Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36567.t1 | XP_013444255.1 | 99.2 | 637 | 5 | 0 | 1 | 637 | 1 | 637 | 0.00E+00 | 1275 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36567.t1 | P28724 | 45.9 | 451 | 236 | 3 | 191 | 637 | 3 | 449 | 6.9e-116 | 419.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36567.t1 | A0A072TLH9 | 99.2 | 637 | 5 | 0 | 1 | 637 | 1 | 637 | 0.0e+00 | 1275.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene36567 | 0.810027 | 1.41E-50 | -1.69E-46 |
| MS.gene04976 | MS.gene36567 | 0.804486 | 2.11E-49 | -1.69E-46 |
| MS.gene05016 | MS.gene36567 | 0.805075 | 1.59E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene36567 | 0.808173 | 3.53E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene36567 | 0.816864 | 4.44E-52 | -1.69E-46 |
| MS.gene050808 | MS.gene36567 | 0.808322 | 3.28E-50 | -1.69E-46 |
| MS.gene050826 | MS.gene36567 | 0.805079 | 1.59E-49 | -1.69E-46 |
| MS.gene050959 | MS.gene36567 | 0.802479 | 5.50E-49 | -1.69E-46 |
| MS.gene051102 | MS.gene36567 | 0.832735 | 7.98E-56 | -1.69E-46 |
| MS.gene051180 | MS.gene36567 | 0.808402 | 3.15E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene36567 | 0.818987 | 1.47E-52 | -1.69E-46 |
| MS.gene052665 | MS.gene36567 | 0.821638 | 3.63E-53 | -1.69E-46 |
| MS.gene054467 | MS.gene36567 | 0.806554 | 7.77E-50 | -1.69E-46 |
| MS.gene054468 | MS.gene36567 | 0.804449 | 2.15E-49 | -1.69E-46 |
| MS.gene05462 | MS.gene36567 | 0.802933 | 4.43E-49 | -1.69E-46 |
| MS.gene055465 | MS.gene36567 | 0.818342 | 2.06E-52 | -1.69E-46 |
| MS.gene055467 | MS.gene36567 | 0.813052 | 3.11E-51 | -1.69E-46 |
| MS.gene055469 | MS.gene36567 | 0.818915 | 1.53E-52 | -1.69E-46 |
| MS.gene055891 | MS.gene36567 | 0.800268 | 1.56E-48 | -1.69E-46 |
| MS.gene05604 | MS.gene36567 | 0.807706 | 4.43E-50 | -1.69E-46 |
| MS.gene056173 | MS.gene36567 | 0.806731 | 7.13E-50 | -1.69E-46 |
| MS.gene057869 | MS.gene36567 | 0.810448 | 1.15E-50 | -1.69E-46 |
| MS.gene058010 | MS.gene36567 | 0.809986 | 1.44E-50 | -1.69E-46 |
| MS.gene059713 | MS.gene36567 | 0.843736 | 1.17E-58 | -1.69E-46 |
| MS.gene060167 | MS.gene36567 | 0.83587 | 1.30E-56 | -1.69E-46 |
| MS.gene060380 | MS.gene36567 | 0.800449 | 1.43E-48 | -1.69E-46 |
| MS.gene060400 | MS.gene36567 | 0.817952 | 2.53E-52 | -1.69E-46 |
| MS.gene06052 | MS.gene36567 | 0.800289 | 1.55E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36567.t1 | MTR_8g015600 | 99.215 | 637 | 5 | 0 | 1 | 637 | 1 | 637 | 0.0 | 1330 |
| MS.gene36567.t1 | MTR_8g015600 | 98.273 | 637 | 5 | 1 | 1 | 637 | 1 | 631 | 0.0 | 1309 |
| MS.gene36567.t1 | MTR_1g021885 | 63.203 | 231 | 57 | 3 | 1 | 231 | 1 | 203 | 9.69e-86 | 267 |
| MS.gene36567.t1 | MTR_8g015610 | 52.632 | 247 | 39 | 6 | 1 | 235 | 1 | 181 | 4.75e-56 | 205 |
| MS.gene36567.t1 | MTR_5g013470 | 27.154 | 383 | 266 | 4 | 214 | 596 | 6 | 375 | 2.10e-42 | 158 |
| MS.gene36567.t1 | MTR_6g029460 | 27.346 | 373 | 258 | 4 | 224 | 596 | 16 | 375 | 1.77e-41 | 155 |
| MS.gene36567.t1 | MTR_7g085630 | 27.078 | 373 | 259 | 5 | 224 | 596 | 16 | 375 | 9.14e-40 | 151 |
| MS.gene36567.t1 | MTR_4g099320 | 24.740 | 384 | 276 | 3 | 212 | 595 | 4 | 374 | 4.15e-39 | 149 |
| MS.gene36567.t1 | MTR_7g085630 | 27.078 | 373 | 259 | 5 | 224 | 596 | 97 | 456 | 6.90e-39 | 150 |
| MS.gene36567.t1 | MTR_6g029460 | 28.522 | 291 | 198 | 3 | 224 | 514 | 16 | 296 | 9.76e-31 | 122 |
| MS.gene36567.t1 | MTR_6g029460 | 25.839 | 298 | 211 | 3 | 299 | 596 | 2 | 289 | 2.00e-30 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36567.t1 | AT1G51720 | 79.278 | 637 | 132 | 0 | 1 | 637 | 1 | 637 | 0.0 | 1054 |
| MS.gene36567.t1 | AT1G51720 | 79.278 | 637 | 132 | 0 | 1 | 637 | 1 | 637 | 0.0 | 1054 |
| MS.gene36567.t1 | AT1G51720 | 80.000 | 550 | 110 | 0 | 1 | 550 | 1 | 550 | 0.0 | 943 |
| MS.gene36567.t1 | AT1G51720 | 80.537 | 447 | 87 | 0 | 1 | 447 | 1 | 447 | 0.0 | 759 |
| MS.gene36567.t1 | AT5G07440 | 28.418 | 373 | 254 | 5 | 224 | 596 | 16 | 375 | 1.46e-41 | 156 |
| MS.gene36567.t1 | AT5G07440 | 28.418 | 373 | 254 | 5 | 224 | 596 | 16 | 375 | 1.46e-41 | 156 |
| MS.gene36567.t1 | AT5G18170 | 27.346 | 373 | 258 | 4 | 224 | 596 | 16 | 375 | 1.96e-40 | 153 |
| MS.gene36567.t1 | AT3G03910 | 26.810 | 373 | 260 | 3 | 224 | 596 | 16 | 375 | 2.14e-39 | 150 |
| MS.gene36567.t1 | AT3G03910 | 27.826 | 345 | 236 | 3 | 224 | 568 | 16 | 347 | 3.17e-38 | 145 |
| MS.gene36567.t1 | AT5G07440 | 29.452 | 292 | 196 | 4 | 224 | 515 | 16 | 297 | 1.89e-31 | 125 |
Find 157 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAAGGCTGCAACTGATTT+TGG | 0.156312 | 8.4:+75854553 | MS.gene36567:CDS |
| TGCTCTGTCTGCAGGGAATT+TGG | 0.169315 | 8.4:+75847598 | MS.gene36567:CDS |
| GAAGAGATTGATTTAGAAAT+TGG | 0.192598 | 8.4:+75847322 | MS.gene36567:CDS |
| ATCAGATTCTAGGGGATATT+TGG | 0.211286 | 8.4:+75852733 | MS.gene36567:intron |
| GCTTTGTCTCCTTACAAATT+AGG | 0.215159 | 8.4:+75850443 | MS.gene36567:CDS |
| TAAAGCATTAATCAGATTCT+AGG | 0.253678 | 8.4:+75852723 | MS.gene36567:intron |
| CTGCTCAAAGCCAAGGAATT+TGG | 0.261198 | 8.4:-75849093 | None:intergenic |
| CCAGCAATGGCTGCTGGTGC+TGG | 0.263171 | 8.4:+75853238 | MS.gene36567:CDS |
| TCAATCTGATGCCATGAATT+TGG | 0.265423 | 8.4:+75853022 | MS.gene36567:CDS |
| TTCTTGAAGCGACACTAAAA+AGG | 0.266131 | 8.4:+75848728 | MS.gene36567:CDS |
| GATAAGCCTGTTTATGTAAA+AGG | 0.274142 | 8.4:+75847760 | MS.gene36567:CDS |
| GCTCTTCCCATTTCAGTATC+AGG | 0.282241 | 8.4:+75852517 | MS.gene36567:CDS |
| TCACAGGGCCAAGAATATTT+TGG | 0.282585 | 8.4:+75851751 | MS.gene36567:CDS |
| ATAAAGAACTCAAAGGATTA+AGG | 0.294116 | 8.4:+75852149 | MS.gene36567:CDS |
| AGGAGACAAAGCATTCTTTA+AGG | 0.296981 | 8.4:-75850432 | None:intergenic |
| CGTATTACCTGATACTGAAA+TGG | 0.300882 | 8.4:-75852524 | None:intergenic |
| CCAGCACCAGCAGCCATTGC+TGG | 0.309675 | 8.4:-75853238 | None:intergenic |
| GCCATGAATTTGGTTAATTC+AGG | 0.314256 | 8.4:+75853032 | MS.gene36567:CDS |
| GGGGTGAGACACACGTTAAC+CGG | 0.316409 | 8.4:+75848988 | MS.gene36567:CDS |
| GGACTTTGAATCTAAATTAC+AGG | 0.316783 | 8.4:+75854197 | MS.gene36567:CDS |
| AAACATCGAAGAAATCCTTA+TGG | 0.334740 | 8.4:+75847625 | MS.gene36567:CDS |
| CAGACAGAGCAGAAAATTCT+TGG | 0.352843 | 8.4:-75847586 | None:intergenic |
| ACAGGTGAAAAGGAAGAAAA+AGG | 0.355624 | 8.4:+75847492 | MS.gene36567:CDS |
| ACTAATCGGTGCACCGTTGC+GGG | 0.357035 | 8.4:+75847381 | MS.gene36567:CDS |
| GAGTTCCATGGGTGGATGAT+AGG | 0.364667 | 8.4:+75848967 | MS.gene36567:CDS |
| GACTTATCAAAGAGCTATAA+AGG | 0.368168 | 8.4:+75854537 | MS.gene36567:CDS |
| GGATATTTGGTTGATGAAGA+TGG | 0.368744 | 8.4:+75852746 | MS.gene36567:CDS |
| ACCTGAATTAACCAAATTCA+TGG | 0.371127 | 8.4:-75853033 | None:intergenic |
| GAGCCGGACCAAAATATTCT+TGG | 0.373663 | 8.4:-75851759 | None:intergenic |
| TCATGAGGTTGAATTCATTC+AGG | 0.376731 | 8.4:+75848756 | MS.gene36567:CDS |
| TTTGGTAACACAACACTAAT+CGG | 0.386652 | 8.4:+75847367 | MS.gene36567:CDS |
| TTTCTGCAGGGAACTTTCAC+AGG | 0.391804 | 8.4:+75851735 | MS.gene36567:intron |
| GTTGTTATATGTCAGGGCTT+TGG | 0.392307 | 8.4:+75854928 | MS.gene36567:intron |
| GGAGAAGATGATCCTTCATT+TGG | 0.396097 | 8.4:+75847349 | MS.gene36567:CDS |
| GTTGCTCCAGCAATGGCTGC+TGG | 0.397576 | 8.4:+75853232 | MS.gene36567:CDS |
| GATATTTGGTTGATGAAGAT+GGG | 0.402651 | 8.4:+75852747 | MS.gene36567:CDS |
| GTACTTTCAGTTACCTTGTC+AGG | 0.403064 | 8.4:-75850644 | None:intergenic |
| CACTTGGTTGTGAGGGAGAT+TGG | 0.408537 | 8.4:+75847298 | MS.gene36567:CDS |
| CGACCCGAAGCTACTGGTTA+TGG | 0.409092 | 8.4:+75851789 | MS.gene36567:CDS |
| TAACATCATGGAGCGATTGC+TGG | 0.411793 | 8.4:+75848920 | MS.gene36567:CDS |
| TAATAGTTTGCTTCATAAAG+AGG | 0.415011 | 8.4:+75847696 | MS.gene36567:CDS |
| TTAAGCATTACCAAATTCCT+TGG | 0.426681 | 8.4:+75849083 | MS.gene36567:CDS |
| CGACTGCCTTCATTCCCATA+AGG | 0.429268 | 8.4:-75847640 | None:intergenic |
| AGTAGCTTCGGGTCGAAGAC+TGG | 0.431595 | 8.4:-75851781 | None:intergenic |
| GCAATGGCTGCTGGTGCTGG+AGG | 0.432301 | 8.4:+75853241 | MS.gene36567:CDS |
| AGTTCCATGGGTGGATGATA+GGG | 0.434799 | 8.4:+75848968 | MS.gene36567:CDS |
| TTAGAGAAGCTAATTGCATA+TGG | 0.436088 | 8.4:+75852493 | MS.gene36567:CDS |
| GGTACAATTTAACCAGTCAA+TGG | 0.436257 | 8.4:+75849019 | MS.gene36567:CDS |
| CCTTGCATGTAGGTTGTGGC+TGG | 0.440511 | 8.4:+75854126 | MS.gene36567:intron |
| AGATCGCACCTTTCTGTCCA+TGG | 0.441320 | 8.4:-75852966 | None:intergenic |
| TATGTCAGGGCTTTGGTACA+TGG | 0.442170 | 8.4:+75854935 | MS.gene36567:intron |
| AAAGCATTAATCAGATTCTA+GGG | 0.444267 | 8.4:+75852724 | MS.gene36567:intron |
| TGAATTCATTCAGGCTGTCC+AGG | 0.444923 | 8.4:+75848765 | MS.gene36567:CDS |
| CAATGGCTGCTGGTGCTGGA+GGG | 0.445162 | 8.4:+75853242 | MS.gene36567:CDS |
| TTTCAGTTATGTTAACATCA+TGG | 0.445458 | 8.4:+75848908 | MS.gene36567:intron |
| GGCGTTGGTACTCGCGAGAT+GGG | 0.447541 | 8.4:+75850767 | MS.gene36567:CDS |
| AATGGCTGCTGGTGCTGGAG+GGG | 0.447659 | 8.4:+75853243 | MS.gene36567:CDS |
| CTCAGAACCAACAGGTGAAA+AGG | 0.449596 | 8.4:+75847482 | MS.gene36567:CDS |
| TTGAACTGCGTCAGTAGTAC+AGG | 0.450654 | 8.4:-75853185 | None:intergenic |
| AACTATTATTATGTTCTTCG+AGG | 0.452851 | 8.4:-75847681 | None:intergenic |
| ATGAGTGCAGTTTGATGAAC+TGG | 0.455477 | 8.4:+75854166 | MS.gene36567:CDS |
| AACATCGAAGAAATCCTTAT+GGG | 0.456133 | 8.4:+75847626 | MS.gene36567:CDS |
| CAGTCCATAACCAGTAGCTT+CGG | 0.462128 | 8.4:-75851793 | None:intergenic |
| GGACCTTCCGTCAGAGGAGA+TGG | 0.462416 | 8.4:+75850745 | MS.gene36567:intron |
| TAAAAGATGGAGAGAGGAAT+GGG | 0.464772 | 8.4:+75847519 | MS.gene36567:CDS |
| CTCTACATGGACCCATTGAC+TGG | 0.465205 | 8.4:-75849031 | None:intergenic |
| TCATGTCAGCTAGCATGAGC+TGG | 0.469008 | 8.4:-75852126 | None:intergenic |
| CAAATTCCTTGGCTTTGAGC+AGG | 0.474838 | 8.4:+75849094 | MS.gene36567:CDS |
| GGTTGTCGTATACTAATAGA+AGG | 0.482254 | 8.4:+75853053 | MS.gene36567:CDS |
| AATGGGCAGACACTTACAAA+TGG | 0.483770 | 8.4:+75847536 | MS.gene36567:CDS |
| CAAGAGCTTGAACTACCTCC+TGG | 0.486357 | 8.4:-75848783 | None:intergenic |
| AGATGTGTAGTGAGTGGTTC+TGG | 0.486916 | 8.4:+75852451 | MS.gene36567:intron |
| AGATATGTCTCAGAACCAAC+AGG | 0.493372 | 8.4:+75847474 | MS.gene36567:CDS |
| CACTAATCGGTGCACCGTTG+CGG | 0.495422 | 8.4:+75847380 | MS.gene36567:CDS |
| AGTGTTGTGTTACCAAATGA+AGG | 0.496093 | 8.4:-75847361 | None:intergenic |
| GGGTGAGACACACGTTAACC+GGG | 0.499110 | 8.4:+75848989 | MS.gene36567:CDS |
| AGTCTTCGACCCGAAGCTAC+TGG | 0.500610 | 8.4:+75851783 | MS.gene36567:CDS |
| AGAAATCCTTATGGGAATGA+AGG | 0.503780 | 8.4:+75847634 | MS.gene36567:CDS |
| AAACGAATGCCACCTCTACA+TGG | 0.505421 | 8.4:-75849044 | None:intergenic |
| AAGCTCAGCATAGAAGTTTG+CGG | 0.507170 | 8.4:+75852807 | MS.gene36567:CDS |
| GGGCGTTGGTACTCGCGAGA+TGG | 0.507748 | 8.4:+75850766 | MS.gene36567:CDS |
| GTATTACCTGATACTGAAAT+GGG | 0.508270 | 8.4:-75852523 | None:intergenic |
| GCTGCACCTCCTAATTTGTA+AGG | 0.515123 | 8.4:-75850452 | None:intergenic |
| GCTCAAGCCATGACTGATCA+AGG | 0.517213 | 8.4:+75854986 | MS.gene36567:CDS |
| GGCTTGAGCAATAGTTAGAA+AGG | 0.521355 | 8.4:-75854972 | None:intergenic |
| CAAGCTCTTGAGAGAGTCAT+CGG | 0.522020 | 8.4:+75848796 | MS.gene36567:CDS |
| TACAAATTAGGAGGTGCAGC+TGG | 0.523027 | 8.4:+75850455 | MS.gene36567:CDS |
| CCGTCAGAGGAGATGGGCGT+TGG | 0.525355 | 8.4:+75850752 | MS.gene36567:CDS |
| GTACAATTTAACCAGTCAAT+GGG | 0.525972 | 8.4:+75849020 | MS.gene36567:CDS |
| GGACAGTATAGACGTCTAGT+TGG | 0.527995 | 8.4:+75850800 | MS.gene36567:CDS |
| ACATCTCACACATGAAACTC+TGG | 0.532354 | 8.4:-75850607 | None:intergenic |
| TGTTCTTGTTGCTCCAGCAA+TGG | 0.535504 | 8.4:+75853225 | MS.gene36567:CDS |
| TTGTCTCCTTACAAATTAGG+AGG | 0.539458 | 8.4:+75850446 | MS.gene36567:CDS |
| ATGGGCAGACACTTACAAAT+GGG | 0.541305 | 8.4:+75847537 | MS.gene36567:CDS |
| GCAAGCACAAAGGCATCACT+TGG | 0.542952 | 8.4:+75847282 | MS.gene36567:CDS |
| TTCGGGTCGAAGACTGGAGC+CGG | 0.545915 | 8.4:-75851775 | None:intergenic |
| ACTATTATTATGTTCTTCGA+GGG | 0.547023 | 8.4:-75847680 | None:intergenic |
| AATTTAGATTCAAAGTCCTC+CGG | 0.549512 | 8.4:-75854192 | None:intergenic |
| AAGCAAAACCATGGACAGAA+AGG | 0.550979 | 8.4:+75852958 | MS.gene36567:CDS |
| GGTTGTTAAAAGATGGAGAG+AGG | 0.553521 | 8.4:+75847513 | MS.gene36567:CDS |
| TTCATCCCTCCTCCAATGGT+TGG | 0.555575 | 8.4:-75847229 | None:intergenic |
| TTGCTGCCAACCATTGGAGG+AGG | 0.555674 | 8.4:+75847223 | MS.gene36567:CDS |
| TACACAGCCTTGATCAGTCA+TGG | 0.556808 | 8.4:-75854993 | None:intergenic |
| ATTGATTTAGAAATTGGACC+TGG | 0.560041 | 8.4:+75847328 | MS.gene36567:CDS |
| ATGTTGCTGCCAACCATTGG+AGG | 0.561385 | 8.4:+75847220 | MS.gene36567:CDS |
| TTAAAAGATGGAGAGAGGAA+TGG | 0.567654 | 8.4:+75847518 | MS.gene36567:CDS |
| AGCCTCCAAAGATAAAATCA+TGG | 0.570668 | 8.4:+75847735 | MS.gene36567:CDS |
| CAGTTTGATGAACTGGTCAC+CGG | 0.570708 | 8.4:+75854173 | MS.gene36567:CDS |
| GTAATGCTTAAATTCATCGA+CGG | 0.572109 | 8.4:-75849071 | None:intergenic |
| AAAGGCATCACTTGGTTGTG+AGG | 0.572466 | 8.4:+75847290 | MS.gene36567:CDS |
| CGCCCATCTCCTCTGACGGA+AGG | 0.572515 | 8.4:-75850748 | None:intergenic |
| TGAATGTTGCTGCCAACCAT+TGG | 0.574459 | 8.4:+75847217 | None:intergenic |
| GCATGGTGAGAGCAAGCAGA+TGG | 0.575621 | 8.4:+75847420 | MS.gene36567:CDS |
| AATGAAGGATCATCTTCTCC+AGG | 0.576398 | 8.4:-75847346 | None:intergenic |
| AGGAGGGATGAATTCTGCAT+TGG | 0.577230 | 8.4:+75847240 | MS.gene36567:CDS |
| AAAGGGCAAAAGTGATAATG+AGG | 0.578064 | 8.4:+75850496 | MS.gene36567:CDS |
| CTTATGTCGATGTGAAAGAC+GGG | 0.580512 | 8.4:+75847560 | MS.gene36567:CDS |
| CATGTCAGCTAGCATGAGCT+GGG | 0.581909 | 8.4:-75852125 | None:intergenic |
| CGAAGCTACTGGTTATGGAC+TGG | 0.582965 | 8.4:+75851794 | MS.gene36567:CDS |
| GACCTTCCGTCAGAGGAGAT+GGG | 0.585077 | 8.4:+75850746 | MS.gene36567:CDS |
| ATAATATTTGGACCGAGCAT+AGG | 0.586813 | 8.4:-75852931 | None:intergenic |
| TAAATTGTACCCGAAACCCC+CGG | 0.588382 | 8.4:-75849007 | None:intergenic |
| AAGCTCTTGAGAGAGTCATC+GGG | 0.590180 | 8.4:+75848797 | MS.gene36567:CDS |
| AAGGCATCACTTGGTTGTGA+GGG | 0.595050 | 8.4:+75847291 | MS.gene36567:CDS |
| GTAATACCTGCTCAAAGCCA+AGG | 0.595738 | 8.4:-75849100 | None:intergenic |
| AGAATTCATCCCTCCTCCAA+TGG | 0.597721 | 8.4:-75847233 | None:intergenic |
| GCTTATGTCGATGTGAAAGA+CGG | 0.597982 | 8.4:+75847559 | MS.gene36567:CDS |
| GTTCCATGGGTGGATGATAG+GGG | 0.598700 | 8.4:+75848969 | MS.gene36567:CDS |
| CAGTCAATGGGTCCATGTAG+AGG | 0.599685 | 8.4:+75849032 | MS.gene36567:CDS |
| AGTCCATAACCAGTAGCTTC+GGG | 0.601782 | 8.4:-75851792 | None:intergenic |
| GAATCTTCTGCAGAAGAGCA+TGG | 0.611081 | 8.4:+75847403 | MS.gene36567:CDS |
| CAGTTACCTTGTCAGGACCA+AGG | 0.617519 | 8.4:-75850637 | None:intergenic |
| TCTGCAGAAGATTCCCGCAA+CGG | 0.624839 | 8.4:-75847394 | None:intergenic |
| ATATTAGGACCTTCCGTCAG+AGG | 0.628155 | 8.4:+75850739 | MS.gene36567:intron |
| CCAACGCCCATCTCCTCTGA+CGG | 0.628777 | 8.4:-75850752 | None:intergenic |
| TGAATGAATTCAACCTCATG+AGG | 0.631053 | 8.4:-75848754 | None:intergenic |
| TCATTACCTTGGTCCTGACA+AGG | 0.631247 | 8.4:+75850631 | MS.gene36567:CDS |
| TGAGAGCAAGCAGATGGCGA+CGG | 0.631636 | 8.4:+75847426 | MS.gene36567:CDS |
| ATTATGATGAAGCAAAACCA+TGG | 0.633955 | 8.4:+75852949 | MS.gene36567:CDS |
| TGTGAGATGTATCATTACCT+TGG | 0.636503 | 8.4:+75850620 | MS.gene36567:CDS |
| TTCTGCAGGGAACTTTCACA+GGG | 0.636517 | 8.4:+75851736 | MS.gene36567:intron |
| AAATTAGGAGGTGCAGCTGG+TGG | 0.637075 | 8.4:+75850458 | MS.gene36567:CDS |
| CTGACGCAGTTCAAGTTCTG+AGG | 0.637492 | 8.4:+75853194 | MS.gene36567:CDS |
| TCAATGGGTCCATGTAGAGG+TGG | 0.644762 | 8.4:+75849035 | MS.gene36567:CDS |
| ACTATTCAAAGACCTATGCT+CGG | 0.650401 | 8.4:+75852919 | MS.gene36567:CDS |
| TCACCCCTATCATCCACCCA+TGG | 0.658377 | 8.4:-75848972 | None:intergenic |
| TGCTGCCAACCATTGGAGGA+GGG | 0.661328 | 8.4:+75847224 | MS.gene36567:CDS |
| GTGAGACACACGTTAACCGG+GGG | 0.664509 | 8.4:+75848991 | MS.gene36567:CDS |
| GCGTTGGTACTCGCGAGATG+GGG | 0.667931 | 8.4:+75850768 | MS.gene36567:CDS |
| TTTGATGAACTGGTCACCGG+AGG | 0.674578 | 8.4:+75854176 | MS.gene36567:CDS |
| GACATGAATAAAGAACTCAA+AGG | 0.675264 | 8.4:+75852142 | MS.gene36567:CDS |
| GGTGAGACACACGTTAACCG+GGG | 0.676907 | 8.4:+75848990 | MS.gene36567:CDS |
| TGAACTGCGTCAGTAGTACA+GGG | 0.688964 | 8.4:-75853184 | None:intergenic |
| TCCTGCAGATGTGTAGTGAG+TGG | 0.690117 | 8.4:+75852445 | MS.gene36567:intron |
| ATTCATTCAGGCTGTCCAGG+AGG | 0.691635 | 8.4:+75848768 | MS.gene36567:CDS |
| ATTTGATTCAGCAAGCACAA+AGG | 0.692477 | 8.4:+75847272 | MS.gene36567:CDS |
| AAGCATTAATCAGATTCTAG+GGG | 0.694097 | 8.4:+75852725 | MS.gene36567:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 75847220 | 75855018 | 75847220 | ID=MS.gene36567 |
| chr8.4 | mRNA | 75847220 | 75855018 | 75847220 | ID=MS.gene36567.t1;Parent=MS.gene36567 |
| chr8.4 | exon | 75847220 | 75847781 | 75847220 | ID=MS.gene36567.t1.exon1;Parent=MS.gene36567.t1 |
| chr8.4 | CDS | 75847220 | 75847781 | 75847220 | ID=cds.MS.gene36567.t1;Parent=MS.gene36567.t1 |
| chr8.4 | exon | 75848701 | 75848830 | 75848701 | ID=MS.gene36567.t1.exon2;Parent=MS.gene36567.t1 |
| chr8.4 | CDS | 75848701 | 75848830 | 75848701 | ID=cds.MS.gene36567.t1;Parent=MS.gene36567.t1 |
| chr8.4 | exon | 75848914 | 75849115 | 75848914 | ID=MS.gene36567.t1.exon3;Parent=MS.gene36567.t1 |
| chr8.4 | CDS | 75848914 | 75849115 | 75848914 | ID=cds.MS.gene36567.t1;Parent=MS.gene36567.t1 |
| chr8.4 | exon | 75850431 | 75850517 | 75850431 | ID=MS.gene36567.t1.exon4;Parent=MS.gene36567.t1 |
| chr8.4 | CDS | 75850431 | 75850517 | 75850431 | ID=cds.MS.gene36567.t1;Parent=MS.gene36567.t1 |
| chr8.4 | exon | 75850593 | 75850652 | 75850593 | ID=MS.gene36567.t1.exon5;Parent=MS.gene36567.t1 |
| chr8.4 | CDS | 75850593 | 75850652 | 75850593 | ID=cds.MS.gene36567.t1;Parent=MS.gene36567.t1 |
| chr8.4 | exon | 75850746 | 75850832 | 75850746 | ID=MS.gene36567.t1.exon6;Parent=MS.gene36567.t1 |
| chr8.4 | CDS | 75850746 | 75850832 | 75850746 | ID=cds.MS.gene36567.t1;Parent=MS.gene36567.t1 |
| chr8.4 | exon | 75851744 | 75851815 | 75851744 | ID=MS.gene36567.t1.exon7;Parent=MS.gene36567.t1 |
| chr8.4 | CDS | 75851744 | 75851815 | 75851744 | ID=cds.MS.gene36567.t1;Parent=MS.gene36567.t1 |
| chr8.4 | exon | 75852115 | 75852170 | 75852115 | ID=MS.gene36567.t1.exon8;Parent=MS.gene36567.t1 |
| chr8.4 | CDS | 75852115 | 75852170 | 75852115 | ID=cds.MS.gene36567.t1;Parent=MS.gene36567.t1 |
| chr8.4 | exon | 75852453 | 75852538 | 75852453 | ID=MS.gene36567.t1.exon9;Parent=MS.gene36567.t1 |
| chr8.4 | CDS | 75852453 | 75852538 | 75852453 | ID=cds.MS.gene36567.t1;Parent=MS.gene36567.t1 |
| chr8.4 | exon | 75852738 | 75852828 | 75852738 | ID=MS.gene36567.t1.exon10;Parent=MS.gene36567.t1 |
| chr8.4 | CDS | 75852738 | 75852828 | 75852738 | ID=cds.MS.gene36567.t1;Parent=MS.gene36567.t1 |
| chr8.4 | exon | 75852917 | 75853074 | 75852917 | ID=MS.gene36567.t1.exon11;Parent=MS.gene36567.t1 |
| chr8.4 | CDS | 75852917 | 75853074 | 75852917 | ID=cds.MS.gene36567.t1;Parent=MS.gene36567.t1 |
| chr8.4 | exon | 75853173 | 75853264 | 75853173 | ID=MS.gene36567.t1.exon12;Parent=MS.gene36567.t1 |
| chr8.4 | CDS | 75853173 | 75853264 | 75853173 | ID=cds.MS.gene36567.t1;Parent=MS.gene36567.t1 |
| chr8.4 | exon | 75854138 | 75854218 | 75854138 | ID=MS.gene36567.t1.exon13;Parent=MS.gene36567.t1 |
| chr8.4 | CDS | 75854138 | 75854218 | 75854138 | ID=cds.MS.gene36567.t1;Parent=MS.gene36567.t1 |
| chr8.4 | exon | 75854523 | 75854596 | 75854523 | ID=MS.gene36567.t1.exon14;Parent=MS.gene36567.t1 |
| chr8.4 | CDS | 75854523 | 75854596 | 75854523 | ID=cds.MS.gene36567.t1;Parent=MS.gene36567.t1 |
| chr8.4 | exon | 75854943 | 75855018 | 75854943 | ID=MS.gene36567.t1.exon15;Parent=MS.gene36567.t1 |
| chr8.4 | CDS | 75854943 | 75855018 | 75854943 | ID=cds.MS.gene36567.t1;Parent=MS.gene36567.t1 |
| Gene Sequence |
| Protein sequence |
