTACATT+TGG | 0.254753 | 4.4:+5092372 | MS.gene89706:CDS |
| TATCGGAAGACTTCAGTATC+TGG | 0.265509 | 4.4:-5093129 | None:intergenic |
| TCCAACTTTGCCCTTCTTAT+CGG | 0.312310 | 4.4:-5093146 | None:intergenic |
| CCATGATCTGGCACATCAAT+AGG | 0.319380 | 4.4:-5092285 | None:intergenic |
| AGAAATAAGTAATTTGCTTC+AGG | 0.320791 | 4.4:-5091958 | None:intergenic |
| GAGGTGTTTCATTTACATTT+GGG | 0.340319 | 4.4:+5092373 | MS.gene89706:CDS |
| TGATTGCTTTAATTGTTTAC+CGG | 0.357293 | 4.4:+5092170 | MS.gene89706:CDS |
| GCTTCAAGTTCAAGAAGATT+AGG | 0.359782 | 4.4:-5090723 | None:intergenic |
| AAGAAGGGCAAAGTTGGATT+TGG | 0.364950 | 4.4:+5093151 | MS.gene89706:CDS |
| CGTATTCGAACAGCCTTAAA+AGG | 0.372745 | 4.4:-5091924 | None:intergenic |
| AGGAGAACTTCTTTCTTCTC+AGG | 0.373373 | 4.4:+5092055 | MS.gene89706:CDS |
| GCCTTCTCTGCGACCTTCTG+TGG | 0.394394 | 4.4:+5092307 | MS.gene89706:CDS |
| GCCTTAAAAGGTCTGAAAAC+TGG | 0.396799 | 4.4:-5091912 | None:intergenic |
| CATCCCTCAAGATCTTTATC+AGG | 0.398758 | 4.4:-5092336 | None:intergenic |
| GATTGATGGAGGCGCATTCA+TGG | 0.439246 | 4.4:-5092083 | None:intergenic |
| GAAACCATAAATACGATTGA+TGG | 0.442568 | 4.4:-5092097 | None:intergenic |
| TACAGTCACCAGCTTACGTT+TGG | 0.445882 | 4.4:-5093026 | None:intergenic |
| ACCTGGAACTCCACCTCATA+AGG | 0.452558 | 4.4:+5093189 | MS.gene89706:CDS |
| CATGATCTGGCACATCAATA+GGG | 0.454758 | 4.4:-5092284 | None:intergenic |
| GAAGCTCCTATCAAAATTTG+TGG | 0.455039 | 4.4:+5090741 | MS.gene89706:CDS |
| CCTATTGATGTGCCAGATCA+TGG | 0.458791 | 4.4:+5092285 | MS.gene89706:CDS |
| GGAGGTATAATGTTCGTCTC+TGG | 0.469205 | 4.4:+5092136 | MS.gene89706:CDS |
| CCCACAGAAGGTCGCAGAGA+AGG | 0.474160 | 4.4:-5092308 | None:intergenic |
| ACTGAAGTCTTCCGATAAGA+AGG | 0.476810 | 4.4:+5093135 | MS.gene89706:CDS |
| AGAAGATCCTTTGCATGCAT+GGG | 0.477596 | 4.4:+5092211 | MS.gene89706:CDS |
| TCGCAGAGAAGGCCATGATC+TGG | 0.483085 | 4.4:-5092297 | None:intergenic |
| TCCGATAAGAAGGGCAAAGT+TGG | 0.484368 | 4.4:+5093145 | MS.gene89706:CDS |
| GGAGAACTTCTTTCTTCTCA+GGG | 0.491751 | 4.4:+5092056 | MS.gene89706:CDS |
| AATAAGTAATTTGCTTCAGG+TGG | 0.494184 | 4.4:-5091955 | None:intergenic |
| TGATAAAGATCTTGAGGGAT+GGG | 0.495424 | 4.4:+5092338 | MS.gene89706:CDS |
| GCGTCTCAGGTTGTAGAAGA+TGG | 0.496210 | 4.4:+5092989 | MS.gene89706:intron |
| GAGAAGATCCTTTGCATGCA+TGG | 0.497979 | 4.4:+5092210 | MS.gene89706:CDS |
| TCAGCTTTGTACTTCTGCTA+AGG | 0.513143 | 4.4:+5090683 | MS.gene89706:CDS |
| TCTCTTGGAGATGGATGATA+CGG | 0.513600 | 4.4:+5090575 | None:intergenic |
| CCTTCTCTGCGACCTTCTGT+GGG | 0.527902 | 4.4:+5092308 | MS.gene89706:CDS |
| TTTAAGGCTGTTCGAATACG+GGG | 0.546220 | 4.4:+5091927 | MS.gene89706:CDS |
| TGATCCTGATAAAGATCTTG+AGG | 0.546600 | 4.4:+5092332 | MS.gene89706:CDS |
| ATTTACATTTGGGGCTGACA+AGG | 0.548915 | 4.4:+5092383 | MS.gene89706:CDS |
| AAAGGTCTGAAAACTGGCCA+TGG | 0.549539 | 4.4:-5091906 | None:intergenic |
| TCTGATATGTAGAGCTCACC+AGG | 0.551295 | 4.4:+5092437 | MS.gene89706:CDS |
| CTGATAAAGATCTTGAGGGA+TGG | 0.553149 | 4.4:+5092337 | MS.gene89706:CDS |
| AGGTGTTTCATTTACATTTG+GGG | 0.560742 | 4.4:+5092374 | MS.gene89706:CDS |
| TTGTTTGCAGGAGATGTCCA+TGG | 0.568088 | 4.4:+5091889 | MS.gene89706:intron |
| TCGTCTACTAGAGCAGCAAC+CGG | 0.568940 | 4.4:-5092189 | None:intergenic |
| TGCATATAAAATCAAATACA+AGG | 0.570871 | 4.4:+5092035 | MS.gene89706:CDS |
| TGTGGTGAGTTTGATAATGC+CGG | 0.578788 | 4.4:+5093067 | MS.gene89706:CDS |
| GATCCTGATAAAGATCTTGA+GGG | 0.581991 | 4.4:+5092333 | MS.gene89706:CDS |
| CTTGGAGATTATGTTGATCG+TGG | 0.584311 | 4.4:+5091979 | MS.gene89706:CDS |
| ATCCACACTCATCATAGCAC+CGG | 0.591401 | 4.4:-5093086 | None:intergenic |
| GGCAATAACTCATCAAGACC+TGG | 0.595098 | 4.4:+5093172 | MS.gene89706:CDS |
| GAAGATCCTTTGCATGCATG+GGG | 0.598475 | 4.4:+5092212 | MS.gene89706:CDS |
| TATCAGGATCAGCCCACAGA+AGG | 0.599205 | 4.4:-5092320 | None:intergenic |
| CTGAAGTCTTCCGATAAGAA+GGG | 0.604771 | 4.4:+5093136 | MS.gene89706:CDS |
| GATAAAGATCTTGAGGGATG+GGG | 0.613478 | 4.4:+5092339 | MS.gene89706:CDS |
| ATAAGTAATTTGCTTCAGGT+GGG | 0.616465 | 4.4:-5091954 | None:intergenic |
| GGATGGGGAGAAAATGATCG+AGG | 0.631648 | 4.4:+5092354 | MS.gene89706:CDS |
| AAGCTTGTATCAGCGAAGAA+CGG | 0.636419 | 4.4:+5090618 | MS.gene89706:CDS |
| GTTTCTACGATGAGTGCAAG+AGG | 0.643121 | 4.4:+5092115 | MS.gene89706:CDS |
| AAGCTGACGAATATCAGCCT+CGG | 0.647938 | 4.4:-5090667 | None:intergenic |
| ACCATAAATACGATTGATGG+AGG | 0.650130 | 4.4:-5092094 | None:intergenic |
| GAGAACTTCTTTCTTCTCAG+GGG | 0.674269 | 4.4:+5092057 | MS.gene89706:CDS |
| TGCCGGTGCTATGATGAGTG+TGG | 0.686901 | 4.4:+5093084 | MS.gene89706:CDS |
| TTAAGGCTGTTCGAATACGG+GGG | 0.692495 | 4.4:+5091928 | MS.gene89706:CDS |
| TCTACGATGAGTGCAAGAGG+AGG | 0.698302 | 4.4:+5092118 | MS.gene89706:CDS |
| TTCTCTGCACCAAATTACTG+TGG | 0.705308 | 4.4:+5093049 | MS.gene89706:CDS |
| AAGATCCTTTGCATGCATGG+GGG | 0.732102 | 4.4:+5092213 | MS.gene89706:CDS |
| GAAGCAAGTTCATCTTACCG+AGG | 0.743441 | 4.4:+5090650 | MS.gene89706:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATTTATGTAATTGAAT+TGG | + | chr4.4:5090859-5090878 | MS.gene89706:intron | 10.0% |
| !!! | AACTCATAAATTTTAATTTT+AGG | + | chr4.4:5091494-5091513 | MS.gene89706:intron | 10.0% |
| !!! | ACTCATAAATTTTAATTTTA+GGG | + | chr4.4:5091495-5091514 | MS.gene89706:intron | 10.0% |
| !! | ACAAGTTTAAAAACTATTAA+TGG | + | chr4.4:5093863-5093882 | MS.gene89706:intron | 15.0% |
| !! | TATATAAATCTACACAAAAT+CGG | - | chr4.4:5093638-5093657 | None:intergenic | 15.0% |
| !! | TATTTATAATGATAATTGAG+CGG | + | chr4.4:5092628-5092647 | MS.gene89706:intron | 15.0% |
| !!! | ATGTTTCCTTTTAATATTTT+GGG | + | chr4.4:5092962-5092981 | MS.gene89706:intron | 15.0% |
| !!! | CATTCATATTTTTAACAAAA+TGG | - | chr4.4:5091710-5091729 | None:intergenic | 15.0% |
| !! | AAACTTATTGTATATACAGA+CGG | - | chr4.4:5092547-5092566 | None:intergenic | 20.0% |
| !! | ATAAATCTATACACAAAATC+AGG | - | chr4.4:5093422-5093441 | None:intergenic | 20.0% |
| !! | CTATTTATAAATTATAGCCA+AGG | - | chr4.4:5092522-5092541 | None:intergenic | 20.0% |
| !! | TGCATATAAAATCAAATACA+AGG | + | chr4.4:5092035-5092054 | MS.gene89706:CDS | 20.0% |
| !!! | AGTTCTGTTAATTTTAATTG+GGG | + | chr4.4:5090893-5090912 | MS.gene89706:intron | 20.0% |
| !!! | CAGTTCTGTTAATTTTAATT+GGG | + | chr4.4:5090892-5090911 | MS.gene89706:intron | 20.0% |
| !!! | CATTATATTTTTACCTTATG+AGG | - | chr4.4:5093205-5093224 | None:intergenic | 20.0% |
| !!! | GATGTTTCCTTTTAATATTT+TGG | + | chr4.4:5092961-5092980 | MS.gene89706:intron | 20.0% |
| !!! | TCATACACTTTTTTAATGAA+TGG | + | chr4.4:5091006-5091025 | MS.gene89706:intron | 20.0% |
| !!! | TGTATTTGATTTTATATGCA+AGG | - | chr4.4:5092035-5092054 | None:intergenic | 20.0% |
| !!! | TGTTTCCTTTTAATATTTTG+GGG | + | chr4.4:5092963-5092982 | MS.gene89706:intron | 20.0% |
| !!! | TTTTTAAACTTGTCTTAACT+TGG | - | chr4.4:5093856-5093875 | None:intergenic | 20.0% |
| ! | AAAAAAAAAAAGCTTCCTGT+GGG | + | chr4.4:5094039-5094058 | MS.gene89706:intron | 25.0% |
| ! | AAAAAGAGGTAGTTAAACAA+AGG | - | chr4.4:5092817-5092836 | None:intergenic | 25.0% |
| ! | ACATAAATCTACACAAAATC+AGG | - | chr4.4:5093744-5093763 | None:intergenic | 25.0% |
| ! | GATTCTATGTATATGTGTAT+GGG | + | chr4.4:5093261-5093280 | MS.gene89706:intron | 25.0% |
| ! | TAACAAAATGGAAAAGCTTT+AGG | - | chr4.4:5091698-5091717 | None:intergenic | 25.0% |
| ! | TATGAAACTTCTGAATTCTT+TGG | - | chr4.4:5093545-5093564 | None:intergenic | 25.0% |
| ! | TGATTCTATGTATATGTGTA+TGG | + | chr4.4:5093260-5093279 | MS.gene89706:intron | 25.0% |
| ! | TGATTGCTTTAATTGTTTAC+CGG | + | chr4.4:5092170-5092189 | MS.gene89706:CDS | 25.0% |
| ! | TTAAAAACTTGGATCAGATA+CGG | + | chr4.4:5092250-5092269 | MS.gene89706:CDS | 25.0% |
| ! | TTATAAATTATAGCCAAGGA+TGG | - | chr4.4:5092518-5092537 | None:intergenic | 25.0% |
| ! | TTATGTAATTGAATTGGTAG+TGG | + | chr4.4:5090865-5090884 | MS.gene89706:intron | 25.0% |
| ! | TTGTGATATTTAATGAGTTC+TGG | + | chr4.4:5094215-5094234 | MS.gene89706:intron | 25.0% |
| !! | GAAGCAAATTACTTATTTCT+TGG | + | chr4.4:5091961-5091980 | MS.gene89706:CDS | 25.0% |
| !! | TTGGGTTTATCTCAAATTTT+TGG | + | chr4.4:5091392-5091411 | MS.gene89706:intron | 25.0% |
| !!! | AAGATACCACAAATTTTGAT+AGG | - | chr4.4:5090750-5090769 | None:intergenic | 25.0% |
| !!! | ACAGGAAGCTTTTTTTTTTT+GGG | - | chr4.4:5094039-5094058 | None:intergenic | 25.0% |
| !!! | AGAAATAAGTAATTTGCTTC+AGG | - | chr4.4:5091961-5091980 | None:intergenic | 25.0% |
| !!! | GCAGTTCTGTTAATTTTAAT+TGG | + | chr4.4:5090891-5090910 | MS.gene89706:intron | 25.0% |
| !!! | GTTTCCTTTTAATATTTTGG+GGG | + | chr4.4:5092964-5092983 | MS.gene89706:intron | 25.0% |
| !!! | TATATTTTTACCTTATGAGG+TGG | - | chr4.4:5093202-5093221 | None:intergenic | 25.0% |
| !!! | TTGAGTTGAATTTGTTTTTG+TGG | + | chr4.4:5091070-5091089 | MS.gene89706:intron | 25.0% |
| !!! | TTGGACACTTTAATTTTGAT+GGG | - | chr4.4:5093893-5093912 | None:intergenic | 25.0% |
| !!! | TTGTTTTTGTGGTTTTTGAT+AGG | + | chr4.4:5091081-5091100 | MS.gene89706:intron | 25.0% |
| !!! | TTTGGACACTTTAATTTTGA+TGG | - | chr4.4:5093894-5093913 | None:intergenic | 25.0% |
| AAAAAGAGATTCAACGTTCA+CGG | + | chr4.4:5093911-5093930 | MS.gene89706:intron | 30.0% | |
| AAAATGGTGAATTGTGTCTA+TGG | - | chr4.4:5093944-5093963 | None:intergenic | 30.0% | |
| AAACATCAGATCAGATTTAC+TGG | - | chr4.4:5092948-5092967 | None:intergenic | 30.0% | |
| AGGTGTTTCATTTACATTTG+GGG | + | chr4.4:5092374-5092393 | MS.gene89706:CDS | 30.0% | |
| AGTAAAGGATATGACAAAGT+TGG | + | chr4.4:5092684-5092703 | MS.gene89706:intron | 30.0% | |
| ATTCTATGTATATGTGCATG+GGG | + | chr4.4:5093472-5093491 | MS.gene89706:intron | 30.0% | |
| ATTGAAATTAACCAAGCTAC+AGG | - | chr4.4:5092471-5092490 | None:intergenic | 30.0% | |
| CAAAAAAAAAAAGCTTCCTG+TGG | + | chr4.4:5094038-5094057 | MS.gene89706:intron | 30.0% | |
| CATGTTATCAACTTATCATC+AGG | + | chr4.4:5091664-5091683 | MS.gene89706:intron | 30.0% | |
| GAAACCATAAATACGATTGA+TGG | - | chr4.4:5092100-5092119 | None:intergenic | 30.0% | |
| GATTCTATGTATATGTGCAT+GGG | + | chr4.4:5093471-5093490 | MS.gene89706:intron | 30.0% | |
| GTAAAGGATATGACAAAGTT+GGG | + | chr4.4:5092685-5092704 | MS.gene89706:intron | 30.0% | |
| TGATTCTATGTATATGTGCA+TGG | + | chr4.4:5093470-5093489 | MS.gene89706:intron | 30.0% | |
| TTATATATTTGTCTGTGTGC+TGG | + | chr4.4:5092874-5092893 | MS.gene89706:intron | 30.0% | |
| TTATTTGTGTTTCCACATTG+CGG | + | chr4.4:5091175-5091194 | MS.gene89706:intron | 30.0% | |
| TTCTCCTGAACTTAAAAACT+TGG | + | chr4.4:5092239-5092258 | MS.gene89706:CDS | 30.0% | |
| TTGAAATTAACCAAGCTACA+GGG | - | chr4.4:5092470-5092489 | None:intergenic | 30.0% | |
| ! | AAGTTTCATGTCACTTAAGT+TGG | + | chr4.4:5093374-5093393 | MS.gene89706:intron | 30.0% |
| ! | GAGGTGTTTCATTTACATTT+GGG | + | chr4.4:5092373-5092392 | MS.gene89706:CDS | 30.0% |
| ! | GGTTTAAACAATTTGTTTGC+AGG | + | chr4.4:5091877-5091896 | MS.gene89706:intron | 30.0% |
| ! | GTTTTCTTCAGACAATTAAG+TGG | + | chr4.4:5091112-5091131 | MS.gene89706:intron | 30.0% |
| ! | TGGTTTTTGATAGGATTGTT+TGG | + | chr4.4:5091090-5091109 | MS.gene89706:intron | 30.0% |
| !! | AATAAGTAATTTGCTTCAGG+TGG | - | chr4.4:5091958-5091977 | None:intergenic | 30.0% |
| !! | ATAAGTAATTTGCTTCAGGT+GGG | - | chr4.4:5091957-5091976 | None:intergenic | 30.0% |
| !! | ATTGCTTTAGAGAAACATCT+TGG | + | chr4.4:5093811-5093830 | MS.gene89706:intron | 30.0% |
| !! | TTGCTTTAGAGAAACATCTT+GGG | + | chr4.4:5093812-5093831 | MS.gene89706:intron | 30.0% |
| !!! | AAGCTTTTTTTTTTTGGGTG+GGG | - | chr4.4:5094034-5094053 | None:intergenic | 30.0% |
| !!! | CACAGGAAGCTTTTTTTTTT+TGG | - | chr4.4:5094040-5094059 | None:intergenic | 30.0% |
| !!! | CACTTTTTTAATGAATGGCT+AGG | + | chr4.4:5091011-5091030 | MS.gene89706:intron | 30.0% |
| !!! | CTGTTAATTTTAATTGGGGT+CGG | + | chr4.4:5090897-5090916 | MS.gene89706:intron | 30.0% |
| !!! | GAAGCTTTTTTTTTTTGGGT+GGG | - | chr4.4:5094035-5094054 | None:intergenic | 30.0% |
| !!! | TGATCCAAGTTTTTAAGTTC+AGG | - | chr4.4:5092246-5092265 | None:intergenic | 30.0% |
| !!! | TGTTAATTTTAATTGGGGTC+GGG | + | chr4.4:5090898-5090917 | MS.gene89706:intron | 30.0% |
| !!! | TTTTAATTTTAGGGATGCAG+TGG | + | chr4.4:5091504-5091523 | MS.gene89706:intron | 30.0% |
| AAAAGAGATTCAACGTTCAC+GGG | + | chr4.4:5093912-5093931 | MS.gene89706:intron | 35.0% | |
| AAAAGCAAAATAGGACCTGA+AGG | - | chr4.4:5091829-5091848 | None:intergenic | 35.0% | |
| ACACACAACATAATGAGACA+AGG | - | chr4.4:5091799-5091818 | None:intergenic | 35.0% | |
| ACAGTGGTCAAAAGCAAAAT+AGG | - | chr4.4:5091838-5091857 | None:intergenic | 35.0% | |
| ACCATAAATACGATTGATGG+AGG | - | chr4.4:5092097-5092116 | None:intergenic | 35.0% | |
| ACTAAACTGATTGACAACCA+AGG | - | chr4.4:5091275-5091294 | None:intergenic | 35.0% | |
| AGAAGTTTCACAACTTCTAC+TGG | + | chr4.4:5093689-5093708 | MS.gene89706:intron | 35.0% | |
| CTAAACTGATTGACAACCAA+GGG | - | chr4.4:5091274-5091293 | None:intergenic | 35.0% | |
| GAAGCTCCTATCAAAATTTG+TGG | + | chr4.4:5090741-5090760 | MS.gene89706:CDS | 35.0% | |
| GAGAAAGACTACATGAGTAA+AGG | + | chr4.4:5092669-5092688 | MS.gene89706:intron | 35.0% | |
| GATCCTGATAAAGATCTTGA+GGG | + | chr4.4:5092333-5092352 | MS.gene89706:CDS | 35.0% | |
| GTCATCTGTAAGTGTTAAAC+TGG | + | chr4.4:5091856-5091875 | MS.gene89706:intron | 35.0% | |
| TAAACTGATTGACAACCAAG+GGG | - | chr4.4:5091273-5091292 | None:intergenic | 35.0% | |
| TCAAACTCACCACAGTAATT+TGG | - | chr4.4:5093061-5093080 | None:intergenic | 35.0% | |
| TGATAAAGATCTTGAGGGAT+GGG | + | chr4.4:5092338-5092357 | MS.gene89706:CDS | 35.0% | |
| TGATCCTGATAAAGATCTTG+AGG | + | chr4.4:5092332-5092351 | MS.gene89706:CDS | 35.0% | |
| TTAACACTTACAGATGACAG+TGG | - | chr4.4:5091854-5091873 | None:intergenic | 35.0% | |
| TTCTATGTATATGTGCATGG+GGG | + | chr4.4:5093473-5093492 | MS.gene89706:intron | 35.0% | |
| TTCTTTCTTCTGTGAATTCC+CGG | + | chr4.4:5091314-5091333 | MS.gene89706:intron | 35.0% | |
| ! | ACCATTTTCTTGTGGTTTCT+AGG | + | chr4.4:5093956-5093975 | MS.gene89706:intron | 35.0% |
| ! | ACGGGTCGACTAAAATTTTT+AGG | + | chr4.4:5094087-5094106 | MS.gene89706:intron | 35.0% |
| ! | AGGGGTATATAAGTGAGAAA+TGG | + | chr4.4:5093976-5093995 | MS.gene89706:intron | 35.0% |
| ! | CACAATTCACCATTTTCTTG+TGG | + | chr4.4:5093948-5093967 | MS.gene89706:intron | 35.0% |
| ! | CCATTTTCTTGTGGTTTCTA+GGG | + | chr4.4:5093957-5093976 | MS.gene89706:intron | 35.0% |
| ! | CGAGGTGTTTCATTTACATT+TGG | + | chr4.4:5092372-5092391 | MS.gene89706:CDS | 35.0% |
| ! | GCTTCAAGTTCAAGAAGATT+AGG | - | chr4.4:5090726-5090745 | None:intergenic | 35.0% |
| ! | GTGAACGTTGAATCTCTTTT+TGG | - | chr4.4:5093912-5093931 | None:intergenic | 35.0% |
| ! | TCTTAACTTGGTAACAGCAT+AGG | - | chr4.4:5093844-5093863 | None:intergenic | 35.0% |
| ! | TTTAATTAAAGCGGCACTGA+GGG | + | chr4.4:5090932-5090951 | MS.gene89706:intron | 35.0% |
| ! | TTTTGCACATACTGTGGTTT+TGG | + | chr4.4:5091601-5091620 | MS.gene89706:intron | 35.0% |
| !! | AGTAAGAGTGTGTTTGGTTT+TGG | - | chr4.4:5091638-5091657 | None:intergenic | 35.0% |
| !! | CATTTTCTTGTGGTTTCTAG+GGG | + | chr4.4:5093958-5093977 | MS.gene89706:intron | 35.0% |
| !! | CTCTAAAGTAAGAGTGTGTT+TGG | - | chr4.4:5091644-5091663 | None:intergenic | 35.0% |
| !! | TGCATGTTTGATTTGACGTT+TGG | + | chr4.4:5091534-5091553 | MS.gene89706:intron | 35.0% |
| !! | TTTTAATTAAAGCGGCACTG+AGG | + | chr4.4:5090931-5090950 | MS.gene89706:intron | 35.0% |
| !!! | CTTTTAAGGCTGTTCGAATA+CGG | + | chr4.4:5091925-5091944 | MS.gene89706:CDS | 35.0% |
| !!! | GGAAGCTTTTTTTTTTTGGG+TGG | - | chr4.4:5094036-5094055 | None:intergenic | 35.0% |
| !!! | TTTAGCTTTTGCACATACTG+TGG | + | chr4.4:5091595-5091614 | MS.gene89706:intron | 35.0% |
| !!! | TTTTAAGGCTGTTCGAATAC+GGG | + | chr4.4:5091926-5091945 | MS.gene89706:CDS | 35.0% |
| !!! | TTTTTTTTTTTGGGTGGGGA+GGG | - | chr4.4:5094030-5094049 | None:intergenic | 35.0% |
| AAAAGCCCACTTATCTAACG+TGG | + | chr4.4:5091470-5091489 | MS.gene89706:intron | 40.0% | |
| AAACCCAAAAACACACCACA+AGG | - | chr4.4:5091380-5091399 | None:intergenic | 40.0% | |
| AAAGTCCCAGATCATGGTTT+GGG | + | chr4.4:5091557-5091576 | MS.gene89706:intron | 40.0% | |
| AAGAAGGGCAAAGTTGGATT+TGG | + | chr4.4:5093151-5093170 | MS.gene89706:CDS | 40.0% | |
| AAGCTTGTATCAGCGAAGAA+CGG | + | chr4.4:5090618-5090637 | MS.gene89706:CDS | 40.0% | |
| ACCCTGGAATAACAGGTATA+TGG | - | chr4.4:5094241-5094260 | None:intergenic | 40.0% | |
| ACTGAAGTCTTCCGATAAGA+AGG | + | chr4.4:5093135-5093154 | MS.gene89706:CDS | 40.0% | |
| AGAAATGGCTATGCTCTTTG+GGG | + | chr4.4:5093991-5094010 | MS.gene89706:intron | 40.0% | |
| AGAAGATCCTTTGCATGCAT+GGG | + | chr4.4:5092211-5092230 | MS.gene89706:CDS | 40.0% | |
| AGACAAGGCAATCAAACTAG+GGG | - | chr4.4:5091784-5091803 | None:intergenic | 40.0% | |
| AGGAGAACTTCTTTCTTCTC+AGG | + | chr4.4:5092055-5092074 | MS.gene89706:CDS | 40.0% | |
| AGTATCTCTTCCTGTTGAGA+TGG | + | chr4.4:5091243-5091262 | MS.gene89706:intron | 40.0% | |
| AGTTGCCACGTTAGATAAGT+GGG | - | chr4.4:5091478-5091497 | None:intergenic | 40.0% | |
| ATATACCTGTTATTCCAGGG+TGG | + | chr4.4:5094240-5094259 | MS.gene89706:intron | 40.0% | |
| ATCTCAACAGGAAGAGATAC+TGG | - | chr4.4:5091244-5091263 | None:intergenic | 40.0% | |
| ATGCACAACACGACTGAATA+TGG | + | chr4.4:5092764-5092783 | MS.gene89706:intron | 40.0% | |
| ATTATAGCCAAGGATGGCAT+TGG | - | chr4.4:5092512-5092531 | None:intergenic | 40.0% | |
| CAGTATGTTCCTGACATAAG+GGG | - | chr4.4:5091357-5091376 | None:intergenic | 40.0% | |
| CATCCCTCAAGATCTTTATC+AGG | - | chr4.4:5092339-5092358 | None:intergenic | 40.0% | |
| CATGATCTGGCACATCAATA+GGG | - | chr4.4:5092287-5092306 | None:intergenic | 40.0% | |
| CCCTAGAAACCACAAGAAAA+TGG | - | chr4.4:5093960-5093979 | None:intergenic | 40.0% | |
| CGTATTCGAACAGCCTTAAA+AGG | - | chr4.4:5091927-5091946 | None:intergenic | 40.0% | |
| CTGAAGTCTTCCGATAAGAA+GGG | + | chr4.4:5093136-5093155 | MS.gene89706:CDS | 40.0% | |
| CTGATAAAGATCTTGAGGGA+TGG | + | chr4.4:5092337-5092356 | MS.gene89706:CDS | 40.0% | |
| CTTGGAGATTATGTTGATCG+TGG | + | chr4.4:5091979-5091998 | MS.gene89706:CDS | 40.0% | |
| GAGAAATGGCTATGCTCTTT+GGG | + | chr4.4:5093990-5094009 | MS.gene89706:intron | 40.0% | |
| GAGAACTTCTTTCTTCTCAG+GGG | + | chr4.4:5092057-5092076 | MS.gene89706:CDS | 40.0% | |
| GAGACAAGGCAATCAAACTA+GGG | - | chr4.4:5091785-5091804 | None:intergenic | 40.0% | |
| GATAAAGATCTTGAGGGATG+GGG | + | chr4.4:5092339-5092358 | MS.gene89706:CDS | 40.0% | |
| GCAGCCCCCAAAATATTAAA+AGG | - | chr4.4:5092971-5092990 | None:intergenic | 40.0% | |
| GCAGTATGTTCCTGACATAA+GGG | - | chr4.4:5091358-5091377 | None:intergenic | 40.0% | |
| GCCATATACCTGTTATTCCA+GGG | + | chr4.4:5094237-5094256 | MS.gene89706:intron | 40.0% | |
| GCCTCCATCAATCGTATTTA+TGG | + | chr4.4:5092093-5092112 | MS.gene89706:CDS | 40.0% | |
| GCCTTAAAAGGTCTGAAAAC+TGG | - | chr4.4:5091915-5091934 | None:intergenic | 40.0% | |
| GGAGAACTTCTTTCTTCTCA+GGG | + | chr4.4:5092056-5092075 | MS.gene89706:CDS | 40.0% | |
| GTATCTCTTCCTGTTGAGAT+GGG | + | chr4.4:5091244-5091263 | MS.gene89706:intron | 40.0% | |
| TAGTCGACCCGTATACATAA+GGG | - | chr4.4:5094079-5094098 | None:intergenic | 40.0% | |
| TATACCTGTTATTCCAGGGT+GGG | + | chr4.4:5094241-5094260 | MS.gene89706:intron | 40.0% | |
| TATCGGAAGACTTCAGTATC+TGG | - | chr4.4:5093132-5093151 | None:intergenic | 40.0% | |
| TCCAACTTTGCCCTTCTTAT+CGG | - | chr4.4:5093149-5093168 | None:intergenic | 40.0% | |
| TGAGAAATGGCTATGCTCTT+TGG | + | chr4.4:5093989-5094008 | MS.gene89706:intron | 40.0% | |
| TGAGACAAGGCAATCAAACT+AGG | - | chr4.4:5091786-5091805 | None:intergenic | 40.0% | |
| TGCTTCTTTCGACACTTCTT+TGG | + | chr4.4:5091043-5091062 | MS.gene89706:intron | 40.0% | |
| TTAGTCGACCCGTATACATA+AGG | - | chr4.4:5094080-5094099 | None:intergenic | 40.0% | |
| TTCCGTAAACCAGATACTCA+AGG | - | chr4.4:5091745-5091764 | None:intergenic | 40.0% | |
| TTCTCTGCACCAAATTACTG+TGG | + | chr4.4:5093049-5093068 | MS.gene89706:CDS | 40.0% | |
| TTGTGTGTGTATCTTCCTTC+AGG | + | chr4.4:5091811-5091830 | MS.gene89706:intron | 40.0% | |
| ! | ATTGGGATTTTGCTTCGCTT+AGG | + | chr4.4:5092900-5092919 | MS.gene89706:intron | 40.0% |
| ! | ATTTACATTTGGGGCTGACA+AGG | + | chr4.4:5092383-5092402 | MS.gene89706:CDS | 40.0% |
| ! | CACCTTGAGTATCTGGTTTA+CGG | + | chr4.4:5091740-5091759 | MS.gene89706:intron | 40.0% |
| ! | GCCAGTTTTCAGACCTTTTA+AGG | + | chr4.4:5091911-5091930 | MS.gene89706:CDS | 40.0% |
| ! | TCAGCTTTGTACTTCTGCTA+AGG | + | chr4.4:5090683-5090702 | MS.gene89706:CDS | 40.0% |
| ! | TTGGGATTTTGCTTCGCTTA+GGG | + | chr4.4:5092901-5092920 | MS.gene89706:intron | 40.0% |
| ! | TTTAAGGCTGTTCGAATACG+GGG | + | chr4.4:5091927-5091946 | MS.gene89706:CDS | 40.0% |
| ! | TTTTGCCCAAACCATGATCT+GGG | - | chr4.4:5091565-5091584 | None:intergenic | 40.0% |
| !! | TCAGTTTAGTTTGAAACCCC+TGG | + | chr4.4:5091285-5091304 | MS.gene89706:intron | 40.0% |
| !! | TGTGGTGAGTTTGATAATGC+CGG | + | chr4.4:5093067-5093086 | MS.gene89706:CDS | 40.0% |
| !!! | CTTTTTTTTTTTGGGTGGGG+AGG | - | chr4.4:5094031-5094050 | None:intergenic | 40.0% |
| !!! | GTGTGTTTGGTTTTGGCATT+CGG | - | chr4.4:5091631-5091650 | None:intergenic | 40.0% |
| !!! | GTTTTTTGCCAAACGTAAGC+TGG | + | chr4.4:5093018-5093037 | MS.gene89706:CDS | 40.0% |
| !!! | TTTTTTTTTTGGGTGGGGAG+GGG | - | chr4.4:5094029-5094048 | None:intergenic | 40.0% |
| AAAGGTCTGAAAACTGGCCA+TGG | - | chr4.4:5091909-5091928 | None:intergenic | 45.0% | |
| AAGATCCTTTGCATGCATGG+GGG | + | chr4.4:5092213-5092232 | MS.gene89706:CDS | 45.0% | |
| AAGCTACAGGGTTCATTACC+TGG | - | chr4.4:5092458-5092477 | None:intergenic | 45.0% | |
| AAGCTGACGAATATCAGCCT+CGG | - | chr4.4:5090670-5090689 | None:intergenic | 45.0% | |
| AATTGAGCGGTGAGACTTGA+AGG | + | chr4.4:5092641-5092660 | MS.gene89706:intron | 45.0% | |
| ACAAGGCAATCAAACTAGGG+GGG | - | chr4.4:5091782-5091801 | None:intergenic | 45.0% | |
| AGAAGAAAGAAGCTCGACCA+GGG | - | chr4.4:5091305-5091324 | None:intergenic | 45.0% | |
| AGGTAATGAACCCTGTAGCT+TGG | + | chr4.4:5092457-5092476 | MS.gene89706:intron | 45.0% | |
| ATCCACACTCATCATAGCAC+CGG | - | chr4.4:5093089-5093108 | None:intergenic | 45.0% | |
| CCATGATCTGGCACATCAAT+AGG | - | chr4.4:5092288-5092307 | None:intergenic | 45.0% | |
| CCTATTGATGTGCCAGATCA+TGG | + | chr4.4:5092285-5092304 | MS.gene89706:CDS | 45.0% | |
| CTGAGGCTGTATGAGATAGA+AGG | + | chr4.4:5091216-5091235 | MS.gene89706:intron | 45.0% | |
| CTTCTGTGAATTCCCGGTTT+AGG | + | chr4.4:5091320-5091339 | MS.gene89706:intron | 45.0% | |
| GAAAGTCCCAGATCATGGTT+TGG | + | chr4.4:5091556-5091575 | MS.gene89706:intron | 45.0% | |
| GAAGATCCTTTGCATGCATG+GGG | + | chr4.4:5092212-5092231 | MS.gene89706:CDS | 45.0% | |
| GAAGCAAGTTCATCTTACCG+AGG | + | chr4.4:5090650-5090669 | MS.gene89706:CDS | 45.0% | |
| GACAAGGCAATCAAACTAGG+GGG | - | chr4.4:5091783-5091802 | None:intergenic | 45.0% | |
| GAGAAGATCCTTTGCATGCA+TGG | + | chr4.4:5092210-5092229 | MS.gene89706:CDS | 45.0% | |
| GAGTTGCCACGTTAGATAAG+TGG | - | chr4.4:5091479-5091498 | None:intergenic | 45.0% | |
| GGCAATAACTCATCAAGACC+TGG | + | chr4.4:5093172-5093191 | MS.gene89706:CDS | 45.0% | |
| GGCAGTATGTTCCTGACATA+AGG | - | chr4.4:5091359-5091378 | None:intergenic | 45.0% | |
| GGCCATATACCTGTTATTCC+AGG | + | chr4.4:5094236-5094255 | MS.gene89706:intron | 45.0% | |
| GTTTCTACGATGAGTGCAAG+AGG | + | chr4.4:5092115-5092134 | MS.gene89706:CDS | 45.0% | |
| GTTTGGAAAGTCCCAGATCA+TGG | + | chr4.4:5091551-5091570 | MS.gene89706:intron | 45.0% | |
| TACAGTCACCAGCTTACGTT+TGG | - | chr4.4:5093029-5093048 | None:intergenic | 45.0% | |
| TCCGATAAGAAGGGCAAAGT+TGG | + | chr4.4:5093145-5093164 | MS.gene89706:CDS | 45.0% | |
| TCTGATATGTAGAGCTCACC+AGG | + | chr4.4:5092437-5092456 | MS.gene89706:CDS | 45.0% | |
| TGATTGACCAATGCCATCCT+TGG | + | chr4.4:5092502-5092521 | MS.gene89706:intron | 45.0% | |
| TGTGTTTCCACATTGCGGAT+GGG | + | chr4.4:5091180-5091199 | MS.gene89706:intron | 45.0% | |
| TTAAGGCTGTTCGAATACGG+GGG | + | chr4.4:5091928-5091947 | MS.gene89706:CDS | 45.0% | |
| TTGGCCTGTTGACATTTGTG+CGG | + | chr4.4:5091411-5091430 | MS.gene89706:intron | 45.0% | |
| TTGTGTTTCCACATTGCGGA+TGG | + | chr4.4:5091179-5091198 | MS.gene89706:intron | 45.0% | |
| TTGTTTGCAGGAGATGTCCA+TGG | + | chr4.4:5091889-5091908 | MS.gene89706:intron | 45.0% | |
| ! | ACCAGATACTCAAGGTGTCA+AGG | - | chr4.4:5091737-5091756 | None:intergenic | 45.0% |
| ! | ACTGCCTTGTGGTGTGTTTT+TGG | + | chr4.4:5091373-5091392 | MS.gene89706:intron | 45.0% |
| ! | CCAGATACTCAAGGTGTCAA+GGG | - | chr4.4:5091736-5091755 | None:intergenic | 45.0% |
| ! | CTGCCTTGTGGTGTGTTTTT+GGG | + | chr4.4:5091374-5091393 | MS.gene89706:intron | 45.0% |
| ! | CTTTTGCCCAAACCATGATC+TGG | - | chr4.4:5091566-5091585 | None:intergenic | 45.0% |
| ! | GGAGGTATAATGTTCGTCTC+TGG | + | chr4.4:5092136-5092155 | MS.gene89706:CDS | 45.0% |
| ! | TAAGCACATGCTTTGAGCAG+AGG | + | chr4.4:5092605-5092624 | MS.gene89706:intron | 45.0% |
| ! | TGGGATTTTGCTTCGCTTAG+GGG | + | chr4.4:5092902-5092921 | MS.gene89706:intron | 45.0% |
| ! | TGTCTGTGTGCTGGTGTATT+GGG | + | chr4.4:5092883-5092902 | MS.gene89706:intron | 45.0% |
| ! | TTGTCTGTGTGCTGGTGTAT+TGG | + | chr4.4:5092882-5092901 | MS.gene89706:intron | 45.0% |
| !!! | TTTTTTTTTGGGTGGGGAGG+GGG | - | chr4.4:5094028-5094047 | None:intergenic | 45.0% |
| !! | ATTAAAAAAAAAAAAAAAAG+AGG | - | chr4.4:5092831-5092850 | None:intergenic | 5.0% |
| !!! | ATTTTTTTTTTTAATTAAAG+CGG | + | chr4.4:5090923-5090942 | MS.gene89706:intron | 5.0% |
| !!! | TTTTTTTTTTTTTTTAATTG+CGG | + | chr4.4:5092833-5092852 | MS.gene89706:intron | 5.0% |
| AAAGTCCCCCATGCATGCAA+AGG | - | chr4.4:5092221-5092240 | None:intergenic | 50.0% | |
| AAGGGGTTTCCCATCTCAAC+AGG | - | chr4.4:5091256-5091275 | None:intergenic | 50.0% | |
| ACCTGGAACTCCACCTCATA+AGG | + | chr4.4:5093189-5093208 | MS.gene89706:CDS | 50.0% | |
| ACCTTATGAGGTGGAGTTCC+AGG | - | chr4.4:5093193-5093212 | None:intergenic | 50.0% | |
| AGTGCCGCACAAATGTCAAC+AGG | - | chr4.4:5091418-5091437 | None:intergenic | 50.0% | |
| CAGAAGAAAGAAGCTCGACC+AGG | - | chr4.4:5091306-5091325 | None:intergenic | 50.0% | |
| CCCTTGACACCTTGAGTATC+TGG | + | chr4.4:5091733-5091752 | MS.gene89706:intron | 50.0% | |
| CTGTGAATTCCCGGTTTAGG+TGG | + | chr4.4:5091323-5091342 | MS.gene89706:intron | 50.0% | |
| GAAGAAAGAAGCTCGACCAG+GGG | - | chr4.4:5091304-5091323 | None:intergenic | 50.0% | |
| GCAATCAAACTAGGGGGGAA+GGG | - | chr4.4:5091777-5091796 | None:intergenic | 50.0% | |
| GGATGGGGAGAAAATGATCG+AGG | + | chr4.4:5092354-5092373 | MS.gene89706:CDS | 50.0% | |
| GTCAGGAACATACTGCCTTG+TGG | + | chr4.4:5091362-5091381 | MS.gene89706:intron | 50.0% | |
| GTGTTTCCACATTGCGGATG+GGG | + | chr4.4:5091181-5091200 | MS.gene89706:intron | 50.0% | |
| GTTGACATTTGTGCGGCACT+CGG | + | chr4.4:5091418-5091437 | MS.gene89706:intron | 50.0% | |
| TATCAGGATCAGCCCACAGA+AGG | - | chr4.4:5092323-5092342 | None:intergenic | 50.0% | |
| TCCCGGTTTAGGTGGTATCT+GGG | + | chr4.4:5091331-5091350 | MS.gene89706:intron | 50.0% | |
| TCGTCTACTAGAGCAGCAAC+CGG | - | chr4.4:5092192-5092211 | None:intergenic | 50.0% | |
| TCTACGATGAGTGCAAGAGG+AGG | + | chr4.4:5092118-5092137 | MS.gene89706:CDS | 50.0% | |
| TCTTCCCACCCTGGAATAAC+AGG | - | chr4.4:5094248-5094267 | None:intergenic | 50.0% | |
| TGGGGGGTTATAATGCACTG+AGG | + | chr4.4:5091199-5091218 | MS.gene89706:intron | 50.0% | |
| TGTGCGGCACTCGGTTTAAA+TGG | + | chr4.4:5091427-5091446 | MS.gene89706:intron | 50.0% | |
| TGTTGAGATGGGAAACCCCT+TGG | + | chr4.4:5091255-5091274 | MS.gene89706:intron | 50.0% | |
| TGTTTCCACATTGCGGATGG+GGG | + | chr4.4:5091182-5091201 | MS.gene89706:intron | 50.0% | |
| TTCCCGGTTTAGGTGGTATC+TGG | + | chr4.4:5091330-5091349 | MS.gene89706:intron | 50.0% | |
| ! | GATTGATGGAGGCGCATTCA+TGG | - | chr4.4:5092086-5092105 | None:intergenic | 50.0% |
| ! | GCGTCTCAGGTTGTAGAAGA+TGG | + | chr4.4:5092989-5093008 | MS.gene89706:intron | 50.0% |
| ACCCCGGCCCTTATGTATAC+GGG | + | chr4.4:5094069-5094088 | MS.gene89706:intron | 55.0% | |
| ACCCGTATACATAAGGGCCG+GGG | - | chr4.4:5094073-5094092 | None:intergenic | 55.0% | |
| ATAACCCCCCATCCGCAATG+TGG | - | chr4.4:5091190-5091209 | None:intergenic | 55.0% | |
| CCTTCTCTGCGACCTTCTGT+GGG | + | chr4.4:5092308-5092327 | MS.gene89706:CDS | 55.0% | |
| CGACCCGTATACATAAGGGC+CGG | - | chr4.4:5094075-5094094 | None:intergenic | 55.0% | |
| GACCCCGGCCCTTATGTATA+CGG | + | chr4.4:5094068-5094087 | MS.gene89706:intron | 55.0% | |
| GACCCGTATACATAAGGGCC+GGG | - | chr4.4:5094074-5094093 | None:intergenic | 55.0% | |
| GCCCAGATACCACCTAAACC+GGG | - | chr4.4:5091335-5091354 | None:intergenic | 55.0% | |
| GGCAATCAAACTAGGGGGGA+AGG | - | chr4.4:5091778-5091797 | None:intergenic | 55.0% | |
| GGCCCAGATACCACCTAAAC+CGG | - | chr4.4:5091336-5091355 | None:intergenic | 55.0% | |
| GTATCTGGGCCCCTTATGTC+AGG | + | chr4.4:5091345-5091364 | MS.gene89706:intron | 55.0% | |
| GTTTCCACATTGCGGATGGG+GGG | + | chr4.4:5091183-5091202 | MS.gene89706:intron | 55.0% | |
| TCGCAGAGAAGGCCATGATC+TGG | - | chr4.4:5092300-5092319 | None:intergenic | 55.0% | |
| !! | TATTTTGGGGGCTGCGTCTC+AGG | + | chr4.4:5092976-5092995 | MS.gene89706:intron | 55.0% |
| !! | TGCCGGTGCTATGATGAGTG+TGG | + | chr4.4:5093084-5093103 | MS.gene89706:CDS | 55.0% |
| CCCACAGAAGGTCGCAGAGA+AGG | - | chr4.4:5092311-5092330 | None:intergenic | 60.0% | |
| GCCTTCTCTGCGACCTTCTG+TGG | + | chr4.4:5092307-5092326 | MS.gene89706:CDS | 60.0% | |
| TCCTGTGGGAGAAGTGACCC+CGG | + | chr4.4:5094053-5094072 | MS.gene89706:intron | 60.0% | |
| GCCGGGGTCACTTCTCCCAC+AGG | - | chr4.4:5094057-5094076 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 5090585 | 5094272 | 5090585 | ID=MS.gene89706 |
| chr4.4 | mRNA | 5090585 | 5094272 | 5090585 | ID=MS.gene89706.t1;Parent=MS.gene89706 |
| chr4.4 | exon | 5090585 | 5090762 | 5090585 | ID=MS.gene89706.t1.exon1;Parent=MS.gene89706.t1 |
| chr4.4 | CDS | 5090585 | 5090762 | 5090585 | ID=cds.MS.gene89706.t1;Parent=MS.gene89706.t1 |
| chr4.4 | exon | 5091899 | 5092458 | 5091899 | ID=MS.gene89706.t1.exon2;Parent=MS.gene89706.t1 |
| chr4.4 | CDS | 5091899 | 5092458 | 5091899 | ID=cds.MS.gene89706.t1;Parent=MS.gene89706.t1 |
| chr4.4 | exon | 5092998 | 5093210 | 5092998 | ID=MS.gene89706.t1.exon3;Parent=MS.gene89706.t1 |
| chr4.4 | CDS | 5092998 | 5093210 | 5092998 | ID=cds.MS.gene89706.t1;Parent=MS.gene89706.t1 |
| chr4.4 | exon | 5094258 | 5094272 | 5094258 | ID=MS.gene89706.t1.exon4;Parent=MS.gene89706.t1 |
| chr4.4 | CDS | 5094258 | 5094272 | 5094258 | ID=cds.MS.gene89706.t1;Parent=MS.gene89706.t1 |
| Gene Sequence |
| Protein sequence |
