AlfalfaGEDB | MS.gene33496

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004553 GO:0005975 GO:0008150 GO:0008152 GO:0016787 GO:0016798 GO:0044238 GO:0071704
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33496.t1	XP_003604643.1	91.7	48	4	0	2	49	186	233	4.60E-19	102.8

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33496.t1	P26205	45.3	75	16	2	1	50	169	243	4.0e-11	67.8

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33496.t1	A8TVQ0	91.7	48	4	0	2	49	186	233	3.3e-19	102.8

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04932	MS.gene33496	0.822835	1.92E-53	-1.69E-46
MS.gene049549	MS.gene33496	0.819777	9.72E-53	-1.69E-46
MS.gene051131	MS.gene33496	0.805657	1.20E-49	-1.69E-46
MS.gene05240	MS.gene33496	0.8429	1.95E-58	-1.69E-46
MS.gene052606	MS.gene33496	0.805236	1.47E-49	-1.69E-46
MS.gene052702	MS.gene33496	0.820855	5.50E-53	-1.69E-46
MS.gene053420	MS.gene33496	0.806146	9.48E-50	-1.69E-46
MS.gene053887	MS.gene33496	0.813255	2.81E-51	-1.69E-46
MS.gene054146	MS.gene33496	0.803228	3.85E-49	-1.69E-46
MS.gene054181	MS.gene33496	0.817236	3.66E-52	-1.69E-46
MS.gene054742	MS.gene33496	0.808323	3.28E-50	-1.69E-46
MS.gene05483	MS.gene33496	0.80683	6.80E-50	-1.69E-46
MS.gene054884	MS.gene33496	0.813958	1.97E-51	-1.69E-46
MS.gene055158	MS.gene33496	0.800061	1.72E-48	-1.69E-46
MS.gene056218	MS.gene33496	0.814418	1.56E-51	-1.69E-46
MS.gene056590	MS.gene33496	0.837411	5.28E-57	-1.69E-46
MS.gene056591	MS.gene33496	0.835801	1.36E-56	-1.69E-46
MS.gene056688	MS.gene33496	0.804153	2.48E-49	-1.69E-46
MS.gene056697	MS.gene33496	0.814917	1.21E-51	-1.69E-46
MS.gene056748	MS.gene33496	0.805965	1.03E-49	-1.69E-46
MS.gene056856	MS.gene33496	0.817116	3.90E-52	-1.69E-46
MS.gene056920	MS.gene33496	0.808585	2.88E-50	-1.69E-46
MS.gene057261	MS.gene33496	0.852892	3.43E-61	-1.69E-46
MS.gene057544	MS.gene33496	0.835567	1.56E-56	-1.69E-46
MS.gene057768	MS.gene33496	0.802188	6.32E-49	-1.69E-46
MS.gene058099	MS.gene33496	0.808593	2.87E-50	-1.69E-46
MS.gene058603	MS.gene33496	0.826737	2.30E-54	-1.69E-46
MS.gene059315	MS.gene33496	0.807912	4.01E-50	-1.69E-46
MS.gene059402	MS.gene33496	0.814553	1.45E-51	-1.69E-46
MS.gene059953	MS.gene33496	0.813007	3.18E-51	-1.69E-46
MS.gene059955	MS.gene33496	0.827782	1.29E-54	-1.69E-46
MS.gene060087	MS.gene33496	0.806161	9.41E-50	-1.69E-46
MS.gene060593	MS.gene33496	0.82085	5.51E-53	-1.69E-46

PPI:

Gene1	Gene2	Type

Find 10 sgRNAs with CRISPR-Local

Find 10 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GATATATGCTTCAAGGAATT+TGG	0.182257	4.2:+85748726	MS.gene33496:CDS
ACACTTTGAATACATCAGAT+TGG	0.462336	4.2:+85748793	MS.gene33496:CDS
CTTCGTGGATATATGCTTCA+AGG	0.473903	4.2:+85748719	MS.gene33496:CDS
TTGGAGACAGAGTAAAGCAT+TGG	0.480355	4.2:+85748745	MS.gene33496:CDS
TGGAGACAGAGTAAAGCATT+GGG	0.508305	4.2:+85748746	MS.gene33496:CDS
CAGCTGCATGAGCAAGAAGT+TGG	0.509222	4.2:-85748833	None:intergenic
GAAGTTGGTTGTGTGTGGCC+TGG	0.537777	4.2:-85748818	None:intergenic
GTATTCAAAGTGTAAGAGAA+TGG	0.570526	4.2:-85748783	None:intergenic
GAATACATCAGATTGGTACC+AGG	0.597455	4.2:+85748800	MS.gene33496:CDS
AGCAAGAAGTTGGTTGTGTG+TGG	0.636210	4.2:-85748823	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	ACACTTTGAATACATCAGAT+TGG	+	chr4.2:85748793-85748812	MS.gene33496:CDS	30.0%
	GATATATGCTTCAAGGAATT+TGG	+	chr4.2:85748726-85748745	MS.gene33496:CDS	30.0%
	GTATTCAAAGTGTAAGAGAA+TGG	-	chr4.2:85748786-85748805	None:intergenic	30.0%
!!	AGATGATTTTAAGGACTTCG+TGG	+	chr4.2:85748704-85748723	MS.gene33496:CDS	35.0%
	CTTCGTGGATATATGCTTCA+AGG	+	chr4.2:85748719-85748738	MS.gene33496:CDS	40.0%
	GAATACATCAGATTGGTACC+AGG	+	chr4.2:85748800-85748819	MS.gene33496:CDS	40.0%
	TTGGAGACAGAGTAAAGCAT+TGG	+	chr4.2:85748745-85748764	MS.gene33496:CDS	40.0%
!	TGGAGACAGAGTAAAGCATT+GGG	+	chr4.2:85748746-85748765	MS.gene33496:CDS	40.0%
!	AGCAAGAAGTTGGTTGTGTG+TGG	-	chr4.2:85748826-85748845	None:intergenic	45.0%
!	GAAGTTGGTTGTGTGTGGCC+TGG	-	chr4.2:85748821-85748840	None:intergenic	55.0%

Gene Sequence	>MS.gene33496 AGATGATTTTAAGGACTTCGTGGATATATGCTTCAAGGAATTTGGAGACAGAGTAAAGCATTGGGTTACTTTTAATGAGCCATTCTCTTACACTTTGAATACATCAGATTGGTACCAGGCCACACACAACCAACTTCTTGCTCATGCAGCT
Protein sequence	>MS.gene33496.t1 RUFUGLRGYMLQGIWRQSKALGYFUUAILLHFEYIRLVPGHTQPTSCSCS

Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	85748704	85748854	85748704	ID=MS.gene33496
chr4.2	mRNA	85748704	85748854	85748704	ID=MS.gene33496.t1;Parent=MS.gene33496
chr4.2	exon	85748704	85748854	85748704	ID=MS.gene33496.t1.exon1;Parent=MS.gene33496.t1
chr4.2	CDS	85748704	85748854	85748704	ID=cds.MS.gene33496.t1;Parent=MS.gene33496.t1

M. sativa cultivar XinJiangDaYe / MS.gene33496