AlfalfaGEDB | MS.gene35938

M. sativa cultivar XinJiangDaYe / MS.gene35938

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF04770.15

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35938.t1	XP_013445699.1	93.7	396	17	3	1	393	1	391	2.20E-92	349.4

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35938.t1	Q6ER21	57.1	268	74	2	67	334	41	267	3.4e-25	117.5

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35938.t1	A0A072U1Q4	93.7	396	17	3	1	393	1	391	1.6e-92	349.4

TFs/TRs:

Gene ID	Type	Classification
MS.gene35938.t1	TF	zf-HD

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049614	MS.gene35938	0.836443	9.33E-57	-1.69E-46
MS.gene050076	MS.gene35938	0.806285	8.86E-50	-1.69E-46
MS.gene050163	MS.gene35938	0.807396	5.16E-50	-1.69E-46
MS.gene050581	MS.gene35938	0.83629	1.02E-56	-1.69E-46
MS.gene050767	MS.gene35938	0.874642	5.76E-68	-1.69E-46
MS.gene050770	MS.gene35938	0.873318	1.61E-67	-1.69E-46
MS.gene05100	MS.gene35938	0.806549	7.79E-50	-1.69E-46
MS.gene05101	MS.gene35938	0.825066	5.74E-54	-1.69E-46
MS.gene051228	MS.gene35938	0.809854	1.54E-50	-1.69E-46
MS.gene052271	MS.gene35938	0.828117	1.07E-54	-1.69E-46
MS.gene052290	MS.gene35938	0.871486	6.59E-67	-1.69E-46
MS.gene052326	MS.gene35938	0.833251	5.94E-56	-1.69E-46
MS.gene052379	MS.gene35938	0.816983	4.17E-52	-1.69E-46
MS.gene053009	MS.gene35938	0.8276	1.43E-54	-1.69E-46
MS.gene053322	MS.gene35938	0.833024	6.76E-56	-1.69E-46
MS.gene054376	MS.gene35938	0.867014	1.87E-65	-1.69E-46
MS.gene054802	MS.gene35938	0.853257	2.69E-61	-1.69E-46
MS.gene054803	MS.gene35938	0.855275	7.04E-62	-1.69E-46
MS.gene054804	MS.gene35938	0.855837	4.83E-62	-1.69E-46
MS.gene055254	MS.gene35938	0.87596	2.04E-68	-1.69E-46
MS.gene055397	MS.gene35938	0.845069	5.11E-59	-1.69E-46
MS.gene055497	MS.gene35938	-0.823942	1.06E-53	-1.69E-46
MS.gene055499	MS.gene35938	0.85307	3.05E-61	-1.69E-46
MS.gene05592	MS.gene35938	0.804475	2.12E-49	-1.69E-46
MS.gene057129	MS.gene35938	0.850819	1.33E-60	-1.69E-46
MS.gene057295	MS.gene35938	0.820295	7.40E-53	-1.69E-46
MS.gene058323	MS.gene35938	0.80223	6.19E-49	-1.69E-46
MS.gene058903	MS.gene35938	0.833057	6.63E-56	-1.69E-46
MS.gene059960	MS.gene35938	0.816572	5.16E-52	-1.69E-46
MS.gene060005	MS.gene35938	0.812699	3.72E-51	-1.69E-46
MS.gene061200	MS.gene35938	0.842282	2.84E-58	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35938.t1	MTR_8g467340	92.424	396	22	3	1	393	1	391	1.63e-179	504
MS.gene35938.t1	MTR_7g010300	40.841	333	114	10	65	393	86	339	1.14e-58	194
MS.gene35938.t1	MTR_6g012280	72.131	61	17	0	66	126	90	150	1.33e-24	103
MS.gene35938.t1	MTR_6g073013	62.903	62	22	1	274	334	101	162	7.65e-23	95.1
MS.gene35938.t1	MTR_6g073013	53.521	71	27	2	67	137	19	83	2.32e-17	79.7
MS.gene35938.t1	MTR_4g134580	57.353	68	29	0	274	341	284	351	2.30e-22	97.8
MS.gene35938.t1	MTR_4g134580	62.963	54	18	1	67	120	113	164	5.54e-16	79.0
MS.gene35938.t1	MTR_1g077020	60.317	63	25	0	274	336	124	186	1.25e-21	92.0
MS.gene35938.t1	MTR_1g077020	64.407	59	17	2	63	120	5	60	1.05e-20	89.4
MS.gene35938.t1	MTR_5g032600	63.492	63	23	0	274	336	209	271	2.48e-21	93.2
MS.gene35938.t1	MTR_5g032600	46.154	104	51	3	67	168	78	178	2.25e-19	87.4
MS.gene35938.t1	MTR_5g020510	56.250	64	28	0	274	337	233	296	4.59e-20	90.1
MS.gene35938.t1	MTR_5g020510	51.899	79	29	2	52	123	84	160	1.21e-19	89.0
MS.gene35938.t1	MTR_3g100650	53.968	63	29	0	274	336	211	273	2.47e-19	87.4
MS.gene35938.t1	MTR_3g100650	59.259	54	20	1	65	118	78	129	4.29e-15	75.5
MS.gene35938.t1	MTR_8g051480	46.341	82	43	1	255	336	48	128	2.08e-18	81.3
MS.gene35938.t1	MTR_8g069080	43.011	93	52	1	240	332	172	263	2.36e-18	84.7
MS.gene35938.t1	MTR_8g069080	59.322	59	22	1	60	118	62	118	9.54e-17	80.1
MS.gene35938.t1	MTR_2g076780	52.381	63	30	0	270	332	170	232	3.63e-18	83.6
MS.gene35938.t1	MTR_2g076780	50.000	76	36	1	43	118	13	86	8.42e-17	79.7
MS.gene35938.t1	MTR_6g012220	62.963	54	14	1	64	117	18	65	7.42e-17	75.5
MS.gene35938.t1	MTR_8g069380	45.205	73	40	0	264	336	42	114	3.16e-16	74.7
MS.gene35938.t1	MTR_3g039810	56.667	60	24	1	65	124	18	75	3.35e-16	73.6
MS.gene35938.t1	MTR_5g065440	55.556	54	22	1	65	118	56	107	1.45e-13	70.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35938.t1	AT3G28920	38.315	368	129	10	1	367	7	277	2.01e-52	177
MS.gene35938.t1	AT1G69600	38.929	280	85	8	60	337	24	219	1.41e-50	170
MS.gene35938.t1	AT5G15210	81.818	55	10	0	64	118	53	107	1.83e-26	107
MS.gene35938.t1	AT5G15210	64.407	59	21	0	274	332	179	237	6.65e-22	94.7
MS.gene35938.t1	AT5G60480	69.355	62	19	0	60	121	30	91	4.88e-24	99.4
MS.gene35938.t1	AT5G60480	52.459	61	29	0	270	330	143	203	9.03e-17	79.3
MS.gene35938.t1	AT1G75240	61.905	63	24	0	271	333	237	299	2.83e-22	96.7
MS.gene35938.t1	AT1G75240	64.815	54	17	1	65	118	74	125	6.82e-17	81.3
MS.gene35938.t1	AT5G39760	77.193	57	13	0	63	119	52	108	5.71e-22	96.3
MS.gene35938.t1	AT4G24660	54.430	79	34	1	260	336	141	219	1.21e-21	92.8
MS.gene35938.t1	AT4G24660	62.500	56	19	1	65	120	47	100	1.63e-18	84.0
MS.gene35938.t1	AT1G14440	66.667	57	19	0	274	330	218	274	1.48e-21	94.7
MS.gene35938.t1	AT1G14440	54.545	66	28	1	64	129	87	150	8.94e-18	84.0
MS.gene35938.t1	AT1G14440	66.667	57	19	0	274	330	218	274	1.48e-21	94.7
MS.gene35938.t1	AT1G14440	54.545	66	28	1	64	129	87	150	8.94e-18	84.0
MS.gene35938.t1	AT4G24660	56.000	75	31	1	260	332	141	215	1.81e-21	92.8
MS.gene35938.t1	AT4G24660	62.500	56	19	1	65	120	47	100	1.33e-18	84.7
MS.gene35938.t1	AT2G02540	58.462	65	26	1	274	338	222	285	5.30e-21	92.8
MS.gene35938.t1	AT2G02540	60.345	58	21	1	63	120	83	138	6.61e-19	87.0
MS.gene35938.t1	AT2G02540	58.462	65	26	1	274	338	222	285	5.30e-21	92.8
MS.gene35938.t1	AT2G02540	60.345	58	21	1	63	120	83	138	6.61e-19	87.0
MS.gene35938.t1	AT2G18350	60.317	63	25	0	274	336	198	260	9.83e-21	91.3
MS.gene35938.t1	AT2G18350	65.385	52	16	1	67	118	82	131	3.39e-15	75.5
MS.gene35938.t1	AT5G65410	52.542	59	28	0	274	332	191	249	1.52e-18	85.5
MS.gene35938.t1	AT5G65410	62.963	54	18	1	65	118	73	124	1.83e-17	82.4
MS.gene35938.t1	AT1G74660	61.111	54	19	1	65	118	37	88	3.45e-17	76.6
MS.gene35938.t1	AT1G74660	61.111	54	19	1	65	118	37	88	5.81e-17	76.3
MS.gene35938.t1	AT3G50890	56.140	57	25	0	279	335	186	242	1.27e-16	79.3
MS.gene35938.t1	AT3G50890	50.000	70	26	2	65	127	58	125	2.77e-14	72.4
MS.gene35938.t1	AT3G28917	52.308	65	30	1	65	129	31	94	4.64e-16	73.9
MS.gene35938.t1	AT1G18835	61.111	54	16	1	65	118	24	72	7.52e-16	72.8
MS.gene35938.t1	AT5G42780	48.889	90	38	3	33	118	26	111	4.23e-14	72.0
MS.gene35938.t1	AT5G42780	45.000	60	33	0	275	334	180	239	3.11e-12	66.6
MS.gene35938.t1	AT1G14687	50.980	51	18	1	67	117	7	50	1.62e-12	65.9

Find 104 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GATGAAGACTTTAAGGTTAT+TGG	0.142282	8.2:+41933471	None:intergenic
TGTGAAAGATGAAGACTTTA+AGG	0.146671	8.2:+41933464	None:intergenic
GGGCTTGTGCTTTGACTAAT+TGG	0.181458	8.2:+41933021	None:intergenic
GTTCATGTTTCCTCTGTTAA+TGG	0.195476	8.2:-41932388	MS.gene35938:CDS
TGGTGGTGGTGGAGTGGTGG+TGG	0.291314	8.2:+41933404	None:intergenic
TGGTGGTGGAGTGGTGGTGG+TGG	0.315193	8.2:+41933407	None:intergenic
GGTGATGATGGGCTTGAAAT+TGG	0.322434	8.2:+41932964	None:intergenic
TGGTGGAGTGGTGGTGGTGG+TGG	0.335251	8.2:+41933410	None:intergenic
TTAAAGACTAATTAATTAAG+AGG	0.352931	8.2:+41932360	None:intergenic
CTTGGGCTTGTACTTTGACT+TGG	0.355993	8.2:+41933000	None:intergenic
ATTGGTGTTGTGGTAATGTT+TGG	0.361077	8.2:+41933489	None:intergenic
TCAGAATCTGATGTTGGAAT+TGG	0.361684	8.2:-41932523	MS.gene35938:CDS
GCAGCACATTTGAGGGATCT+TGG	0.362520	8.2:+41933237	None:intergenic
TTTGAGGGATCTTGGGTCAT+TGG	0.365376	8.2:+41933245	None:intergenic
GCTCACGGCGGTGGAAATTC+CGG	0.372619	8.2:+41933202	None:intergenic
TTGAGGGATCTTGGGTCATT+GGG	0.378829	8.2:+41933246	None:intergenic
TTGGGCTTGTACTTTGACTT+GGG	0.420438	8.2:+41933001	None:intergenic
GAGAGTGGTGGTGGTGATGA+TGG	0.424010	8.2:+41932952	None:intergenic
TGCTGTAGCGGTGGTGGTGG+TGG	0.424860	8.2:+41933390	None:intergenic
GCTCTTGTGGCTCACGGCGG+TGG	0.424923	8.2:+41933193	None:intergenic
GGTGGTGGTGGTTGTGGTGG+TGG	0.428852	8.2:+41933066	None:intergenic
CACGACCTCGACCACCACTA+TGG	0.431174	8.2:-41933157	MS.gene35938:CDS
CAGCACATTTGAGGGATCTT+GGG	0.434610	8.2:+41933238	None:intergenic
CTAGGTGGACATGCACTTGA+TGG	0.436606	8.2:-41933303	MS.gene35938:CDS
GGTAACGGTGGTGGTGGTTG+TGG	0.441537	8.2:+41933060	None:intergenic
GATGGGCTTGAAATTGGACT+TGG	0.452481	8.2:+41932970	None:intergenic
AATTGAGATTCCTTTGAAGA+TGG	0.453296	8.2:+41932806	None:intergenic
TTGGACTTGGGCTATGACTT+GGG	0.456233	8.2:+41932983	None:intergenic
GCAAAAGAGTGATGATGGTT+TGG	0.463952	8.2:-41932635	MS.gene35938:CDS
AAGTCTTCATCTTTCACAAA+CGG	0.466316	8.2:-41933459	MS.gene35938:CDS
ATTGGACTTGGGCTATGACT+TGG	0.471642	8.2:+41932982	None:intergenic
GGTGGTGGAACTGTTGTTGA+AGG	0.472822	8.2:+41933081	None:intergenic
TGTGGCAGTGGTAACGGTGG+TGG	0.478308	8.2:+41933051	None:intergenic
GCTGAAGAGTGATGATAAGA+AGG	0.480903	8.2:+41932919	None:intergenic
CTTTAAGGTTATTGGTGTTG+TGG	0.483964	8.2:+41933479	None:intergenic
AACGGTGGTGGTGGTTGTGG+TGG	0.489441	8.2:+41933063	None:intergenic
CAGAAATTCTGCAATGACAT+TGG	0.496065	8.2:-41932610	MS.gene35938:CDS
GGCGCTGACTGTTGCCATAG+TGG	0.500941	8.2:+41933143	None:intergenic
AGAGTGGTGGTGGTGATGAT+GGG	0.502065	8.2:+41932953	None:intergenic
GGTTGTTGCTGTAGCGGTGG+TGG	0.503558	8.2:+41933384	None:intergenic
TGGTGGTGGTTGTTGTGAGT+TGG	0.503692	8.2:+41933424	None:intergenic
TGTAGCGGTGGTGGTGGTGG+TGG	0.504525	8.2:+41933393	None:intergenic
GTGCTGCTTGTGGCTGCCAC+CGG	0.504609	8.2:-41933221	MS.gene35938:CDS
CCACGGTGTGGCAGTGGTAA+CGG	0.506423	8.2:+41933045	None:intergenic
GGCAGTGGTAACGGTGGTGG+TGG	0.512134	8.2:+41933054	None:intergenic
CATATGATGAATGACATTGT+TGG	0.516395	8.2:+41932432	None:intergenic
AATGATGAAAAGAACAATGC+TGG	0.516797	8.2:-41932475	MS.gene35938:CDS
AGCCACAAGCAGCACATTTG+AGG	0.516876	8.2:+41933229	None:intergenic
ATTCATCATATGAATGAAGA+TGG	0.518033	8.2:-41932421	MS.gene35938:CDS
AAGAAATCAGAATCTGATGT+TGG	0.519643	8.2:-41932529	MS.gene35938:CDS
TGTTGCTGTAGCGGTGGTGG+TGG	0.525490	8.2:+41933387	None:intergenic
TGTGACTGTTGTTGTTGTTG+TGG	0.526058	8.2:+41932755	None:intergenic
GCCACAAGCAGCACATTTGA+GGG	0.526518	8.2:+41933230	None:intergenic
AAAATGCAAAAGAGTGATGA+TGG	0.531947	8.2:-41932640	MS.gene35938:CDS
TCATTGGGATTGAGAGATGA+TGG	0.533214	8.2:+41933261	None:intergenic
GTGTAGATACAGCTAAGAAA+AGG	0.535424	8.2:+41933108	None:intergenic
GAAAAGAACAATGCTGGTAA+TGG	0.536666	8.2:-41932469	MS.gene35938:CDS
CATAGTGGTGGTCGAGGTCG+TGG	0.548403	8.2:+41933158	None:intergenic
ATTGGACCACGGTGTGGCAG+TGG	0.548846	8.2:+41933039	None:intergenic
CATCAAGTGCATGTCCACCT+AGG	0.550202	8.2:+41933304	None:intergenic
ACCATCAAAACCATCTTCAA+AGG	0.550321	8.2:-41932816	MS.gene35938:CDS
GGATGTGCTCTTGTGGCTCA+CGG	0.553701	8.2:+41933187	None:intergenic
ATCAAGTGCATGTCCACCTA+GGG	0.558096	8.2:+41933305	None:intergenic
AGTCACAACAACACAAGTAG+TGG	0.568991	8.2:-41932739	MS.gene35938:CDS
GAAACAACCATGGAGGATGA+TGG	0.573167	8.2:+41933360	None:intergenic
TCCCTCAAATGTGCTGCTTG+TGG	0.575497	8.2:-41933231	MS.gene35938:CDS
TAGATACAGCTAAGAAAAGG+TGG	0.577392	8.2:+41933111	None:intergenic
TGGTCGAGGTCGTGGTGGTG+AGG	0.578177	8.2:+41933166	None:intergenic
TTCATCATATGAATGAAGAT+GGG	0.583881	8.2:-41932420	MS.gene35938:CDS
GGTAAATGTGAGAGTGGTGG+TGG	0.585939	8.2:+41932943	None:intergenic
TGCTTTGACTAATTGGACCA+CGG	0.587225	8.2:+41933028	None:intergenic
GCTGGTAATGGTAATGATGA+TGG	0.592623	8.2:-41932457	MS.gene35938:CDS
GAAGAGTGATGATAAGAAGG+TGG	0.597173	8.2:+41932922	None:intergenic
ATGGGCTTGAAATTGGACTT+GGG	0.599703	8.2:+41932971	None:intergenic
GATGGTGGTTGTTGCTGTAG+CGG	0.603763	8.2:+41933378	None:intergenic
AATGACATTGGTGTTTCTAG+AGG	0.607705	8.2:-41932598	MS.gene35938:CDS
CCAAGAGCTAAAAGCATGTG+AGG	0.612524	8.2:+41932895	None:intergenic
TGTTGCCATAGTGGTGGTCG+AGG	0.618663	8.2:+41933152	None:intergenic
GTCACAACAACACAAGTAGT+GGG	0.621932	8.2:-41932738	MS.gene35938:CDS
GAAGGTGGTAAATGTGAGAG+TGG	0.625404	8.2:+41932937	None:intergenic
GGACATGCACTTGATGGATG+TGG	0.627027	8.2:-41933297	MS.gene35938:CDS
GAGCAGAAAGAGAAGATGCA+TGG	0.627308	8.2:-41932685	MS.gene35938:CDS
TGATCATGATCAGAGTGTTG+TGG	0.633373	8.2:+41932850	None:intergenic
CACGGCGGTGGAAATTCCGG+TGG	0.637479	8.2:+41933205	None:intergenic
ACAACCACCATCATCCTCCA+TGG	0.637561	8.2:-41933367	MS.gene35938:CDS
GTGGTGAGGATGTGCTCTTG+TGG	0.640303	8.2:+41933180	None:intergenic
ACAACAAGAATAGTAGCTTG+AGG	0.648719	8.2:-41932552	MS.gene35938:CDS
TGACTAATTGGACCACGGTG+TGG	0.656646	8.2:+41933033	None:intergenic
AGATACAGCTAAGAAAAGGT+GGG	0.662974	8.2:+41933112	None:intergenic
TCATGATCAGAGTGTTGTGG+TGG	0.665411	8.2:+41932853	None:intergenic
GGTGGTTGTTGCTGTAGCGG+TGG	0.668364	8.2:+41933381	None:intergenic
TTCTTTGTAAGAAACAACCA+TGG	0.679590	8.2:+41933350	None:intergenic
AGAGGATAAACCATTAACAG+AGG	0.679925	8.2:+41932378	None:intergenic
GCTGACTGTTGCCATAGTGG+TGG	0.680669	8.2:+41933146	None:intergenic
AGTGGTGGTCGAGGTCGTGG+TGG	0.691106	8.2:+41933161	None:intergenic
GGTGGTAAATGTGAGAGTGG+TGG	0.697780	8.2:+41932940	None:intergenic
AATCATGCTGCATCCCTAGG+TGG	0.699222	8.2:-41933318	MS.gene35938:CDS
TTTGTAAGAAACAACCATGG+AGG	0.701159	8.2:+41933353	None:intergenic
CGGTGTGGCAGTGGTAACGG+TGG	0.702008	8.2:+41933048	None:intergenic
ATACAGGACAAAATTCAGCA+AGG	0.705667	8.2:-41932707	MS.gene35938:CDS
TGTGCTCTTGTGGCTCACGG+CGG	0.720758	8.2:+41933190	None:intergenic
ACAACCATGGAGGATGATGG+TGG	0.729586	8.2:+41933363	None:intergenic
CCGTTACCACTGCCACACCG+TGG	0.734370	8.2:-41933045	MS.gene35938:CDS
TTGGGATTGAGAGATGATGG+TGG	0.770102	8.2:+41933264	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	ATTCATCATATGAATGAAGA+TGG	-	chr8.2:41933488-41933507	MS.gene35938:CDS	25.0%
!	TTCATCATATGAATGAAGAT+GGG	-	chr8.2:41933489-41933508	MS.gene35938:CDS	25.0%
	AAAATGCAAAAGAGTGATGA+TGG	-	chr8.2:41933269-41933288	MS.gene35938:CDS	30.0%
	AAGAAATCAGAATCTGATGT+TGG	-	chr8.2:41933380-41933399	MS.gene35938:CDS	30.0%
	AAGTCTTCATCTTTCACAAA+CGG	-	chr8.2:41932450-41932469	MS.gene35938:CDS	30.0%
	AATGATGAAAAGAACAATGC+TGG	-	chr8.2:41933434-41933453	MS.gene35938:CDS	30.0%
	CATATGATGAATGACATTGT+TGG	+	chr8.2:41933480-41933499	None:intergenic	30.0%
	TGTGAAAGATGAAGACTTTA+AGG	+	chr8.2:41932448-41932467	None:intergenic	30.0%
	TTCTTTGTAAGAAACAACCA+TGG	+	chr8.2:41932562-41932581	None:intergenic	30.0%
!	AATTGAGATTCCTTTGAAGA+TGG	+	chr8.2:41933106-41933125	None:intergenic	30.0%
!!	CATGGTTTTTCTGAGAAATT+GGG	-	chr8.2:41933242-41933261	MS.gene35938:CDS	30.0%
!!	GATGAAGACTTTAAGGTTAT+TGG	+	chr8.2:41932441-41932460	None:intergenic	30.0%
	ACAACAAGAATAGTAGCTTG+AGG	-	chr8.2:41933357-41933376	MS.gene35938:CDS	35.0%
	ACCATCAAAACCATCTTCAA+AGG	-	chr8.2:41933093-41933112	MS.gene35938:CDS	35.0%
	AGAGGATAAACCATTAACAG+AGG	+	chr8.2:41933534-41933553	None:intergenic	35.0%
	AGATACAGCTAAGAAAAGGT+GGG	+	chr8.2:41932800-41932819	None:intergenic	35.0%
	ATACAGGACAAAATTCAGCA+AGG	-	chr8.2:41933202-41933221	MS.gene35938:CDS	35.0%
	CAGAAATTCTGCAATGACAT+TGG	-	chr8.2:41933299-41933318	MS.gene35938:CDS	35.0%
	GAAAAGAACAATGCTGGTAA+TGG	-	chr8.2:41933440-41933459	MS.gene35938:CDS	35.0%
	GTGTAGATACAGCTAAGAAA+AGG	+	chr8.2:41932804-41932823	None:intergenic	35.0%
	GTTCATGTTTCCTCTGTTAA+TGG	-	chr8.2:41933521-41933540	MS.gene35938:CDS	35.0%
	TAGATACAGCTAAGAAAAGG+TGG	+	chr8.2:41932801-41932820	None:intergenic	35.0%
	TCAGAATCTGATGTTGGAAT+TGG	-	chr8.2:41933386-41933405	MS.gene35938:CDS	35.0%
	TTTGTAAGAAACAACCATGG+AGG	+	chr8.2:41932559-41932578	None:intergenic	35.0%
!	CTAGAGGAGTTTTCAAAGTT+TGG	-	chr8.2:41933327-41933346	MS.gene35938:CDS	35.0%
!!	AATGACATTGGTGTTTCTAG+AGG	-	chr8.2:41933311-41933330	MS.gene35938:CDS	35.0%
!!	ATTGGTGTTGTGGTAATGTT+TGG	+	chr8.2:41932423-41932442	None:intergenic	35.0%
!!	CTTTAAGGTTATTGGTGTTG+TGG	+	chr8.2:41932433-41932452	None:intergenic	35.0%
!!	GCATGGTTTTTCTGAGAAAT+TGG	-	chr8.2:41933241-41933260	MS.gene35938:CDS	35.0%
!!	GTTTTTCTGAGAAATTGGGT+TGG	-	chr8.2:41933246-41933265	MS.gene35938:CDS	35.0%
!!!	TCCTTTGAAGATGGTTTTGA+TGG	+	chr8.2:41933097-41933116	None:intergenic	35.0%
!!!	TTTGAAGATGGTTTTGATGG+TGG	+	chr8.2:41933094-41933113	None:intergenic	35.0%
	AAAAATCATGCTGCATCCCT+AGG	-	chr8.2:41932588-41932607	MS.gene35938:CDS	40.0%
	AGTCACAACAACACAAGTAG+TGG	-	chr8.2:41933170-41933189	MS.gene35938:CDS	40.0%
	ATGGGCTTGAAATTGGACTT+GGG	+	chr8.2:41932941-41932960	None:intergenic	40.0%
	GAAGAGTGATGATAAGAAGG+TGG	+	chr8.2:41932990-41933009	None:intergenic	40.0%
	GCTGAAGAGTGATGATAAGA+AGG	+	chr8.2:41932993-41933012	None:intergenic	40.0%
	GTCACAACAACACAAGTAGT+GGG	-	chr8.2:41933171-41933190	MS.gene35938:CDS	40.0%
	TCATTGGGATTGAGAGATGA+TGG	+	chr8.2:41932651-41932670	None:intergenic	40.0%
	TGCTTTGACTAATTGGACCA+CGG	+	chr8.2:41932884-41932903	None:intergenic	40.0%
!	GTAGTGGGAAAAAGAGATAC+AGG	-	chr8.2:41933186-41933205	MS.gene35938:CDS	40.0%
!	TGTGACTGTTGTTGTTGTTG+TGG	+	chr8.2:41933157-41933176	None:intergenic	40.0%
!	TTGGGCTTGTACTTTGACTT+GGG	+	chr8.2:41932911-41932930	None:intergenic	40.0%
!!	GCAAAAGAGTGATGATGGTT+TGG	-	chr8.2:41933274-41933293	MS.gene35938:CDS	40.0%
!!	GCTGGTAATGGTAATGATGA+TGG	-	chr8.2:41933452-41933471	MS.gene35938:CDS	40.0%
!!	TGATCATGATCAGAGTGTTG+TGG	+	chr8.2:41933062-41933081	None:intergenic	40.0%
!!!	AAGAAAAGGTGGGCTGTTTT+TGG	+	chr8.2:41932790-41932809	None:intergenic	40.0%
	ATCAAGTGCATGTCCACCTA+GGG	+	chr8.2:41932607-41932626	None:intergenic	45.0%
	ATTGGACTTGGGCTATGACT+TGG	+	chr8.2:41932930-41932949	None:intergenic	45.0%
	CAGCACATTTGAGGGATCTT+GGG	+	chr8.2:41932674-41932693	None:intergenic	45.0%
	CTTGGGCTTGTACTTTGACT+TGG	+	chr8.2:41932912-41932931	None:intergenic	45.0%
	GAAACAACCATGGAGGATGA+TGG	+	chr8.2:41932552-41932571	None:intergenic	45.0%
	GAAGGTGGTAAATGTGAGAG+TGG	+	chr8.2:41932975-41932994	None:intergenic	45.0%
	GAGCAGAAAGAGAAGATGCA+TGG	-	chr8.2:41933224-41933243	MS.gene35938:CDS	45.0%
	GGGCTTGTGCTTTGACTAAT+TGG	+	chr8.2:41932891-41932910	None:intergenic	45.0%
	TTGAGGGATCTTGGGTCATT+GGG	+	chr8.2:41932666-41932685	None:intergenic	45.0%
	TTGGACTTGGGCTATGACTT+GGG	+	chr8.2:41932929-41932948	None:intergenic	45.0%
	TTTGAGGGATCTTGGGTCAT+TGG	+	chr8.2:41932667-41932686	None:intergenic	45.0%
!	CCAAGAGCTAAAAGCATGTG+AGG	+	chr8.2:41933017-41933036	None:intergenic	45.0%
!	GATGGGCTTGAAATTGGACT+TGG	+	chr8.2:41932942-41932961	None:intergenic	45.0%
!	TTGGGATTGAGAGATGATGG+TGG	+	chr8.2:41932648-41932667	None:intergenic	45.0%
!!	GGTGATGATGGGCTTGAAAT+TGG	+	chr8.2:41932948-41932967	None:intergenic	45.0%
!!	TCATGATCAGAGTGTTGTGG+TGG	+	chr8.2:41933059-41933078	None:intergenic	45.0%
!!!	CACATGCTTTTAGCTCTTGG+TGG	-	chr8.2:41933017-41933036	MS.gene35938:CDS	45.0%
!!!	CCTCACATGCTTTTAGCTCT+TGG	-	chr8.2:41933014-41933033	MS.gene35938:CDS	45.0%
!!!	GAAGATGGTTTTGATGGTGG+TGG	+	chr8.2:41933091-41933110	None:intergenic	45.0%
	AATCATGCTGCATCCCTAGG+TGG	-	chr8.2:41932591-41932610	MS.gene35938:CDS	50.0%
	ACAACCACCATCATCCTCCA+TGG	-	chr8.2:41932542-41932561	MS.gene35938:CDS	50.0%
	AGCCACAAGCAGCACATTTG+AGG	+	chr8.2:41932683-41932702	None:intergenic	50.0%
	CATCAAGTGCATGTCCACCT+AGG	+	chr8.2:41932608-41932627	None:intergenic	50.0%
	CTAGGTGGACATGCACTTGA+TGG	-	chr8.2:41932606-41932625	MS.gene35938:CDS	50.0%
	GCAGCACATTTGAGGGATCT+TGG	+	chr8.2:41932675-41932694	None:intergenic	50.0%
	GCCACAAGCAGCACATTTGA+GGG	+	chr8.2:41932682-41932701	None:intergenic	50.0%
	GGTAAATGTGAGAGTGGTGG+TGG	+	chr8.2:41932969-41932988	None:intergenic	50.0%
	GGTGGTAAATGTGAGAGTGG+TGG	+	chr8.2:41932972-41932991	None:intergenic	50.0%
	TGACTAATTGGACCACGGTG+TGG	+	chr8.2:41932879-41932898	None:intergenic	50.0%
!	ACAACCATGGAGGATGATGG+TGG	+	chr8.2:41932549-41932568	None:intergenic	50.0%
!	GATGGTGGTTGTTGCTGTAG+CGG	+	chr8.2:41932534-41932553	None:intergenic	50.0%
!	GGACATGCACTTGATGGATG+TGG	-	chr8.2:41932612-41932631	MS.gene35938:CDS	50.0%
!!	AGAGTGGTGGTGGTGATGAT+GGG	+	chr8.2:41932959-41932978	None:intergenic	50.0%
!!	GGTGGTGGAACTGTTGTTGA+AGG	+	chr8.2:41932831-41932850	None:intergenic	50.0%
!!	TCCCTCAAATGTGCTGCTTG+TGG	-	chr8.2:41932678-41932697	MS.gene35938:CDS	50.0%
!!	TGGTGGTGGTTGTTGTGAGT+TGG	+	chr8.2:41932488-41932507	None:intergenic	50.0%
!!!	GATGGTTTTGATGGTGGTGG+TGG	+	chr8.2:41933088-41933107	None:intergenic	50.0%
	GCTGACTGTTGCCATAGTGG+TGG	+	chr8.2:41932766-41932785	None:intergenic	55.0%
	GGATGTGCTCTTGTGGCTCA+CGG	+	chr8.2:41932725-41932744	None:intergenic	55.0%
	GTGGTGAGGATGTGCTCTTG+TGG	+	chr8.2:41932732-41932751	None:intergenic	55.0%
	TGTTGCCATAGTGGTGGTCG+AGG	+	chr8.2:41932760-41932779	None:intergenic	55.0%
!!	GAGAGTGGTGGTGGTGATGA+TGG	+	chr8.2:41932960-41932979	None:intergenic	55.0%
	ATTGGACCACGGTGTGGCAG+TGG	+	chr8.2:41932873-41932892	None:intergenic	60.0%
	CACGACCTCGACCACCACTA+TGG	-	chr8.2:41932752-41932771	MS.gene35938:CDS	60.0%
	CATAGTGGTGGTCGAGGTCG+TGG	+	chr8.2:41932754-41932773	None:intergenic	60.0%
	CCACGGTGTGGCAGTGGTAA+CGG	+	chr8.2:41932867-41932886	None:intergenic	60.0%
	GCTCACGGCGGTGGAAATTC+CGG	+	chr8.2:41932710-41932729	None:intergenic	60.0%
	GGTGGTTGTTGCTGTAGCGG+TGG	+	chr8.2:41932531-41932550	None:intergenic	60.0%
	GGTTGTTGCTGTAGCGGTGG+TGG	+	chr8.2:41932528-41932547	None:intergenic	60.0%
	TGTGCTCTTGTGGCTCACGG+CGG	+	chr8.2:41932722-41932741	None:intergenic	60.0%
!	TGTTGCTGTAGCGGTGGTGG+TGG	+	chr8.2:41932525-41932544	None:intergenic	60.0%
!!	AACGGTGGTGGTGGTTGTGG+TGG	+	chr8.2:41932849-41932868	None:intergenic	60.0%
!!	GGCGCTGACTGTTGCCATAG+TGG	+	chr8.2:41932769-41932788	None:intergenic	60.0%
!!	GGTAACGGTGGTGGTGGTTG+TGG	+	chr8.2:41932852-41932871	None:intergenic	60.0%
!!	TGTGGCAGTGGTAACGGTGG+TGG	+	chr8.2:41932861-41932880	None:intergenic	60.0%
	AGTGGTGGTCGAGGTCGTGG+TGG	+	chr8.2:41932751-41932770	None:intergenic	65.0%
	CACGGCGGTGGAAATTCCGG+TGG	+	chr8.2:41932707-41932726	None:intergenic	65.0%
	CCGTTACCACTGCCACACCG+TGG	-	chr8.2:41932864-41932883	MS.gene35938:CDS	65.0%
!	TGGTCGAGGTCGTGGTGGTG+AGG	+	chr8.2:41932746-41932765	None:intergenic	65.0%
!!	CGGTGTGGCAGTGGTAACGG+TGG	+	chr8.2:41932864-41932883	None:intergenic	65.0%
!!	GGCAGTGGTAACGGTGGTGG+TGG	+	chr8.2:41932858-41932877	None:intergenic	65.0%
!!	GGTGGTGGTGGTTGTGGTGG+TGG	+	chr8.2:41932846-41932865	None:intergenic	65.0%
!!	GTGCTGCTTGTGGCTGCCAC+CGG	-	chr8.2:41932688-41932707	MS.gene35938:CDS	65.0%
!!	TGCTGTAGCGGTGGTGGTGG+TGG	+	chr8.2:41932522-41932541	None:intergenic	65.0%
!!	TGGTGGAGTGGTGGTGGTGG+TGG	+	chr8.2:41932502-41932521	None:intergenic	65.0%
!!	TGGTGGTGGAGTGGTGGTGG+TGG	+	chr8.2:41932505-41932524	None:intergenic	65.0%
!!	TGGTGGTGGTGGAGTGGTGG+TGG	+	chr8.2:41932508-41932527	None:intergenic	65.0%
!!	TGGTGGTGGTGGTGGAGTGG+TGG	+	chr8.2:41932511-41932530	None:intergenic	65.0%
!!	TGTAGCGGTGGTGGTGGTGG+TGG	+	chr8.2:41932519-41932538	None:intergenic	65.0%
	GCTCTTGTGGCTCACGGCGG+TGG	+	chr8.2:41932719-41932738	None:intergenic	70.0%
!!	CGGTGGTGGTGGTGGTGGAG+TGG	+	chr8.2:41932514-41932533	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	41932375	41933556	41932375	ID=MS.gene35938
chr8.2	mRNA	41932375	41933556	41932375	ID=MS.gene35938.t1;Parent=MS.gene35938
chr8.2	exon	41932375	41933556	41932375	ID=MS.gene35938.t1.exon1;Parent=MS.gene35938.t1
chr8.2	CDS	41932375	41933556	41932375	ID=cds.MS.gene35938.t1;Parent=MS.gene35938.t1

Gene Sequence

>MS.gene35938

ATGGACATGACTTCAAGAAACATAGATGCAGATTCTCAAACACAACCAAACATTACCACAACACCAATAACCTTAAAGTCTTCATCTTTCACAAACGGAACACATAAACGCCAACTCACAACAACCACCACCACCACCACTCCACCACCACCACCACCGCTACAGCAACAACCACCATCATCCTCCATGGTTGTTTCTTACAAAGAATGTCTCAAAAATCATGCTGCATCCCTAGGTGGACATGCACTTGATGGATGTGGTGAATTCATGCCACCATCATCTCTCAATCCCAATGACCCAAGATCCCTCAAATGTGCTGCTTGTGGCTGCCACCGGAATTTCCACCGCCGTGAGCCACAAGAGCACATCCTCACCACCACGACCTCGACCACCACTATGGCAACAGTCAGCGCCAAAAACAGCCCACCTTTTCTTAGCTGTATCTACACAACTCCTTCAACAACAGTTCCACCACCACAACCACCACCACCGTTACCACTGCCACACCGTGGTCCAATTAGTCAAAGCACAAGCCCAAGTCAAAGTACAAGCCCAAGTCATAGCCCAAGTCCAATTTCAAGCCCATCATCACCACCACCACTCTCACATTTACCACCTTCTTATCATCACTCTTCAGCTCCTCACATGCTTTTAGCTCTTGGTGGAAATGCTTATTCAACACCACCACAACACTCTGATCATGATCAACACCACCACCACCATCAAAACCATCTTCAAAGGAATCTCAATTTTGCTTCATCTGTTGTTAAGCTTGAAAGCCACAACAACAACAACAGTCACAACAACACAAGTAGTGGGAAAAAGAGATACAGGACAAAATTCAGCAAGGAGCAGAAAGAGAAGATGCATGGTTTTTCTGAGAAATTGGGTTGGAAAATGCAAAAGAGTGATGATGGTTTGGTTCAGAAATTCTGCAATGACATTGGTGTTTCTAGAGGAGTTTTCAAAGTTTGGATGCATAACAACAAGAATAGTAGCTTGAGGAAGAAATCAGAATCTGATGTTGGAATTGGAATTGCTACTCAAATTGCTACTCAAAATGATGAAAAGAACAATGCTGGTAATGGTAATGATGATGGTTCCAACAATGTCATTCATCATATGAATGAAGATGGGTGTGTCAATGTTCATGTTTCCTCTGTTAATGGTTTATCCTCTTAA

Protein sequence

>MS.gene35938.t1

MDMTSRNIDADSQTQPNITTTPITLKSSSFTNGTHKRQLTTTTTTTTPPPPPPLQQQPPSSSMVVSYKECLKNHAASLGGHALDGCGEFMPPSSLNPNDPRSLKCAACGCHRNFHRREPQEHILTTTTSTTTMATVSAKNSPPFLSCIYTTPSTTVPPPQPPPPLPLPHRGPISQSTSPSQSTSPSHSPSPISSPSSPPPLSHLPPSYHHSSAPHMLLALGGNAYSTPPQHSDHDQHHHHHQNHLQRNLNFASSVVKLESHNNNNSHNNTSSGKKRYRTKFSKEQKEKMHGFSEKLGWKMQKSDDGLVQKFCNDIGVSRGVFKVWMHNNKNSSLRKKSESDVGIGIATQIATQNDEKNNAGNGNDDGSNNVIHHMNEDGCVNVHVSSVNGLSS