AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene37214


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37214.t1 MTR_6g016875 86.598 388 13 3 1 349 1 388 0.0 658
MS.gene37214.t1 MTR_6g016880 46.154 403 159 10 1 349 1 399 2.47e-125 367
MS.gene37214.t1 MTR_7g019120 45.455 407 157 8 1 349 1 400 3.20e-120 354
MS.gene37214.t1 MTR_2g016060 43.373 332 143 10 61 349 51 380 8.31e-93 283
MS.gene37214.t1 MTR_6g007777 39.550 311 153 6 41 327 100 399 1.64e-71 230
MS.gene37214.t1 MTR_8g099300 38.754 289 152 5 59 326 69 353 1.50e-68 221
MS.gene37214.t1 MTR_8g104970 36.304 303 158 6 48 324 104 397 3.26e-66 216
MS.gene37214.t1 MTR_8g027900 37.425 334 158 9 61 349 208 535 3.54e-65 216
MS.gene37214.t1 MTR_5g035090 34.417 369 190 11 1 326 1 360 3.75e-65 213
MS.gene37214.t1 MTR_7g033230 36.986 292 149 6 62 327 262 544 1.81e-63 213
MS.gene37214.t1 MTR_3g109840 36.424 302 156 6 50 326 59 349 4.92e-63 207
MS.gene37214.t1 MTR_7g033230 36.986 292 149 6 62 327 332 614 7.87e-63 212
MS.gene37214.t1 MTR_5g035150 36.364 286 153 4 62 324 83 362 6.85e-62 204
MS.gene37214.t1 MTR_5g035070 38.832 291 149 4 57 324 80 364 1.17e-59 198
MS.gene37214.t1 MTR_6g061710 33.333 306 169 6 44 326 152 445 1.23e-58 197
MS.gene37214.t1 MTR_5g035080 33.939 330 173 9 31 327 37 354 2.51e-58 194
MS.gene37214.t1 MTR_1g076690 33.333 303 168 7 51 326 206 501 3.12e-55 190
MS.gene37214.t1 MTR_7g019140 47.701 174 68 4 1 155 1 170 3.28e-49 163
MS.gene37214.t1 MTR_7g094750 34.661 251 139 7 64 292 91 338 2.35e-42 153
MS.gene37214.t1 MTR_2g022560 32.472 271 144 9 50 292 85 344 1.10e-38 143
MS.gene37214.t1 MTR_8g069790 30.114 352 197 13 36 349 156 496 4.36e-38 142
MS.gene37214.t1 MTR_5g033800 32.184 261 147 8 64 300 145 399 1.80e-37 140
MS.gene37214.t1 MTR_7g093450 33.962 265 142 11 64 302 248 505 2.35e-37 141
MS.gene37214.t1 MTR_7g094750 33.195 241 136 7 64 282 91 328 3.03e-36 134
MS.gene37214.t1 MTR_4g126950 30.657 274 159 8 62 313 107 371 3.30e-36 136
MS.gene37214.t1 MTR_0136s0010 33.858 254 136 11 64 292 170 416 8.83e-36 136
MS.gene37214.t1 MTR_7g109550 30.000 310 170 11 64 336 137 436 2.00e-35 134
MS.gene37214.t1 MTR_5g059400 28.767 292 170 7 45 306 153 436 2.47e-34 132
MS.gene37214.t1 MTR_1g116130 28.767 292 170 7 45 306 153 436 2.47e-34 132
MS.gene37214.t1 MTR_8g093530 32.000 250 145 7 56 283 82 328 1.03e-33 129
MS.gene37214.t1 MTR_7g019130 44.800 125 49 1 184 288 1 125 1.18e-33 122
MS.gene37214.t1 MTR_3g464570 32.963 270 129 11 54 296 37 281 4.26e-33 126
MS.gene37214.t1 MTR_4g014440 30.268 261 155 7 64 302 62 317 1.42e-32 125
MS.gene37214.t1 MTR_4g121560 29.206 315 185 10 12 292 52 362 1.51e-32 126
MS.gene37214.t1 MTR_5g033800 35.359 181 105 5 64 238 145 319 1.95e-32 125
MS.gene37214.t1 MTR_5g071350 28.710 310 145 10 51 316 48 325 4.07e-32 124
MS.gene37214.t1 MTR_7g070060 27.815 302 188 10 23 301 25 319 1.55e-31 123
MS.gene37214.t1 MTR_3g021060 29.021 286 165 10 60 319 40 313 5.19e-31 120
MS.gene37214.t1 MTR_5g035120 49.038 104 53 0 58 161 69 172 5.65e-31 115
MS.gene37214.t1 MTR_1g058380 29.615 260 154 7 62 296 53 308 6.82e-31 121
MS.gene37214.t1 MTR_7g070060 27.526 287 181 8 23 289 25 304 1.67e-30 118
MS.gene37214.t1 MTR_4g125060 30.182 275 159 8 56 299 124 396 2.83e-30 120
MS.gene37214.t1 MTR_3g021090 25.949 316 198 9 58 349 25 328 3.39e-30 119
MS.gene37214.t1 MTR_5g083260 31.298 262 143 10 57 292 77 327 3.54e-30 119
MS.gene37214.t1 MTR_4g125060 30.182 275 159 8 56 299 163 435 3.74e-30 120
MS.gene37214.t1 MTR_4g125060 29.818 275 160 8 56 299 192 464 4.21e-30 120
MS.gene37214.t1 MTR_6g016240 30.530 321 178 11 23 303 22 337 3.36e-29 117
MS.gene37214.t1 MTR_3g070900 29.921 254 152 6 62 294 104 352 4.03e-29 117
MS.gene37214.t1 MTR_8g463790 27.888 251 153 10 62 292 69 311 5.24e-29 116
MS.gene37214.t1 MTR_3g035830 25.316 316 200 9 58 349 25 328 7.00e-29 114
MS.gene37214.t1 MTR_4g014430 29.348 276 171 9 56 312 100 370 1.12e-28 115
MS.gene37214.t1 MTR_4g087730 29.730 296 153 11 20 288 7 274 2.03e-28 114
MS.gene37214.t1 MTR_8g093870 27.759 299 170 9 62 322 131 421 1.01e-27 113
MS.gene37214.t1 MTR_4g088030 29.119 261 138 9 54 288 23 262 1.73e-27 110
MS.gene37214.t1 MTR_2g091175 29.134 254 149 9 64 298 50 291 2.97e-27 110
MS.gene37214.t1 MTR_3g071650 29.762 252 147 7 64 292 89 333 3.31e-27 111
MS.gene37214.t1 MTR_2g015720 29.259 270 142 10 48 291 27 273 4.99e-26 107
MS.gene37214.t1 MTR_4g016940 32.075 265 143 13 64 301 86 340 5.16e-26 108
MS.gene37214.t1 MTR_3g090120 28.879 232 137 7 35 244 90 315 2.11e-25 106
MS.gene37214.t1 MTR_0929s0020 46.512 86 46 0 184 269 1 86 4.02e-25 97.4
MS.gene37214.t1 MTR_3g049330 27.385 325 177 13 54 338 18 323 1.93e-24 102
MS.gene37214.t1 MTR_0929s0010 41.406 128 58 5 1 112 1 127 1.96e-24 97.1
MS.gene37214.t1 MTR_2g073510 29.617 287 162 9 30 296 7 273 2.23e-24 102
MS.gene37214.t1 MTR_1g111010 35.294 187 102 8 59 240 27 199 5.57e-24 101
MS.gene37214.t1 MTR_1g050448 30.055 183 117 4 56 238 45 216 6.51e-24 101
MS.gene37214.t1 MTR_1g112210 27.686 242 147 7 62 286 57 287 1.07e-23 100
MS.gene37214.t1 MTR_5g035140 28.218 202 110 6 151 326 7 199 1.90e-23 98.2
MS.gene37214.t1 MTR_1g112210 28.099 242 133 8 62 286 57 274 3.11e-23 99.4
MS.gene37214.t1 MTR_4g079700 29.555 247 135 8 64 288 47 276 3.76e-23 99.4
MS.gene37214.t1 MTR_7g068920 28.777 278 145 12 60 302 76 335 4.36e-23 99.8
MS.gene37214.t1 MTR_5g082880 30.000 180 121 4 62 239 163 339 6.30e-23 100
MS.gene37214.t1 MTR_5g034810 33.516 182 107 6 57 238 28 195 4.93e-22 95.9
MS.gene37214.t1 MTR_4g092830 26.592 267 166 9 64 305 48 309 5.43e-21 93.6
MS.gene37214.t1 MTR_2g073500 30.939 181 109 6 64 238 29 199 1.73e-18 85.5
MS.gene37214.t1 MTR_7g070060 25.481 208 128 7 116 301 15 217 2.80e-12 67.0
MS.gene37214.t1 MTR_2g022580 32.773 119 70 5 124 236 2 116 4.39e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37214.t1 AT5G15900 42.005 369 163 10 27 349 26 389 5.60e-101 305
MS.gene37214.t1 AT5G15900 42.005 369 163 10 27 349 45 408 8.26e-101 305
MS.gene37214.t1 AT5G15890 42.197 346 152 8 43 349 166 502 3.98e-96 295
MS.gene37214.t1 AT3G02440 42.638 326 143 5 64 349 127 448 6.21e-95 291
MS.gene37214.t1 AT3G02440 42.638 326 143 5 64 349 135 456 6.21e-95 291
MS.gene37214.t1 AT1G01430 39.241 316 160 8 5 300 47 350 4.55e-74 236
MS.gene37214.t1 AT4G01080 36.074 377 188 9 16 349 44 410 1.57e-72 232
MS.gene37214.t1 AT3G28150 35.780 327 163 6 64 349 70 390 1.81e-71 228
MS.gene37214.t1 AT4G23790 38.966 290 150 6 60 326 75 360 2.01e-70 226
MS.gene37214.t1 AT1G70230 39.858 281 142 6 64 326 79 350 1.16e-67 218
MS.gene37214.t1 AT4G11090 34.821 336 168 10 60 349 75 405 2.62e-65 213
MS.gene37214.t1 AT5G51640 32.526 289 165 5 64 329 138 419 4.72e-54 185
MS.gene37214.t1 AT4G25360 31.818 308 176 4 38 323 149 444 2.32e-53 184
MS.gene37214.t1 AT4G25360 31.818 308 176 4 38 323 149 444 2.32e-53 184
MS.gene37214.t1 AT5G19160 34.241 257 134 6 63 292 98 346 7.40e-41 149
MS.gene37214.t1 AT3G06080 34.661 251 141 6 63 292 102 350 6.43e-40 147
MS.gene37214.t1 AT1G60790 31.698 265 155 6 51 292 177 438 2.62e-39 146
MS.gene37214.t1 AT5G20590 30.565 301 173 12 48 325 126 413 6.87e-38 141
MS.gene37214.t1 AT3G12060 32.364 275 154 10 62 311 194 461 7.10e-38 142
MS.gene37214.t1 AT3G62390 29.618 314 184 10 56 336 128 437 2.69e-37 140
MS.gene37214.t1 AT5G19160 33.333 246 129 6 63 281 98 335 5.42e-36 134
MS.gene37214.t1 AT5G06700 32.841 271 148 10 49 292 238 501 3.03e-35 135
MS.gene37214.t1 AT3G06080 33.610 241 137 6 63 282 102 340 2.47e-34 129
MS.gene37214.t1 AT5G06230 32.014 278 154 10 45 292 2 274 1.79e-33 127
MS.gene37214.t1 AT5G49340 30.961 281 166 7 46 301 81 358 2.26e-33 129
MS.gene37214.t1 AT5G06230 32.014 278 154 10 45 292 43 315 3.13e-33 127
MS.gene37214.t1 AT5G20590 36.548 197 114 7 48 238 126 317 9.42e-33 125
MS.gene37214.t1 AT5G01620 30.091 329 186 12 60 349 106 429 2.32e-31 123
MS.gene37214.t1 AT5G01620 30.091 329 186 12 60 349 106 429 2.32e-31 123
MS.gene37214.t1 AT5G01620 30.091 329 186 12 60 349 114 437 2.70e-31 123
MS.gene37214.t1 AT3G11030 30.855 269 149 11 62 304 104 361 8.70e-31 121
MS.gene37214.t1 AT3G62390 29.963 267 152 9 48 283 112 374 9.42e-31 121
MS.gene37214.t1 AT2G14530 30.112 269 145 11 64 298 62 321 1.15e-30 120
MS.gene37214.t1 AT2G30010 28.620 297 172 10 64 330 99 385 1.67e-30 120
MS.gene37214.t1 AT2G30010 28.620 297 172 10 64 330 56 342 1.95e-30 120
MS.gene37214.t1 AT3G11570 33.083 266 149 10 76 317 95 355 4.53e-30 119
MS.gene37214.t1 AT2G40320 31.008 258 147 8 58 292 76 325 6.86e-30 119
MS.gene37214.t1 AT5G64470 30.072 276 162 10 56 305 47 317 1.34e-29 117
MS.gene37214.t1 AT2G38320 27.575 301 185 12 8 286 7 296 2.47e-29 117
MS.gene37214.t1 AT2G34070 25.786 318 183 11 55 336 56 356 2.66e-29 116
MS.gene37214.t1 AT5G64470 30.216 278 163 10 56 307 47 319 2.78e-29 116
MS.gene37214.t1 AT5G64470 29.927 274 161 10 56 303 47 315 3.46e-29 115
MS.gene37214.t1 AT5G64020 27.586 290 179 7 64 322 57 346 4.47e-29 116
MS.gene37214.t1 AT3G55990 30.165 242 145 5 64 286 140 376 6.02e-29 117
MS.gene37214.t1 AT5G64470 30.037 273 160 10 56 302 47 314 7.02e-29 114
MS.gene37214.t1 AT2G40160 28.517 263 152 9 64 298 77 331 1.00e-28 115
MS.gene37214.t1 AT2G40160 28.517 263 152 9 64 298 77 331 1.04e-28 115
MS.gene37214.t1 AT1G48880 32.685 257 139 9 64 296 115 361 1.66e-28 115
MS.gene37214.t1 AT2G42570 31.298 262 133 10 64 298 47 288 2.13e-28 114
MS.gene37214.t1 AT2G30900 26.176 340 202 11 30 336 13 336 2.47e-28 113
MS.gene37214.t1 AT5G06230 30.370 270 153 9 45 284 43 307 2.73e-28 112
MS.gene37214.t1 AT2G40150 27.083 288 173 8 64 324 71 348 4.34e-28 114
MS.gene37214.t1 AT1G29050 27.863 262 137 10 56 288 53 291 1.06e-27 112
MS.gene37214.t1 AT5G01360 27.211 294 175 10 64 324 36 323 1.44e-27 111
MS.gene37214.t1 AT5G01360 27.211 294 175 10 64 324 92 379 2.27e-27 112
MS.gene37214.t1 AT5G58600 32.961 179 102 6 64 238 66 230 3.38e-27 108
MS.gene37214.t1 AT1G73140 28.000 250 154 10 62 292 65 307 5.79e-27 110
MS.gene37214.t1 AT2G30900 30.332 211 131 5 30 239 13 208 6.64e-27 107
MS.gene37214.t1 AT2G40160 31.868 182 111 5 64 240 77 250 1.12e-26 108
MS.gene37214.t1 AT5G58600 33.520 179 101 7 64 238 66 230 1.89e-26 108
MS.gene37214.t1 AT3G14850 28.571 315 165 12 61 336 31 324 2.72e-24 102
MS.gene37214.t1 AT2G38320 29.224 219 129 8 88 286 1 213 3.24e-24 101
MS.gene37214.t1 AT2G31110 27.667 300 179 11 27 302 5 290 1.41e-23 100
MS.gene37214.t1 AT2G31110 30.876 217 131 7 27 238 5 207 1.04e-22 96.3
MS.gene37214.t1 AT5G20680 24.916 297 170 9 42 299 194 476 5.81e-22 97.4
MS.gene37214.t1 AT5G20680 24.916 297 170 9 42 299 194 476 5.81e-22 97.4
MS.gene37214.t1 AT5G20680 24.916 297 170 9 42 299 194 476 5.81e-22 97.4
MS.gene37214.t1 AT5G20680 24.916 297 170 9 42 299 194 476 5.81e-22 97.4
MS.gene37214.t1 AT5G20680 24.916 297 170 9 42 299 176 458 6.68e-22 97.1
MS.gene37214.t1 AT5G20680 24.916 297 170 9 42 299 100 382 6.72e-22 96.7
MS.gene37214.t1 AT3G54260 28.571 175 114 4 64 238 51 214 1.01e-20 92.4
MS.gene37214.t1 AT1G78710 45.455 99 50 3 58 155 26 121 5.34e-20 89.4
MS.gene37214.t1 AT1G78710 45.455 99 50 3 58 155 33 128 9.14e-20 89.7
MS.gene37214.t1 AT2G37720 25.654 191 130 3 60 240 139 327 1.64e-19 89.7

Find 0 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTTTCAAGATTTGTTA+AGG + 42366:2065-2084 MS.gene37214:intergenic 15.0%
!!! AAACAGTTTTCATAAATTTT+TGG - 42366:915-934 MS.gene37214:CDS 15.0%
!!! AACAGTTTTCATAAATTTTT+GGG - 42366:916-935 MS.gene37214:CDS 15.0%
!!! ACAAATCTTGAAAATTTTAA+AGG - 42366:2067-2086 MS.gene37214:CDS 15.0%
!!! GTATTTTTTTTTCTTTTTTC+AGG - 42366:1665-1684 MS.gene37214:intron 15.0%
!! AAAAAATACATAAGCATGTT+TGG + 42366:1654-1673 MS.gene37214:intergenic 20.0%
! AAATGATTAACTAAGAAGGA+TGG + 42366:1275-1294 MS.gene37214:intergenic 25.0%
! AACAACAAAACAGAAACAAA+AGG - 42366:541-560 MS.gene37214:CDS 25.0%
! AAGGAAGAAATGAACTTAAA+TGG - 42366:2181-2200 MS.gene37214:CDS 25.0%
! ACCATTATTGTTCTATGAAA+AGG - 42366:1944-1963 MS.gene37214:CDS 25.0%
! ATAACAATGTAACATGCAAA+TGG - 42366:614-633 MS.gene37214:CDS 25.0%
! ATTTAGTCTCAAATTTACTG+TGG - 42366:1516-1535 MS.gene37214:intron 25.0%
! CAAATGTCATATATTTCAGA+CGG - 42366:1724-1743 MS.gene37214:intron 25.0%
! CATGAAATTATATGTAGATG+AGG - 42366:1848-1867 MS.gene37214:intron 25.0%
! CATGTTACATTGTTATAGTA+AGG + 42366:610-629 MS.gene37214:intergenic 25.0%
! CCATTATTGTTCTATGAAAA+GGG - 42366:1945-1964 MS.gene37214:CDS 25.0%
! CTAAATTAACCCATCTAAAT+TGG + 42366:1042-1061 MS.gene37214:intergenic 25.0%
! TGTGAAATGATTAACTAAGA+AGG + 42366:1279-1298 MS.gene37214:intergenic 25.0%
!! AATTGAGTTGCATTAAACAA+CGG + 42366:727-746 MS.gene37214:intergenic 25.0%
!!! GTTTTCATAAATTTTTGGGT+TGG - 42366:920-939 MS.gene37214:CDS 25.0%
!!! GTTTTTTTTTTCAAAAGAGC+AGG - 42366:870-889 MS.gene37214:CDS 25.0%
!!! TTAAAGGTGTGACATTTTTT+AGG - 42366:2083-2102 MS.gene37214:CDS 25.0%
AAACCAAACATTCACTAAGA+TGG + 42366:1356-1375 MS.gene37214:intergenic 30.0%
AAACCAATGAGATTCTCAAT+GGG - 42366:386-405 MS.gene37214:CDS 30.0%
AATCCATCTTAGTGAATGTT+TGG - 42366:1350-1369 MS.gene37214:intron 30.0%
ATAGCATGTCCATAGTTATT+AGG + 42366:2338-2357 MS.gene37214:intergenic 30.0%
ATGAAAAAACCTTGATGTCA+CGG + 42366:1122-1141 MS.gene37214:intergenic 30.0%
CAAGTTAGAATCAATTCTAG+AGG + 42366:1462-1481 MS.gene37214:intergenic 30.0%
CTCACTATTATGGTACAAAA+TGG - 42366:2018-2037 MS.gene37214:CDS 30.0%
GATCATTACTTACTTGACTT+AGG + 42366:831-850 MS.gene37214:intergenic 30.0%
GTATTTATGAGAAACATCCT+CGG + 42366:1700-1719 MS.gene37214:intergenic 30.0%
TAATAACTATGGACATGCTA+TGG - 42366:2337-2356 MS.gene37214:CDS 30.0%
TAGCATGTCCATAGTTATTA+GGG + 42366:2337-2356 MS.gene37214:intergenic 30.0%
TATGAAAAGGGTAAACTTGT+TGG - 42366:1957-1976 MS.gene37214:CDS 30.0%
TATGGTACAAAATGGCATTT+AGG - 42366:2026-2045 MS.gene37214:CDS 30.0%
TATTTATGAGAAACATCCTC+GGG + 42366:1699-1718 MS.gene37214:intergenic 30.0%
TCTAACTTGAAGCTAGAATT+CGG - 42366:1473-1492 MS.gene37214:intron 30.0%
TTCATTTCTTCCTTGCTAAA+TGG + 42366:2175-2194 MS.gene37214:intergenic 30.0%
! CCCTTTTCATAGAACAATAA+TGG + 42366:1948-1967 MS.gene37214:intergenic 30.0%
! GGAAAGAAAATGGTTTTTGT+TGG - 42366:763-782 MS.gene37214:CDS 30.0%
! TGAATGTTTGGTTTCACATT+TGG - 42366:1362-1381 MS.gene37214:intron 30.0%
! TGAATTTAAAGTAGCACAAG+AGG - 42366:2237-2256 MS.gene37214:CDS 30.0%
! TGGTACAAGAAAAACACTTT+TGG + 42366:434-453 MS.gene37214:intergenic 30.0%
! TTTTTGTTGGAGATTCTGTT+GGG - 42366:776-795 MS.gene37214:CDS 30.0%
AAAACTGCATGAAGTTTGGT+AGG - 42366:650-669 MS.gene37214:CDS 35.0%
AAGAAGGATGGATACAATCA+AGG + 42366:1263-1282 MS.gene37214:intergenic 35.0%
AATTATGTTGTGAGACCTGA+TGG - 42366:2307-2326 MS.gene37214:CDS 35.0%
AATTGGATTCCTCATTCTGA+AGG - 42366:583-602 MS.gene37214:CDS 35.0%
ACAGATCTTGCTCACTATTA+TGG - 42366:2008-2027 MS.gene37214:CDS 35.0%
ACCAAGGGTGAAATTGTAAT+CGG + 42366:1760-1779 MS.gene37214:intergenic 35.0%
ACCATACTTTGTGAGATCAA+AGG - 42366:1791-1810 MS.gene37214:intron 35.0%
AGAAGGATGGATACAATCAA+GGG + 42366:1262-1281 MS.gene37214:intergenic 35.0%
AGGGAACAAGGATAAAAACA+AGG + 42366:1238-1257 MS.gene37214:intergenic 35.0%
ATGATGAGAAGAAGAGTGAA+TGG + 42366:454-473 MS.gene37214:intergenic 35.0%
ATTATCTAAGAATGCAACCG+TGG - 42366:1199-1218 MS.gene37214:intron 35.0%
CAAACCAATGAGATTCTCAA+TGG - 42366:385-404 MS.gene37214:CDS 35.0%
CATAAGCATGTTTGGTTATC+TGG + 42366:1646-1665 MS.gene37214:intergenic 35.0%
CATTACTTACTTGACTTAGG+AGG + 42366:828-847 MS.gene37214:intergenic 35.0%
GAACAAAACTGCATGAAGTT+TGG - 42366:646-665 MS.gene37214:CDS 35.0%
GGTTGCATTCTTAGATAATG+CGG + 42366:1198-1217 MS.gene37214:intergenic 35.0%
GTGTTTCTCATGAGAATAAG+AGG + 42366:481-500 MS.gene37214:intergenic 35.0%
TCAAAGGATGCTGACAAAAA+TGG - 42366:1807-1826 MS.gene37214:intron 35.0%
TCCTTTGATCTCACAAAGTA+TGG + 42366:1795-1814 MS.gene37214:intergenic 35.0%
TCTCCATTCTCAAAATGTGA+TGG + 42366:2118-2137 MS.gene37214:intergenic 35.0%
TGTTTGACAGAAGACATGTT+TGG + 42366:517-536 MS.gene37214:intergenic 35.0%
! AAAGGATGTGACATCTTTTC+TGG - 42366:559-578 MS.gene37214:CDS 35.0%
! ATGTTTGGTTTCACATTTGG+AGG - 42366:1365-1384 MS.gene37214:intron 35.0%
! GCTTGTTAGAGGAAAGAAAA+TGG - 42366:753-772 MS.gene37214:CDS 35.0%
! GGAGGAAAAATTGATTCTAG+AGG - 42366:1386-1405 MS.gene37214:intron 35.0%
! GGTTATCTGGTGTCAAAAAT+TGG + 42366:1633-1652 MS.gene37214:intergenic 35.0%
! GTTTTTGTTGGAGATTCTGT+TGG - 42366:775-794 MS.gene37214:CDS 35.0%
!! CAATTCTTAGAGCTTGTTAG+AGG - 42366:742-761 MS.gene37214:CDS 35.0%
!! CACATTTTGAGAATGGAGAT+TGG - 42366:2119-2138 MS.gene37214:CDS 35.0%
!! GTGACATCTTTTCTGGTAAT+TGG - 42366:566-585 MS.gene37214:CDS 35.0%
!! TCTCCATCACATTTTGAGAA+TGG - 42366:2112-2131 MS.gene37214:CDS 35.0%
!!! TTTTCCTCACTGATTTGTGT+TGG - 42366:1143-1162 MS.gene37214:intron 35.0%
AATGGAGATTGGAACAAAGG+AGG - 42366:2130-2149 MS.gene37214:CDS 40.0%
ATGAGTATCTTCGTTGGAGA+TGG - 42366:680-699 MS.gene37214:intron 40.0%
ATGGACCACCCTAATAACTA+TGG - 42366:2326-2345 MS.gene37214:CDS 40.0%
ATGGAGATTGGAACAAAGGA+GGG - 42366:2131-2150 MS.gene37214:CDS 40.0%
CATGTCCATAGTTATTAGGG+TGG + 42366:2334-2353 MS.gene37214:intergenic 40.0%
CTTCCCATTGAGAATCTCAT+TGG + 42366:392-411 MS.gene37214:intergenic 40.0%
CTTGTTGGATGCAACAAATG+TGG - 42366:1972-1991 MS.gene37214:CDS 40.0%
GACATAGTGATCATTTCAGC+AGG - 42366:1906-1925 MS.gene37214:intron 40.0%
GAGAATGGAGATTGGAACAA+AGG - 42366:2127-2146 MS.gene37214:CDS 40.0%
GAGGACAAAACCATTTAGCA+AGG - 42366:2162-2181 MS.gene37214:CDS 40.0%
GATGGATACAATCAAGGGAA+GGG + 42366:1257-1276 MS.gene37214:intergenic 40.0%
TAACCCATCTAAATTGGCAC+CGG + 42366:1036-1055 MS.gene37214:intergenic 40.0%
TAGATGAGGTAGATGAAGCA+TGG - 42366:1862-1881 MS.gene37214:intron 40.0%
TAGTAAGGTCCTTCAGAATG+AGG + 42366:595-614 MS.gene37214:intergenic 40.0%
TGATCATTTCAGCAGGACAT+TGG - 42366:1913-1932 MS.gene37214:intron 40.0%
TGGATGCAACAAATGTGGAA+TGG - 42366:1977-1996 MS.gene37214:CDS 40.0%
! ACAGAAGACATGTTTGGTGA+TGG + 42366:511-530 MS.gene37214:intergenic 40.0%
! ATTTCACCCTTGGTAATCTG+TGG - 42366:1766-1785 MS.gene37214:intron 40.0%
! TTTGGTTTCACATTTGGAGG+AGG - 42366:1368-1387 MS.gene37214:intron 40.0%
!! AAGAGGAGAGCATCAAAGAA+AGG - 42366:2254-2273 MS.gene37214:CDS 40.0%
!!! AAGGTTTTAAATCGCAGCCA+CGG + 42366:1219-1238 MS.gene37214:intergenic 40.0%
!!! CATAAATTTTTGGGTTGGCC+TGG - 42366:925-944 MS.gene37214:CDS 40.0%
AACCCATCTAAATTGGCACC+GGG + 42366:1035-1054 MS.gene37214:intergenic 45.0%
AACGGAAGCTCGCATTCATT+TGG + 42366:709-728 MS.gene37214:intergenic 45.0%
ACAAAGGAGGGAATTGTGTG+AGG - 42366:2143-2162 MS.gene37214:CDS 45.0%
ACAATCAAGGGAAGGGAACA+AGG + 42366:1250-1269 MS.gene37214:intergenic 45.0%
AGATCGAACCTGATAACTCG+AGG + 42366:984-1003 MS.gene37214:intergenic 45.0%
AGTCTCAAACCAATACCACC+AGG + 42366:946-965 MS.gene37214:intergenic 45.0%
AGTTATTAGGGTGGTCCATC+AGG + 42366:2325-2344 MS.gene37214:intergenic 45.0%
ATGGTGACCACAGATTACCA+AGG + 42366:1776-1795 MS.gene37214:intergenic 45.0%
CAACGAAGATACTCATCGTC+CGG + 42366:676-695 MS.gene37214:intergenic 45.0%
GCCGATTACAATTTCACCCT+TGG - 42366:1756-1775 MS.gene37214:intron 45.0%
GGATGGATACAATCAAGGGA+AGG + 42366:1258-1277 MS.gene37214:intergenic 45.0%
TGGTGACCACAGATTACCAA+GGG + 42366:1775-1794 MS.gene37214:intergenic 45.0%
!!! AAATTTTTGGGTTGGCCTGG+TGG - 42366:928-947 MS.gene37214:CDS 45.0%
ACCCATCTAAATTGGCACCG+GGG + 42366:1034-1053 MS.gene37214:intergenic 50.0%
CGGACGATGAGTATCTTCGT+TGG - 42366:674-693 MS.gene37214:intron 50.0%
CTGCATGAAGTTTGGTAGGC+CGG - 42366:654-673 MS.gene37214:CDS 50.0%
GAATCGAACCTGATACCTCG+AGG + 42366:1010-1029 MS.gene37214:intergenic 50.0%
GCGACCAACACAAATCAGTG+AGG + 42366:1150-1169 MS.gene37214:intergenic 50.0%
GTATCAGGTTCGATTCTCCC+CGG - 42366:1014-1033 MS.gene37214:CDS 50.0%
TCGAACCTGATAACTCGAGG+AGG + 42366:981-1000 MS.gene37214:intergenic 50.0%
! TCCCCGGTGCCAATTTAGAT+GGG - 42366:1030-1049 MS.gene37214:CDS 50.0%
CGACTTGAGCCGTGACATCA+AGG - 42366:1110-1129 MS.gene37214:intron 55.0%
GTGCTCCTCCTCGAGTTATC+AGG - 42366:973-992 MS.gene37214:CDS 55.0%
TCGAACCTGATACCTCGAGG+AGG + 42366:1007-1026 MS.gene37214:intergenic 55.0%
! CTCCCCGGTGCCAATTTAGA+TGG - 42366:1029-1048 MS.gene37214:CDS 55.0%
! GATCTCCTCCTCGAGGTATC+AGG - 42366:999-1018 MS.gene37214:CDS 55.0%
!! TTGGGTTGGCCTGGTGGTAT+TGG - 42366:934-953 MS.gene37214:CDS 55.0%
!! TTTTCAGGCGTCTCAACCCG+AGG - 42366:1680-1699 MS.gene37214:intron 55.0%
CACGGCTCAAGTCGCAGTCA+CGG + 42366:1104-1123 MS.gene37214:intergenic 60.0%
CAGGTTCGATCTCCTCCTCG+AGG - 42366:992-1011 MS.gene37214:CDS 60.0%


Chromosome Type Strat End Strand Name
42366 gene 376 2388 376 ID=MS.gene37214
42366 mRNA 376 2388 376 ID=MS.gene37214.t1;Parent=MS.gene37214
42366 exon 1927 2388 1927 ID=MS.gene37214.t1.exon1;Parent=MS.gene37214.t1
42366 CDS 1927 2388 1927 ID=cds.MS.gene37214.t1;Parent=MS.gene37214.t1
42366 exon 735 1077 735 ID=MS.gene37214.t1.exon2;Parent=MS.gene37214.t1
42366 CDS 735 1077 735 ID=cds.MS.gene37214.t1;Parent=MS.gene37214.t1
42366 exon 502 675 502 ID=MS.gene37214.t1.exon3;Parent=MS.gene37214.t1
42366 CDS 502 675 502 ID=cds.MS.gene37214.t1;Parent=MS.gene37214.t1
42366 exon 376 443 376 ID=MS.gene37214.t1.exon4;Parent=MS.gene37214.t1
42366 CDS 376 443 376 ID=cds.MS.gene37214.t1;Parent=MS.gene37214.t1
Gene Sequence

>MS.gene37214

ATGAAGTTTCAAACCAATGAGATTCTCAATGGGAAGTACACAACAAGAAAAACAACCAAAAGTGTTTTTCTTGTACCATTCACTCTTCTTCTCATCATGTTTCCTCTTATTCTCATGAGAAACACAGATGAACCATCACCAAACATGTCTTCTGTCAAACACATGAACAACAAAACAGAAACAAAAGGATGTGACATCTTTTCTGGTAATTGGATTCCTCATTCTGAAGGACCTTACTATAACAATGTAACATGCAAATGGATGATTGATGAACAAAACTGCATGAAGTTTGGTAGGCCGGACGATGAGTATCTTCGTTGGAGATGGAAACCAAATGAATGCGAGCTTCCGTTGTTTAATGCAACTCAATTCTTAGAGCTTGTTAGAGGAAAGAAAATGGTTTTTGTTGGAGATTCTGTTGGGAGAAATCAGTTGCAATCTTTGTTGTGCCTCCTAAGTCAAGTAAGTAATGATCAACTCATACTGTTTTCTCTGTTTTTTTTTTCAAAAGAGCAGGAGAATTTTTTTTTGTTTACATCAAACAGTTTTCATAAATTTTTGGGTTGGCCTGGTGGTATTGGTTTGAGACTTGAGAGTGTGCTCCTCCTCGAGTTATCAGGTTCGATCTCCTCCTCGAGGTATCAGGTTCGATTCTCCCCGGTGCCAATTTAGATGGGTTAATTTAGTTTCTTCAAAAAAAGTTTTCATAACATAGTATACTATGTCCGTGACTGCGACTTGAGCCGTGACATCAAGGTTTTTTCATGTTTTCCTCACTGATTTGTGTTGGTCGCGTCAATCGTATTTGATTGTGATTCTCCGCATTATCTAAGAATGCAACCGTGGCTGCGATTTAAAACCTTGTTTTTATCCTTGTTCCCTTCCCTTGATTGTATCCATCCTTCTTAGTTAATCATTTCACAAATGTTTACACAAATTTTTGTTGATGATCTTGTCTGCATAGTTATATTGCAAATCCATCTTAGTGAATGTTTGGTTTCACATTTGGAGGAGGAAAAATTGATTCTAGAGGTGTAAAATTAATTTTGACATGCTTCGATGTTTTAAAGTAAATTGATTTTGCCTCTAGAATTGATTCTAACTTGAAGCTAGAATTCGGAACTTTTGACTCTACGATTAATTTAGTCTCAAATTTACTGTGGAACTCACTTTTTCATTTATATATCTAAAATCAATTTACATTCAACTCACTTTTAGCTAGAATCTATTTGACAAAATCAATTATATACAAAACCAATTTTTGACACCAGATAACCAAACATGCTTATGTATTTTTTTTTCTTTTTTCAGGCGTCTCAACCCGAGGATGTTTCTCATAAATACACAACAAATGTCATATATTTCAGACGGTATTTCTTCGCCGATTACAATTTCACCCTTGGTAATCTGTGGTCACCATACTTTGTGAGATCAAAGGATGCTGACAAAAATGGTCATTCATACAACAGCATCATGAAATTATATGTAGATGAGGTAGATGAAGCATGGTCTAGTCAAGTTAAAAACTTTGACATAGTGATCATTTCAGCAGGACATTGGTTTTTTAGACCATTATTGTTCTATGAAAAGGGTAAACTTGTTGGATGCAACAAATGTGGAATGGAGAATGTAACAGATCTTGCTCACTATTATGGTACAAAATGGCATTTAGGACTGCATTTAAAACCTTAACAAATCTTGAAAATTTTAAAGGTGTGACATTTTTTAGGACATTTTCTCCATCACATTTTGAGAATGGAGATTGGAACAAAGGAGGGAATTGTGTGAGGACAAAACCATTTAGCAAGGAAGAAATGAACTTAAATGGTTACATTCTTGAGACATATTTAACACAAGTGAATGAATTTAAAGTAGCACAAGAGGAGAGCATCAAAGAAAGGTTTGAAATTTTTGATGTTAAATACAACTGAAATTATGTTGTGAGACCTGATGGACCACCCTAATAACTATGGACATGCTATGGTAAAAAATGTGACATTTTACAATGATTGT

Protein sequence

>MS.gene37214.t1

MKFQTNEILNGKYTTRKTTKSVFLVPFTLLLIMFPLILMRNTDEPSPNMSSVKHMNNKTETKGCDIFSGNWIPHSEGPYYNNVTCKWMIDEQNCMKFGRPDDEYLRWRWKPNECELPLFNATQFLELVRGKKMVFVGDSVGRNQLQSLLCLLSQASQPEDVSHKYTTNVIYFRRYFFADYNFTLGNLWSPYFVRSKDADKNGHSYNSIMKLYVDEVDEAWSSQVKNFDIVIISAGHWFFRPLLFYEKGKLVGCNKCGMENVTDLAHYYGVTFFRTFSPSHFENGDWNKGGNCVRTKPFSKEEMNLNGYILETYLTQVNEFKVAQEENLMDHPNNYGHAMVKNVTFYNDC