Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36132.t1 | XP_013453000.1 | 96.5 | 603 | 21 | 0 | 1 | 603 | 1 | 603 | 1.20E-259 | 905.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36132.t1 | Q6Q151 | 80.1 | 418 | 73 | 5 | 1 | 415 | 1 | 411 | 6.8e-174 | 612.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36132.t1 | G7KN14 | 96.5 | 603 | 21 | 0 | 1 | 603 | 18 | 620 | 9.0e-260 | 905.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene36132 | 0.835798 | 1.36E-56 | -1.69E-46 |
| MS.gene049190 | MS.gene36132 | 0.819564 | 1.09E-52 | -1.69E-46 |
| MS.gene050551 | MS.gene36132 | 0.834403 | 3.06E-56 | -1.69E-46 |
| MS.gene050807 | MS.gene36132 | 0.804798 | 1.82E-49 | -1.69E-46 |
| MS.gene051102 | MS.gene36132 | 0.821325 | 4.29E-53 | -1.69E-46 |
| MS.gene05157 | MS.gene36132 | 0.838828 | 2.28E-57 | -1.69E-46 |
| MS.gene051744 | MS.gene36132 | 0.807174 | 5.75E-50 | -1.69E-46 |
| MS.gene052000 | MS.gene36132 | 0.810731 | 9.96E-51 | -1.69E-46 |
| MS.gene052514 | MS.gene36132 | 0.804169 | 2.46E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene36132 | 0.843671 | 1.21E-58 | -1.69E-46 |
| MS.gene052609 | MS.gene36132 | 0.804217 | 2.40E-49 | -1.69E-46 |
| MS.gene052611 | MS.gene36132 | 0.810196 | 1.30E-50 | -1.69E-46 |
| MS.gene052863 | MS.gene36132 | 0.800882 | 1.17E-48 | -1.69E-46 |
| MS.gene053079 | MS.gene36132 | 0.808428 | 3.11E-50 | -1.69E-46 |
| MS.gene053144 | MS.gene36132 | 0.842062 | 3.25E-58 | -1.69E-46 |
| MS.gene053226 | MS.gene36132 | 0.800184 | 1.62E-48 | -1.69E-46 |
| MS.gene053581 | MS.gene36132 | 0.801576 | 8.44E-49 | -1.69E-46 |
| MS.gene05447 | MS.gene36132 | 0.802401 | 5.71E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene36132 | 0.834852 | 2.36E-56 | -1.69E-46 |
| MS.gene054651 | MS.gene36132 | 0.806856 | 6.71E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene36132 | 0.836164 | 1.10E-56 | -1.69E-46 |
| MS.gene055466 | MS.gene36132 | 0.829795 | 4.21E-55 | -1.69E-46 |
| MS.gene055468 | MS.gene36132 | 0.808967 | 2.39E-50 | -1.69E-46 |
| MS.gene055469 | MS.gene36132 | 0.817375 | 3.41E-52 | -1.69E-46 |
| MS.gene055513 | MS.gene36132 | 0.80367 | 3.12E-49 | -1.69E-46 |
| MS.gene055537 | MS.gene36132 | 0.804616 | 1.98E-49 | -1.69E-46 |
| MS.gene055580 | MS.gene36132 | -0.817307 | 3.53E-52 | -1.69E-46 |
| MS.gene055890 | MS.gene36132 | 0.811581 | 6.52E-51 | -1.69E-46 |
| MS.gene055891 | MS.gene36132 | 0.809672 | 1.69E-50 | -1.69E-46 |
| MS.gene056043 | MS.gene36132 | -0.800426 | 1.45E-48 | -1.69E-46 |
| MS.gene056308 | MS.gene36132 | 0.818345 | 2.06E-52 | -1.69E-46 |
| MS.gene056507 | MS.gene36132 | 0.817827 | 2.70E-52 | -1.69E-46 |
| MS.gene056553 | MS.gene36132 | 0.808405 | 3.15E-50 | -1.69E-46 |
| MS.gene058010 | MS.gene36132 | 0.810179 | 1.31E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene36132 | 0.80897 | 2.38E-50 | -1.69E-46 |
| MS.gene05894 | MS.gene36132 | 0.808149 | 3.57E-50 | -1.69E-46 |
| MS.gene060587 | MS.gene36132 | 0.81809 | 2.35E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene36132 | MS.gene48433 | PPI |
| MS.gene055771 | MS.gene36132 | PPI |
| MS.gene36132 | MS.gene031671 | PPI |
| MS.gene36132 | MS.gene052174 | PPI |
| MS.gene36132 | MS.gene006634 | PPI |
| MS.gene31419 | MS.gene36132 | PPI |
| MS.gene36132 | MS.gene013049 | PPI |
| MS.gene020412 | MS.gene36132 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36132.t1 | MTR_8g442420 | 97.355 | 605 | 16 | 0 | 1 | 605 | 1 | 605 | 0.0 | 1198 |
| MS.gene36132.t1 | MTR_6g084140 | 96.186 | 603 | 23 | 0 | 1 | 603 | 18 | 620 | 0.0 | 1184 |
| MS.gene36132.t1 | MTR_6g084140 | 96.186 | 603 | 23 | 0 | 1 | 603 | 1 | 603 | 0.0 | 1184 |
| MS.gene36132.t1 | MTR_7g105220 | 41.509 | 159 | 85 | 2 | 3 | 161 | 12 | 162 | 1.84e-34 | 128 |
| MS.gene36132.t1 | MTR_8g036015 | 39.157 | 166 | 93 | 2 | 1 | 166 | 1 | 158 | 4.88e-32 | 121 |
| MS.gene36132.t1 | MTR_5g015500 | 39.521 | 167 | 93 | 2 | 3 | 169 | 347 | 505 | 3.93e-31 | 128 |
| MS.gene36132.t1 | MTR_5g015500 | 39.521 | 167 | 93 | 2 | 3 | 169 | 307 | 465 | 4.06e-31 | 128 |
| MS.gene36132.t1 | MTR_2g085075 | 39.375 | 160 | 89 | 2 | 2 | 161 | 463 | 614 | 5.17e-30 | 125 |
| MS.gene36132.t1 | MTR_2g023120 | 41.667 | 168 | 88 | 5 | 3 | 168 | 15 | 174 | 1.96e-25 | 110 |
| MS.gene36132.t1 | MTR_7g095750 | 36.943 | 157 | 77 | 5 | 12 | 156 | 23 | 169 | 3.25e-22 | 101 |
| MS.gene36132.t1 | MTR_3g117750 | 38.922 | 167 | 81 | 6 | 9 | 164 | 25 | 181 | 1.76e-21 | 92.8 |
| MS.gene36132.t1 | MTR_7g116340 | 35.220 | 159 | 82 | 5 | 10 | 157 | 18 | 166 | 1.67e-20 | 89.4 |
| MS.gene36132.t1 | MTR_4g075290 | 37.342 | 158 | 78 | 7 | 10 | 156 | 18 | 165 | 9.70e-19 | 84.3 |
| MS.gene36132.t1 | MTR_3g463900 | 37.342 | 158 | 78 | 7 | 10 | 156 | 48 | 195 | 1.79e-18 | 84.7 |
| MS.gene36132.t1 | MTR_1g117010 | 39.869 | 153 | 77 | 6 | 9 | 156 | 93 | 235 | 2.55e-18 | 85.1 |
| MS.gene36132.t1 | MTR_1g117010 | 39.869 | 153 | 77 | 6 | 9 | 156 | 93 | 235 | 2.55e-18 | 85.1 |
| MS.gene36132.t1 | MTR_7g110980 | 41.353 | 133 | 65 | 5 | 8 | 136 | 108 | 231 | 4.15e-18 | 85.1 |
| MS.gene36132.t1 | MTR_4g073650 | 34.591 | 159 | 84 | 5 | 9 | 156 | 59 | 208 | 7.81e-18 | 83.2 |
| MS.gene36132.t1 | MTR_3g070500 | 36.875 | 160 | 80 | 7 | 8 | 156 | 76 | 225 | 1.15e-17 | 83.2 |
| MS.gene36132.t1 | MTR_8g079690 | 34.591 | 159 | 83 | 5 | 10 | 156 | 18 | 167 | 3.40e-17 | 84.0 |
| MS.gene36132.t1 | MTR_8g040180 | 33.775 | 151 | 81 | 5 | 10 | 150 | 32 | 173 | 5.34e-17 | 79.7 |
| MS.gene36132.t1 | MTR_1g085560 | 38.095 | 168 | 82 | 9 | 8 | 167 | 97 | 250 | 1.07e-16 | 80.5 |
| MS.gene36132.t1 | MTR_4g086760 | 30.818 | 159 | 89 | 4 | 10 | 156 | 18 | 167 | 2.14e-16 | 80.9 |
| MS.gene36132.t1 | MTR_4g086760 | 30.818 | 159 | 89 | 4 | 10 | 156 | 18 | 167 | 2.43e-16 | 81.3 |
| MS.gene36132.t1 | MTR_4g086760 | 30.818 | 159 | 89 | 4 | 10 | 156 | 18 | 167 | 2.51e-16 | 80.9 |
| MS.gene36132.t1 | MTR_3g107660 | 33.121 | 157 | 83 | 5 | 12 | 156 | 26 | 172 | 2.96e-14 | 76.6 |
| MS.gene36132.t1 | MTR_1g011980 | 32.484 | 157 | 83 | 5 | 12 | 156 | 23 | 168 | 7.10e-14 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36132.t1 | AT1G53720 | 69.412 | 510 | 131 | 10 | 1 | 506 | 1 | 489 | 0.0 | 667 |
| MS.gene36132.t1 | AT1G53720 | 85.460 | 337 | 49 | 0 | 1 | 337 | 1 | 337 | 0.0 | 614 |
| MS.gene36132.t1 | AT1G53780 | 50.446 | 224 | 91 | 3 | 78 | 301 | 4 | 207 | 2.27e-53 | 192 |
| MS.gene36132.t1 | AT1G53780 | 48.058 | 206 | 87 | 3 | 96 | 301 | 1 | 186 | 4.55e-43 | 163 |
| MS.gene36132.t1 | AT1G53780 | 48.058 | 206 | 87 | 3 | 96 | 301 | 1 | 186 | 4.55e-43 | 163 |
| MS.gene36132.t1 | AT1G53780 | 48.058 | 206 | 87 | 3 | 96 | 301 | 1 | 186 | 4.59e-43 | 163 |
| MS.gene36132.t1 | AT2G36130 | 43.125 | 160 | 83 | 3 | 3 | 162 | 12 | 163 | 2.52e-37 | 136 |
| MS.gene36132.t1 | AT1G01940 | 39.157 | 166 | 93 | 2 | 1 | 166 | 1 | 158 | 1.02e-31 | 120 |
| MS.gene36132.t1 | AT3G44600 | 40.625 | 160 | 87 | 2 | 2 | 161 | 477 | 628 | 3.59e-30 | 126 |
| MS.gene36132.t1 | AT5G67530 | 39.375 | 160 | 89 | 2 | 7 | 166 | 350 | 501 | 9.21e-29 | 121 |
| MS.gene36132.t1 | AT4G33060 | 39.053 | 169 | 92 | 5 | 3 | 168 | 15 | 175 | 2.14e-27 | 116 |
| MS.gene36132.t1 | AT2G21130 | 38.365 | 159 | 75 | 6 | 10 | 156 | 19 | 166 | 7.54e-23 | 96.3 |
| MS.gene36132.t1 | AT4G38740 | 38.994 | 159 | 74 | 7 | 10 | 156 | 18 | 165 | 2.10e-22 | 95.1 |
| MS.gene36132.t1 | AT5G13120 | 41.447 | 152 | 74 | 6 | 10 | 156 | 107 | 248 | 6.51e-21 | 93.2 |
| MS.gene36132.t1 | AT5G13120 | 41.447 | 152 | 74 | 6 | 10 | 156 | 103 | 244 | 7.57e-21 | 92.8 |
| MS.gene36132.t1 | AT2G16600 | 38.750 | 160 | 77 | 6 | 8 | 156 | 17 | 166 | 3.36e-20 | 88.6 |
| MS.gene36132.t1 | AT3G63400 | 33.721 | 172 | 87 | 6 | 2 | 156 | 8 | 169 | 3.46e-20 | 95.1 |
| MS.gene36132.t1 | AT3G63400 | 33.721 | 172 | 87 | 6 | 2 | 156 | 8 | 169 | 3.46e-20 | 95.1 |
| MS.gene36132.t1 | AT3G63400 | 33.721 | 172 | 87 | 6 | 2 | 156 | 8 | 169 | 3.46e-20 | 95.1 |
| MS.gene36132.t1 | AT3G63400 | 33.721 | 172 | 87 | 6 | 2 | 156 | 8 | 169 | 4.89e-20 | 92.8 |
| MS.gene36132.t1 | AT2G29960 | 35.625 | 160 | 82 | 5 | 8 | 156 | 44 | 193 | 9.92e-20 | 88.2 |
| MS.gene36132.t1 | AT2G29960 | 35.625 | 160 | 82 | 5 | 8 | 156 | 44 | 193 | 9.92e-20 | 88.2 |
| MS.gene36132.t1 | AT3G56070 | 34.731 | 167 | 88 | 6 | 10 | 165 | 18 | 174 | 1.42e-19 | 87.0 |
| MS.gene36132.t1 | AT3G56070 | 34.731 | 167 | 88 | 6 | 10 | 165 | 18 | 174 | 1.42e-19 | 87.0 |
| MS.gene36132.t1 | AT4G34870 | 36.000 | 150 | 76 | 5 | 7 | 145 | 15 | 155 | 2.05e-18 | 83.6 |
| MS.gene36132.t1 | AT5G58710 | 35.625 | 160 | 82 | 7 | 8 | 156 | 47 | 196 | 2.37e-18 | 84.3 |
| MS.gene36132.t1 | AT3G62030 | 43.511 | 131 | 61 | 7 | 10 | 136 | 109 | 230 | 5.36e-18 | 84.7 |
| MS.gene36132.t1 | AT3G62030 | 43.511 | 131 | 61 | 7 | 10 | 136 | 108 | 229 | 5.47e-18 | 84.7 |
| MS.gene36132.t1 | AT3G62030 | 43.511 | 131 | 61 | 7 | 10 | 136 | 162 | 283 | 1.32e-17 | 84.7 |
| MS.gene36132.t1 | AT4G34960 | 33.333 | 159 | 86 | 4 | 9 | 156 | 60 | 209 | 3.20e-17 | 81.6 |
| MS.gene36132.t1 | AT3G55920 | 37.975 | 158 | 77 | 7 | 10 | 156 | 73 | 220 | 3.66e-17 | 81.6 |
| MS.gene36132.t1 | AT2G15790 | 33.962 | 159 | 84 | 4 | 10 | 156 | 18 | 167 | 5.58e-17 | 83.6 |
| MS.gene36132.t1 | AT2G16600 | 38.255 | 149 | 71 | 6 | 8 | 156 | 17 | 144 | 1.78e-16 | 77.4 |
| MS.gene36132.t1 | AT4G32420 | 33.571 | 140 | 72 | 4 | 12 | 139 | 23 | 153 | 1.19e-14 | 77.8 |
| MS.gene36132.t1 | AT2G38730 | 32.450 | 151 | 83 | 5 | 10 | 150 | 46 | 187 | 9.81e-14 | 70.9 |
| MS.gene36132.t1 | AT1G44478 | 59.259 | 54 | 19 | 2 | 39 | 89 | 14 | 67 | 4.13e-13 | 68.9 |
Find 134 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATTGTTCAGGTTTCTTTA+TGG | 0.175651 | 8.3:-51838367 | MS.gene36132:intron |
| ATACATGCGGAAAGATAATA+AGG | 0.255757 | 8.3:-51833827 | MS.gene36132:CDS |
| TGGTGTTTCGTTTCTCTCTT+TGG | 0.263367 | 8.3:+51833423 | None:intergenic |
| CGTTTGTAATCATCGCCATC+TGG | 0.290713 | 8.3:+51832949 | None:intergenic |
| TTTCCTTCTGGTGAAGCTTC+AGG | 0.292417 | 8.3:+51836613 | None:intergenic |
| CCTTTCTATGTCTTTCTTGT+CGG | 0.292690 | 8.3:+51833200 | None:intergenic |
| CCCCTCCTTACCTCGTCTTT+AGG | 0.301314 | 8.3:+51836589 | None:intergenic |
| GATCAAAGGAAGCACATTCT+AGG | 0.318080 | 8.3:-51835475 | MS.gene36132:CDS |
| GGAGGGATGACAGAGATTAT+AGG | 0.338284 | 8.3:-51833035 | MS.gene36132:CDS |
| CAAGATGTGAAGGTTGATTC+TGG | 0.347476 | 8.3:-51832988 | MS.gene36132:CDS |
| AGCAGAGGGCTTGAAGGAAA+TGG | 0.385620 | 8.3:-51833273 | MS.gene36132:CDS |
| TTGCTTTATCTCCACCCCGC+TGG | 0.395049 | 8.3:+51833569 | None:intergenic |
| TTCTTGTCGGCATGAAAATC+CGG | 0.400986 | 8.3:+51833213 | None:intergenic |
| GTACTGATGGTGACGAGTTT+AGG | 0.401231 | 8.3:-51840070 | MS.gene36132:CDS |
| TGGGTTTAATTGTTCATCCA+TGG | 0.402075 | 8.3:+51835520 | None:intergenic |
| GATGACCTTGATTACCTTGA+CGG | 0.406436 | 8.3:-51838082 | MS.gene36132:CDS |
| GAAGATGTGAAGATTGATTC+CGG | 0.407988 | 8.3:-51832901 | MS.gene36132:CDS |
| TGCTTTATCTCCACCCCGCT+GGG | 0.416235 | 8.3:+51833570 | None:intergenic |
| TTTATTTCATACTGTTCAAA+AGG | 0.425875 | 8.3:-51839855 | MS.gene36132:CDS |
| GACAGAGTTCGAAGACAAAC+TGG | 0.432726 | 8.3:-51834415 | MS.gene36132:intron |
| TTCATGGTGTAGATACGAAA+TGG | 0.436440 | 8.3:-51833472 | MS.gene36132:intron |
| ACTGGTGATCCTACGGGAAC+TGG | 0.436851 | 8.3:-51839818 | MS.gene36132:CDS |
| TTCTTTATGGTGACCAAGCT+CGG | 0.438980 | 8.3:-51838354 | MS.gene36132:CDS |
| GGGAAGGTCGTGAACATAGA+AGG | 0.446283 | 8.3:-51832807 | MS.gene36132:CDS |
| GGGTTTAATTGTTCATCCAT+GGG | 0.447168 | 8.3:+51835521 | None:intergenic |
| CGTTTGTAATCCACATCATC+CGG | 0.448572 | 8.3:+51832862 | None:intergenic |
| ATAACCTCTTCAAGTTCTCC+TGG | 0.449225 | 8.3:+51835500 | None:intergenic |
| GATCATCAAAAGGATCTTCC+AGG | 0.462705 | 8.3:+51836659 | None:intergenic |
| TCATAGAGGTCGTAGGGATC+AGG | 0.464715 | 8.3:-51833337 | MS.gene36132:CDS |
| AGATTACCCACCTCAGTAAC+CGG | 0.469687 | 8.3:+51835279 | None:intergenic |
| CAGGCTCGAATAACAGAGAT+AGG | 0.473703 | 8.3:-51833308 | MS.gene36132:CDS |
| TGCTCAGACTGGTGATCCTA+CGG | 0.478484 | 8.3:-51839825 | MS.gene36132:CDS |
| AGGTCGTAGGGATCAGGAAA+TGG | 0.481528 | 8.3:-51833331 | MS.gene36132:CDS |
| CCTACGGGAACTGGCACTGC+CGG | 0.482878 | 8.3:-51839809 | MS.gene36132:CDS |
| GGAAAGAGGTGCAAGAGATC+CGG | 0.484681 | 8.3:-51833232 | MS.gene36132:CDS |
| GACTTTGACTAGAATTAATG+AGG | 0.486216 | 8.3:-51836845 | MS.gene36132:CDS |
| TGTCATCCCTCCTATCCAAA+TGG | 0.486825 | 8.3:+51833046 | None:intergenic |
| GATCTAAAGCATTCTAAGAC+TGG | 0.487196 | 8.3:-51838307 | MS.gene36132:CDS |
| GAGGCTTATGCCGATGGAAA+GGG | 0.489014 | 8.3:-51836826 | MS.gene36132:CDS |
| GACGGGTCAGTCGAGATGAT+AGG | 0.495183 | 8.3:-51833086 | MS.gene36132:CDS |
| TCCTATGTCTGTAATCCTCA+TGG | 0.495780 | 8.3:+51832830 | None:intergenic |
| GATAGAAGCAGAGGGCTTGA+AGG | 0.500538 | 8.3:-51833279 | MS.gene36132:CDS |
| AGAGAATTTGAATGCTTCAC+AGG | 0.509447 | 8.3:-51838260 | MS.gene36132:intron |
| GGAGGTTTAACCTCAGCATC+AGG | 0.513231 | 8.3:+51835333 | None:intergenic |
| TGAAGAGGTTATTAGATCAA+AGG | 0.514059 | 8.3:-51835489 | MS.gene36132:CDS |
| GAAGGACAATAATGCCCAGC+GGG | 0.517309 | 8.3:-51833584 | MS.gene36132:CDS |
| AAGTCCGACTTGAAGATGAT+TGG | 0.517976 | 8.3:-51835547 | MS.gene36132:CDS |
| ACCGTTGCCATGGCTAGTGC+AGG | 0.520936 | 8.3:-51838283 | MS.gene36132:CDS |
| TGAGGCTTATGCCGATGGAA+AGG | 0.522232 | 8.3:-51836827 | MS.gene36132:CDS |
| AAAACGAAGCCCGGATGATG+TGG | 0.522393 | 8.3:-51832872 | MS.gene36132:CDS |
| CCGACAAGAAAGACATAGAA+AGG | 0.522763 | 8.3:-51833200 | MS.gene36132:CDS |
| AGCTGAGGAGGATCATCAAA+AGG | 0.523659 | 8.3:+51836649 | None:intergenic |
| GGTCATCCCTTTCATATCGC+TGG | 0.525387 | 8.3:+51833403 | None:intergenic |
| AAATGGTCTTCCCTTTCCAT+CGG | 0.529485 | 8.3:+51836816 | None:intergenic |
| AGACAAACTGGCATGTGAGC+AGG | 0.532699 | 8.3:-51834403 | MS.gene36132:CDS |
| ATCAAAGGAAGCACATTCTA+GGG | 0.534373 | 8.3:-51835474 | MS.gene36132:CDS |
| TAACCTCTTCAAGTTCTCCT+GGG | 0.534396 | 8.3:+51835501 | None:intergenic |
| ATGACAGCCATTTGGATAGG+AGG | 0.535172 | 8.3:-51833053 | MS.gene36132:CDS |
| CATATTGCTAAGGATTGCAC+TGG | 0.535420 | 8.3:-51833643 | MS.gene36132:CDS |
| GTCAAAGTGTTTCAAAACTG+TGG | 0.535669 | 8.3:-51833855 | MS.gene36132:CDS |
| ATGATAGTCATAGAGGTCGT+AGG | 0.538687 | 8.3:-51833344 | MS.gene36132:CDS |
| TGGAGATGATAAAGCGCGAC+GGG | 0.539341 | 8.3:-51833253 | MS.gene36132:CDS |
| GATAAAGCGCGACGGGAAAG+AGG | 0.540799 | 8.3:-51833246 | MS.gene36132:CDS |
| AGTCTAGCTCATCTTTCCGT+CGG | 0.542668 | 8.3:+51833145 | None:intergenic |
| ATCATTCGTGATCACAAGAC+TGG | 0.543603 | 8.3:-51835005 | MS.gene36132:CDS |
| ACCCACAAAATTTATCATGA+AGG | 0.545661 | 8.3:-51833602 | MS.gene36132:CDS |
| GAAAGACATAGAAAGGCATA+CGG | 0.546150 | 8.3:-51833193 | MS.gene36132:CDS |
| TTTAAAGATGATAGTCATAG+AGG | 0.548618 | 8.3:-51833351 | MS.gene36132:CDS |
| GACAATAATGCCCAGCGGGG+TGG | 0.549668 | 8.3:-51833580 | MS.gene36132:CDS |
| ATTCCTGAAGCTTCACCAGA+AGG | 0.553060 | 8.3:-51836616 | MS.gene36132:CDS |
| TTACTGTGTGCTTTCCGTCA+AGG | 0.553457 | 8.3:+51838068 | None:intergenic |
| ATTAATGAGGCTTATGCCGA+TGG | 0.553811 | 8.3:-51836832 | MS.gene36132:CDS |
| TGATAGATACGCAGAAAGAC+GGG | 0.555258 | 8.3:-51833103 | MS.gene36132:CDS |
| TGAAGATGATTGGGTGCCCA+TGG | 0.556542 | 8.3:-51835537 | MS.gene36132:CDS |
| AGAAGAAAACGAAGCCCAGA+TGG | 0.556598 | 8.3:-51832964 | MS.gene36132:CDS |
| CGAAACACCAGCGATATGAA+AGG | 0.557586 | 8.3:-51833410 | MS.gene36132:CDS |
| TTCCACAGATCATATTGCTA+AGG | 0.559747 | 8.3:-51833653 | MS.gene36132:CDS |
| CAGTGGAAGGCAAGATGTGA+AGG | 0.561529 | 8.3:-51832998 | MS.gene36132:CDS |
| AATCAAGCACACTTACATCC+TGG | 0.562265 | 8.3:-51836677 | MS.gene36132:CDS |
| ATGATAGATACGCAGAAAGA+CGG | 0.564298 | 8.3:-51833104 | MS.gene36132:CDS |
| TGACAGCCATTTGGATAGGA+GGG | 0.564950 | 8.3:-51833052 | MS.gene36132:CDS |
| GAAACACCAGCGATATGAAA+GGG | 0.564974 | 8.3:-51833409 | MS.gene36132:CDS |
| CGTAGGGATCAGGAAATGGC+AGG | 0.568227 | 8.3:-51833327 | MS.gene36132:CDS |
| TGATAGTCATAGAGGTCGTA+GGG | 0.569876 | 8.3:-51833343 | MS.gene36132:CDS |
| ATTCTCTCCTGCACTAGCCA+TGG | 0.569975 | 8.3:+51838276 | None:intergenic |
| AGTCCGACTTGAAGATGATT+GGG | 0.570247 | 8.3:-51835546 | MS.gene36132:CDS |
| CGGACGAAGAAAACGAAGCC+CGG | 0.575786 | 8.3:-51832881 | MS.gene36132:CDS |
| TACATGCGGAAAGATAATAA+GGG | 0.576638 | 8.3:-51833826 | MS.gene36132:intron |
| GTTTGTAATCATCGCCATCT+GGG | 0.576653 | 8.3:+51832950 | None:intergenic |
| ATCCTTAGCAATATGATCTG+TGG | 0.581763 | 8.3:+51833651 | None:intergenic |
| GCTTTCCGTCAAGGTAATCA+AGG | 0.583577 | 8.3:+51838077 | None:intergenic |
| AGAGAACTGAAGACAGTGGA+AGG | 0.586603 | 8.3:-51833011 | MS.gene36132:CDS |
| CAGATGACAGCCATTTGGAT+AGG | 0.587905 | 8.3:-51833056 | MS.gene36132:CDS |
| TAAGACTGGAACCGTTGCCA+TGG | 0.594357 | 8.3:-51838293 | MS.gene36132:CDS |
| AAAGACATAGAAAGGCATAC+GGG | 0.594790 | 8.3:-51833192 | MS.gene36132:CDS |
| ATGTGGATTACAAACGTGGA+AGG | 0.595566 | 8.3:-51832855 | MS.gene36132:CDS |
| ATGCTTTGATTGATGATCGG+AGG | 0.596984 | 8.3:-51833894 | MS.gene36132:CDS |
| AGGTATCGCGATAGAAGCAG+AGG | 0.597484 | 8.3:-51833288 | MS.gene36132:CDS |
| ATGAACTCAGGTAGCTGAGG+AGG | 0.602991 | 8.3:+51836637 | None:intergenic |
| ATTAGGATCAAGTATTACAA+TGG | 0.603475 | 8.3:-51839881 | MS.gene36132:intron |
| ATGAGGATTACAGACATAGG+AGG | 0.605188 | 8.3:-51832828 | MS.gene36132:CDS |
| TGGGGATATTCCTGATGCTG+AGG | 0.605190 | 8.3:-51835343 | MS.gene36132:CDS |
| GTTTGTAATCCACATCATCC+GGG | 0.608590 | 8.3:+51832863 | None:intergenic |
| TCCTGCACTAGCCATGGCAA+CGG | 0.612238 | 8.3:+51838282 | None:intergenic |
| GCTCAGACTGGTGATCCTAC+GGG | 0.622072 | 8.3:-51839824 | MS.gene36132:CDS |
| GATTACAGACATAGGAGGGA+AGG | 0.622385 | 8.3:-51832823 | MS.gene36132:CDS |
| GGTGGTGGTTGCTTCAAATG+TGG | 0.622769 | 8.3:-51833676 | MS.gene36132:CDS |
| AGGAAGAGAACTGAAGACAG+TGG | 0.625301 | 8.3:-51833015 | MS.gene36132:CDS |
| TTACTTGTAGATAGAATCAC+CGG | 0.628207 | 8.3:+51839790 | None:intergenic |
| ATAATGCTTTGATTGATGAT+CGG | 0.628295 | 8.3:-51833897 | MS.gene36132:CDS |
| AACTGTGGTCACAATACATG+CGG | 0.633456 | 8.3:-51833840 | MS.gene36132:CDS |
| AAACCCAGGAGAACTTGAAG+AGG | 0.634019 | 8.3:-51835504 | MS.gene36132:CDS |
| GGTGACGAGTTTAGGCGACA+TGG | 0.635260 | 8.3:-51840062 | MS.gene36132:CDS |
| GAAGCTTCAGGAATGAACTC+AGG | 0.635520 | 8.3:+51836625 | None:intergenic |
| AGCGGGGTGGAGATAAAGCA+AGG | 0.636526 | 8.3:-51833567 | MS.gene36132:intron |
| TGTGGATTACAAACGTGGAA+GGG | 0.639575 | 8.3:-51832854 | MS.gene36132:CDS |
| TAAATTGAATCCGGTTACTG+AGG | 0.648422 | 8.3:-51835289 | MS.gene36132:intron |
| GGAATGAACTCAGGTAGCTG+AGG | 0.654315 | 8.3:+51836634 | None:intergenic |
| TGAGGATTACAGACATAGGA+GGG | 0.662466 | 8.3:-51832827 | MS.gene36132:CDS |
| ACCATGAGGATTACAGACAT+AGG | 0.668184 | 8.3:-51832831 | MS.gene36132:CDS |
| GCACCCAATCATCTTCAAGT+CGG | 0.669949 | 8.3:+51835543 | None:intergenic |
| CCGGCAGTGCCAGTTCCCGT+AGG | 0.670425 | 8.3:+51839809 | None:intergenic |
| ATGGAGATGATAAAGCGCGA+CGG | 0.670835 | 8.3:-51833254 | MS.gene36132:CDS |
| GCGATGATTACAAACGCAGA+CGG | 0.683365 | 8.3:-51832942 | MS.gene36132:CDS |
| CAAACGCAGACGGAATGATG+AGG | 0.684334 | 8.3:-51832932 | MS.gene36132:CDS |
| ATGGATGAACAATTAAACCC+AGG | 0.685321 | 8.3:-51835518 | MS.gene36132:CDS |
| GATGATGTGGATTACAAACG+TGG | 0.687670 | 8.3:-51832859 | MS.gene36132:CDS |
| TGATGATCGGAGGATACATG+TGG | 0.687802 | 8.3:-51833884 | MS.gene36132:CDS |
| ATAGAGATGATGACTACCGA+CGG | 0.699587 | 8.3:-51833161 | MS.gene36132:CDS |
| GGTATCGCGATAGAAGCAGA+GGG | 0.706809 | 8.3:-51833287 | MS.gene36132:CDS |
| AGAAGGAAAACCTAAAGACG+AGG | 0.723882 | 8.3:-51836599 | MS.gene36132:intron |
| CAAACGTGGAAGGGACCATG+AGG | 0.747318 | 8.3:-51832845 | MS.gene36132:CDS |
| AAGGACAATAATGCCCAGCG+GGG | 0.749888 | 8.3:-51833583 | MS.gene36132:CDS |
| TGAAGGACAATAATGCCCAG+CGG | 0.766533 | 8.3:-51833585 | MS.gene36132:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 51832801 | 51840098 | 51832801 | ID=MS.gene36132 |
| chr8.3 | mRNA | 51832801 | 51840098 | 51832801 | ID=MS.gene36132.t1;Parent=MS.gene36132 |
| chr8.3 | exon | 51840001 | 51840098 | 51840001 | ID=MS.gene36132.t1.exon1;Parent=MS.gene36132.t1 |
| chr8.3 | CDS | 51840001 | 51840098 | 51840001 | ID=cds.MS.gene36132.t1;Parent=MS.gene36132.t1 |
| chr8.3 | exon | 51839794 | 51839898 | 51839794 | ID=MS.gene36132.t1.exon2;Parent=MS.gene36132.t1 |
| chr8.3 | CDS | 51839794 | 51839898 | 51839794 | ID=cds.MS.gene36132.t1;Parent=MS.gene36132.t1 |
| chr8.3 | exon | 51838261 | 51838378 | 51838261 | ID=MS.gene36132.t1.exon3;Parent=MS.gene36132.t1 |
| chr8.3 | CDS | 51838261 | 51838378 | 51838261 | ID=cds.MS.gene36132.t1;Parent=MS.gene36132.t1 |
| chr8.3 | exon | 51838072 | 51838122 | 51838072 | ID=MS.gene36132.t1.exon4;Parent=MS.gene36132.t1 |
| chr8.3 | CDS | 51838072 | 51838122 | 51838072 | ID=cds.MS.gene36132.t1;Parent=MS.gene36132.t1 |
| chr8.3 | exon | 51836805 | 51836896 | 51836805 | ID=MS.gene36132.t1.exon5;Parent=MS.gene36132.t1 |
| chr8.3 | CDS | 51836805 | 51836896 | 51836805 | ID=cds.MS.gene36132.t1;Parent=MS.gene36132.t1 |
| chr8.3 | exon | 51836600 | 51836699 | 51836600 | ID=MS.gene36132.t1.exon6;Parent=MS.gene36132.t1 |
| chr8.3 | CDS | 51836600 | 51836699 | 51836600 | ID=cds.MS.gene36132.t1;Parent=MS.gene36132.t1 |
| chr8.3 | exon | 51835457 | 51835579 | 51835457 | ID=MS.gene36132.t1.exon7;Parent=MS.gene36132.t1 |
| chr8.3 | CDS | 51835457 | 51835579 | 51835457 | ID=cds.MS.gene36132.t1;Parent=MS.gene36132.t1 |
| chr8.3 | exon | 51835290 | 51835367 | 51835290 | ID=MS.gene36132.t1.exon8;Parent=MS.gene36132.t1 |
| chr8.3 | CDS | 51835290 | 51835367 | 51835290 | ID=cds.MS.gene36132.t1;Parent=MS.gene36132.t1 |
| chr8.3 | exon | 51835122 | 51835168 | 51835122 | ID=MS.gene36132.t1.exon9;Parent=MS.gene36132.t1 |
| chr8.3 | CDS | 51835122 | 51835168 | 51835122 | ID=cds.MS.gene36132.t1;Parent=MS.gene36132.t1 |
| chr8.3 | exon | 51834979 | 51835034 | 51834979 | ID=MS.gene36132.t1.exon10;Parent=MS.gene36132.t1 |
| chr8.3 | CDS | 51834979 | 51835034 | 51834979 | ID=cds.MS.gene36132.t1;Parent=MS.gene36132.t1 |
| chr8.3 | exon | 51834392 | 51834432 | 51834392 | ID=MS.gene36132.t1.exon11;Parent=MS.gene36132.t1 |
| chr8.3 | CDS | 51834392 | 51834432 | 51834392 | ID=cds.MS.gene36132.t1;Parent=MS.gene36132.t1 |
| chr8.3 | exon | 51833827 | 51833923 | 51833827 | ID=MS.gene36132.t1.exon12;Parent=MS.gene36132.t1 |
| chr8.3 | CDS | 51833827 | 51833923 | 51833827 | ID=cds.MS.gene36132.t1;Parent=MS.gene36132.t1 |
| chr8.3 | exon | 51833568 | 51833697 | 51833568 | ID=MS.gene36132.t1.exon13;Parent=MS.gene36132.t1 |
| chr8.3 | CDS | 51833568 | 51833697 | 51833568 | ID=cds.MS.gene36132.t1;Parent=MS.gene36132.t1 |
| chr8.3 | exon | 51832801 | 51833482 | 51832801 | ID=MS.gene36132.t1.exon14;Parent=MS.gene36132.t1 |
| chr8.3 | CDS | 51832801 | 51833482 | 51832801 | ID=cds.MS.gene36132.t1;Parent=MS.gene36132.t1 |
| Gene Sequence |
| Protein sequence |
