Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34615.t1 | RHN72570.1 | 80.6 | 273 | 40 | 1 | 1 | 260 | 522 | 794 | 5.00E-125 | 457.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34615.t1 | Q9SSE9 | 51.9 | 270 | 117 | 3 | 1 | 260 | 600 | 866 | 3.5e-74 | 279.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34615.t1 | A0A072V4L2 | 80.6 | 273 | 40 | 1 | 1 | 260 | 520 | 792 | 3.6e-125 | 457.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene34615.t1 | TR | Jumonji |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049262 | MS.gene34615 | 0.82949 | 5.00E-55 | -1.69E-46 |
| MS.gene049541 | MS.gene34615 | 0.806819 | 6.83E-50 | -1.69E-46 |
| MS.gene049853 | MS.gene34615 | 0.873012 | 2.04E-67 | -1.69E-46 |
| MS.gene051575 | MS.gene34615 | 0.801138 | 1.04E-48 | -1.69E-46 |
| MS.gene052447 | MS.gene34615 | 0.802226 | 6.20E-49 | -1.69E-46 |
| MS.gene054174 | MS.gene34615 | 0.832516 | 9.04E-56 | -1.69E-46 |
| MS.gene054175 | MS.gene34615 | 0.83743 | 5.22E-57 | -1.69E-46 |
| MS.gene054484 | MS.gene34615 | 0.832072 | 1.16E-55 | -1.69E-46 |
| MS.gene055017 | MS.gene34615 | 0.81404 | 1.89E-51 | -1.69E-46 |
| MS.gene055056 | MS.gene34615 | 0.829066 | 6.34E-55 | -1.69E-46 |
| MS.gene055058 | MS.gene34615 | 0.837423 | 5.25E-57 | -1.69E-46 |
| MS.gene05531 | MS.gene34615 | 0.823226 | 1.55E-53 | -1.69E-46 |
| MS.gene055952 | MS.gene34615 | 0.813029 | 3.15E-51 | -1.69E-46 |
| MS.gene05762 | MS.gene34615 | 0.802101 | 6.58E-49 | -1.69E-46 |
| MS.gene058515 | MS.gene34615 | 0.81831 | 2.10E-52 | -1.69E-46 |
| MS.gene058580 | MS.gene34615 | 0.812581 | 3.95E-51 | -1.69E-46 |
| MS.gene059276 | MS.gene34615 | 0.855903 | 4.62E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34615.t1 | MTR_2g024270 | 80.586 | 273 | 40 | 1 | 1 | 260 | 520 | 792 | 1.21e-155 | 453 |
| MS.gene34615.t1 | MTR_2g024140 | 74.725 | 273 | 46 | 2 | 1 | 260 | 398 | 660 | 2.24e-140 | 410 |
| MS.gene34615.t1 | MTR_2g024240 | 72.908 | 251 | 65 | 3 | 1 | 250 | 140 | 388 | 4.58e-124 | 358 |
| MS.gene34615.t1 | MTR_4g132540 | 57.143 | 308 | 84 | 4 | 1 | 260 | 532 | 839 | 1.60e-112 | 343 |
| MS.gene34615.t1 | MTR_5g065200 | 56.364 | 275 | 95 | 4 | 1 | 260 | 543 | 807 | 8.58e-97 | 301 |
| MS.gene34615.t1 | MTR_1g069565 | 50.809 | 309 | 102 | 4 | 1 | 260 | 547 | 854 | 3.22e-96 | 301 |
| MS.gene34615.t1 | MTR_1g114150 | 55.124 | 283 | 103 | 3 | 1 | 260 | 742 | 1023 | 6.33e-96 | 303 |
| MS.gene34615.t1 | MTR_1g114130 | 53.333 | 285 | 106 | 3 | 1 | 260 | 729 | 1011 | 3.98e-94 | 299 |
| MS.gene34615.t1 | MTR_1g114070 | 50.916 | 273 | 119 | 2 | 1 | 260 | 627 | 897 | 1.72e-86 | 277 |
| MS.gene34615.t1 | MTR_5g047620 | 49.498 | 299 | 106 | 6 | 1 | 260 | 478 | 770 | 4.32e-84 | 268 |
| MS.gene34615.t1 | MTR_0020s0100 | 50.549 | 273 | 117 | 5 | 1 | 260 | 414 | 681 | 6.31e-81 | 257 |
| MS.gene34615.t1 | MTR_1g069565 | 40.437 | 366 | 111 | 6 | 1 | 260 | 547 | 911 | 1.48e-76 | 249 |
| MS.gene34615.t1 | MTR_8g465720 | 85.366 | 123 | 17 | 1 | 106 | 228 | 18 | 139 | 5.02e-73 | 221 |
| MS.gene34615.t1 | MTR_1g083120 | 35.484 | 310 | 146 | 7 | 1 | 260 | 561 | 866 | 1.65e-47 | 169 |
| MS.gene34615.t1 | MTR_1g083120 | 35.484 | 310 | 146 | 7 | 1 | 260 | 578 | 883 | 1.67e-47 | 169 |
| MS.gene34615.t1 | MTR_1g114150 | 46.734 | 199 | 82 | 3 | 1 | 176 | 742 | 939 | 1.92e-47 | 169 |
| MS.gene34615.t1 | MTR_7g117445 | 63.934 | 122 | 44 | 0 | 139 | 260 | 778 | 899 | 8.49e-47 | 167 |
| MS.gene34615.t1 | MTR_7g117445 | 56.566 | 99 | 43 | 0 | 1 | 99 | 550 | 648 | 7.60e-30 | 118 |
| MS.gene34615.t1 | MTR_7g117445 | 63.934 | 122 | 44 | 0 | 139 | 260 | 778 | 899 | 8.55e-47 | 167 |
| MS.gene34615.t1 | MTR_7g117445 | 56.566 | 99 | 43 | 0 | 1 | 99 | 550 | 648 | 6.70e-30 | 118 |
| MS.gene34615.t1 | MTR_7g117445 | 63.934 | 122 | 44 | 0 | 139 | 260 | 778 | 899 | 8.68e-47 | 167 |
| MS.gene34615.t1 | MTR_7g117445 | 56.566 | 99 | 43 | 0 | 1 | 99 | 550 | 648 | 7.73e-30 | 118 |
| MS.gene34615.t1 | MTR_8g465700 | 82.759 | 87 | 15 | 0 | 1 | 87 | 91 | 177 | 1.80e-46 | 156 |
| MS.gene34615.t1 | MTR_1g008060 | 61.600 | 125 | 48 | 0 | 136 | 260 | 1537 | 1661 | 1.89e-45 | 163 |
| MS.gene34615.t1 | MTR_1g008060 | 65.909 | 88 | 29 | 1 | 1 | 88 | 1236 | 1322 | 3.61e-30 | 119 |
| MS.gene34615.t1 | MTR_1g008060 | 61.600 | 125 | 48 | 0 | 136 | 260 | 1546 | 1670 | 2.18e-45 | 163 |
| MS.gene34615.t1 | MTR_1g008060 | 65.909 | 88 | 29 | 1 | 1 | 88 | 1245 | 1331 | 3.94e-30 | 119 |
| MS.gene34615.t1 | MTR_1g083120 | 35.252 | 278 | 126 | 7 | 1 | 228 | 561 | 834 | 1.23e-39 | 146 |
| MS.gene34615.t1 | MTR_1g083120 | 35.252 | 278 | 126 | 7 | 1 | 228 | 561 | 834 | 1.64e-39 | 145 |
| MS.gene34615.t1 | MTR_2g011630 | 30.769 | 325 | 157 | 6 | 2 | 260 | 363 | 685 | 9.34e-37 | 137 |
| MS.gene34615.t1 | MTR_2g011630 | 30.462 | 325 | 158 | 5 | 2 | 260 | 395 | 717 | 1.13e-36 | 137 |
| MS.gene34615.t1 | MTR_2g011630 | 30.769 | 325 | 157 | 6 | 2 | 260 | 607 | 929 | 2.86e-36 | 136 |
| MS.gene34615.t1 | MTR_7g117445 | 64.773 | 88 | 31 | 0 | 139 | 226 | 778 | 865 | 2.10e-32 | 125 |
| MS.gene34615.t1 | MTR_7g117445 | 56.566 | 99 | 43 | 0 | 1 | 99 | 550 | 648 | 9.29e-30 | 117 |
| MS.gene34615.t1 | MTR_4g091520 | 46.400 | 125 | 66 | 1 | 136 | 260 | 1128 | 1251 | 4.52e-31 | 122 |
| MS.gene34615.t1 | MTR_4g091520 | 33.129 | 163 | 92 | 3 | 1 | 150 | 906 | 1064 | 1.02e-13 | 71.2 |
| MS.gene34615.t1 | MTR_0295s0020 | 48.673 | 113 | 58 | 0 | 1 | 113 | 47 | 159 | 8.32e-31 | 113 |
| MS.gene34615.t1 | MTR_8g013920 | 60.465 | 86 | 30 | 2 | 1 | 86 | 41 | 122 | 1.62e-27 | 105 |
| MS.gene34615.t1 | MTR_4g091520 | 33.129 | 163 | 92 | 3 | 1 | 150 | 836 | 994 | 7.05e-14 | 71.6 |
| MS.gene34615.t1 | MTR_4g091520 | 33.129 | 163 | 92 | 3 | 1 | 150 | 871 | 1029 | 9.20e-14 | 71.2 |
| MS.gene34615.t1 | MTR_4g091520 | 33.129 | 163 | 92 | 3 | 1 | 150 | 906 | 1064 | 9.69e-14 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34615.t1 | AT1G11950 | 63.004 | 273 | 80 | 5 | 1 | 260 | 579 | 843 | 5.08e-111 | 340 |
| MS.gene34615.t1 | AT1G11950 | 63.004 | 273 | 80 | 5 | 1 | 260 | 579 | 843 | 5.08e-111 | 340 |
| MS.gene34615.t1 | AT1G62310 | 59.707 | 273 | 97 | 1 | 1 | 260 | 597 | 869 | 3.92e-107 | 330 |
| MS.gene34615.t1 | AT3G07610 | 52.222 | 270 | 116 | 4 | 1 | 260 | 600 | 866 | 7.23e-85 | 273 |
| MS.gene34615.t1 | AT1G11950 | 60.173 | 231 | 71 | 5 | 1 | 218 | 579 | 801 | 1.95e-84 | 268 |
| MS.gene34615.t1 | AT3G07610 | 48.630 | 292 | 115 | 5 | 1 | 260 | 600 | 888 | 1.53e-80 | 261 |
| MS.gene34615.t1 | AT4G00990 | 59.016 | 122 | 50 | 0 | 139 | 260 | 683 | 804 | 4.45e-44 | 159 |
| MS.gene34615.t1 | AT4G00990 | 60.825 | 97 | 38 | 0 | 1 | 97 | 467 | 563 | 5.33e-32 | 124 |
| MS.gene34615.t1 | AT1G09060 | 34.884 | 301 | 148 | 6 | 1 | 260 | 572 | 865 | 1.00e-40 | 149 |
| MS.gene34615.t1 | AT1G09060 | 34.884 | 301 | 148 | 6 | 1 | 260 | 572 | 865 | 1.00e-40 | 149 |
| MS.gene34615.t1 | AT1G09060 | 34.884 | 301 | 148 | 6 | 1 | 260 | 586 | 879 | 1.03e-40 | 149 |
| MS.gene34615.t1 | AT1G09060 | 34.884 | 301 | 148 | 6 | 1 | 260 | 586 | 879 | 1.03e-40 | 149 |
| MS.gene34615.t1 | AT4G21430 | 32.013 | 303 | 159 | 7 | 2 | 259 | 586 | 886 | 3.48e-36 | 136 |
| MS.gene34615.t1 | AT4G00990 | 60.825 | 97 | 38 | 0 | 1 | 97 | 467 | 563 | 5.40e-32 | 124 |
| MS.gene34615.t1 | AT4G00990 | 54.167 | 96 | 44 | 0 | 139 | 234 | 683 | 778 | 6.89e-30 | 118 |
| MS.gene34615.t1 | AT4G00990 | 60.825 | 97 | 38 | 0 | 1 | 97 | 467 | 563 | 6.16e-32 | 124 |
| MS.gene34615.t1 | AT4G00990 | 59.091 | 88 | 36 | 0 | 139 | 226 | 683 | 770 | 1.40e-29 | 117 |
| MS.gene34615.t1 | AT3G07610 | 56.522 | 92 | 40 | 0 | 1 | 92 | 600 | 691 | 1.81e-26 | 108 |
Find 42 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAACATTCCAAAGAATTT+AGG | 0.229200 | 8.1:+47647053 | MS.gene34615:CDS |
| ATAAGTATGCCTAAATTCTT+TGG | 0.239219 | 8.1:-47647062 | None:intergenic |
| AAGAAGCTGGAGGCAGAATT+TGG | 0.254763 | 8.1:+47647238 | MS.gene34615:CDS |
| TCCTCCGCCAAGCTCTTCTT+TGG | 0.300657 | 8.1:-47646636 | None:intergenic |
| GAGCTTGGCGGAGGAGATTC+TGG | 0.313047 | 8.1:+47646644 | MS.gene34615:CDS |
| GAGGGTCTTGTTAAAGATAA+TGG | 0.314479 | 8.1:+47646896 | MS.gene34615:CDS |
| TCCCTTGCTCAGTGATTCTT+AGG | 0.341410 | 8.1:-47648894 | None:intergenic |
| TACAAAACTCCATTGTGATA+TGG | 0.386545 | 8.1:+47646667 | MS.gene34615:CDS |
| TCACCTTCAGATTTCTAACT+TGG | 0.413712 | 8.1:-47647398 | None:intergenic |
| TAATATAATACCTCATATAC+TGG | 0.425727 | 8.1:-47647091 | None:intergenic |
| AGCTTTCCTTTGATCTCAAA+AGG | 0.436249 | 8.1:-47646923 | None:intergenic |
| GAGTATAGCGATCCTCGATC+TGG | 0.445453 | 8.1:+47646533 | MS.gene34615:CDS |
| TTATTGTTCTCCAGTATATG+AGG | 0.473893 | 8.1:+47647081 | MS.gene34615:CDS |
| AATGTCTTGCCGCGCCTTTG+TGG | 0.481907 | 8.1:+47646482 | MS.gene34615:CDS |
| GGATCGCTATACTCTTGAAA+TGG | 0.490375 | 8.1:-47646524 | None:intergenic |
| ACCAAAGAAGAGCTTGGCGG+AGG | 0.542386 | 8.1:+47646635 | MS.gene34615:CDS |
| CAATTACAGGTGTAGTACCT+TGG | 0.542531 | 8.1:+47647322 | MS.gene34615:intron |
| TTGCTCAGTGATTCTTAGGA+AGG | 0.546083 | 8.1:-47648890 | None:intergenic |
| TTCAGATTTCTAACTTGGTG+AGG | 0.548770 | 8.1:-47647393 | None:intergenic |
| CATGTCATAAAGCCTGACTT+AGG | 0.552096 | 8.1:+47646587 | MS.gene34615:CDS |
| TCAGATTTCTAACTTGGTGA+GGG | 0.555680 | 8.1:-47647392 | None:intergenic |
| ACTTGGTGAGGGCATCCAGC+AGG | 0.556782 | 8.1:-47647381 | None:intergenic |
| CTTCGTGTCACCAGAAAATG+TGG | 0.557709 | 8.1:+47648833 | MS.gene34615:CDS |
| AGATGCTCAAGCTAAAAGAC+TGG | 0.578780 | 8.1:+47646438 | None:intergenic |
| TATGGAACCAAAGAAGAGCT+TGG | 0.585851 | 8.1:+47646629 | MS.gene34615:CDS |
| TAAGGCTCAAGATATGAAAG+AGG | 0.587656 | 8.1:+47646877 | MS.gene34615:CDS |
| GTGGTGGCAACTTTGCAGCA+AGG | 0.598809 | 8.1:-47646565 | None:intergenic |
| AACGGATAAACTCGCCACAA+AGG | 0.600066 | 8.1:-47646496 | None:intergenic |
| AAAGATACATCAGAAACAGC+TGG | 0.604136 | 8.1:+47646974 | MS.gene34615:CDS |
| GAAGCAGTATTTATACCTGC+TGG | 0.606997 | 8.1:+47647366 | MS.gene34615:CDS |
| GGAACCAAAGAAGAGCTTGG+CGG | 0.614905 | 8.1:+47646632 | MS.gene34615:CDS |
| TCACCAAGTTAGAAATCTGA+AGG | 0.615043 | 8.1:+47647395 | MS.gene34615:CDS |
| TCAGGCTTTATGACATGTGG+TGG | 0.618540 | 8.1:-47646581 | None:intergenic |
| AGTTTCTGCTCAAAAGTCCA+AGG | 0.636979 | 8.1:-47647339 | None:intergenic |
| AAGGCTCAAGATATGAAAGA+GGG | 0.638799 | 8.1:+47646878 | MS.gene34615:CDS |
| AGGTTTAGAATTCCAGATCG+AGG | 0.639738 | 8.1:-47646545 | None:intergenic |
| AAGTCAGGCTTTATGACATG+TGG | 0.640339 | 8.1:-47646584 | None:intergenic |
| TGAGTATAAGAAGAAGCTGG+AGG | 0.641321 | 8.1:+47647228 | MS.gene34615:CDS |
| ACTCTTGAAATGGCAAACAA+CGG | 0.651117 | 8.1:-47646514 | None:intergenic |
| ATAAACTCGCCACAAAGGCG+CGG | 0.652008 | 8.1:-47646491 | None:intergenic |
| GGTCTTGTTAAAGATAATGG+AGG | 0.669806 | 8.1:+47646899 | MS.gene34615:CDS |
| CTGCGTCTGCCATATCACAA+TGG | 0.683115 | 8.1:-47646676 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATATTAGATTTGAAA+AGG | + | chr8.1:47648140-47648159 | MS.gene34615:intron | 10.0% |
| !! | AATTAATAATTGTAACTCTA+TGG | - | chr8.1:47648429-47648448 | None:intergenic | 15.0% |
| !!! | ATCTTACTCTAAAAAAAATT+AGG | + | chr8.1:47647604-47647623 | MS.gene34615:intron | 15.0% |
| !! | AAACTTAAATTTAAGTCAAG+AGG | - | chr8.1:47648711-47648730 | None:intergenic | 20.0% |
| !! | ACATATCATAAGTATTACAT+AGG | - | chr8.1:47648322-47648341 | None:intergenic | 20.0% |
| !! | AGAGAGTAATAAATAGATAA+GGG | - | chr8.1:47648504-47648523 | None:intergenic | 20.0% |
| !! | CAAAAGTCAAATAAAAACAT+TGG | - | chr8.1:47647210-47647229 | None:intergenic | 20.0% |
| !! | CAAGAATATTAATCAATTAC+AGG | + | chr8.1:47647309-47647328 | MS.gene34615:intron | 20.0% |
| !! | TAATATAATACCTCATATAC+TGG | - | chr8.1:47647094-47647113 | None:intergenic | 20.0% |
| !! | TATCCTTATTAATATAGTGT+GGG | - | chr8.1:47648554-47648573 | None:intergenic | 20.0% |
| !! | TGTATTTATATCATTAACCT+GGG | + | chr8.1:47648033-47648052 | MS.gene34615:intron | 20.0% |
| !! | TTATCCTTATTAATATAGTG+TGG | - | chr8.1:47648555-47648574 | None:intergenic | 20.0% |
| !! | TTGTATTTATATCATTAACC+TGG | + | chr8.1:47648032-47648051 | MS.gene34615:intron | 20.0% |
| !!! | AAAAATAAAAAGAGCACATA+AGG | + | chr8.1:47646859-47646878 | MS.gene34615:CDS | 20.0% |
| !!! | TATTGTTCAATAATTTTGAC+AGG | + | chr8.1:47646774-47646793 | MS.gene34615:intron | 20.0% |
| ! | AATCGATTGATGAATATATG+AGG | - | chr8.1:47647642-47647661 | None:intergenic | 25.0% |
| ! | AATGTAATTCTCTGTTGATA+CGG | - | chr8.1:47648192-47648211 | None:intergenic | 25.0% |
| ! | ATAAGTATGCCTAAATTCTT+TGG | - | chr8.1:47647065-47647084 | None:intergenic | 25.0% |
| ! | GAAAACATTCCAAAGAATTT+AGG | + | chr8.1:47647053-47647072 | MS.gene34615:CDS | 25.0% |
| ! | GACCAAAATGACTTATAATT+TGG | + | chr8.1:47648644-47648663 | MS.gene34615:intron | 25.0% |
| ! | GAGAGAGTAATAAATAGATA+AGG | - | chr8.1:47648505-47648524 | None:intergenic | 25.0% |
| ! | GTGATAATAAATACACTCTT+TGG | + | chr8.1:47647878-47647897 | MS.gene34615:intron | 25.0% |
| ! | TAAAAACATTGGTCATGAAT+AGG | - | chr8.1:47647199-47647218 | None:intergenic | 25.0% |
| ! | TAAATAGTACATGTTTCTTG+TGG | + | chr8.1:47648730-47648749 | MS.gene34615:intron | 25.0% |
| ! | TATGTTAAGTTTATGTGTCT+AGG | + | chr8.1:47648268-47648287 | MS.gene34615:intron | 25.0% |
| ! | TCATCAATCAATCAAAATGT+AGG | + | chr8.1:47647856-47647875 | MS.gene34615:intron | 25.0% |
| ! | TTACTAGTGAATTTATTTGC+TGG | + | chr8.1:47648080-47648099 | MS.gene34615:intron | 25.0% |
| ! | TTTCCCACACTATATTAATA+AGG | + | chr8.1:47648548-47648567 | MS.gene34615:intron | 25.0% |
| !! | ACATTTTCAAACTCATCATA+AGG | - | chr8.1:47646467-47646486 | None:intergenic | 25.0% |
| !! | CACCAAATTATAAGTCATTT+TGG | - | chr8.1:47648649-47648668 | None:intergenic | 25.0% |
| !! | TGTAGTATTGAAGAAACTAA+TGG | + | chr8.1:47648354-47648373 | MS.gene34615:intron | 25.0% |
| !!! | AGCAATGTCTTATTTTTTTG+TGG | + | chr8.1:47648378-47648397 | MS.gene34615:intron | 25.0% |
| !!! | TATTTTGACTCATATAACTG+AGG | + | chr8.1:47646801-47646820 | MS.gene34615:intron | 25.0% |
| !!! | TTTTTTTGTGGTTACATCAA+TGG | + | chr8.1:47648390-47648409 | MS.gene34615:intron | 25.0% |
| AAAGAACAAAAAGGGTAAAG+AGG | - | chr8.1:47647444-47647463 | None:intergenic | 30.0% | |
| ACACAACTTCACAAGTAATA+TGG | - | chr8.1:47647561-47647580 | None:intergenic | 30.0% | |
| ACATACTAGTACGTTACAAT+GGG | - | chr8.1:47647834-47647853 | None:intergenic | 30.0% | |
| ATGTACTTTCAACGCTATAT+TGG | + | chr8.1:47646718-47646737 | MS.gene34615:intron | 30.0% | |
| GAGGATTACATTACATATAG+AGG | - | chr8.1:47648692-47648711 | None:intergenic | 30.0% | |
| GATTAAAATGCATGTGATCA+TGG | + | chr8.1:47647658-47647677 | MS.gene34615:intron | 30.0% | |
| GCGTGAAAATGAAAGAAAAA+GGG | - | chr8.1:47647470-47647489 | None:intergenic | 30.0% | |
| TACAAAACTCCATTGTGATA+TGG | + | chr8.1:47646667-47646686 | MS.gene34615:CDS | 30.0% | |
| TACATACTAGTACGTTACAA+TGG | - | chr8.1:47647835-47647854 | None:intergenic | 30.0% | |
| TTATTGTTCTCCAGTATATG+AGG | + | chr8.1:47647081-47647100 | MS.gene34615:CDS | 30.0% | |
| ! | GATGTATCTTTTGTGATTGA+TGG | - | chr8.1:47646965-47646984 | None:intergenic | 30.0% |
| ! | TTTTCAAACTCATCATAAGG+TGG | - | chr8.1:47646464-47646483 | None:intergenic | 30.0% |
| !! | TGAAAAGGAGCATCATATTA+TGG | + | chr8.1:47648155-47648174 | MS.gene34615:intron | 30.0% |
| !! | TTTTGAGTATAAGAAGAAGC+TGG | + | chr8.1:47647225-47647244 | MS.gene34615:CDS | 30.0% |
| !!! | CACTAACTTTTTTGTTGCTT+AGG | + | chr8.1:47647165-47647184 | MS.gene34615:intron | 30.0% |
| !!! | TGGCTGTAGTTGTTTTTTTT+AGG | + | chr8.1:47647710-47647729 | MS.gene34615:intron | 30.0% |
| AAAGATACATCAGAAACAGC+TGG | + | chr8.1:47646974-47646993 | MS.gene34615:CDS | 35.0% | |
| AAAGGGCAGAAAGAACAAAA+AGG | - | chr8.1:47647453-47647472 | None:intergenic | 35.0% | |
| AAGGCTCAAGATATGAAAGA+GGG | + | chr8.1:47646878-47646897 | MS.gene34615:CDS | 35.0% | |
| AAGGGCAGAAAGAACAAAAA+GGG | - | chr8.1:47647452-47647471 | None:intergenic | 35.0% | |
| ACAAACCAGAAGAAATTGTG+AGG | - | chr8.1:47647739-47647758 | None:intergenic | 35.0% | |
| ACTCTTGAAATGGCAAACAA+CGG | - | chr8.1:47646517-47646536 | None:intergenic | 35.0% | |
| AGCTTTCCTTTGATCTCAAA+AGG | - | chr8.1:47646926-47646945 | None:intergenic | 35.0% | |
| CGCGTGAAAATGAAAGAAAA+AGG | - | chr8.1:47647471-47647490 | None:intergenic | 35.0% | |
| GCAAAAACTTACGTTGCTTA+TGG | + | chr8.1:47646611-47646630 | MS.gene34615:CDS | 35.0% | |
| TAAGGCTCAAGATATGAAAG+AGG | + | chr8.1:47646877-47646896 | MS.gene34615:CDS | 35.0% | |
| TCACCAAGTTAGAAATCTGA+AGG | + | chr8.1:47647395-47647414 | MS.gene34615:CDS | 35.0% | |
| TCACCTTCAGATTTCTAACT+TGG | - | chr8.1:47647401-47647420 | None:intergenic | 35.0% | |
| TCACTCACAATACAAGTACA+GGG | - | chr8.1:47647966-47647985 | None:intergenic | 35.0% | |
| TGTAAACACATCATCACGAA+TGG | - | chr8.1:47647779-47647798 | None:intergenic | 35.0% | |
| TGTATTGTGAGTGAGTTCAT+GGG | + | chr8.1:47647972-47647991 | MS.gene34615:intron | 35.0% | |
| TTGTATTGTGAGTGAGTTCA+TGG | + | chr8.1:47647971-47647990 | MS.gene34615:intron | 35.0% | |
| ! | ATGCAGATATCCACATTTTC+TGG | - | chr8.1:47648846-47648865 | None:intergenic | 35.0% |
| ! | TAAGTTTTTGCACCTAAGTC+AGG | - | chr8.1:47646602-47646621 | None:intergenic | 35.0% |
| ! | TCAGATTTCTAACTTGGTGA+GGG | - | chr8.1:47647395-47647414 | None:intergenic | 35.0% |
| ! | TTCAGATTTCTAACTTGGTG+AGG | - | chr8.1:47647396-47647415 | None:intergenic | 35.0% |
| !! | GAGGGTCTTGTTAAAGATAA+TGG | + | chr8.1:47646896-47646915 | MS.gene34615:CDS | 35.0% |
| !! | GGTCTTGTTAAAGATAATGG+AGG | + | chr8.1:47646899-47646918 | MS.gene34615:CDS | 35.0% |
| AGTTTCTGCTCAAAAGTCCA+AGG | - | chr8.1:47647342-47647361 | None:intergenic | 40.0% | |
| ATTCAAGCGACCAAGAAACA+TGG | - | chr8.1:47647999-47648018 | None:intergenic | 40.0% | |
| CAATTACAGGTGTAGTACCT+TGG | + | chr8.1:47647322-47647341 | MS.gene34615:intron | 40.0% | |
| CATCACGAATGGTAGCTTAA+GGG | - | chr8.1:47647768-47647787 | None:intergenic | 40.0% | |
| CATGTCATAAAGCCTGACTT+AGG | + | chr8.1:47646587-47646606 | MS.gene34615:CDS | 40.0% | |
| CTCACTCACAATACAAGTAC+AGG | - | chr8.1:47647967-47647986 | None:intergenic | 40.0% | |
| GAAGCAGTATTTATACCTGC+TGG | + | chr8.1:47647366-47647385 | MS.gene34615:CDS | 40.0% | |
| GGATCGCTATACTCTTGAAA+TGG | - | chr8.1:47646527-47646546 | None:intergenic | 40.0% | |
| GGTTACCTCACAATTTCTTC+TGG | + | chr8.1:47647731-47647750 | MS.gene34615:intron | 40.0% | |
| GTATTGTGAGTGAGTTCATG+GGG | + | chr8.1:47647973-47647992 | MS.gene34615:intron | 40.0% | |
| TATGGAACCAAAGAAGAGCT+TGG | + | chr8.1:47646629-47646648 | MS.gene34615:CDS | 40.0% | |
| TCATCACGAATGGTAGCTTA+AGG | - | chr8.1:47647769-47647788 | None:intergenic | 40.0% | |
| TGAGTATAAGAAGAAGCTGG+AGG | + | chr8.1:47647228-47647247 | MS.gene34615:CDS | 40.0% | |
| TTGGTGCGACAAGTATAAGA+TGG | + | chr8.1:47646737-47646756 | MS.gene34615:intron | 40.0% | |
| TTTGACTCCTAGTTGAGAGT+CGG | + | chr8.1:47647684-47647703 | MS.gene34615:intron | 40.0% | |
| ! | AAGTCAGGCTTTATGACATG+TGG | - | chr8.1:47646587-47646606 | None:intergenic | 40.0% |
| ! | AGGTTTAGAATTCCAGATCG+AGG | - | chr8.1:47646548-47646567 | None:intergenic | 40.0% |
| ! | TGGACTTTTGAGCAGAAACT+TGG | + | chr8.1:47647342-47647361 | MS.gene34615:CDS | 40.0% |
| !! | ACACTCTTTGGTTTGTTGCT+AGG | + | chr8.1:47647890-47647909 | MS.gene34615:intron | 40.0% |
| !! | CACTCTTTGGTTTGTTGCTA+GGG | + | chr8.1:47647891-47647910 | MS.gene34615:intron | 40.0% |
| AACGGATAAACTCGCCACAA+AGG | - | chr8.1:47646499-47646518 | None:intergenic | 45.0% | |
| AAGAAGCTGGAGGCAGAATT+TGG | + | chr8.1:47647238-47647257 | MS.gene34615:CDS | 45.0% | |
| CTTCGTGTCACCAGAAAATG+TGG | + | chr8.1:47648833-47648852 | MS.gene34615:CDS | 45.0% | |
| TGTTGCCATGTCTCATGTGA+GGG | + | chr8.1:47647533-47647552 | MS.gene34615:intron | 45.0% | |
| TTGTTGCCATGTCTCATGTG+AGG | + | chr8.1:47647532-47647551 | MS.gene34615:intron | 45.0% | |
| ! | TCAGGCTTTATGACATGTGG+TGG | - | chr8.1:47646584-47646603 | None:intergenic | 45.0% |
| !! | TCCTAGTTGAGAGTCGGTTT+TGG | + | chr8.1:47647690-47647709 | MS.gene34615:intron | 45.0% |
| !!! | GGAGGTCCTTTTGAGATCAA+AGG | + | chr8.1:47646917-47646936 | MS.gene34615:CDS | 45.0% |
| ATAAACTCGCCACAAAGGCG+CGG | - | chr8.1:47646494-47646513 | None:intergenic | 50.0% | |
| CTGCGTCTGCCATATCACAA+TGG | - | chr8.1:47646679-47646698 | None:intergenic | 50.0% | |
| GAGTATAGCGATCCTCGATC+TGG | + | chr8.1:47646533-47646552 | MS.gene34615:CDS | 50.0% | |
| GGAACCAAAGAAGAGCTTGG+CGG | + | chr8.1:47646632-47646651 | MS.gene34615:CDS | 50.0% | |
| GTTCATGGGGCCATGTTTCT+TGG | + | chr8.1:47647986-47648005 | MS.gene34615:intron | 50.0% | |
| TGGTTCCCTCACATGAGACA+TGG | - | chr8.1:47647541-47647560 | None:intergenic | 50.0% | |
| TTGCTAGGGACGTCTTGTGT+GGG | + | chr8.1:47647905-47647924 | MS.gene34615:intron | 50.0% | |
| ! | CAAGAGCACAAGAAATGCCC+AGG | - | chr8.1:47648053-47648072 | None:intergenic | 50.0% |
| ! | GCCAAAACCGACTCTCAACT+AGG | - | chr8.1:47647694-47647713 | None:intergenic | 50.0% |
| AATGTCTTGCCGCGCCTTTG+TGG | + | chr8.1:47646482-47646501 | MS.gene34615:CDS | 55.0% | |
| ACCAAAGAAGAGCTTGGCGG+AGG | + | chr8.1:47646635-47646654 | MS.gene34615:CDS | 55.0% | |
| GTGGTGGCAACTTTGCAGCA+AGG | - | chr8.1:47646568-47646587 | None:intergenic | 55.0% | |
| GTTGCTAGGGACGTCTTGTG+TGG | + | chr8.1:47647904-47647923 | MS.gene34615:intron | 55.0% | |
| TCCTCCGCCAAGCTCTTCTT+TGG | - | chr8.1:47646639-47646658 | None:intergenic | 55.0% | |
| GAGCTTGGCGGAGGAGATTC+TGG | + | chr8.1:47646644-47646663 | MS.gene34615:CDS | 60.0% | |
| !! | ACTTGGTGAGGGCATCCAGC+AGG | - | chr8.1:47647384-47647403 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 47646440 | 47648908 | 47646440 | ID=MS.gene34615 |
| chr8.1 | mRNA | 47646440 | 47648908 | 47646440 | ID=MS.gene34615.t1;Parent=MS.gene34615 |
| chr8.1 | exon | 47646440 | 47646697 | 47646440 | ID=MS.gene34615.t1.exon1;Parent=MS.gene34615.t1 |
| chr8.1 | CDS | 47646440 | 47646697 | 47646440 | ID=cds.MS.gene34615.t1;Parent=MS.gene34615.t1 |
| chr8.1 | exon | 47646836 | 47647102 | 47646836 | ID=MS.gene34615.t1.exon2;Parent=MS.gene34615.t1 |
| chr8.1 | CDS | 47646836 | 47647102 | 47646836 | ID=cds.MS.gene34615.t1;Parent=MS.gene34615.t1 |
| chr8.1 | exon | 47647187 | 47647259 | 47647187 | ID=MS.gene34615.t1.exon3;Parent=MS.gene34615.t1 |
| chr8.1 | CDS | 47647187 | 47647259 | 47647187 | ID=cds.MS.gene34615.t1;Parent=MS.gene34615.t1 |
| chr8.1 | exon | 47647331 | 47647416 | 47647331 | ID=MS.gene34615.t1.exon4;Parent=MS.gene34615.t1 |
| chr8.1 | CDS | 47647331 | 47647416 | 47647331 | ID=cds.MS.gene34615.t1;Parent=MS.gene34615.t1 |
| chr8.1 | exon | 47648810 | 47648908 | 47648810 | ID=MS.gene34615.t1.exon5;Parent=MS.gene34615.t1 |
| chr8.1 | CDS | 47648810 | 47648908 | 47648810 | ID=cds.MS.gene34615.t1;Parent=MS.gene34615.t1 |
| Gene Sequence |
| Protein sequence |
