AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene34968

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34968.t1 MTR_0009s0050 49.128 344 173 2 13 355 6 348 1.33e-119 350
MS.gene34968.t1 MTR_0009s0050 49.128 344 173 2 13 355 6 348 1.74e-119 349
MS.gene34968.t1 MTR_0328s0030 49.693 326 162 2 31 355 22 346 1.55e-118 347
MS.gene34968.t1 MTR_5g055680 47.384 344 179 2 13 355 6 348 3.14e-118 346
MS.gene34968.t1 MTR_5g048570 47.965 344 175 3 13 355 6 346 1.53e-116 342
MS.gene34968.t1 MTR_5g048740 48.318 327 166 3 31 355 22 347 4.92e-116 340
MS.gene34968.t1 MTR_5g055900 47.774 337 174 2 20 355 13 348 6.06e-116 340
MS.gene34968.t1 MTR_5g055800 49.387 326 162 3 31 355 24 347 3.27e-115 338
MS.gene34968.t1 MTR_0009s0480 48.466 326 166 2 31 355 23 347 2.48e-114 336
MS.gene34968.t1 MTR_8g064200 45.507 345 185 3 13 355 16 359 3.03e-114 336
MS.gene34968.t1 MTR_8g064200 45.507 345 185 3 13 355 11 354 3.27e-114 336
MS.gene34968.t1 MTR_2g072890 50.915 328 157 3 31 355 29 355 3.96e-113 333
MS.gene34968.t1 MTR_5g048470 45.562 338 182 2 20 355 18 355 1.06e-112 332
MS.gene34968.t1 MTR_2g072910 50.000 328 160 3 31 355 28 354 3.53e-112 331
MS.gene34968.t1 MTR_5g048850 44.669 347 190 2 10 355 3 348 1.63e-109 324
MS.gene34968.t1 MTR_5g055820 44.379 338 185 3 20 355 13 349 3.39e-109 323
MS.gene34968.t1 MTR_5g048550 45.349 344 186 2 13 355 6 348 1.13e-107 319
MS.gene34968.t1 MTR_5g055690 44.540 348 190 3 10 355 3 349 2.78e-107 318
MS.gene34968.t1 MTR_1g033810 45.031 322 172 4 31 348 23 343 9.24e-96 289
MS.gene34968.t1 MTR_0009s0480 50.607 247 120 2 31 276 23 268 2.57e-88 267
MS.gene34968.t1 MTR_0009s0050 51.822 247 118 1 110 355 4 250 1.64e-87 264
MS.gene34968.t1 MTR_0009s0050 51.822 247 118 1 110 355 4 250 1.92e-87 264
MS.gene34968.t1 MTR_7g063730 38.576 337 206 1 20 355 29 365 1.99e-86 265
MS.gene34968.t1 MTR_7g062570 38.000 350 215 2 7 355 8 356 1.75e-83 258
MS.gene34968.t1 MTR_5g048850 44.815 270 147 2 10 278 3 271 2.27e-83 254
MS.gene34968.t1 MTR_0056s0160 47.845 232 120 1 125 355 2 233 2.25e-82 250
MS.gene34968.t1 MTR_2g072910 50.397 252 121 3 31 279 28 278 2.47e-82 252
MS.gene34968.t1 MTR_5g055690 44.610 269 146 3 10 276 3 270 6.57e-82 251
MS.gene34968.t1 MTR_2g437380 39.329 328 189 5 31 351 28 352 1.80e-80 250
MS.gene34968.t1 MTR_7g062600 37.278 338 210 2 20 355 16 353 1.14e-79 248
MS.gene34968.t1 MTR_7g062580 36.000 350 222 2 7 355 8 356 3.34e-78 244
MS.gene34968.t1 MTR_3g026150 38.663 344 202 6 7 345 12 351 1.01e-77 243
MS.gene34968.t1 MTR_7g062550 37.685 337 209 1 20 355 25 361 6.20e-77 241
MS.gene34968.t1 MTR_7g068650 40.000 325 186 4 37 353 37 360 1.07e-76 240
MS.gene34968.t1 MTR_4g015790 37.209 344 195 5 31 353 25 368 1.47e-72 230
MS.gene34968.t1 MTR_5g082750 35.542 332 207 3 30 354 24 355 1.25e-71 227
MS.gene34968.t1 MTR_3g117420 40.514 311 167 6 55 355 52 354 4.25e-71 226
MS.gene34968.t1 MTR_3g070860 35.843 332 204 4 31 354 26 356 2.77e-70 224
MS.gene34968.t1 MTR_7g062560 33.929 336 213 2 20 355 27 353 5.34e-70 223
MS.gene34968.t1 MTR_7g045650 41.026 273 158 3 20 290 25 296 1.31e-68 218
MS.gene34968.t1 MTR_8g074050 39.159 309 174 5 55 355 52 354 4.36e-67 215
MS.gene34968.t1 MTR_2g437380 40.323 248 146 2 106 351 11 258 1.08e-64 206
MS.gene34968.t1 MTR_0009s0050 54.762 168 76 0 188 355 1 168 7.69e-63 198
MS.gene34968.t1 MTR_8g074070 36.893 309 181 5 55 355 52 354 1.56e-61 201
MS.gene34968.t1 MTR_3g092890 34.877 324 203 6 31 351 15 333 4.62e-61 199
MS.gene34968.t1 MTR_3g026150 40.408 245 145 1 102 345 4 248 5.61e-61 196
MS.gene34968.t1 MTR_4g116010 36.538 312 188 5 48 355 43 348 1.07e-59 196
MS.gene34968.t1 MTR_5g059130 36.774 310 188 5 31 335 20 326 3.41e-59 194
MS.gene34968.t1 MTR_3g063180 33.033 333 210 6 31 353 21 350 6.57e-59 194
MS.gene34968.t1 MTR_2g069300 33.908 348 204 6 23 355 22 358 3.78e-58 192
MS.gene34968.t1 MTR_3g026150 38.182 275 161 6 7 276 12 282 2.04e-57 188
MS.gene34968.t1 MTR_8g074070 36.513 304 170 5 55 355 52 335 8.38e-56 186
MS.gene34968.t1 MTR_8g009110 32.967 364 204 11 11 355 23 365 1.19e-55 186
MS.gene34968.t1 MTR_5g059140 34.983 303 185 7 31 325 18 316 5.80e-55 183
MS.gene34968.t1 MTR_7g102820 33.618 351 199 8 31 355 38 380 1.23e-54 184
MS.gene34968.t1 MTR_2g069190 32.869 359 212 8 11 355 28 371 2.09e-54 183
MS.gene34968.t1 MTR_4g087120 36.207 290 149 6 76 342 54 330 5.95e-54 181
MS.gene34968.t1 MTR_2g069210 32.591 359 213 8 11 355 24 367 8.54e-54 181
MS.gene34968.t1 MTR_1g062110 34.278 353 212 10 18 355 26 373 1.58e-53 181
MS.gene34968.t1 MTR_8g009170 33.426 359 210 11 11 355 23 366 2.54e-53 180
MS.gene34968.t1 MTR_0009s0400 53.472 144 67 0 212 355 1 144 2.68e-53 173
MS.gene34968.t1 MTR_8g009160 31.405 363 210 10 11 355 23 364 2.86e-53 180
MS.gene34968.t1 MTR_2g069090 32.312 359 215 6 11 355 28 372 3.49e-53 180
MS.gene34968.t1 MTR_3g072820 34.727 311 195 5 31 336 18 325 5.10e-53 178
MS.gene34968.t1 MTR_0032s0040 33.240 358 209 11 11 350 23 368 7.48e-53 179
MS.gene34968.t1 MTR_3g117485 37.313 268 157 3 70 330 68 331 7.78e-53 178
MS.gene34968.t1 MTR_5g065010 34.557 327 186 9 43 355 30 342 8.18e-53 178
MS.gene34968.t1 MTR_8g028435 31.680 363 209 10 11 355 23 364 1.63e-52 178
MS.gene34968.t1 MTR_8g009090 31.653 357 217 9 11 355 23 364 1.72e-52 177
MS.gene34968.t1 MTR_8g024120 31.707 328 219 5 31 355 18 343 2.59e-52 177
MS.gene34968.t1 MTR_1g034140 32.399 321 193 9 52 355 24 337 2.80e-52 177
MS.gene34968.t1 MTR_3g072810 35.357 280 175 4 68 342 50 328 4.27e-52 176
MS.gene34968.t1 MTR_3g088565 34.354 294 174 5 54 340 2 283 4.50e-52 175
MS.gene34968.t1 MTR_8g009080 30.790 367 225 8 3 355 46 397 1.12e-51 176
MS.gene34968.t1 MTR_4g087110 34.915 295 169 8 76 355 54 340 2.49e-51 174
MS.gene34968.t1 MTR_5g011250 35.463 313 184 8 31 327 19 329 4.53e-51 174
MS.gene34968.t1 MTR_1g093120 31.148 366 228 10 3 355 16 370 4.74e-51 174
MS.gene34968.t1 MTR_4g087140 32.317 328 192 10 53 355 24 346 5.02e-51 174
MS.gene34968.t1 MTR_1g034120 30.699 329 197 9 53 355 24 347 5.19e-51 174
MS.gene34968.t1 MTR_1g093140 29.076 368 238 8 4 355 18 378 7.24e-51 174
MS.gene34968.t1 MTR_1g093110 29.204 339 219 8 31 355 43 374 7.24e-51 174
MS.gene34968.t1 MTR_1g034060 30.699 329 197 9 53 355 24 347 1.19e-50 172
MS.gene34968.t1 MTR_2g069010 32.231 363 210 9 4 346 21 367 1.70e-49 170
MS.gene34968.t1 MTR_8g041620 32.967 364 208 12 11 355 28 374 1.73e-49 170
MS.gene34968.t1 MTR_4g093840 32.927 328 204 8 38 355 45 366 2.13e-49 170
MS.gene34968.t1 MTR_2g102570 34.899 298 173 10 55 339 52 341 2.43e-49 170
MS.gene34968.t1 MTR_7g105070 29.775 356 227 9 11 355 19 362 3.07e-49 169
MS.gene34968.t1 MTR_2g068960 32.861 353 205 9 4 338 15 353 5.02e-49 169
MS.gene34968.t1 MTR_3g117485 35.659 258 155 3 80 330 6 259 5.47e-49 166
MS.gene34968.t1 MTR_7g102720 35.669 314 178 11 53 355 35 335 9.46e-49 167
MS.gene34968.t1 MTR_4g024660 30.978 368 225 12 3 355 20 373 1.47e-48 167
MS.gene34968.t1 MTR_8g008930 31.285 358 218 9 11 355 23 365 2.00e-48 167
MS.gene34968.t1 MTR_5g032870 32.609 322 200 7 32 342 17 332 3.66e-48 166
MS.gene34968.t1 MTR_8g041600 31.564 358 221 10 11 355 28 374 4.41e-48 167
MS.gene34968.t1 MTR_6g015950 33.333 318 199 7 31 342 16 326 5.34e-48 165
MS.gene34968.t1 MTR_1g048940 30.199 351 219 12 19 355 12 350 5.74e-48 166
MS.gene34968.t1 MTR_2g068950 31.714 350 213 8 4 338 15 353 1.66e-47 165
MS.gene34968.t1 MTR_4g087090 29.503 322 203 8 53 355 28 344 1.71e-47 164
MS.gene34968.t1 MTR_2g069020 31.755 359 210 10 4 344 19 360 6.28e-47 163
MS.gene34968.t1 MTR_1g070085 31.803 305 186 9 53 345 35 329 9.11e-47 162
MS.gene34968.t1 MTR_1g070085 31.803 305 186 9 53 345 35 329 9.11e-47 162
MS.gene34968.t1 MTR_2g069020 31.755 359 210 10 4 344 19 360 1.08e-46 163
MS.gene34968.t1 MTR_1g070135 31.741 293 193 6 54 342 37 326 2.80e-46 161
MS.gene34968.t1 MTR_7g056347 28.689 366 234 8 4 355 21 373 3.47e-46 161
MS.gene34968.t1 MTR_2g025120 30.164 305 194 6 52 347 1 295 4.61e-46 159
MS.gene34968.t1 MTR_8g062600 30.137 365 216 12 11 355 28 373 5.63e-46 161
MS.gene34968.t1 MTR_8g033380 33.654 312 184 7 31 327 33 336 6.73e-46 160
MS.gene34968.t1 MTR_3g043900 35.505 307 187 9 53 355 54 353 1.07e-45 159
MS.gene34968.t1 MTR_3g096500 30.938 320 205 5 13 320 27 342 1.51e-45 160
MS.gene34968.t1 MTR_3g045230 34.076 314 183 10 53 355 54 354 1.99e-45 159
MS.gene34968.t1 MTR_7g029655 30.769 364 217 10 11 355 23 370 3.02e-45 159
MS.gene34968.t1 MTR_4g087100 32.508 323 185 10 56 355 33 345 3.56e-45 158
MS.gene34968.t1 MTR_2g069060 32.609 322 191 10 47 355 41 349 3.78e-45 158
MS.gene34968.t1 MTR_4g117880 32.558 344 198 13 11 338 23 348 5.12e-45 158
MS.gene34968.t1 MTR_3g091350 32.268 313 190 9 54 354 58 360 5.86e-45 158
MS.gene34968.t1 MTR_7g081710 27.933 358 242 8 5 355 3 351 7.36e-45 157
MS.gene34968.t1 MTR_1g043810 29.462 353 231 7 11 355 15 357 1.30e-44 157
MS.gene34968.t1 MTR_3g088745 34.146 328 189 10 31 339 16 335 2.12e-44 156
MS.gene34968.t1 MTR_1g032140 31.105 344 221 8 11 348 25 358 2.37e-44 156
MS.gene34968.t1 MTR_1g070080 32.831 332 201 10 27 350 15 332 2.96e-44 155
MS.gene34968.t1 MTR_8g469400 31.768 362 201 14 11 355 28 360 6.25e-44 155
MS.gene34968.t1 MTR_1g102070 30.267 337 215 7 19 339 26 358 8.00e-44 155
MS.gene34968.t1 MTR_8g075890 31.776 321 205 8 28 337 13 330 8.89e-44 155
MS.gene34968.t1 MTR_1g043770 31.638 354 220 9 11 355 15 355 1.47e-43 154
MS.gene34968.t1 MTR_1g043760 30.769 351 214 10 11 348 15 349 1.91e-43 154
MS.gene34968.t1 MTR_3g083370 28.239 301 203 6 52 347 1 293 2.80e-43 152
MS.gene34968.t1 MTR_5g085330 30.742 283 184 4 71 347 22 298 3.26e-43 152
MS.gene34968.t1 MTR_5g022020 32.063 315 196 9 35 336 20 329 3.82e-43 153
MS.gene34968.t1 MTR_1g070120 30.375 293 197 6 54 342 37 326 4.55e-43 152
MS.gene34968.t1 MTR_4g115990 33.446 296 172 5 39 330 30 304 5.26e-43 152
MS.gene34968.t1 MTR_3g058610 31.481 324 204 8 37 354 27 338 6.16e-43 152
MS.gene34968.t1 MTR_7g016090 30.960 323 199 10 31 342 18 327 7.86e-43 152
MS.gene34968.t1 MTR_4g087130 36.299 281 160 6 76 342 54 329 8.60e-43 152
MS.gene34968.t1 MTR_2g083000 31.271 291 180 6 53 337 31 307 8.90e-43 151
MS.gene34968.t1 MTR_7g016090 30.960 323 199 10 31 342 16 325 9.97e-43 151
MS.gene34968.t1 MTR_2g068840 30.556 360 224 12 9 355 15 361 1.11e-42 152
MS.gene34968.t1 MTR_3g091360 31.511 311 195 8 54 354 51 353 1.28e-42 152
MS.gene34968.t1 MTR_1g043775 30.508 354 226 8 11 355 15 357 1.36e-42 151
MS.gene34968.t1 MTR_7g451860 32.082 293 174 7 55 337 41 318 2.40e-42 150
MS.gene34968.t1 MTR_7g047670 32.082 293 174 7 55 337 41 318 2.40e-42 150
MS.gene34968.t1 MTR_6g464620 30.383 339 212 10 19 339 31 363 2.58e-42 151
MS.gene34968.t1 MTR_8g009150 29.781 366 193 12 11 355 23 345 4.70e-42 150
MS.gene34968.t1 MTR_5g032880 29.664 327 213 7 32 351 17 333 6.50e-42 155
MS.gene34968.t1 MTR_5g032880 30.864 324 210 6 29 342 351 670 9.28e-42 155
MS.gene34968.t1 MTR_8g075830 32.234 273 177 4 72 337 59 330 9.18e-42 149
MS.gene34968.t1 MTR_4g119410 30.032 313 203 6 54 355 66 373 9.70e-42 150
MS.gene34968.t1 MTR_1g081840 31.392 309 195 6 26 322 28 331 1.26e-41 149
MS.gene34968.t1 MTR_7g056393 29.315 365 233 10 4 355 21 373 2.08e-41 149
MS.gene34968.t1 MTR_8g063070 27.762 353 232 8 11 351 28 369 3.06e-41 148
MS.gene34968.t1 MTR_6g092620 34.164 281 163 7 54 323 2 271 3.23e-41 146
MS.gene34968.t1 MTR_8g006930 29.839 372 222 13 4 355 21 373 6.27e-41 147
MS.gene34968.t1 MTR_1g032250 30.409 342 224 8 11 347 32 364 1.27e-40 147
MS.gene34968.t1 MTR_2g083030 32.082 293 176 7 53 337 35 312 3.31e-40 144
MS.gene34968.t1 MTR_7g078010 30.352 369 224 11 4 355 21 373 1.73e-39 144
MS.gene34968.t1 MTR_1g032220 30.058 346 222 9 11 348 32 365 2.63e-39 143
MS.gene34968.t1 MTR_7g016080 29.394 330 207 9 31 351 16 328 5.38e-39 141
MS.gene34968.t1 MTR_5g005570 32.082 293 171 8 55 337 37 311 7.46e-39 141
MS.gene34968.t1 MTR_1g070185 27.701 361 239 8 3 355 21 367 1.35e-38 141
MS.gene34968.t1 MTR_8g009120 30.245 367 198 13 11 355 23 353 2.03e-38 140
MS.gene34968.t1 MTR_1g070085 32.589 224 140 5 127 345 34 251 8.30e-38 136
MS.gene34968.t1 MTR_1g062110 33.893 298 176 11 18 299 26 318 1.35e-37 137
MS.gene34968.t1 MTR_1g070100 33.333 222 137 5 127 343 30 245 1.53e-37 135
MS.gene34968.t1 MTR_2g019370 29.904 311 193 8 49 344 22 322 2.26e-37 137
MS.gene34968.t1 MTR_1g011580 30.435 299 194 8 55 350 63 350 4.13e-36 134
MS.gene34968.t1 MTR_3g464530 31.365 271 164 7 41 303 23 279 2.34e-35 132
MS.gene34968.t1 MTR_4g074130 28.671 286 188 8 55 335 40 314 1.48e-34 130
MS.gene34968.t1 MTR_8g093930 26.667 345 235 6 6 338 1 339 1.51e-34 130
MS.gene34968.t1 MTR_0009s0410 44.203 138 75 2 31 167 23 159 2.00e-34 124
MS.gene34968.t1 MTR_7g056353 33.096 281 160 9 89 354 79 346 3.40e-33 129
MS.gene34968.t1 MTR_2g072930 50.833 120 56 2 47 163 43 162 4.54e-33 121
MS.gene34968.t1 MTR_8g009170 32.526 289 168 10 11 287 23 296 1.09e-32 124
MS.gene34968.t1 MTR_4g123020 29.268 328 203 13 42 354 6 319 2.48e-32 123
MS.gene34968.t1 MTR_1g086550 28.395 324 198 12 55 355 20 332 2.87e-32 124
MS.gene34968.t1 MTR_2g025120 30.472 233 144 5 52 276 1 223 7.29e-32 119
MS.gene34968.t1 MTR_8g009180 32.051 234 141 4 138 355 63 294 9.41e-32 121
MS.gene34968.t1 MTR_8g461330 29.097 299 189 8 74 354 41 334 1.15e-31 122
MS.gene34968.t1 MTR_8g009080 30.034 293 177 9 3 283 46 322 4.79e-31 120
MS.gene34968.t1 MTR_2g033270 30.526 285 172 10 74 344 35 307 5.59e-31 120
MS.gene34968.t1 MTR_8g041600 31.636 275 168 9 11 276 28 291 8.90e-31 119
MS.gene34968.t1 MTR_8g009080 29.893 281 171 7 3 272 46 311 4.62e-30 117
MS.gene34968.t1 MTR_1g070135 31.718 227 148 6 54 276 37 260 5.62e-30 116
MS.gene34968.t1 MTR_8g093980 28.829 333 213 9 21 337 28 352 9.82e-30 117
MS.gene34968.t1 MTR_2g070870 28.621 290 191 7 74 353 42 325 6.27e-29 114
MS.gene34968.t1 MTR_1g043810 29.259 270 176 6 11 275 15 274 7.99e-29 114
MS.gene34968.t1 MTR_2g068800 30.068 296 168 12 9 294 15 281 4.68e-28 111
MS.gene34968.t1 MTR_3g083370 26.522 230 157 5 52 276 1 223 5.57e-28 109
MS.gene34968.t1 MTR_1g043775 31.136 273 167 9 11 275 15 274 9.12e-28 110
MS.gene34968.t1 MTR_4g096840 26.855 283 192 7 74 344 43 322 1.22e-27 111
MS.gene34968.t1 MTR_2g069060 32.645 242 139 8 47 276 19 248 2.07e-27 108
MS.gene34968.t1 MTR_3g464530 29.918 244 149 7 41 276 23 252 3.62e-27 108
MS.gene34968.t1 MTR_4g132770 34.752 141 90 1 205 343 22 162 6.98e-27 104
MS.gene34968.t1 MTR_4g100600 29.766 299 186 11 54 335 8 299 9.27e-27 108
MS.gene34968.t1 MTR_7g090520 30.032 313 201 7 53 355 8 312 3.29e-26 107
MS.gene34968.t1 MTR_1g043770 31.365 271 167 8 11 275 15 272 3.81e-26 106
MS.gene34968.t1 MTR_3g040410 28.938 273 178 9 71 337 27 289 1.58e-25 105
MS.gene34968.t1 MTR_7g078010 29.225 284 174 9 4 276 21 288 4.89e-25 103
MS.gene34968.t1 MTR_1g070110 29.339 242 134 5 101 341 15 220 5.56e-25 101
MS.gene34968.t1 MTR_1g027290 26.625 323 206 11 53 355 27 338 5.87e-24 101
MS.gene34968.t1 MTR_6g088665 29.452 292 179 9 68 335 32 320 1.04e-23 100
MS.gene34968.t1 MTR_8g102600 29.180 305 166 14 71 342 26 313 1.15e-23 100
MS.gene34968.t1 MTR_6g088665 28.669 293 181 8 68 335 32 321 1.49e-23 100
MS.gene34968.t1 MTR_4g100590 30.605 281 158 12 77 335 29 294 1.37e-22 97.1
MS.gene34968.t1 MTR_5g025090 23.203 306 221 6 53 355 3 297 1.67e-22 96.3
MS.gene34968.t1 MTR_8g030880 26.667 315 206 10 51 353 6 307 4.14e-22 95.5
MS.gene34968.t1 MTR_4g011720 28.094 299 200 7 53 342 7 299 1.42e-20 91.3
MS.gene34968.t1 MTR_1g027310 26.045 311 181 9 53 355 47 316 6.38e-20 89.4
MS.gene34968.t1 MTR_1g043840 30.052 193 121 4 156 335 32 223 2.18e-19 88.2
MS.gene34968.t1 MTR_3g108520 28.674 279 181 9 73 341 33 303 1.09e-18 85.9
MS.gene34968.t1 MTR_7g077670 28.428 299 185 11 55 338 11 295 1.44e-18 85.5
MS.gene34968.t1 MTR_5g027230 24.055 291 197 8 53 335 4 278 2.78e-18 84.7
MS.gene34968.t1 MTR_4g011690 26.861 309 204 10 45 341 1 299 1.54e-17 82.4
MS.gene34968.t1 MTR_4g021360 25.166 302 202 10 55 340 7 300 2.10e-17 82.0
MS.gene34968.t1 MTR_6g035160 33.333 165 104 5 180 341 4 165 5.32e-16 75.5
MS.gene34968.t1 MTR_5g024940 25.000 296 185 8 53 343 4 267 7.13e-16 77.4
MS.gene34968.t1 MTR_4g100590 30.556 252 138 12 106 335 11 247 2.25e-15 75.5
MS.gene34968.t1 MTR_8g102600 28.413 271 144 14 105 342 10 263 6.63e-15 74.3
MS.gene34968.t1 MTR_4g021380 26.154 325 195 12 55 353 7 312 2.56e-14 73.2
MS.gene34968.t1 MTR_4g100600 27.830 212 135 9 54 253 8 213 7.55e-13 67.8
MS.gene34968.t1 MTR_7g056370 30.579 121 78 2 77 195 71 187 1.91e-11 63.5
MS.gene34968.t1 MTR_1g032240 39.785 93 45 3 214 305 63 145 2.27e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34968.t1 AT1G78550 50.000 340 167 2 19 355 17 356 1.35e-113 334
MS.gene34968.t1 AT1G17020 47.674 344 173 4 18 355 16 358 1.60e-112 332
MS.gene34968.t1 AT4G25310 54.514 288 126 3 70 355 69 353 4.86e-106 315
MS.gene34968.t1 AT4G25300 44.663 356 191 4 5 355 2 356 4.02e-104 310
MS.gene34968.t1 AT1G17010 45.773 343 181 4 18 355 16 358 4.94e-103 308
MS.gene34968.t1 AT1G78550 52.920 274 128 1 83 355 5 278 6.36e-99 294
MS.gene34968.t1 AT4G25310 49.826 287 113 4 70 355 69 325 2.95e-86 263
MS.gene34968.t1 AT3G21420 41.040 346 194 6 20 355 17 362 4.19e-84 259
MS.gene34968.t1 AT3G11180 39.535 301 179 2 54 351 94 394 1.29e-75 239
MS.gene34968.t1 AT3G11180 40.702 285 166 2 54 335 94 378 4.18e-73 232
MS.gene34968.t1 AT5G05600 35.671 328 204 3 31 351 38 365 1.04e-72 230
MS.gene34968.t1 AT2G38240 35.061 328 207 4 31 353 23 349 1.01e-71 227
MS.gene34968.t1 AT3G55970 36.499 337 202 7 30 354 24 360 4.39e-70 223
MS.gene34968.t1 AT5G20400 35.652 345 210 7 19 355 8 348 1.43e-66 214
MS.gene34968.t1 AT1G49390 36.336 333 203 6 30 355 18 348 2.04e-66 213
MS.gene34968.t1 AT5G54000 38.065 310 185 4 51 355 42 349 4.30e-66 213
MS.gene34968.t1 AT5G20550 36.471 340 191 9 19 341 8 339 1.72e-62 203
MS.gene34968.t1 AT5G54000 38.376 271 163 3 87 355 1 269 2.41e-59 192
MS.gene34968.t1 AT4G16330 34.494 316 192 6 44 353 56 362 2.52e-59 196
MS.gene34968.t1 AT1G49390 36.900 271 167 3 87 355 1 269 3.63e-59 192
MS.gene34968.t1 AT4G25300 50.000 190 94 1 167 355 73 262 8.55e-59 191
MS.gene34968.t1 AT1G06640 32.533 375 213 12 3 355 13 369 2.14e-55 186
MS.gene34968.t1 AT3G19000 35.873 315 179 8 55 351 32 341 4.77e-55 184
MS.gene34968.t1 AT5G24530 33.028 327 208 7 31 351 15 336 6.77e-54 181
MS.gene34968.t1 AT3G19010 33.542 319 190 7 50 351 23 336 9.77e-54 181
MS.gene34968.t1 AT3G19010 33.542 319 190 7 50 351 23 336 9.77e-54 181
MS.gene34968.t1 AT1G06650 31.452 372 221 13 3 355 13 369 1.13e-53 181
MS.gene34968.t1 AT3G13610 33.065 372 217 13 1 355 5 361 1.13e-53 181
MS.gene34968.t1 AT5G59540 31.768 362 215 10 11 355 20 366 1.41e-53 181
MS.gene34968.t1 AT5G08640 35.144 313 193 6 30 336 18 326 1.05e-52 177
MS.gene34968.t1 AT5G08640 35.144 313 193 6 30 336 18 326 1.05e-52 177
MS.gene34968.t1 AT1G55290 35.417 336 195 13 31 355 37 361 2.21e-52 177
MS.gene34968.t1 AT1G06620 31.319 364 211 8 11 355 22 365 5.51e-52 176
MS.gene34968.t1 AT5G59530 33.058 363 198 12 16 355 24 364 7.24e-52 176
MS.gene34968.t1 AT1G04380 32.268 313 190 5 54 355 44 345 1.91e-51 174
MS.gene34968.t1 AT1G77330 36.462 277 148 7 54 315 2 265 4.21e-51 172
MS.gene34968.t1 AT1G04350 30.939 362 215 9 11 355 17 360 3.76e-50 171
MS.gene34968.t1 AT4G22880 33.962 318 187 9 29 327 16 329 4.63e-50 171
MS.gene34968.t1 AT4G22880 33.962 318 187 9 29 327 16 329 4.63e-50 171
MS.gene34968.t1 AT4G22880 33.962 318 187 9 29 327 16 329 4.63e-50 171
MS.gene34968.t1 AT4G10500 30.952 336 214 7 29 354 18 345 6.99e-50 171
MS.gene34968.t1 AT2G36690 32.353 340 207 9 31 355 32 363 7.21e-50 171
MS.gene34968.t1 AT2G36690 32.353 340 207 9 31 355 32 363 7.21e-50 171
MS.gene34968.t1 AT5G43440 32.320 362 216 12 10 355 17 365 1.10e-49 171
MS.gene34968.t1 AT1G06645 29.508 366 233 9 3 355 26 379 7.76e-49 169
MS.gene34968.t1 AT4G10490 29.787 329 224 6 31 354 18 344 2.83e-48 166
MS.gene34968.t1 AT1G03410 32.055 365 226 10 3 355 7 361 4.03e-48 166
MS.gene34968.t1 AT5G43450 31.233 365 213 12 10 355 17 362 6.17e-48 166
MS.gene34968.t1 AT3G55970 36.680 259 152 7 30 276 24 282 7.69e-48 164
MS.gene34968.t1 AT1G03410 32.055 365 226 10 3 355 44 398 8.43e-48 166
MS.gene34968.t1 AT4G16330 36.078 255 152 5 105 353 7 256 1.98e-47 161
MS.gene34968.t1 AT1G03400 31.921 354 214 9 3 346 7 343 2.27e-47 164
MS.gene34968.t1 AT2G30830 30.919 359 208 11 16 355 21 358 7.52e-47 163
MS.gene34968.t1 AT3G61400 31.635 373 219 14 4 355 13 370 1.26e-46 162
MS.gene34968.t1 AT5G05600 32.806 253 163 3 31 276 38 290 1.84e-46 160
MS.gene34968.t1 AT3G19010 31.975 319 165 8 50 351 23 306 1.40e-45 158
MS.gene34968.t1 AT5G07200 30.861 337 210 8 22 339 28 360 1.93e-45 160
MS.gene34968.t1 AT4G25420 32.432 333 205 10 28 345 37 364 6.36e-45 158
MS.gene34968.t1 AT1G12010 28.716 296 199 5 56 347 8 295 9.72e-45 156
MS.gene34968.t1 AT2G30840 29.679 374 223 12 3 355 8 362 1.30e-44 157
MS.gene34968.t1 AT1G05010 31.169 308 191 7 52 347 1 299 1.32e-44 156
MS.gene34968.t1 AT1G15550 33.088 272 171 7 72 335 69 337 1.10e-43 154
MS.gene34968.t1 AT3G60290 29.483 329 208 9 37 354 38 353 1.94e-43 154
MS.gene34968.t1 AT4G21200 32.997 297 184 6 55 344 42 330 2.39e-43 153
MS.gene34968.t1 AT2G19590 35.531 273 157 7 55 319 11 272 3.16e-43 152
MS.gene34968.t1 AT2G44800 28.704 324 219 7 30 344 23 343 8.08e-43 152
MS.gene34968.t1 AT1G62380 29.514 288 191 5 56 339 8 287 1.13e-42 151
MS.gene34968.t1 AT1G60980 30.028 353 217 9 9 345 23 361 5.90e-42 150
MS.gene34968.t1 AT1G03400 29.581 382 214 10 3 346 7 371 1.37e-41 149
MS.gene34968.t1 AT3G51240 30.892 314 203 7 37 344 26 331 2.78e-41 148
MS.gene34968.t1 AT2G30840 29.412 374 218 13 3 355 8 356 4.73e-41 147
MS.gene34968.t1 AT5G63590 33.904 292 174 9 55 335 14 297 6.38e-40 143
MS.gene34968.t1 AT3G12900 30.395 329 218 7 31 354 33 355 6.92e-40 144
MS.gene34968.t1 AT1G80340 31.208 298 184 8 46 335 46 330 8.40e-40 144
MS.gene34968.t1 AT5G51810 31.790 324 198 10 31 339 42 357 2.47e-39 143
MS.gene34968.t1 AT1G78440 31.148 305 186 9 55 345 18 312 4.25e-39 142
MS.gene34968.t1 AT5G07480 30.312 320 195 11 55 355 44 354 5.86e-39 142
MS.gene34968.t1 AT1G50960 31.818 264 168 4 55 312 40 297 3.83e-38 139
MS.gene34968.t1 AT1G80330 29.841 315 193 8 35 335 33 333 4.69e-38 139
MS.gene34968.t1 AT4G21690 31.636 275 172 6 74 335 61 332 1.17e-37 138
MS.gene34968.t1 AT3G19000 32.917 240 141 7 55 276 32 269 2.62e-37 135
MS.gene34968.t1 AT2G19590 35.000 240 144 5 84 319 26 257 3.15e-37 136
MS.gene34968.t1 AT5G63600 29.329 283 192 5 55 335 33 309 9.69e-37 135
MS.gene34968.t1 AT5G63600 29.577 284 191 6 55 335 33 310 2.69e-36 134
MS.gene34968.t1 AT3G49620 34.848 264 140 7 73 314 63 316 5.28e-36 134
MS.gene34968.t1 AT2G25450 27.838 370 232 12 3 355 8 359 3.24e-35 132
MS.gene34968.t1 AT3G19010 31.837 245 148 6 50 277 23 265 3.93e-35 130
MS.gene34968.t1 AT1G44090 32.573 307 183 9 31 322 43 340 5.33e-35 132
MS.gene34968.t1 AT1G06640 31.959 291 162 10 3 275 13 285 5.39e-35 130
MS.gene34968.t1 AT1G06640 31.849 292 163 10 3 276 13 286 5.96e-35 129
MS.gene34968.t1 AT2G34555 28.966 290 188 8 55 335 27 307 5.74e-34 128
MS.gene34968.t1 AT1G47990 28.155 309 192 12 53 344 13 308 1.69e-33 126
MS.gene34968.t1 AT1G02400 29.487 312 195 12 49 345 18 319 1.83e-33 127
MS.gene34968.t1 AT1G06650 29.592 294 177 11 3 281 13 291 5.17e-33 125
MS.gene34968.t1 AT4G25420 32.184 261 160 9 28 276 37 292 1.21e-32 124
MS.gene34968.t1 AT1G30040 26.733 303 201 9 53 344 29 321 3.03e-32 124
MS.gene34968.t1 AT3G50210 31.313 297 164 9 52 314 5 295 7.13e-32 122
MS.gene34968.t1 AT3G50210 31.313 297 164 9 52 314 5 295 7.13e-32 122
MS.gene34968.t1 AT3G50210 31.313 297 164 9 52 314 5 295 7.13e-32 122
MS.gene34968.t1 AT3G49630 30.769 299 164 9 49 314 3 291 9.90e-32 122
MS.gene34968.t1 AT3G51240 33.023 215 140 3 105 316 7 220 1.58e-31 120
MS.gene34968.t1 AT3G49630 31.579 266 150 7 71 314 32 287 2.53e-31 121
MS.gene34968.t1 AT1G06620 30.175 285 155 8 11 275 22 282 8.65e-31 118
MS.gene34968.t1 AT5G43440 32.270 282 165 11 10 278 17 285 1.88e-30 117
MS.gene34968.t1 AT1G04380 31.330 233 141 4 54 278 44 265 1.93e-30 117
MS.gene34968.t1 AT5G12270 29.932 294 189 8 73 355 72 359 5.91e-30 118
MS.gene34968.t1 AT5G51810 31.923 260 158 9 31 279 42 293 5.18e-29 114
MS.gene34968.t1 AT5G59540 29.286 280 169 9 11 276 20 284 6.19e-29 113
MS.gene34968.t1 AT5G43450 30.037 273 157 10 18 275 26 279 9.72e-29 113
MS.gene34968.t1 AT3G61400 30.345 290 171 11 4 276 13 288 1.13e-28 113
MS.gene34968.t1 AT5G63595 29.151 271 164 7 43 309 13 259 1.97e-28 112
MS.gene34968.t1 AT5G07480 30.332 211 137 4 153 355 37 245 2.09e-28 111
MS.gene34968.t1 AT5G43935 28.720 289 177 8 53 335 17 282 1.68e-27 110
MS.gene34968.t1 AT2G30840 28.522 291 171 10 3 275 8 279 2.63e-26 107
MS.gene34968.t1 AT4G23340 33.103 290 158 11 77 347 30 302 3.51e-26 107
MS.gene34968.t1 AT3G46500 28.710 310 196 11 48 335 2 308 3.13e-25 104
MS.gene34968.t1 AT3G47190 29.242 277 145 9 55 303 32 285 4.89e-25 103
MS.gene34968.t1 AT5G63580 28.571 224 152 6 53 272 17 236 8.48e-23 95.9
MS.gene34968.t1 AT5G63580 28.571 224 152 6 53 272 17 236 9.56e-23 95.9
MS.gene34968.t1 AT3G46500 29.856 278 170 11 48 303 2 276 3.03e-22 95.5
MS.gene34968.t1 AT1G52820 29.139 302 194 10 51 341 9 301 9.39e-22 94.7
MS.gene34968.t1 AT1G30040 27.660 235 149 9 53 276 29 253 4.98e-21 91.7
MS.gene34968.t1 AT3G50210 33.939 165 103 3 156 314 49 213 4.73e-20 88.6
MS.gene34968.t1 AT1G14130 25.753 299 200 9 55 345 9 293 5.02e-20 89.7
MS.gene34968.t1 AT3G49630 33.544 158 102 3 159 314 62 218 7.86e-20 88.2
MS.gene34968.t1 AT3G46490 27.673 318 200 8 45 335 1 315 7.94e-20 89.4
MS.gene34968.t1 AT1G02400 27.344 256 166 10 49 292 18 265 1.56e-19 87.4
MS.gene34968.t1 AT3G46490 28.621 290 177 8 45 307 1 287 5.84e-19 86.7
MS.gene34968.t1 AT5G58660 26.502 283 162 9 54 303 33 302 2.73e-18 85.5
MS.gene34968.t1 AT4G16765 32.178 202 122 7 151 340 42 240 3.06e-18 83.6
MS.gene34968.t1 AT4G16765 32.178 202 122 7 151 340 42 240 3.06e-18 83.6
MS.gene34968.t1 AT4G16765 32.178 202 122 7 151 340 42 240 3.06e-18 83.6
MS.gene34968.t1 AT1G14120 26.332 319 193 9 55 355 8 302 5.94e-18 84.0
MS.gene34968.t1 AT1G14120 26.332 319 193 9 55 355 8 302 5.94e-18 84.0
MS.gene34968.t1 AT1G14120 26.332 319 193 9 55 355 8 302 5.94e-18 84.0
MS.gene34968.t1 AT4G23340 35.838 173 98 5 180 347 20 184 1.08e-17 80.9
MS.gene34968.t1 AT1G35190 30.651 261 128 12 68 303 23 255 4.63e-17 81.3
MS.gene34968.t1 AT4G16765 31.884 207 114 9 151 345 42 233 1.85e-16 78.2
MS.gene34968.t1 AT1G35190 30.418 263 149 11 68 303 23 278 3.87e-16 79.0
MS.gene34968.t1 AT1G52800 27.376 263 165 11 77 328 38 285 1.21e-15 77.0
MS.gene34968.t1 AT1G28030 28.378 296 195 11 45 328 3 293 1.85e-15 76.6
MS.gene34968.t1 AT4G03070 27.124 306 187 12 55 339 14 304 7.15e-14 72.0
MS.gene34968.t1 AT4G16770 29.858 211 127 9 77 269 42 249 1.97e-13 70.1
MS.gene34968.t1 AT4G22870 42.857 84 47 1 245 327 2 85 2.77e-13 66.2
MS.gene34968.t1 AT5G58660 25.287 261 148 9 54 282 33 278 5.25e-13 68.9
MS.gene34968.t1 AT4G16765 35.833 120 70 3 226 340 77 194 6.85e-13 67.4
MS.gene34968.t1 AT3G46500 26.984 189 125 6 170 350 1 184 2.77e-12 65.5
MS.gene34968.t1 AT4G22870 40.230 87 48 2 245 327 40 126 1.09e-11 62.8

Find 69 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAATTTCTGCTTCAAATT+TGG 0.136100 4.4:-17922409 None:intergenic
TTCCTTCATATCCATCTTTA+TGG 0.137991 4.4:-17921592 None:intergenic
ACCAAATTTGAAGCAGAAAT+TGG 0.176209 4.4:+17922408 MS.gene34968:CDS
GAGAGCACTCATTCAATTCT+TGG 0.207479 4.4:+17920635 MS.gene34968:CDS
AGGATTGAGGGTTCTTTATC+TGG 0.219371 4.4:-17920716 None:intergenic
ACCATCCTTAATCAGCTTAA+TGG 0.230605 4.4:+17921729 MS.gene34968:CDS
CAACTCCATTAAGCTGATTA+AGG 0.246921 4.4:-17921734 None:intergenic
TCATTCAATTCTTGGTGTTA+TGG 0.254788 4.4:+17920643 MS.gene34968:CDS
AGATTAAGAAAGATGGAGTT+TGG 0.278559 4.4:+17921766 MS.gene34968:CDS
CAAAGATTGGGGTTTCTTCC+AGG 0.305283 4.4:+17920838 MS.gene34968:CDS
TTTGTTCAAAAGCATGTTGA+TGG 0.327425 4.4:+17922467 MS.gene34968:CDS
TGTGGCTTTCTTCTTGCAAT+AGG 0.330734 4.4:-17921291 None:intergenic
GAACTTATCAAACTCTTTGC+TGG 0.345699 4.4:-17922432 None:intergenic
CGTCGACGAGCTCCGGTTGC+GGG 0.349345 4.4:-17921674 None:intergenic
AGTGATTAATAAACCCGAAA+TGG 0.356205 4.4:+17920670 MS.gene34968:CDS
ATGATGGAAATCAATCAATA+AGG 0.373969 4.4:+17921631 MS.gene34968:CDS
TATTCTCAGCATGCAAAGAT+TGG 0.378321 4.4:+17920825 MS.gene34968:CDS
AGGGATTGGTTTCATTTGAT+AGG 0.395413 4.4:-17920736 None:intergenic
ATTCTCAGCATGCAAAGATT+GGG 0.402514 4.4:+17920826 MS.gene34968:CDS
ACGAGCTCCGGTTGCGGGCA+TGG 0.404443 4.4:-17921669 None:intergenic
GGACTAGAGATTAAGAAAGA+TGG 0.432535 4.4:+17921759 MS.gene34968:CDS
GGGAATTGATTGCAAGGGAT+TGG 0.443437 4.4:-17920750 None:intergenic
CCGTCGACGAGCTCCGGTTG+CGG 0.448496 4.4:-17921675 None:intergenic
CTATCCGCCATGCCCGCAAC+CGG 0.448538 4.4:+17921662 MS.gene34968:CDS
GTTTCATTTGATAGGATTGA+GGG 0.453458 4.4:-17920728 None:intergenic
AGTATTGTCACCACATATCA+AGG 0.455503 4.4:-17920789 None:intergenic
AATCAGCTTAATGGAGTTGA+AGG 0.457519 4.4:+17921738 MS.gene34968:CDS
GATAAGCACCTTAGTGATGA+TGG 0.459040 4.4:-17921330 None:intergenic
GTGATTAATAAACCCGAAAT+GGG 0.460139 4.4:+17920671 MS.gene34968:CDS
ATATTAACTACAAAAGCATC+TGG 0.461880 4.4:-17921807 None:intergenic
GGTTTCATTTGATAGGATTG+AGG 0.471046 4.4:-17920729 None:intergenic
ATCTTAGAATTGAAGAAACT+TGG 0.471265 4.4:+17921540 MS.gene34968:CDS
AGCCATAAAGATGGATATGA+AGG 0.476955 4.4:+17921590 MS.gene34968:CDS
TACAAAAGCATCTGGAAGAA+AGG 0.481736 4.4:-17921799 None:intergenic
TTGATGCCGTCGACGAGCTC+CGG 0.485676 4.4:-17921681 None:intergenic
ATGCCGGAGCCGTCGGAGTG+AGG 0.487266 4.4:-17921705 None:intergenic
GTAGAGAATATGTTTGATGA+TGG 0.488444 4.4:+17921615 MS.gene34968:CDS
TCTAAATGGGAAGACAAACT+TGG 0.498065 4.4:+17922521 MS.gene34968:CDS
AATCAACATGGCATCATCTC+AGG 0.499386 4.4:+17920598 None:intergenic
AACCCTCACTCCGACGGCTC+CGG 0.507522 4.4:+17921702 MS.gene34968:CDS
AGTTAATATTGGAGACATCA+TGG 0.510828 4.4:+17921821 MS.gene34968:CDS
GGATTGAGGGTTCTTTATCT+GGG 0.512187 4.4:-17920715 None:intergenic
TGCCGGAGCCGTCGGAGTGA+GGG 0.514870 4.4:-17921704 None:intergenic
GACTTTCAAACCTTGATATG+TGG 0.523264 4.4:+17920779 MS.gene34968:CDS
CTGATTAAGGATGGTTATGC+CGG 0.526310 4.4:-17921721 None:intergenic
GGTTTCAGTAAACAAAGAAA+AGG 0.544690 4.4:+17922356 MS.gene34968:CDS
ATTGGGAAAAGCCATAAAGA+TGG 0.547819 4.4:+17921581 MS.gene34968:CDS
AGACAAACTTGGAGAGAATG+AGG 0.547939 4.4:+17922532 MS.gene34968:CDS
GATGGTTATGCCGGAGCCGT+CGG 0.550223 4.4:-17921712 None:intergenic
TCCATTAAGCTGATTAAGGA+TGG 0.551241 4.4:-17921730 None:intergenic
CTCAACTCCCATCATCACTA+AGG 0.551331 4.4:+17921322 MS.gene34968:CDS
TCTACTCTAGCATAGAGCAC+AGG 0.552312 4.4:+17922334 MS.gene34968:CDS
GCATATGTGAAGGGATACCT+TGG 0.558232 4.4:+17921509 MS.gene34968:intron
TTCTCAGCATGCAAAGATTG+GGG 0.568244 4.4:+17920827 MS.gene34968:CDS
CTTAGTGATGATGGGAGTTG+AGG 0.569423 4.4:-17921321 None:intergenic
CCGCAACCGGAGCTCGTCGA+CGG 0.573036 4.4:+17921675 MS.gene34968:CDS
GGAGCTGTCATTAGATGTGA+AGG 0.581827 4.4:+17921225 MS.gene34968:CDS
TTCTAAGATATATGACTCCA+AGG 0.586022 4.4:-17921526 None:intergenic
ATAAGCACCTTAGTGATGAT+GGG 0.587837 4.4:-17921329 None:intergenic
TATATGCAGGTGGTGAATCA+CGG 0.608081 4.4:+17921090 MS.gene34968:intron
GCATCTGGAAGAAAGGTCAC+AGG 0.608787 4.4:-17921792 None:intergenic
CTACTCTAGCATAGAGCACA+GGG 0.608995 4.4:+17922335 MS.gene34968:CDS
AAAACGGGAATTGATTGCAA+GGG 0.620044 4.4:-17920755 None:intergenic
GGCATCAACCCTCACTCCGA+CGG 0.624424 4.4:+17921696 MS.gene34968:CDS
AGCTCCGGTTGCGGGCATGG+CGG 0.627520 4.4:-17921666 None:intergenic
CAACATGGCATCATCTCAGG+TGG 0.641861 4.4:+17920601 None:intergenic
TTTACAGATTCTAAGCAATG+GGG 0.672405 4.4:+17922311 MS.gene34968:intron
ACAAAATACAAAATAAGACA+AGG 0.680547 4.4:+17921186 MS.gene34968:CDS
TAATATTGGAGACATCATGG+AGG 0.791305 4.4:+17921824 MS.gene34968:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATATATAGTATCTAATT+AGG - chr4.4:17921466-17921485 None:intergenic 10.0%
!! TGAATATATATCTTAAAAAT+TGG + chr4.4:17920947-17920966 MS.gene34968:intron 10.0%
!! AGTTGAATAAAAATTACATA+TGG - chr4.4:17921415-17921434 None:intergenic 15.0%
!! ATTTATATAATAGGTATAGT+AGG - chr4.4:17921938-17921957 None:intergenic 15.0%
!!! ATTTCTTGAAAAAAAGTATT+TGG - chr4.4:17922502-17922521 None:intergenic 15.0%
!!! GTTTTTGCATTTTTTTTTTA+TGG + chr4.4:17921036-17921055 MS.gene34968:intron 15.0%
!!! TTATCTTTTTGATACAATAA+TGG - chr4.4:17922034-17922053 None:intergenic 15.0%
!!! TTTTTTCAAGAAATCTAAAT+GGG + chr4.4:17922508-17922527 MS.gene34968:CDS 15.0%
!!! TTTTTTTCAAGAAATCTAAA+TGG + chr4.4:17922507-17922526 MS.gene34968:CDS 15.0%
!! ACAAAATACAAAATAAGACA+AGG + chr4.4:17921186-17921205 MS.gene34968:CDS 20.0%
!!! ATATCTTTAACTCATGTTTT+GGG + chr4.4:17922284-17922303 MS.gene34968:intron 20.0%
!!! ATGACACTTTTTGAATTATT+GGG + chr4.4:17921564-17921583 MS.gene34968:CDS 20.0%
!!! CAATAAAAAATGTGCTATTT+AGG - chr4.4:17922119-17922138 None:intergenic 20.0%
!!! CTAAATAGCACATTTTTTAT+TGG + chr4.4:17922117-17922136 MS.gene34968:intron 20.0%
!!! TTTTAATAACTCTCTTCTTA+GGG + chr4.4:17922183-17922202 MS.gene34968:intron 20.0%
! AAATTGATGCAATTATATGC+AGG + chr4.4:17921077-17921096 MS.gene34968:intron 25.0%
! ATCTTAGAATTGAAGAAACT+TGG + chr4.4:17921540-17921559 MS.gene34968:CDS 25.0%
! CTAAGAAGAGAGTTATTAAA+AGG - chr4.4:17922184-17922203 None:intergenic 25.0%
! CTTAGGGTTTCATTAAAAAA+TGG + chr4.4:17922199-17922218 MS.gene34968:intron 25.0%
! TGAACTCTAATTTATAAACC+TGG - chr4.4:17920859-17920878 None:intergenic 25.0%
! TGTAATAATGGCATTATTTG+TGG + chr4.4:17922077-17922096 MS.gene34968:intron 25.0%
!! ATGATGGAAATCAATCAATA+AGG + chr4.4:17921631-17921650 MS.gene34968:CDS 25.0%
!! ATTTTACAGATTCTAAGCAA+TGG + chr4.4:17922309-17922328 MS.gene34968:intron 25.0%
!! ATTTTTGTATGCATATGTGA+AGG + chr4.4:17921499-17921518 MS.gene34968:intron 25.0%
!! CATATCTTTAACTCATGTTT+TGG + chr4.4:17922283-17922302 MS.gene34968:intron 25.0%
!! CTTTTAATAACTCTCTTCTT+AGG + chr4.4:17922182-17922201 MS.gene34968:intron 25.0%
!! GATGCTTTTGTAGTTAATAT+TGG + chr4.4:17921810-17921829 MS.gene34968:CDS 25.0%
!! TTTTACAGATTCTAAGCAAT+GGG + chr4.4:17922310-17922329 MS.gene34968:intron 25.0%
!! TTTTTGTATGCATATGTGAA+GGG + chr4.4:17921500-17921519 MS.gene34968:intron 25.0%
!!! ATATTAACTACAAAAGCATC+TGG - chr4.4:17921810-17921829 None:intergenic 25.0%
!!! CATGACACTTTTTGAATTAT+TGG + chr4.4:17921563-17921582 MS.gene34968:CDS 25.0%
!!! TATTTTGTTTTCTCTTCAAC+AGG - chr4.4:17921174-17921193 None:intergenic 25.0%
AAGGTTTGAAAGTCAAAAAC+GGG - chr4.4:17920773-17920792 None:intergenic 30.0%
ACAGGAAGCTTGAAAAAATT+TGG - chr4.4:17921156-17921175 None:intergenic 30.0%
AGATTAAGAAAGATGGAGTT+TGG + chr4.4:17921766-17921785 MS.gene34968:CDS 30.0%
AGTGATTAATAAACCCGAAA+TGG + chr4.4:17920670-17920689 MS.gene34968:CDS 30.0%
AGTTAATATTGGAGACATCA+TGG + chr4.4:17921821-17921840 MS.gene34968:CDS 30.0%
CAAGGTTTGAAAGTCAAAAA+CGG - chr4.4:17920774-17920793 None:intergenic 30.0%
CATGTGTTATGGTGTAATAA+TGG + chr4.4:17922065-17922084 MS.gene34968:intron 30.0%
GAGTTATTAAAAGGAAGATG+AGG - chr4.4:17922175-17922194 None:intergenic 30.0%
GGTTTCAGTAAACAAAGAAA+AGG + chr4.4:17922356-17922375 MS.gene34968:CDS 30.0%
GTAGAGAATATGTTTGATGA+TGG + chr4.4:17921615-17921634 MS.gene34968:CDS 30.0%
GTGATTAATAAACCCGAAAT+GGG + chr4.4:17920671-17920690 MS.gene34968:CDS 30.0%
GTTTCATTTGATAGGATTGA+GGG - chr4.4:17920731-17920750 None:intergenic 30.0%
TCCAATTTCTGCTTCAAATT+TGG - chr4.4:17922412-17922431 None:intergenic 30.0%
TGAAGGTCAAAAACTTGATT+GGG + chr4.4:17921242-17921261 MS.gene34968:CDS 30.0%
TTATTACACCATAACACATG+TGG - chr4.4:17922065-17922084 None:intergenic 30.0%
TTCCTTCATATCCATCTTTA+TGG - chr4.4:17921595-17921614 None:intergenic 30.0%
TTTACAGATTCTAAGCAATG+GGG + chr4.4:17922311-17922330 MS.gene34968:intron 30.0%
! ACCAAATTTGAAGCAGAAAT+TGG + chr4.4:17922408-17922427 MS.gene34968:CDS 30.0%
! ATAAGACAAGGAGATTTTCA+AGG + chr4.4:17921198-17921217 MS.gene34968:CDS 30.0%
! ATCAACATGCTTTTGAACAA+AGG - chr4.4:17922468-17922487 None:intergenic 30.0%
! CTATTTAGGAGCATATTGAA+TGG - chr4.4:17922105-17922124 None:intergenic 30.0%
! TAGTATTTTCAATGAGTCGT+GGG + chr4.4:17921995-17922014 MS.gene34968:intron 30.0%
! TTTGTTCAAAAGCATGTTGA+TGG + chr4.4:17922467-17922486 MS.gene34968:CDS 30.0%
!! TCATTCAATTCTTGGTGTTA+TGG + chr4.4:17920643-17920662 MS.gene34968:CDS 30.0%
!! TTCTAAGATATATGACTCCA+AGG - chr4.4:17921529-17921548 None:intergenic 30.0%
!!! ATTTTTGGTATTCCCATTTC+GGG - chr4.4:17920686-17920705 None:intergenic 30.0%
!!! CATTTTTGGTATTCCCATTT+CGG - chr4.4:17920687-17920706 None:intergenic 30.0%
AAAAACGGGAATTGATTGCA+AGG - chr4.4:17920759-17920778 None:intergenic 35.0%
AAAACGGGAATTGATTGCAA+GGG - chr4.4:17920758-17920777 None:intergenic 35.0%
AATCAGCTTAATGGAGTTGA+AGG + chr4.4:17921738-17921757 MS.gene34968:CDS 35.0%
ACCATCCTTAATCAGCTTAA+TGG + chr4.4:17921729-17921748 MS.gene34968:CDS 35.0%
AGCCATAAAGATGGATATGA+AGG + chr4.4:17921590-17921609 MS.gene34968:CDS 35.0%
AGTATTGTCACCACATATCA+AGG - chr4.4:17920792-17920811 None:intergenic 35.0%
ATAAGCACCTTAGTGATGAT+GGG - chr4.4:17921332-17921351 None:intergenic 35.0%
ATAATAGGTATAGTAGGACC+TGG - chr4.4:17921932-17921951 None:intergenic 35.0%
ATTAAAAGGAAGATGAGGCA+TGG - chr4.4:17922170-17922189 None:intergenic 35.0%
ATTCTCAGCATGCAAAGATT+GGG + chr4.4:17920826-17920845 MS.gene34968:CDS 35.0%
ATTGGGAAAAGCCATAAAGA+TGG + chr4.4:17921581-17921600 MS.gene34968:CDS 35.0%
CAACTCCATTAAGCTGATTA+AGG - chr4.4:17921737-17921756 None:intergenic 35.0%
GAACTTATCAAACTCTTTGC+TGG - chr4.4:17922435-17922454 None:intergenic 35.0%
GAAGGTCAAAAACTTGATTG+GGG + chr4.4:17921243-17921262 MS.gene34968:CDS 35.0%
GACTTTCAAACCTTGATATG+TGG + chr4.4:17920779-17920798 MS.gene34968:CDS 35.0%
GGACTAGAGATTAAGAAAGA+TGG + chr4.4:17921759-17921778 MS.gene34968:CDS 35.0%
GGTTTCATTTGATAGGATTG+AGG - chr4.4:17920732-17920751 None:intergenic 35.0%
GTGAAGGTCAAAAACTTGAT+TGG + chr4.4:17921241-17921260 MS.gene34968:CDS 35.0%
TAATATTGGAGACATCATGG+AGG + chr4.4:17921824-17921843 MS.gene34968:CDS 35.0%
TATTCTCAGCATGCAAAGAT+TGG + chr4.4:17920825-17920844 MS.gene34968:CDS 35.0%
TCCATTAAGCTGATTAAGGA+TGG - chr4.4:17921733-17921752 None:intergenic 35.0%
TCTAAATGGGAAGACAAACT+TGG + chr4.4:17922521-17922540 MS.gene34968:CDS 35.0%
TGACAATGAAATAAAGCACG+TGG + chr4.4:17921897-17921916 MS.gene34968:intron 35.0%
TGCTAAATCCACATGTGTTA+TGG + chr4.4:17922054-17922073 MS.gene34968:intron 35.0%
TTAAAAGGAAGATGAGGCAT+GGG - chr4.4:17922169-17922188 None:intergenic 35.0%
TTGATGCAATTATATGCAGG+TGG + chr4.4:17921080-17921099 MS.gene34968:intron 35.0%
! AACATGCTTTTGAACAAAGG+TGG - chr4.4:17922465-17922484 None:intergenic 35.0%
! GTAGTATTTTCAATGAGTCG+TGG + chr4.4:17921994-17922013 MS.gene34968:intron 35.0%
!! AGGGATTGGTTTCATTTGAT+AGG - chr4.4:17920739-17920758 None:intergenic 35.0%
!! CAAGGAGATTTTCAAGGTTA+TGG + chr4.4:17921204-17921223 MS.gene34968:CDS 35.0%
!! TACAAAAGCATCTGGAAGAA+AGG - chr4.4:17921802-17921821 None:intergenic 35.0%
AGACAAACTTGGAGAGAATG+AGG + chr4.4:17922532-17922551 MS.gene34968:CDS 40.0%
AGGATTGAGGGTTCTTTATC+TGG - chr4.4:17920719-17920738 None:intergenic 40.0%
CTGATTAAGGATGGTTATGC+CGG - chr4.4:17921724-17921743 None:intergenic 40.0%
GATAAGCACCTTAGTGATGA+TGG - chr4.4:17921333-17921352 None:intergenic 40.0%
GGATTGAGGGTTCTTTATCT+GGG - chr4.4:17920718-17920737 None:intergenic 40.0%
TATATGCAGGTGGTGAATCA+CGG + chr4.4:17921090-17921109 MS.gene34968:intron 40.0%
TGTGGCTTTCTTCTTGCAAT+AGG - chr4.4:17921294-17921313 None:intergenic 40.0%
TTCTCAGCATGCAAAGATTG+GGG + chr4.4:17920827-17920846 MS.gene34968:CDS 40.0%
! TCTGGGCGAAGAAACATTTT+TGG - chr4.4:17920701-17920720 None:intergenic 40.0%
!! GAGAGCACTCATTCAATTCT+TGG + chr4.4:17920635-17920654 MS.gene34968:CDS 40.0%
CAAAGATTGGGGTTTCTTCC+AGG + chr4.4:17920838-17920857 MS.gene34968:CDS 45.0%
CTACTCTAGCATAGAGCACA+GGG + chr4.4:17922335-17922354 MS.gene34968:CDS 45.0%
CTCAACTCCCATCATCACTA+AGG + chr4.4:17921322-17921341 MS.gene34968:CDS 45.0%
GCATATGTGAAGGGATACCT+TGG + chr4.4:17921509-17921528 MS.gene34968:intron 45.0%
GGAGCTGTCATTAGATGTGA+AGG + chr4.4:17921225-17921244 MS.gene34968:CDS 45.0%
GGGAATTGATTGCAAGGGAT+TGG - chr4.4:17920753-17920772 None:intergenic 45.0%
GGGAGTTGAGGAAAAAGATG+TGG - chr4.4:17921312-17921331 None:intergenic 45.0%
TCTACTCTAGCATAGAGCAC+AGG + chr4.4:17922334-17922353 MS.gene34968:CDS 45.0%
!! CTTAGTGATGATGGGAGTTG+AGG - chr4.4:17921324-17921343 None:intergenic 45.0%
!! ATCAAATTAATTTATATAAT+AGG - chr4.4:17921947-17921966 None:intergenic 5.0%
AGCACGTGGTGTATTGAACC+AGG + chr4.4:17921911-17921930 MS.gene34968:intron 50.0%
GCATCTGGAAGAAAGGTCAC+AGG - chr4.4:17921795-17921814 None:intergenic 50.0%
GATGGTTATGCCGGAGCCGT+CGG - chr4.4:17921715-17921734 None:intergenic 60.0%
GGCATCAACCCTCACTCCGA+CGG + chr4.4:17921696-17921715 MS.gene34968:CDS 60.0%
TTGATGCCGTCGACGAGCTC+CGG - chr4.4:17921684-17921703 None:intergenic 60.0%
AACCCTCACTCCGACGGCTC+CGG + chr4.4:17921702-17921721 MS.gene34968:CDS 65.0%
CTATCCGCCATGCCCGCAAC+CGG + chr4.4:17921662-17921681 MS.gene34968:CDS 65.0%
ACGAGCTCCGGTTGCGGGCA+TGG - chr4.4:17921672-17921691 None:intergenic 70.0%
AGCTCCGGTTGCGGGCATGG+CGG - chr4.4:17921669-17921688 None:intergenic 70.0%
ATGCCGGAGCCGTCGGAGTG+AGG - chr4.4:17921708-17921727 None:intergenic 70.0%
CCGCAACCGGAGCTCGTCGA+CGG + chr4.4:17921675-17921694 MS.gene34968:CDS 70.0%
CCGTCGACGAGCTCCGGTTG+CGG - chr4.4:17921678-17921697 None:intergenic 70.0%
CGTCGACGAGCTCCGGTTGC+GGG - chr4.4:17921677-17921696 None:intergenic 70.0%
TGCCGGAGCCGTCGGAGTGA+GGG - chr4.4:17921707-17921726 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 17920605 17922560 17920605 ID=MS.gene34968
chr4.4 mRNA 17920605 17922560 17920605 ID=MS.gene34968.t1;Parent=MS.gene34968
chr4.4 exon 17920605 17920859 17920605 ID=MS.gene34968.t1.exon1;Parent=MS.gene34968.t1
chr4.4 CDS 17920605 17920859 17920605 ID=cds.MS.gene34968.t1;Parent=MS.gene34968.t1
chr4.4 exon 17921099 17921343 17921099 ID=MS.gene34968.t1.exon2;Parent=MS.gene34968.t1
chr4.4 CDS 17921099 17921343 17921099 ID=cds.MS.gene34968.t1;Parent=MS.gene34968.t1
chr4.4 exon 17921521 17921845 17921521 ID=MS.gene34968.t1.exon3;Parent=MS.gene34968.t1
chr4.4 CDS 17921521 17921845 17921521 ID=cds.MS.gene34968.t1;Parent=MS.gene34968.t1
chr4.4 exon 17922318 17922560 17922318 ID=MS.gene34968.t1.exon4;Parent=MS.gene34968.t1
chr4.4 CDS 17922318 17922560 17922318 ID=cds.MS.gene34968.t1;Parent=MS.gene34968.t1
Gene Sequence

>MS.gene34968

ATGGCATCATCTCAGGTGGCTAATATCTTTGAGAGCACTCATTCAATTCTTGGTGTTATGGATGAAGTGATTAATAAACCCGAAATGGGAATACCAAAAATGTTTCTTCGCCCAGATAAAGAACCCTCAATCCTATCAAATGAAACCAATCCCTTGCAATCAATTCCCGTTTTTGACTTTCAAACCTTGATATGTGGTGACAATACTGAACTTGACAAGTTATTCTCAGCATGCAAAGATTGGGGTTTCTTCCAGGTTTATAAATTAGAGTTCAATTCGTGTTCATCTATCGCGTAGAAAAAAATTTGTGCGCATCAAATCACATCTCAAAAAATAGATATTTGAATATATATCTTAAAAATTGGTGTAACATAGTGACACAATGATTGAATATATGTGTACAAATTAAGTTCTCTAGTTAAGTTATTGTTGTTTTTGCATTTTTTTTTTATGGTGTACAAAATCATTACTGAAATTGATGCAATTATATGCAGGTGGTGAATCACGGTATTAGCTCTGAATTGCTTGAGAAGCTGAAATTTGAGATTCCAAATTTTTTCAAGCTTCCTGTTGAAGAGAAAACAAAATACAAAATAAGACAAGGAGATTTTCAAGGTTATGGAGCTGTCATTAGATGTGAAGGTCAAAAACTTGATTGGGGTGACAGATTCTTCATGATTACAAATCCTATTGCAAGAAGAAAGCCACATCTTTTTCCTCAACTCCCATCATCACTAAGGTGCTTATCATAATTTCATGTTTCTAATCTATCTAAAATGTTAATATAGTTTTAGATACAAAATTGTTCCATATGTAATTTTTATTCAACTTTGTGATGTGACAACTTTGTGATTTAAACCTAATTAGATACTATATATTATATATATAAATCTCATTTTTGTATGCATATGTGAAGGGATACCTTGGAGTCATATATCTTAGAATTGAAGAAACTTGGCATGACACTTTTTGAATTATTGGGAAAAGCCATAAAGATGGATATGAAGGAAGTAGAGAATATGTTTGATGATGGAAATCAATCAATAAGGATGACATACTATCCGCCATGCCCGCAACCGGAGCTCGTCGACGGCATCAACCCTCACTCCGACGGCTCCGGCATAACCATCCTTAATCAGCTTAATGGAGTTGAAGGACTAGAGATTAAGAAAGATGGAGTTTGGATTCCTGTGACCTTTCTTCCAGATGCTTTTGTAGTTAATATTGGAGACATCATGGAGGTATGTCATTATTTTCTCTCATTTTCATACTTTTTTTTATTCTTCTTATTTTGACAATGAAATAAAGCACGTGGTGTATTGAACCAGGTCCTACTATACCTATTATATAAATTAATTTGATTCTTCGAATCAATTTATCAATATAAAAGTAGTATTTTCAATGAGTCGTGGGCGTTGTAATCATACCATTATTGTATCAAAAAGATAATGCTAAATCCACATGTGTTATGGTGTAATAATGGCATTATTTGTGGTGCCATTCAATATGCTCCTAAATAGCACATTTTTTATTGGAAACAGATTTTATTTGTCTACTACTACCCATGCCTCATCTTCCTTTTAATAACTCTCTTCTTAGGGTTTCATTAAAAAATGGAGTCTTAAACATGAACAAAAAAAAATCTACTACAAATTAAAACATGTCAAATAGTGTTTTTCATATCTTTAACTCATGTTTTGGGTGATTTTACAGATTCTAAGCAATGGGGTCTACTCTAGCATAGAGCACAGGGTTTCAGTAAACAAAGAAAAGGAGAGAGTTTCTGTTGCTATGTTCTTCAACACCAAATTTGAAGCAGAAATTGGACCAGCAAAGAGTTTGATAAGTTCTGAAAATCCACCTTTGTTCAAAAGCATGTTGATGGAAGAATACTCCAAATACTTTTTTTCAAGAAATCTAAATGGGAAGACAAACTTGGAGAGAATGAGGATTTAA
Protein sequence

>MS.gene34968.t1

MASSQVANIFESTHSILGVMDEVINKPEMGIPKMFLRPDKEPSILSNETNPLQSIPVFDFQTLICGDNTELDKLFSACKDWGFFQVVNHGISSELLEKLKFEIPNFFKLPVEEKTKYKIRQGDFQGYGAVIRCEGQKLDWGDRFFMITNPIARRKPHLFPQLPSSLRDTLESYILELKKLGMTLFELLGKAIKMDMKEVENMFDDGNQSIRMTYYPPCPQPELVDGINPHSDGSGITILNQLNGVEGLEIKKDGVWIPVTFLPDAFVVNIGDIMEILSNGVYSSIEHRVSVNKEKERVSVAMFFNTKFEAEIGPAKSLISSENPPLFKSMLMEEYSKYFFSRNLNGKTNLERMRI