Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35780.t1 | XP_003597042.1 | 80 | 260 | 32 | 2 | 1 | 240 | 1 | 260 | 1.20E-72 | 283.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35780.t1 | Q9FH37 | 63.8 | 177 | 55 | 4 | 73 | 240 | 58 | 234 | 4.0e-24 | 113.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35780.t1 | G7IKM3 | 80.0 | 260 | 32 | 2 | 1 | 240 | 1 | 260 | 8.6e-73 | 283.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene35780.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049265 | MS.gene35780 | 0.822409 | 2.41E-53 | -1.69E-46 |
| MS.gene049611 | MS.gene35780 | 0.814342 | 1.62E-51 | -1.69E-46 |
| MS.gene049634 | MS.gene35780 | 0.801232 | 9.92E-49 | -1.69E-46 |
| MS.gene050444 | MS.gene35780 | -0.814189 | 1.75E-51 | -1.69E-46 |
| MS.gene05079 | MS.gene35780 | 0.822653 | 2.11E-53 | -1.69E-46 |
| MS.gene050809 | MS.gene35780 | 0.87833 | 3.06E-69 | -1.69E-46 |
| MS.gene05104 | MS.gene35780 | 0.831118 | 2.00E-55 | -1.69E-46 |
| MS.gene051138 | MS.gene35780 | 0.81015 | 1.33E-50 | -1.69E-46 |
| MS.gene051632 | MS.gene35780 | 0.815712 | 8.03E-52 | -1.69E-46 |
| MS.gene051863 | MS.gene35780 | 0.821231 | 4.51E-53 | -1.69E-46 |
| MS.gene05240 | MS.gene35780 | 0.808149 | 3.57E-50 | -1.69E-46 |
| MS.gene05244 | MS.gene35780 | 0.801183 | 1.02E-48 | -1.69E-46 |
| MS.gene052702 | MS.gene35780 | 0.812742 | 3.64E-51 | -1.69E-46 |
| MS.gene052805 | MS.gene35780 | 0.81266 | 3.79E-51 | -1.69E-46 |
| MS.gene053420 | MS.gene35780 | 0.810195 | 1.30E-50 | -1.69E-46 |
| MS.gene053488 | MS.gene35780 | 0.826335 | 2.87E-54 | -1.69E-46 |
| MS.gene054290 | MS.gene35780 | 0.834681 | 2.60E-56 | -1.69E-46 |
| MS.gene054706 | MS.gene35780 | 0.819127 | 1.37E-52 | -1.69E-46 |
| MS.gene054707 | MS.gene35780 | 0.801475 | 8.85E-49 | -1.69E-46 |
| MS.gene054742 | MS.gene35780 | 0.812336 | 4.46E-51 | -1.69E-46 |
| MS.gene055154 | MS.gene35780 | 0.800864 | 1.18E-48 | -1.69E-46 |
| MS.gene056224 | MS.gene35780 | 0.802061 | 6.71E-49 | -1.69E-46 |
| MS.gene056590 | MS.gene35780 | 0.814516 | 1.48E-51 | -1.69E-46 |
| MS.gene056591 | MS.gene35780 | 0.814016 | 1.91E-51 | -1.69E-46 |
| MS.gene056688 | MS.gene35780 | 0.806785 | 6.95E-50 | -1.69E-46 |
| MS.gene056856 | MS.gene35780 | 0.865993 | 3.94E-65 | -1.69E-46 |
| MS.gene056920 | MS.gene35780 | 0.802915 | 4.47E-49 | -1.69E-46 |
| MS.gene057544 | MS.gene35780 | 0.829681 | 4.49E-55 | -1.69E-46 |
| MS.gene057549 | MS.gene35780 | 0.821031 | 5.01E-53 | -1.69E-46 |
| MS.gene057717 | MS.gene35780 | 0.813716 | 2.22E-51 | -1.69E-46 |
| MS.gene058067 | MS.gene35780 | 0.819852 | 9.34E-53 | -1.69E-46 |
| MS.gene058068 | MS.gene35780 | 0.801944 | 7.09E-49 | -1.69E-46 |
| MS.gene058093 | MS.gene35780 | 0.851482 | 8.62E-61 | -1.69E-46 |
| MS.gene058099 | MS.gene35780 | 0.827871 | 1.23E-54 | -1.69E-46 |
| MS.gene058158 | MS.gene35780 | 0.806101 | 9.69E-50 | -1.69E-46 |
| MS.gene058416 | MS.gene35780 | 0.8102 | 1.30E-50 | -1.69E-46 |
| MS.gene058603 | MS.gene35780 | 0.819266 | 1.27E-52 | -1.69E-46 |
| MS.gene058840 | MS.gene35780 | 0.80458 | 2.02E-49 | -1.69E-46 |
| MS.gene059037 | MS.gene35780 | 0.800619 | 1.32E-48 | -1.69E-46 |
| MS.gene059699 | MS.gene35780 | 0.808131 | 3.60E-50 | -1.69E-46 |
| MS.gene059703 | MS.gene35780 | 0.802018 | 6.85E-49 | -1.69E-46 |
| MS.gene060405 | MS.gene35780 | 0.814312 | 1.64E-51 | -1.69E-46 |
| MS.gene06074 | MS.gene35780 | 0.820287 | 7.43E-53 | -1.69E-46 |
| MS.gene061041 | MS.gene35780 | -0.815373 | 9.56E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35780.t1 | MTR_2g089000 | 91.154 | 260 | 3 | 2 | 1 | 240 | 1 | 260 | 1.95e-171 | 472 |
| MS.gene35780.t1 | MTR_4g081370 | 55.230 | 239 | 87 | 7 | 12 | 240 | 9 | 237 | 5.93e-78 | 235 |
| MS.gene35780.t1 | MTR_2g082640 | 54.167 | 240 | 81 | 8 | 12 | 240 | 9 | 230 | 1.08e-74 | 226 |
| MS.gene35780.t1 | MTR_4g081370 | 59.375 | 192 | 69 | 4 | 58 | 240 | 2 | 193 | 2.13e-70 | 214 |
| MS.gene35780.t1 | MTR_1g043430 | 49.412 | 170 | 84 | 2 | 73 | 240 | 77 | 246 | 3.97e-45 | 151 |
| MS.gene35780.t1 | MTR_4g075480 | 44.330 | 97 | 53 | 1 | 88 | 184 | 9 | 104 | 1.78e-18 | 82.4 |
| MS.gene35780.t1 | MTR_1g032600 | 44.565 | 92 | 50 | 1 | 90 | 181 | 82 | 172 | 1.95e-18 | 83.2 |
| MS.gene35780.t1 | MTR_4g075480 | 44.330 | 97 | 53 | 1 | 88 | 184 | 37 | 132 | 2.81e-18 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35780.t1 | AT5G54680 | 52.778 | 216 | 85 | 7 | 36 | 240 | 25 | 234 | 4.82e-66 | 204 |
| MS.gene35780.t1 | AT1G51070 | 54.922 | 193 | 79 | 5 | 56 | 240 | 34 | 226 | 1.62e-64 | 200 |
| MS.gene35780.t1 | AT1G51070 | 54.639 | 194 | 80 | 5 | 55 | 240 | 99 | 292 | 2.22e-63 | 199 |
| MS.gene35780.t1 | AT4G14410 | 50.888 | 169 | 71 | 5 | 78 | 240 | 115 | 277 | 4.99e-43 | 147 |
| MS.gene35780.t1 | AT4G14410 | 50.888 | 169 | 71 | 5 | 78 | 240 | 115 | 277 | 4.99e-43 | 147 |
| MS.gene35780.t1 | AT4G14410 | 50.888 | 169 | 71 | 5 | 78 | 240 | 121 | 283 | 6.76e-43 | 147 |
| MS.gene35780.t1 | AT3G23210 | 44.495 | 218 | 104 | 6 | 31 | 240 | 83 | 291 | 1.62e-40 | 140 |
| MS.gene35780.t1 | AT3G23210 | 44.495 | 218 | 104 | 6 | 31 | 240 | 112 | 320 | 2.37e-40 | 141 |
| MS.gene35780.t1 | AT3G19860 | 46.809 | 94 | 49 | 1 | 88 | 181 | 61 | 153 | 1.35e-17 | 80.9 |
| MS.gene35780.t1 | AT3G19860 | 45.918 | 98 | 52 | 1 | 84 | 181 | 4 | 100 | 1.37e-17 | 80.1 |
| MS.gene35780.t1 | AT3G19860 | 46.809 | 94 | 49 | 1 | 88 | 181 | 39 | 131 | 1.80e-17 | 80.1 |
| MS.gene35780.t1 | AT4G36060 | 44.792 | 96 | 52 | 1 | 86 | 181 | 27 | 121 | 4.36e-17 | 78.6 |
| MS.gene35780.t1 | AT4G36060 | 44.792 | 96 | 52 | 1 | 86 | 181 | 27 | 121 | 4.57e-17 | 78.6 |
| MS.gene35780.t1 | AT4G36060 | 44.792 | 96 | 52 | 1 | 86 | 181 | 45 | 139 | 9.88e-17 | 77.8 |
| MS.gene35780.t1 | AT4G36060 | 44.792 | 96 | 52 | 1 | 86 | 181 | 45 | 139 | 1.09e-16 | 77.8 |
Find 63 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACATGATTTAAAAGGTTTA+TGG | 0.124834 | 2.1:+13034859 | MS.gene35780:intron |
| TCTCAGCTTCATTTCTTAAT+TGG | 0.176160 | 2.1:-13034964 | None:intergenic |
| TAAGCTAACCTTGTCTGTTT+TGG | 0.191189 | 2.1:-13034915 | None:intergenic |
| TATTTCTGCTGCTGATTTCA+TGG | 0.212247 | 2.1:+13033577 | MS.gene35780:CDS |
| TCCATTTGGCTCTATGATTA+TGG | 0.214517 | 2.1:+13033539 | MS.gene35780:CDS |
| TTACAACAATATTATGGATA+TGG | 0.261534 | 2.1:+13033499 | None:intergenic |
| CCACTGGTGGTTCCTCCATT+TGG | 0.268940 | 2.1:+13033525 | MS.gene35780:CDS |
| CTCAGCTTCATTTCTTAATT+GGG | 0.281253 | 2.1:-13034963 | None:intergenic |
| CACTTTCTCACGACCTGCCT+TGG | 0.343619 | 2.1:-13034745 | None:intergenic |
| TTATATTTGCAGCATGGAAA+TGG | 0.352623 | 2.1:+13034326 | MS.gene35780:intron |
| TATTTCAAAGTCACCTCATA+TGG | 0.359098 | 2.1:-13033682 | None:intergenic |
| ATGCCTTTCATTGGTTATCC+TGG | 0.370469 | 2.1:+13035963 | MS.gene35780:CDS |
| TGCTAACCACTTTAAGCAAC+TGG | 0.372348 | 2.1:-13036053 | None:intergenic |
| CTGCTGCTCCTGCTTTCACC+TGG | 0.384655 | 2.1:+13033612 | MS.gene35780:CDS |
| CACAAGCTGATGCCTTTCAT+TGG | 0.397178 | 2.1:+13035954 | MS.gene35780:CDS |
| AACTGCCACATTGAGATTCC+AGG | 0.422338 | 2.1:-13035981 | None:intergenic |
| CTCACTGGATTCAACAGTAC+TGG | 0.435458 | 2.1:+13034353 | MS.gene35780:CDS |
| TCCTTTAGCAGCCATGGCAT+TGG | 0.447269 | 2.1:-13035919 | None:intergenic |
| ACCCTCCTTCCTCCCATATG+AGG | 0.459345 | 2.1:+13033669 | MS.gene35780:CDS |
| GAAGCTAGACAAAGAAAAGT+TGG | 0.461043 | 2.1:+13035854 | MS.gene35780:CDS |
| AAGTTATATTACCGCTTTGA+AGG | 0.475397 | 2.1:-13034384 | None:intergenic |
| AAGCAACTGGAGGTCGAAGC+AGG | 0.492222 | 2.1:-13036040 | None:intergenic |
| TCCAATGCCATGGCTGCTAA+AGG | 0.493863 | 2.1:+13035918 | MS.gene35780:CDS |
| TGAGGCATCCAGGTGAAAGC+AGG | 0.497970 | 2.1:-13033620 | None:intergenic |
| GAAGGGATAAATTGAATGAC+AGG | 0.502758 | 2.1:+13034769 | MS.gene35780:CDS |
| AGTTTGTCCTTTAGCAGCCA+TGG | 0.506775 | 2.1:-13035925 | None:intergenic |
| AGACTGAGGCTGAGGCATCC+AGG | 0.526908 | 2.1:-13033630 | None:intergenic |
| CATTGGAGAGGAAGTTAGAC+TGG | 0.527913 | 2.1:-13035902 | None:intergenic |
| GCCATAATCATAGAGCCAAA+TGG | 0.530360 | 2.1:-13033540 | None:intergenic |
| CATGGAAATGGAATACTCAC+TGG | 0.536132 | 2.1:+13034338 | MS.gene35780:CDS |
| AGTTATATTACCGCTTTGAA+GGG | 0.541196 | 2.1:-13034383 | None:intergenic |
| GATTCAACAGTACTGGAAAA+CGG | 0.545991 | 2.1:+13034360 | MS.gene35780:CDS |
| ATTTCAAAGTCACCTCATAT+GGG | 0.549756 | 2.1:-13033681 | None:intergenic |
| ACCTCATATGGGAGGAAGGA+GGG | 0.560123 | 2.1:-13033670 | None:intergenic |
| CGCTACAGTTGATACATCAC+AGG | 0.567747 | 2.1:+13036013 | MS.gene35780:CDS |
| TGAGTTTGAGACTGAGGCTG+AGG | 0.571581 | 2.1:-13033638 | None:intergenic |
| ATGGATATGGATTCCACTGG+TGG | 0.573000 | 2.1:+13033512 | MS.gene35780:CDS |
| TGTGATGTATCAACTGTAGC+GGG | 0.579736 | 2.1:-13036011 | None:intergenic |
| AAGCTGAGAGGCTCAAGGAA+AGG | 0.587154 | 2.1:+13034978 | MS.gene35780:CDS |
| TATGCATCTAGCTCCAAGGC+AGG | 0.594326 | 2.1:+13034732 | MS.gene35780:CDS |
| CAATGAAAGGCATCAGCTTG+TGG | 0.597079 | 2.1:-13035953 | None:intergenic |
| AGTCACCTCATATGGGAGGA+AGG | 0.599006 | 2.1:-13033674 | None:intergenic |
| GGTTAGCTTATTAAATGATG+CGG | 0.600148 | 2.1:+13034928 | MS.gene35780:CDS |
| ATTCCAGGATAACCAATGAA+AGG | 0.600579 | 2.1:-13035966 | None:intergenic |
| AAATGAAGCTGAGAGGCTCA+AGG | 0.603831 | 2.1:+13034973 | MS.gene35780:CDS |
| ATTAAATGATGCGGTTCGAG+TGG | 0.605944 | 2.1:+13034937 | MS.gene35780:CDS |
| CCAAATGGAGGAACCACCAG+TGG | 0.607270 | 2.1:-13033525 | None:intergenic |
| TAACTTCCTCTCCAATGCCA+TGG | 0.610860 | 2.1:+13035908 | MS.gene35780:CDS |
| ATTATGGATATGGATTCCAC+TGG | 0.611334 | 2.1:+13033509 | None:intergenic |
| ATCATATGCATCTAGCTCCA+AGG | 0.614949 | 2.1:+13034728 | MS.gene35780:CDS |
| CTGTGATGTATCAACTGTAG+CGG | 0.619711 | 2.1:-13036012 | None:intergenic |
| TAGCAGCCATGGCATTGGAG+AGG | 0.631338 | 2.1:-13035914 | None:intergenic |
| AGGTCGTGAGAAAGTGCGAA+GGG | 0.647351 | 2.1:+13034752 | MS.gene35780:CDS |
| ATGATATGAGTTTGAGACTG+AGG | 0.651321 | 2.1:-13033644 | None:intergenic |
| CACCTCATATGGGAGGAAGG+AGG | 0.652615 | 2.1:-13033671 | None:intergenic |
| CAGGTCGTGAGAAAGTGCGA+AGG | 0.654075 | 2.1:+13034751 | MS.gene35780:CDS |
| TCAAAGTCACCTCATATGGG+AGG | 0.655796 | 2.1:-13033678 | None:intergenic |
| TAACCACTTTAAGCAACTGG+AGG | 0.675285 | 2.1:-13036050 | None:intergenic |
| ATAATCATAGAGCCAAATGG+AGG | 0.683773 | 2.1:-13033537 | None:intergenic |
| TACGCTGCCCAAAACAGACA+AGG | 0.685974 | 2.1:+13034907 | MS.gene35780:CDS |
| TGGAAAACGGCCCTTCAAAG+CGG | 0.713168 | 2.1:+13034373 | MS.gene35780:CDS |
| AATTAAGAAATGAAGCTGAG+AGG | 0.714845 | 2.1:+13034966 | MS.gene35780:CDS |
| GTTATCCTGGAATCTCAATG+TGG | 0.748590 | 2.1:+13035976 | MS.gene35780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGTAAAAGATATTATATA+CGG | + | chr2.1:13034414-13034433 | MS.gene35780:intron | 10.0% |
| !!! | ATCTATCTTTTATATAAGAA+AGG | + | chr2.1:13035279-13035298 | MS.gene35780:intron | 15.0% |
| !!! | GTATATAATATCTTTTACAA+AGG | - | chr2.1:13034415-13034434 | None:intergenic | 15.0% |
| !!! | TTTTTCTTATCTTATTATAG+TGG | + | chr2.1:13035041-13035060 | MS.gene35780:intron | 15.0% |
| !! | AAGTAAACTTACTTATATGA+GGG | - | chr2.1:13035167-13035186 | None:intergenic | 20.0% |
| !! | AATGTTGAATGATAAATTTG+AGG | + | chr2.1:13034135-13034154 | MS.gene35780:intron | 20.0% |
| !! | ACAAGTCATTTCTTAAATTT+AGG | + | chr2.1:13035553-13035572 | MS.gene35780:intron | 20.0% |
| !! | TAAAAGATATTATATACGGT+TGG | + | chr2.1:13034418-13034437 | MS.gene35780:intron | 20.0% |
| !! | TTTCAATGACATGATTTAAA+AGG | + | chr2.1:13034852-13034871 | MS.gene35780:intron | 20.0% |
| !!! | ATTTAAGAAATGACTTGTTT+TGG | - | chr2.1:13035551-13035570 | None:intergenic | 20.0% |
| !!! | GATTTTGAATGAATTGATTT+TGG | + | chr2.1:13033765-13033784 | MS.gene35780:intron | 20.0% |
| ! | AAAACAACAATGAATAGAGA+GGG | - | chr2.1:13034660-13034679 | None:intergenic | 25.0% |
| ! | AATACTTTATATTTGCAGCT+TGG | + | chr2.1:13033974-13033993 | MS.gene35780:intron | 25.0% |
| ! | AATCAATTGTAGAAGCAAAA+CGG | + | chr2.1:13033853-13033872 | MS.gene35780:intron | 25.0% |
| ! | AGTAAACTTACTTATATGAG+GGG | - | chr2.1:13035166-13035185 | None:intergenic | 25.0% |
| ! | ATTACTTTATATTTGCAGCA+TGG | + | chr2.1:13034320-13034339 | MS.gene35780:intron | 25.0% |
| ! | CAAGTAAACTTACTTATATG+AGG | - | chr2.1:13035168-13035187 | None:intergenic | 25.0% |
| ! | CGAAAAAGTTAAAGAACTTA+AGG | + | chr2.1:13035015-13035034 | MS.gene35780:CDS | 25.0% |
| ! | GACATGATTTAAAAGGTTTA+TGG | + | chr2.1:13034859-13034878 | MS.gene35780:intron | 25.0% |
| ! | TAAAGTAAATCGACTGATAT+GGG | - | chr2.1:13035311-13035330 | None:intergenic | 25.0% |
| ! | TAAGATGATAACTAGTAGAT+AGG | - | chr2.1:13035211-13035230 | None:intergenic | 25.0% |
| ! | TAATATGCAACTGTAACTTT+AGG | + | chr2.1:13034694-13034713 | MS.gene35780:intron | 25.0% |
| ! | TGAGTTAAGCAATAAATTTG+AGG | + | chr2.1:13033825-13033844 | MS.gene35780:intron | 25.0% |
| !! | CTTCGAGTTAGAATTAATTA+TGG | + | chr2.1:13034195-13034214 | MS.gene35780:intron | 25.0% |
| AAAGTAAATCGACTGATATG+GGG | - | chr2.1:13035310-13035329 | None:intergenic | 30.0% | |
| AACACTTCTTGAATCAAGTT+TGG | + | chr2.1:13034234-13034253 | MS.gene35780:intron | 30.0% | |
| AAGTTATATTACCGCTTTGA+AGG | - | chr2.1:13034387-13034406 | None:intergenic | 30.0% | |
| AATTAAGAAATGAAGCTGAG+AGG | + | chr2.1:13034966-13034985 | MS.gene35780:CDS | 30.0% | |
| AGAAAGATGACCTATATACT+CGG | + | chr2.1:13034502-13034521 | MS.gene35780:intron | 30.0% | |
| ATATATCTCAAGGTTCACTT+CGG | - | chr2.1:13035377-13035396 | None:intergenic | 30.0% | |
| ATTTCAAAGTCACCTCATAT+GGG | - | chr2.1:13033684-13033703 | None:intergenic | 30.0% | |
| CGAGTTAGAATTAATTATGG+TGG | + | chr2.1:13034198-13034217 | MS.gene35780:intron | 30.0% | |
| CTCAGCTTCATTTCTTAATT+GGG | - | chr2.1:13034966-13034985 | None:intergenic | 30.0% | |
| GAAAACAACAATGAATAGAG+AGG | - | chr2.1:13034661-13034680 | None:intergenic | 30.0% | |
| GTAAAGTAAATCGACTGATA+TGG | - | chr2.1:13035312-13035331 | None:intergenic | 30.0% | |
| TATTTCAAAGTCACCTCATA+TGG | - | chr2.1:13033685-13033704 | None:intergenic | 30.0% | |
| TCGGATTATAACTAGTAGAT+GGG | - | chr2.1:13035358-13035377 | None:intergenic | 30.0% | |
| TCTCAGCTTCATTTCTTAAT+TGG | - | chr2.1:13034967-13034986 | None:intergenic | 30.0% | |
| TCTTTAAACACCGAGTATAT+AGG | - | chr2.1:13034515-13034534 | None:intergenic | 30.0% | |
| TGTAACAAAGACAGAGTAAA+AGG | - | chr2.1:13034634-13034653 | None:intergenic | 30.0% | |
| TTATATTTGCAGCATGGAAA+TGG | + | chr2.1:13034326-13034345 | MS.gene35780:intron | 30.0% | |
| TTATATTTGCAGCTTGGAAA+TGG | + | chr2.1:13033980-13033999 | MS.gene35780:intron | 30.0% | |
| TTCGGATTATAACTAGTAGA+TGG | - | chr2.1:13035359-13035378 | None:intergenic | 30.0% | |
| TTGTGATTAGTGGAAAACAA+GGG | - | chr2.1:13035685-13035704 | None:intergenic | 30.0% | |
| ! | AGATATATTACCGCTTTGAA+GGG | - | chr2.1:13034040-13034059 | None:intergenic | 30.0% |
| ! | AGTTATATTACCGCTTTGAA+GGG | - | chr2.1:13034386-13034405 | None:intergenic | 30.0% |
| !! | GGTTAGCTTATTAAATGATG+CGG | + | chr2.1:13034928-13034947 | MS.gene35780:CDS | 30.0% |
| AAGTAAATCGACTGATATGG+GGG | - | chr2.1:13035309-13035328 | None:intergenic | 35.0% | |
| ATAATCATAGAGCCAAATGG+AGG | - | chr2.1:13033540-13033559 | None:intergenic | 35.0% | |
| ATTCCAGGATAACCAATGAA+AGG | - | chr2.1:13035969-13035988 | None:intergenic | 35.0% | |
| CACGACAGACATATAATTAC+TGG | + | chr2.1:13035631-13035650 | MS.gene35780:intron | 35.0% | |
| CTTGTGATTAGTGGAAAACA+AGG | - | chr2.1:13035686-13035705 | None:intergenic | 35.0% | |
| GAAGCTAGACAAAGAAAAGT+TGG | + | chr2.1:13035854-13035873 | MS.gene35780:CDS | 35.0% | |
| GAAGGGATAAATTGAATGAC+AGG | + | chr2.1:13034769-13034788 | MS.gene35780:CDS | 35.0% | |
| GAAGTGAACCTTGAGATATA+TGG | + | chr2.1:13035376-13035395 | MS.gene35780:intron | 35.0% | |
| GAGATATATTACCGCTTTGA+AGG | - | chr2.1:13034041-13034060 | None:intergenic | 35.0% | |
| GTTGCTGGAAGTAAAAATGA+AGG | - | chr2.1:13035663-13035682 | None:intergenic | 35.0% | |
| TAGATAAAGATGTCGTCATG+TGG | - | chr2.1:13035121-13035140 | None:intergenic | 35.0% | |
| TCATCGTTTGATTGTTTGCA+CGG | + | chr2.1:13035433-13035452 | MS.gene35780:intron | 35.0% | |
| TCGATCACAAAGTGTATGTT+TGG | - | chr2.1:13034277-13034296 | None:intergenic | 35.0% | |
| TGAATCAAGTTTGGTTACTC+CGG | + | chr2.1:13034243-13034262 | MS.gene35780:intron | 35.0% | |
| TTCCATTACAGTTGAATCCA+GGG | - | chr2.1:13034012-13034031 | None:intergenic | 35.0% | |
| TTTCCATTACAGTTGAATCC+AGG | - | chr2.1:13034013-13034032 | None:intergenic | 35.0% | |
| ! | AAGACTAATGCTACTTCATG+CGG | + | chr2.1:13035588-13035607 | MS.gene35780:intron | 35.0% |
| ! | AAGCTAACCTTGTCTGTTTT+GGG | - | chr2.1:13034917-13034936 | None:intergenic | 35.0% |
| ! | ATGATATGAGTTTGAGACTG+AGG | - | chr2.1:13033647-13033666 | None:intergenic | 35.0% |
| ! | GATTCAACAGTACTGGAAAA+CGG | + | chr2.1:13034360-13034379 | MS.gene35780:CDS | 35.0% |
| ! | GCAACTGTAACTTTAGGTTA+AGG | + | chr2.1:13034700-13034719 | MS.gene35780:intron | 35.0% |
| ! | TAAGCTAACCTTGTCTGTTT+TGG | - | chr2.1:13034918-13034937 | None:intergenic | 35.0% |
| !! | TATTTCTGCTGCTGATTTCA+TGG | + | chr2.1:13033577-13033596 | MS.gene35780:CDS | 35.0% |
| !! | TCCATTTGGCTCTATGATTA+TGG | + | chr2.1:13033539-13033558 | MS.gene35780:CDS | 35.0% |
| !!! | GAAATGACTTGTTTTGGACT+TGG | - | chr2.1:13035545-13035564 | None:intergenic | 35.0% |
| ACCAAACACGCGCAAATTTA+AGG | - | chr2.1:13033737-13033756 | None:intergenic | 40.0% | |
| ATTAAATGATGCGGTTCGAG+TGG | + | chr2.1:13034937-13034956 | MS.gene35780:CDS | 40.0% | |
| CATGGAAATGGAATACTCAC+TGG | + | chr2.1:13034338-13034357 | MS.gene35780:CDS | 40.0% | |
| CCAAACACGCGCAAATTTAA+GGG | - | chr2.1:13033736-13033755 | None:intergenic | 40.0% | |
| CTGTGATGTATCAACTGTAG+CGG | - | chr2.1:13036015-13036034 | None:intergenic | 40.0% | |
| GCCATAATCATAGAGCCAAA+TGG | - | chr2.1:13033543-13033562 | None:intergenic | 40.0% | |
| GTGCTCAACCATATATCTCA+AGG | - | chr2.1:13035387-13035406 | None:intergenic | 40.0% | |
| GTTATCCTGGAATCTCAATG+TGG | + | chr2.1:13035976-13035995 | MS.gene35780:CDS | 40.0% | |
| TGGAAAGTAACCCTTCAAAG+CGG | + | chr2.1:13034027-13034046 | MS.gene35780:intron | 40.0% | |
| TGTGAACATGTTTCCTTTGC+AGG | + | chr2.1:13035794-13035813 | MS.gene35780:intron | 40.0% | |
| TGTGATGTATCAACTGTAGC+GGG | - | chr2.1:13036014-13036033 | None:intergenic | 40.0% | |
| ! | ATCATATGCATCTAGCTCCA+AGG | + | chr2.1:13034728-13034747 | MS.gene35780:CDS | 40.0% |
| ! | ATGCCTTTCATTGGTTATCC+TGG | + | chr2.1:13035963-13035982 | MS.gene35780:CDS | 40.0% |
| ! | GAGTAAAAGGCGCAAATTGA+AGG | - | chr2.1:13034621-13034640 | None:intergenic | 40.0% |
| ! | TGTATGTTTGGTTCCACTTC+CGG | - | chr2.1:13034265-13034284 | None:intergenic | 40.0% |
| AAATGAAGCTGAGAGGCTCA+AGG | + | chr2.1:13034973-13034992 | MS.gene35780:CDS | 45.0% | |
| AACTGCCACATTGAGATTCC+AGG | - | chr2.1:13035984-13036003 | None:intergenic | 45.0% | |
| AAGTTTGGTTACTCCGGAAG+TGG | + | chr2.1:13034249-13034268 | MS.gene35780:intron | 45.0% | |
| ACTTTACTTGCGCTTGTGCT+GGG | + | chr2.1:13035325-13035344 | MS.gene35780:intron | 45.0% | |
| AGTATCTATGTTGTGCCACG+TGG | + | chr2.1:13035246-13035265 | MS.gene35780:intron | 45.0% | |
| AGTTCATTCAGGACAGGTTC+GGG | + | chr2.1:13035717-13035736 | MS.gene35780:intron | 45.0% | |
| AGTTTGTCCTTTAGCAGCCA+TGG | - | chr2.1:13035928-13035947 | None:intergenic | 45.0% | |
| ATCCAACGCTCAGTTCATTC+AGG | + | chr2.1:13035706-13035725 | MS.gene35780:intron | 45.0% | |
| ATGGATATGGATTCCACTGG+TGG | + | chr2.1:13033512-13033531 | MS.gene35780:CDS | 45.0% | |
| CACAAGCTGATGCCTTTCAT+TGG | + | chr2.1:13035954-13035973 | MS.gene35780:CDS | 45.0% | |
| CAGTTCATTCAGGACAGGTT+CGG | + | chr2.1:13035716-13035735 | MS.gene35780:intron | 45.0% | |
| CATTGGAGAGGAAGTTAGAC+TGG | - | chr2.1:13035905-13035924 | None:intergenic | 45.0% | |
| CCCTTAAATTTGCGCGTGTT+TGG | + | chr2.1:13033733-13033752 | MS.gene35780:intron | 45.0% | |
| CTAGTTAAGAGATGGACCGT+GGG | + | chr2.1:13035513-13035532 | MS.gene35780:intron | 45.0% | |
| CTCACTGGATTCAACAGTAC+TGG | + | chr2.1:13034353-13034372 | MS.gene35780:CDS | 45.0% | |
| CTCCCTGGATTCAACTGTAA+TGG | + | chr2.1:13034007-13034026 | MS.gene35780:intron | 45.0% | |
| GCAGAGGTCTAGTTAAGAGA+TGG | + | chr2.1:13035505-13035524 | MS.gene35780:intron | 45.0% | |
| GCGTTGGATCTTGTGATTAG+TGG | - | chr2.1:13035695-13035714 | None:intergenic | 45.0% | |
| TAACTTCCTCTCCAATGCCA+TGG | + | chr2.1:13035908-13035927 | MS.gene35780:CDS | 45.0% | |
| TAAGTTTACTTGCACCTGCG+CGG | + | chr2.1:13035176-13035195 | MS.gene35780:intron | 45.0% | |
| TACTTTACTTGCGCTTGTGC+TGG | + | chr2.1:13035324-13035343 | MS.gene35780:intron | 45.0% | |
| TAGATAAAGACGTTGCCACG+TGG | - | chr2.1:13035264-13035283 | None:intergenic | 45.0% | |
| TAGTGGAAAACAAGGGTTGC+TGG | - | chr2.1:13035678-13035697 | None:intergenic | 45.0% | |
| TCAAAGTCACCTCATATGGG+AGG | - | chr2.1:13033681-13033700 | None:intergenic | 45.0% | |
| TCTAGTTAAGAGATGGACCG+TGG | + | chr2.1:13035512-13035531 | MS.gene35780:intron | 45.0% | |
| TCTTTCTTCTCAGCCTGCAA+AGG | - | chr2.1:13035810-13035829 | None:intergenic | 45.0% | |
| TGTCTGTCGTGAAACTTTCG+TGG | - | chr2.1:13035622-13035641 | None:intergenic | 45.0% | |
| ! | CGCTACAGTTGATACATCAC+AGG | + | chr2.1:13036013-13036032 | MS.gene35780:CDS | 45.0% |
| !! | AAGATGCTCTGGAGTGGATT+TGG | + | chr2.1:13035473-13035492 | MS.gene35780:intron | 45.0% |
| !! | AGATGCTCTGGAGTGGATTT+GGG | + | chr2.1:13035474-13035493 | MS.gene35780:intron | 45.0% |
| !! | CAATGAAAGGCATCAGCTTG+TGG | - | chr2.1:13035956-13035975 | None:intergenic | 45.0% |
| !! | CTTGGAAATGGATTACTCCC+TGG | + | chr2.1:13033992-13034011 | MS.gene35780:intron | 45.0% |
| AAGCTGAGAGGCTCAAGGAA+AGG | + | chr2.1:13034978-13034997 | MS.gene35780:CDS | 50.0% | |
| ACCTCATATGGGAGGAAGGA+GGG | - | chr2.1:13033673-13033692 | None:intergenic | 50.0% | |
| ACGCTCAGTTCATTCAGGAC+AGG | + | chr2.1:13035711-13035730 | MS.gene35780:intron | 50.0% | |
| AGTCACCTCATATGGGAGGA+AGG | - | chr2.1:13033677-13033696 | None:intergenic | 50.0% | |
| GCAGAGCTTCAAAGATGCTC+TGG | + | chr2.1:13035462-13035481 | MS.gene35780:intron | 50.0% | |
| GTCCTGAATGAACTGAGCGT+TGG | - | chr2.1:13035711-13035730 | None:intergenic | 50.0% | |
| TACGCTGCCCAAAACAGACA+AGG | + | chr2.1:13034907-13034926 | MS.gene35780:CDS | 50.0% | |
| TCCAATGCCATGGCTGCTAA+AGG | + | chr2.1:13035918-13035937 | MS.gene35780:CDS | 50.0% | |
| TCCTTTAGCAGCCATGGCAT+TGG | - | chr2.1:13035922-13035941 | None:intergenic | 50.0% | |
| TGGAAAACGGCCCTTCAAAG+CGG | + | chr2.1:13034373-13034392 | MS.gene35780:CDS | 50.0% | |
| ! | AGGTCGTGAGAAAGTGCGAA+GGG | + | chr2.1:13034752-13034771 | MS.gene35780:CDS | 50.0% |
| ! | TATGCATCTAGCTCCAAGGC+AGG | + | chr2.1:13034732-13034751 | MS.gene35780:CDS | 50.0% |
| ! | TGAGTTTGAGACTGAGGCTG+AGG | - | chr2.1:13033641-13033660 | None:intergenic | 50.0% |
| !! | GCTTCAAAGATGCTCTGGAG+TGG | + | chr2.1:13035467-13035486 | MS.gene35780:intron | 50.0% |
| !! | TCTGTTTTGGGCAGCGTATC+AGG | - | chr2.1:13034905-13034924 | None:intergenic | 50.0% |
| !!! | ACTTGTTTTGGACTTGGCCG+CGG | - | chr2.1:13035539-13035558 | None:intergenic | 50.0% |
| AAACGATGATCTGCACGCCG+TGG | - | chr2.1:13035422-13035441 | None:intergenic | 55.0% | |
| AAGCAACTGGAGGTCGAAGC+AGG | - | chr2.1:13036043-13036062 | None:intergenic | 55.0% | |
| ACCCTCCTTCCTCCCATATG+AGG | + | chr2.1:13033669-13033688 | MS.gene35780:CDS | 55.0% | |
| CACCTCATATGGGAGGAAGG+AGG | - | chr2.1:13033674-13033693 | None:intergenic | 55.0% | |
| CACTTTCTCACGACCTGCCT+TGG | - | chr2.1:13034748-13034767 | None:intergenic | 55.0% | |
| CCAAATGGAGGAACCACCAG+TGG | - | chr2.1:13033528-13033547 | None:intergenic | 55.0% | |
| CCACTGGTGGTTCCTCCATT+TGG | + | chr2.1:13033525-13033544 | MS.gene35780:CDS | 55.0% | |
| TGTCGTCATGTGGCACAACG+TGG | - | chr2.1:13035111-13035130 | None:intergenic | 55.0% | |
| ! | CAGGTCGTGAGAAAGTGCGA+AGG | + | chr2.1:13034751-13034770 | MS.gene35780:CDS | 55.0% |
| ! | CTGGAGTGGATTTGGGCTTG+TGG | + | chr2.1:13035481-13035500 | MS.gene35780:intron | 55.0% |
| ! | TAGCAGCCATGGCATTGGAG+AGG | - | chr2.1:13035917-13035936 | None:intergenic | 55.0% |
| ! | TGAGGCATCCAGGTGAAAGC+AGG | - | chr2.1:13033623-13033642 | None:intergenic | 55.0% |
| ACTTGCGCTTGTGCTGGGCA+TGG | + | chr2.1:13035330-13035349 | MS.gene35780:intron | 60.0% | |
| CTGCTGCTCCTGCTTTCACC+TGG | + | chr2.1:13033612-13033631 | MS.gene35780:CDS | 60.0% | |
| CTTGCGCTTGTGCTGGGCAT+GGG | + | chr2.1:13035331-13035350 | MS.gene35780:intron | 60.0% | |
| GATTTGGGCTTGTGGCGCAG+AGG | + | chr2.1:13035489-13035508 | MS.gene35780:intron | 60.0% | |
| ! | AGACTGAGGCTGAGGCATCC+AGG | - | chr2.1:13033633-13033652 | None:intergenic | 60.0% |
| AAGAGATGGACCGTGGGCCG+CGG | + | chr2.1:13035519-13035538 | MS.gene35780:intron | 65.0% | |
| AGCACGCGTAGACCTCGCCA+CGG | + | chr2.1:13035402-13035421 | MS.gene35780:intron | 65.0% | |
| ATAGGACCTATGCGCCGCGC+AGG | - | chr2.1:13035193-13035212 | None:intergenic | 65.0% | |
| ATGATCTGCACGCCGTGGCG+AGG | - | chr2.1:13035417-13035436 | None:intergenic | 65.0% | |
| CTTGCACCTGCGCGGCGCAT+AGG | + | chr2.1:13035184-13035203 | MS.gene35780:intron | 70.0% | |
| TTGGACTTGGCCGCGGCCCA+CGG | - | chr2.1:13035532-13035551 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 13033512 | 13036064 | 13033512 | ID=MS.gene35780 |
| chr2.1 | mRNA | 13033512 | 13036064 | 13033512 | ID=MS.gene35780.t1;Parent=MS.gene35780 |
| chr2.1 | exon | 13033512 | 13033690 | 13033512 | ID=MS.gene35780.t1.exon1;Parent=MS.gene35780.t1 |
| chr2.1 | CDS | 13033512 | 13033690 | 13033512 | ID=cds.MS.gene35780.t1;Parent=MS.gene35780.t1 |
| chr2.1 | exon | 13034338 | 13034394 | 13034338 | ID=MS.gene35780.t1.exon2;Parent=MS.gene35780.t1 |
| chr2.1 | CDS | 13034338 | 13034394 | 13034338 | ID=cds.MS.gene35780.t1;Parent=MS.gene35780.t1 |
| chr2.1 | exon | 13034716 | 13034790 | 13034716 | ID=MS.gene35780.t1.exon3;Parent=MS.gene35780.t1 |
| chr2.1 | CDS | 13034716 | 13034790 | 13034716 | ID=cds.MS.gene35780.t1;Parent=MS.gene35780.t1 |
| chr2.1 | exon | 13034874 | 13035036 | 13034874 | ID=MS.gene35780.t1.exon4;Parent=MS.gene35780.t1 |
| chr2.1 | CDS | 13034874 | 13035036 | 13034874 | ID=cds.MS.gene35780.t1;Parent=MS.gene35780.t1 |
| chr2.1 | exon | 13035816 | 13036064 | 13035816 | ID=MS.gene35780.t1.exon5;Parent=MS.gene35780.t1 |
| chr2.1 | CDS | 13035816 | 13036064 | 13035816 | ID=cds.MS.gene35780.t1;Parent=MS.gene35780.t1 |
| Gene Sequence |
| Protein sequence |
