Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37319.t1 | XP_003626240.2 | 86.5 | 319 | 43 | 0 | 1 | 319 | 1 | 319 | 5.90E-168 | 600.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37319.t1 | I6YGS0 | 38.4 | 320 | 177 | 9 | 7 | 316 | 7 | 316 | 2.5e-58 | 227.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37319.t1 | G7KXL9 | 86.5 | 319 | 43 | 0 | 1 | 319 | 1 | 319 | 4.2e-168 | 600.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050923 | MS.gene37319 | 0.88929 | 2.77E-73 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene37319 | MS.gene035371 | PPI |
| MS.gene37319 | MS.gene071502 | PPI |
| MS.gene071504 | MS.gene37319 | PPI |
| MS.gene066360 | MS.gene37319 | PPI |
| MS.gene89620 | MS.gene37319 | PPI |
| MS.gene37319 | MS.gene066361 | PPI |
| MS.gene37319 | MS.gene071500 | PPI |
| MS.gene37319 | MS.gene041604 | PPI |
| MS.gene76453 | MS.gene37319 | PPI |
| MS.gene37319 | MS.gene025707 | PPI |
| MS.gene37319 | MS.gene22955 | PPI |
| MS.gene37319 | MS.gene035369 | PPI |
| MS.gene035367 | MS.gene37319 | PPI |
| MS.gene37319 | MS.gene035373 | PPI |
| MS.gene37319 | MS.gene07001 | PPI |
| MS.gene37319 | MS.gene012063 | PPI |
| MS.gene77823 | MS.gene37319 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37319.t1 | MTR_7g112960 | 86.520 | 319 | 43 | 0 | 1 | 319 | 1 | 319 | 0.0 | 593 |
| MS.gene37319.t1 | MTR_7g112963 | 84.953 | 319 | 48 | 0 | 1 | 319 | 1 | 319 | 0.0 | 585 |
| MS.gene37319.t1 | MTR_7g112970 | 86.207 | 319 | 41 | 1 | 1 | 319 | 1 | 316 | 0.0 | 584 |
| MS.gene37319.t1 | MTR_7g113010 | 95.730 | 281 | 12 | 0 | 1 | 281 | 1 | 281 | 0.0 | 568 |
| MS.gene37319.t1 | MTR_7g113020 | 75.389 | 321 | 75 | 2 | 1 | 319 | 1 | 319 | 0.0 | 516 |
| MS.gene37319.t1 | MTR_7g113050 | 74.143 | 321 | 79 | 2 | 1 | 319 | 1 | 319 | 0.0 | 509 |
| MS.gene37319.t1 | MTR_7g113030 | 73.041 | 319 | 86 | 0 | 1 | 319 | 1 | 319 | 0.0 | 506 |
| MS.gene37319.t1 | MTR_7g112615 | 73.520 | 321 | 81 | 2 | 1 | 319 | 1 | 319 | 0.0 | 503 |
| MS.gene37319.t1 | MTR_7g112620 | 72.274 | 321 | 85 | 2 | 1 | 319 | 1 | 319 | 2.49e-180 | 501 |
| MS.gene37319.t1 | MTR_4g005160 | 66.154 | 325 | 101 | 5 | 1 | 319 | 1 | 322 | 5.95e-159 | 447 |
| MS.gene37319.t1 | MTR_4g120240 | 60.125 | 321 | 124 | 3 | 1 | 319 | 37 | 355 | 3.67e-146 | 416 |
| MS.gene37319.t1 | MTR_7g108825 | 60.625 | 320 | 122 | 3 | 1 | 319 | 1 | 317 | 8.86e-144 | 408 |
| MS.gene37319.t1 | MTR_7g113050 | 73.333 | 240 | 60 | 2 | 1 | 238 | 1 | 238 | 2.86e-132 | 376 |
| MS.gene37319.t1 | MTR_7g112615 | 72.500 | 240 | 62 | 2 | 1 | 238 | 1 | 238 | 1.29e-130 | 372 |
| MS.gene37319.t1 | MTR_8g076680 | 47.826 | 322 | 156 | 5 | 1 | 318 | 3 | 316 | 8.59e-106 | 312 |
| MS.gene37319.t1 | MTR_7g108825 | 60.669 | 239 | 90 | 3 | 1 | 238 | 1 | 236 | 4.68e-102 | 299 |
| MS.gene37319.t1 | MTR_7g112615 | 81.132 | 159 | 30 | 0 | 1 | 159 | 1 | 159 | 3.06e-98 | 287 |
| MS.gene37319.t1 | MTR_1g083480 | 74.843 | 159 | 36 | 2 | 1 | 156 | 1 | 158 | 1.96e-85 | 254 |
| MS.gene37319.t1 | MTR_8g076680 | 47.934 | 242 | 116 | 3 | 1 | 238 | 3 | 238 | 2.35e-80 | 244 |
| MS.gene37319.t1 | MTR_2g090240 | 38.199 | 322 | 183 | 7 | 1 | 318 | 1 | 310 | 8.48e-68 | 214 |
| MS.gene37319.t1 | MTR_2g090245 | 38.509 | 322 | 182 | 8 | 1 | 318 | 1 | 310 | 4.77e-67 | 213 |
| MS.gene37319.t1 | MTR_4g089060 | 35.714 | 322 | 192 | 6 | 1 | 319 | 1 | 310 | 1.15e-66 | 211 |
| MS.gene37319.t1 | MTR_4g089040 | 36.025 | 322 | 191 | 6 | 1 | 319 | 1 | 310 | 1.90e-65 | 208 |
| MS.gene37319.t1 | MTR_7g112910 | 47.012 | 251 | 74 | 7 | 72 | 319 | 1 | 195 | 1.32e-64 | 202 |
| MS.gene37319.t1 | MTR_4g089060 | 33.238 | 349 | 191 | 7 | 1 | 319 | 1 | 337 | 1.49e-61 | 199 |
| MS.gene37319.t1 | MTR_4g089060 | 37.339 | 233 | 137 | 3 | 1 | 231 | 1 | 226 | 8.73e-56 | 181 |
| MS.gene37319.t1 | MTR_3g024250 | 76.415 | 106 | 25 | 0 | 47 | 152 | 2 | 107 | 1.60e-55 | 177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37319.t1 | AT3G05600 | 62.654 | 324 | 114 | 4 | 1 | 318 | 1 | 323 | 1.57e-154 | 436 |
| MS.gene37319.t1 | AT4G02340 | 59.688 | 320 | 124 | 3 | 1 | 319 | 1 | 316 | 2.65e-144 | 410 |
| MS.gene37319.t1 | AT4G15960 | 53.538 | 325 | 144 | 3 | 1 | 319 | 51 | 374 | 7.74e-129 | 372 |
| MS.gene37319.t1 | AT2G26740 | 56.522 | 322 | 133 | 4 | 4 | 319 | 1 | 321 | 2.84e-123 | 356 |
| MS.gene37319.t1 | AT2G26750 | 55.452 | 321 | 137 | 4 | 4 | 319 | 1 | 320 | 1.11e-119 | 347 |
| MS.gene37319.t1 | AT3G05600 | 64.344 | 244 | 80 | 4 | 1 | 238 | 1 | 243 | 1.71e-115 | 333 |
| MS.gene37319.t1 | AT4G15955 | 50.462 | 325 | 125 | 5 | 5 | 319 | 6 | 304 | 1.87e-111 | 325 |
| MS.gene37319.t1 | AT3G51000 | 50.000 | 318 | 152 | 6 | 4 | 318 | 5 | 318 | 1.02e-108 | 319 |
| MS.gene37319.t1 | AT4G15955 | 61.850 | 173 | 56 | 2 | 5 | 167 | 6 | 178 | 1.51e-74 | 227 |
| MS.gene37319.t1 | AT4G15955 | 61.212 | 165 | 54 | 2 | 5 | 159 | 6 | 170 | 9.16e-70 | 215 |
Find 94 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCTTACAGGTCGGAATTC+TGG | 0.183747 | 7.2:-4234680 | MS.gene37319:CDS |
| CCTTCTTTGGGTAGGATTAA+TGG | 0.188302 | 7.2:+4234656 | None:intergenic |
| ATAATCACTTCCTCCAAATT+TGG | 0.201843 | 7.2:+4233677 | None:intergenic |
| TAAGAAAGATGTGCCAAATT+TGG | 0.214008 | 7.2:-4233690 | MS.gene37319:CDS |
| GATATAGTTTATGCTTCTTT+TGG | 0.237327 | 7.2:-4233743 | MS.gene37319:CDS |
| ATGAGATAACAAGCCTTCTT+TGG | 0.249562 | 7.2:+4234643 | None:intergenic |
| CCATCAACAGGTTTCACTTT+GGG | 0.262116 | 7.2:+4235719 | None:intergenic |
| TAACTTCCTCAGCAGCTTCT+TGG | 0.283005 | 7.2:+4233627 | None:intergenic |
| ATACAAAGCCCCTCCCTTCT+TGG | 0.294620 | 7.2:-4234607 | MS.gene37319:CDS |
| GGTTTCACTTTGGGGTTTCT+TGG | 0.301325 | 7.2:+4235728 | None:intergenic |
| GTGATCAAGGCTATGCTTAC+AGG | 0.301645 | 7.2:-4234692 | MS.gene37319:CDS |
| TTTCCTTGTGGCTCATGATT+GGG | 0.323649 | 7.2:-4235831 | MS.gene37319:CDS |
| GCTTCTAAATTTGAAAAGTC+GGG | 0.325588 | 7.2:-4234557 | MS.gene37319:CDS |
| CATGAGCCACAAGGAAAATT+TGG | 0.330260 | 7.2:+4235837 | None:intergenic |
| GAAGTTCATCACAGGCGATT+TGG | 0.348503 | 7.2:-4233765 | MS.gene37319:CDS |
| TGCTTACAGGTCGGAATTCT+GGG | 0.353613 | 7.2:-4234679 | MS.gene37319:CDS |
| TGAGATTTCTATAGTAGTTA+AGG | 0.359150 | 7.2:+4234522 | None:intergenic |
| CATGATTGGGGTGCCATCAT+TGG | 0.372270 | 7.2:-4235818 | MS.gene37319:CDS |
| GATGGCATGCAAGCTTTGTT+TGG | 0.377529 | 7.2:-4235701 | MS.gene37319:CDS |
| CTGTTATGTTCATAGGAATT+GGG | 0.394679 | 7.2:-4233831 | MS.gene37319:intron |
| CGCCACCAGATTGCGGCTCT+CGG | 0.403229 | 7.2:-4235995 | MS.gene37319:CDS |
| TTATTATATCTGCAGATTCC+AGG | 0.403584 | 7.2:-4235672 | MS.gene37319:intron |
| TCACCGTAGCCACGAAGATC+TGG | 0.407123 | 7.2:+4235947 | None:intergenic |
| ACATAAGCCTTGACTTTCTC+AGG | 0.407263 | 7.2:+4235773 | None:intergenic |
| CGCCAAGAGTACCAGATATC+AGG | 0.407327 | 7.2:+4236016 | None:intergenic |
| TTCCTGATATCTGGTACTCT+TGG | 0.411858 | 7.2:-4236018 | MS.gene37319:CDS |
| AATTCGGCTTCTGCTTTCCC+TGG | 0.413011 | 7.2:+4234737 | None:intergenic |
| ATAGCCTTGATCACAAGTTC+TGG | 0.414013 | 7.2:+4234701 | None:intergenic |
| CCCAAAGTGAAACCTGTTGA+TGG | 0.418758 | 7.2:-4235719 | MS.gene37319:CDS |
| TGAGATAACAAGCCTTCTTT+GGG | 0.420102 | 7.2:+4234644 | None:intergenic |
| TGGGCTACCCTTGGCAAATT+CGG | 0.422231 | 7.2:+4234721 | None:intergenic |
| GGCTTTGTATTTGAAACATC+GGG | 0.424711 | 7.2:+4234620 | None:intergenic |
| TGCTTCTAAATTTGAAAAGT+CGG | 0.427783 | 7.2:-4234558 | MS.gene37319:CDS |
| AAAGCTTGCATGCCATCAAC+AGG | 0.432275 | 7.2:+4235707 | None:intergenic |
| GAGAGCCGAGAGCCGCAATC+TGG | 0.462159 | 7.2:+4235990 | None:intergenic |
| GCCATCAACAGGTTTCACTT+TGG | 0.465827 | 7.2:+4235718 | None:intergenic |
| CATCAACAGGTTTCACTTTG+GGG | 0.472252 | 7.2:+4235720 | None:intergenic |
| CTTCACTGGAACTTTAACCT+TGG | 0.473353 | 7.2:+4233784 | None:intergenic |
| TTTGGAGGAAGTGATTATAC+AGG | 0.473618 | 7.2:-4233672 | MS.gene37319:CDS |
| CACAAGTTCTGGGCTACCCT+TGG | 0.489572 | 7.2:+4234712 | None:intergenic |
| AAAATGCATGTCGCAGAGAA+AGG | 0.491525 | 7.2:-4236076 | MS.gene37319:CDS |
| TAGCCTTGATCACAAGTTCT+GGG | 0.495550 | 7.2:+4234702 | None:intergenic |
| ATTGCGGCTCTCGGCTCTCT+CGG | 0.495623 | 7.2:-4235986 | MS.gene37319:CDS |
| GAAAGATGTGCCAAATTTGG+AGG | 0.498854 | 7.2:-4233687 | MS.gene37319:CDS |
| TCGCCTGTGATGAACTTCAC+TGG | 0.499059 | 7.2:+4233770 | None:intergenic |
| GCTCCAGATCTTCGTGGCTA+CGG | 0.504735 | 7.2:-4235950 | MS.gene37319:CDS |
| CAATTCATGTGACAGGAACC+AGG | 0.511502 | 7.2:-4234755 | MS.gene37319:intron |
| TCTTCTTGTGAGAGCCAAGA+AGG | 0.512333 | 7.2:+4234593 | None:intergenic |
| CCATGAAGGAACAAAACAAC+AGG | 0.513488 | 7.2:+4236043 | None:intergenic |
| TAGCCCAGAACTTGTGATCA+AGG | 0.517411 | 7.2:-4234705 | MS.gene37319:CDS |
| TTCCTTGTGGCTCATGATTG+GGG | 0.518936 | 7.2:-4235830 | MS.gene37319:CDS |
| ACAGAGATGCCAACCAATGA+TGG | 0.522500 | 7.2:+4235805 | None:intergenic |
| CGTGTAGCTACTAACTGAAG+TGG | 0.524060 | 7.2:+4235913 | None:intergenic |
| CCATTAATCCTACCCAAAGA+AGG | 0.525729 | 7.2:-4234656 | MS.gene37319:CDS |
| GCTGTTGCTCCAGATCTTCG+TGG | 0.527210 | 7.2:-4235956 | MS.gene37319:CDS |
| TTGTGAGAGCCAAGAAGGGA+GGG | 0.528638 | 7.2:+4234598 | None:intergenic |
| GAGCTCACAGCAGCATGGAC+CGG | 0.535565 | 7.2:-4233809 | MS.gene37319:CDS |
| AGCCGAGAGCCGCAATCTGG+TGG | 0.549085 | 7.2:+4235993 | None:intergenic |
| GTCGCAGAGAAAGGAAAAGA+AGG | 0.549089 | 7.2:-4236067 | MS.gene37319:CDS |
| ATTGGGGTGCCATCATTGGT+TGG | 0.551746 | 7.2:-4235814 | MS.gene37319:CDS |
| ATAACAAGCCTTCTTTGGGT+AGG | 0.551798 | 7.2:+4234648 | None:intergenic |
| GGGCTTTGTATTTGAAACAT+CGG | 0.553097 | 7.2:+4234619 | None:intergenic |
| CACAGAACAGTGGAAGTGAA+TGG | 0.555575 | 7.2:-4236103 | MS.gene37319:CDS |
| TGGAACTTTAACCTTGGCTC+CGG | 0.556514 | 7.2:+4233790 | None:intergenic |
| TGTGAGAGCCAAGAAGGGAG+GGG | 0.561355 | 7.2:+4234599 | None:intergenic |
| CTTCTAAATTTGAAAAGTCG+GGG | 0.579960 | 7.2:-4234556 | MS.gene37319:CDS |
| AGCAGCATGGACCGGAGCCA+AGG | 0.582534 | 7.2:-4233801 | MS.gene37319:CDS |
| AGCAGAAGCCGAATTTGCCA+AGG | 0.586217 | 7.2:-4234729 | MS.gene37319:CDS |
| TTTGAAAAGTCGGGGTTCAG+TGG | 0.587683 | 7.2:-4234548 | MS.gene37319:CDS |
| GAAAAGTCGGGGTTCAGTGG+TGG | 0.588050 | 7.2:-4234545 | MS.gene37319:CDS |
| ACTAACTGAAGTGGGAGCAT+CGG | 0.592618 | 7.2:+4235922 | None:intergenic |
| CTCTTGGCGCCACCAGATTG+CGG | 0.594106 | 7.2:-4236002 | MS.gene37319:CDS |
| CTTGTGAGAGCCAAGAAGGG+AGG | 0.599078 | 7.2:+4234597 | None:intergenic |
| GTTTCGTCCTGAGAAAGTCA+AGG | 0.602031 | 7.2:-4235780 | MS.gene37319:CDS |
| GTTGCTCTAATTGACTCACT+TGG | 0.604533 | 7.2:-4235866 | MS.gene37319:CDS |
| TTGGGGTTTCTTGGTAACAA+CGG | 0.609164 | 7.2:+4235737 | None:intergenic |
| GTTCCAGTGAAGTTCATCAC+AGG | 0.615248 | 7.2:-4233773 | MS.gene37319:CDS |
| CACCCCAATCATGAGCCACA+AGG | 0.623498 | 7.2:+4235828 | None:intergenic |
| TAACAACCAAGAAGCTGCTG+AGG | 0.623686 | 7.2:-4233633 | MS.gene37319:CDS |
| CTTCTTGTGAGAGCCAAGAA+GGG | 0.624050 | 7.2:+4234594 | None:intergenic |
| TCTAATTGACTCACTTGGTG+TGG | 0.624858 | 7.2:-4235861 | MS.gene37319:CDS |
| AGATATCAGGAAAACCATGA+AGG | 0.624982 | 7.2:+4236029 | None:intergenic |
| ATTGGGAGCTCACAGCAGCA+TGG | 0.628562 | 7.2:-4233814 | MS.gene37319:CDS |
| AGGAGTAGAGCACAGAACAG+TGG | 0.630212 | 7.2:-4236113 | MS.gene37319:CDS |
| AGTGATTATACAGGAAGGTG+TGG | 0.637871 | 7.2:-4233663 | MS.gene37319:CDS |
| AATTCATGTGACAGGAACCA+GGG | 0.640650 | 7.2:-4234754 | MS.gene37319:intron |
| GAGGAAGTGATTATACAGGA+AGG | 0.643542 | 7.2:-4233668 | MS.gene37319:CDS |
| AAGCAATACATCGAGAGTGG+TGG | 0.645763 | 7.2:-4233716 | MS.gene37319:CDS |
| GTGTAGCTACTAACTGAAGT+GGG | 0.649111 | 7.2:+4235914 | None:intergenic |
| GCGAAGCAATACATCGAGAG+TGG | 0.652428 | 7.2:-4233719 | MS.gene37319:CDS |
| GAAGATCTGGAGCAACAGCA+CGG | 0.677123 | 7.2:+4235960 | None:intergenic |
| TCAAGGCTATGCTTACAGGT+CGG | 0.686752 | 7.2:-4234688 | MS.gene37319:CDS |
| GCAGAAGCCGAATTTGCCAA+GGG | 0.692748 | 7.2:-4234728 | MS.gene37319:CDS |
| TTGGTAACAACGGAACACTG+AGG | 0.754230 | 7.2:+4235747 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTAAATAATAAATATTT+TGG | - | chr7.2:4235484-4235503 | MS.gene37319:intron | 0.0% |
| !! | AAATGAAAAGAAATAAAAAT+AGG | + | chr7.2:4235225-4235244 | None:intergenic | 10.0% |
| !! | AATGAAAAGAAATAAAAATA+GGG | + | chr7.2:4235224-4235243 | None:intergenic | 10.0% |
| !! | ATTTAGTTACTTAAACAAAA+GGG | + | chr7.2:4234145-4234164 | None:intergenic | 15.0% |
| !!! | ACAAGTTTTTTAAAGTTAAA+GGG | + | chr7.2:4234365-4234384 | None:intergenic | 15.0% |
| !!! | ATAATTTGTGACAATTTTTT+TGG | - | chr7.2:4234511-4234530 | MS.gene37319:intron | 15.0% |
| !! | AGTGCAAATAAACATATAAA+TGG | + | chr7.2:4235288-4235307 | None:intergenic | 20.0% |
| !! | ATGATTAAGTTCATATGAAA+AGG | - | chr7.2:4234314-4234333 | MS.gene37319:intron | 20.0% |
| !! | CATTTAGTTACTTAAACAAA+AGG | + | chr7.2:4234146-4234165 | None:intergenic | 20.0% |
| !! | GATTAATTAATAACACGATT+TGG | - | chr7.2:4234838-4234857 | MS.gene37319:intron | 20.0% |
| !! | TGTACGATCATAATATAAAA+AGG | + | chr7.2:4235317-4235336 | None:intergenic | 20.0% |
| !!! | AATAAATATTTTGGTATGTG+CGG | - | chr7.2:4235493-4235512 | MS.gene37319:intron | 20.0% |
| !!! | AATAATGCATTCACTTATTT+TGG | - | chr7.2:4234879-4234898 | MS.gene37319:intron | 20.0% |
| !!! | ATTTTGTTTATAATTGAGAC+TGG | - | chr7.2:4234816-4234835 | MS.gene37319:intron | 20.0% |
| !!! | CACAAGTTTTTTAAAGTTAA+AGG | + | chr7.2:4234366-4234385 | None:intergenic | 20.0% |
| !!! | GGTTAATTTTTACTTACATA+AGG | - | chr7.2:4234119-4234138 | MS.gene37319:intron | 20.0% |
| !!! | TATATGTTTATTTGCACTTT+TGG | - | chr7.2:4235290-4235309 | MS.gene37319:intron | 20.0% |
| !!! | TTATTTTGGAATTTACAGAT+GGG | - | chr7.2:4234893-4234912 | MS.gene37319:intron | 20.0% |
| ! | AACATGTTTGGATTTATGTT+GGG | + | chr7.2:4235740-4235759 | None:intergenic | 25.0% |
| ! | AATTCTTCTGTTATGTTCAT+AGG | - | chr7.2:4235872-4235891 | MS.gene37319:CDS | 25.0% |
| ! | CAAACACATGTAAAATTATC+AGG | + | chr7.2:4234396-4234415 | None:intergenic | 25.0% |
| ! | GAAAAGGAAAAAAAGTTCAA+AGG | - | chr7.2:4234330-4234349 | MS.gene37319:intron | 25.0% |
| ! | TGAGATTTCTATAGTAGTTA+AGG | + | chr7.2:4235191-4235210 | None:intergenic | 25.0% |
| ! | TGCTTCTAAATTTGAAAAGT+CGG | - | chr7.2:4235152-4235171 | MS.gene37319:intron | 25.0% |
| ! | TTATTGCATAAACCAAAAGA+AGG | + | chr7.2:4234255-4234274 | None:intergenic | 25.0% |
| ! | TTGTAACGATTGAAACATAT+AGG | - | chr7.2:4235371-4235390 | MS.gene37319:intron | 25.0% |
| !! | ATTTTCCTTTAACAAGATGT+GGG | - | chr7.2:4234635-4234654 | MS.gene37319:CDS | 25.0% |
| !! | CTTGAAATGCTTTTATACAT+TGG | - | chr7.2:4234098-4234117 | MS.gene37319:intron | 25.0% |
| !! | GATATAGTTTATGCTTCTTT+TGG | - | chr7.2:4235967-4235986 | MS.gene37319:CDS | 25.0% |
| !!! | ATTCTTTTTTGGATATGAAG+GGG | - | chr7.2:4234768-4234787 | MS.gene37319:intron | 25.0% |
| !!! | CTTATTTTGGAATTTACAGA+TGG | - | chr7.2:4234892-4234911 | MS.gene37319:intron | 25.0% |
| !!! | GATTCTTTTTTGGATATGAA+GGG | - | chr7.2:4234767-4234786 | MS.gene37319:intron | 25.0% |
| !!! | GTTTAAACGTGATTCTTTTT+TGG | - | chr7.2:4234757-4234776 | MS.gene37319:intron | 25.0% |
| !!! | TGATTCTTTTTTGGATATGA+AGG | - | chr7.2:4234766-4234785 | MS.gene37319:intron | 25.0% |
| AAATGCAAGCTTTCAATTTG+TGG | - | chr7.2:4234161-4234180 | MS.gene37319:intron | 30.0% | |
| AACATGTTCGGATTTATGTT+GGG | + | chr7.2:4235780-4235799 | None:intergenic | 30.0% | |
| AATATTCCAATTCATGTGAC+AGG | - | chr7.2:4234948-4234967 | MS.gene37319:intron | 30.0% | |
| AATTTGTGGTTGTGTTAGAA+TGG | - | chr7.2:4234175-4234194 | MS.gene37319:intron | 30.0% | |
| AGTTACAATCTATGGAAGAT+AGG | - | chr7.2:4234539-4234558 | MS.gene37319:CDS | 30.0% | |
| ATAATCACTTCCTCCAAATT+TGG | + | chr7.2:4236036-4236055 | None:intergenic | 30.0% | |
| ATCATTTGAACACAACACTT+CGG | + | chr7.2:4235519-4235538 | None:intergenic | 30.0% | |
| ATTTGTGGTTGTGTTAGAAT+GGG | - | chr7.2:4234176-4234195 | MS.gene37319:intron | 30.0% | |
| CAATCTCACATATTTAGAAG+AGG | - | chr7.2:4235422-4235441 | MS.gene37319:intron | 30.0% | |
| CTCTCTCAATATGATGTTAA+GGG | - | chr7.2:4234602-4234621 | MS.gene37319:CDS | 30.0% | |
| CTGTTATGTTCATAGGAATT+GGG | - | chr7.2:4235879-4235898 | MS.gene37319:CDS | 30.0% | |
| CTTCTAAATTTGAAAAGTCG+GGG | - | chr7.2:4235154-4235173 | MS.gene37319:intron | 30.0% | |
| GAACATGTTTGGATTTATGT+TGG | + | chr7.2:4235741-4235760 | None:intergenic | 30.0% | |
| GATTTCACAATGAACATGTT+TGG | + | chr7.2:4235752-4235771 | None:intergenic | 30.0% | |
| GCTTCTAAATTTGAAAAGTC+GGG | - | chr7.2:4235153-4235172 | MS.gene37319:intron | 30.0% | |
| GTTACAATCTATGGAAGATA+GGG | - | chr7.2:4234540-4234559 | MS.gene37319:CDS | 30.0% | |
| TAAGAAAGATGTGCCAAATT+TGG | - | chr7.2:4236020-4236039 | MS.gene37319:CDS | 30.0% | |
| TATAAATGGCACTTGAATCA+TGG | + | chr7.2:4235274-4235293 | None:intergenic | 30.0% | |
| TCAAAATACAAAAACGAACC+TGG | + | chr7.2:4234059-4234078 | None:intergenic | 30.0% | |
| TCTCTCTCAATATGATGTTA+AGG | - | chr7.2:4234601-4234620 | MS.gene37319:CDS | 30.0% | |
| TCTGTTATGTTCATAGGAAT+TGG | - | chr7.2:4235878-4235897 | MS.gene37319:CDS | 30.0% | |
| TGTCACATGAATTGGAATAT+TGG | + | chr7.2:4234949-4234968 | None:intergenic | 30.0% | |
| TTAACCACATCAAAATAGTC+AGG | + | chr7.2:4235685-4235704 | None:intergenic | 30.0% | |
| TTATTATATCTGCAGATTCC+AGG | - | chr7.2:4234038-4234057 | MS.gene37319:intron | 30.0% | |
| TTTGAGTGGACACAATAATT+TGG | - | chr7.2:4235398-4235417 | MS.gene37319:intron | 30.0% | |
| TTTGGATTTATGTTGGGATT+TGG | + | chr7.2:4235734-4235753 | None:intergenic | 30.0% | |
| ! | CATTTTCCTTTAACAAGATG+TGG | - | chr7.2:4234634-4234653 | MS.gene37319:CDS | 30.0% |
| !!! | AAAAAGTTCAAAGGCACTTT+TGG | - | chr7.2:4234339-4234358 | MS.gene37319:intron | 30.0% |
| !!! | AACATATAGGAAGTTTTGAG+TGG | - | chr7.2:4235384-4235403 | MS.gene37319:intron | 30.0% |
| !!! | TTCTTTTTTGGATATGAAGG+GGG | - | chr7.2:4234769-4234788 | MS.gene37319:intron | 30.0% |
| AAATCCGAACATGTTCATAG+AGG | - | chr7.2:4235785-4235804 | MS.gene37319:CDS | 35.0% | |
| AGATATCAGGAAAACCATGA+AGG | + | chr7.2:4233684-4233703 | None:intergenic | 35.0% | |
| AGTTCCTCTATGAACATGTT+CGG | + | chr7.2:4235792-4235811 | None:intergenic | 35.0% | |
| ATGAGATAACAAGCCTTCTT+TGG | + | chr7.2:4235070-4235089 | None:intergenic | 35.0% | |
| CAATACCCACATCTTGTTAA+AGG | + | chr7.2:4234643-4234662 | None:intergenic | 35.0% | |
| GAACATGTTCGGATTTATGT+TGG | + | chr7.2:4235781-4235800 | None:intergenic | 35.0% | |
| GAGAGAGAGAAAATTAAGAG+TGG | + | chr7.2:4234589-4234608 | None:intergenic | 35.0% | |
| GATTGTTCAGACTTCAAACT+TGG | - | chr7.2:4235598-4235617 | MS.gene37319:intron | 35.0% | |
| TCTTACTAACAACTGTTCTG+AGG | + | chr7.2:4234469-4234488 | None:intergenic | 35.0% | |
| TGAGATAACAAGCCTTCTTT+GGG | + | chr7.2:4235069-4235088 | None:intergenic | 35.0% | |
| TGGAAGTGAGTTACAATCTA+TGG | - | chr7.2:4234531-4234550 | MS.gene37319:CDS | 35.0% | |
| TTCGGATTTATGTTGGGATT+TGG | + | chr7.2:4235774-4235793 | None:intergenic | 35.0% | |
| TTGCATAAACCAAAAGAAGG+AGG | + | chr7.2:4234252-4234271 | None:intergenic | 35.0% | |
| TTTGGAGGAAGTGATTATAC+AGG | - | chr7.2:4236038-4236057 | MS.gene37319:CDS | 35.0% | |
| ! | ACACTTTTACCTCCTTCTTT+TGG | - | chr7.2:4234240-4234259 | MS.gene37319:intron | 35.0% |
| ! | GGCTTTGTATTTGAAACATC+GGG | + | chr7.2:4235093-4235112 | None:intergenic | 35.0% |
| ! | GGGCTTTGTATTTGAAACAT+CGG | + | chr7.2:4235094-4235113 | None:intergenic | 35.0% |
| ! | TACACGATTTTGCATTTGGT+TGG | - | chr7.2:4233814-4233833 | MS.gene37319:CDS | 35.0% |
| ! | TAGCTACACGATTTTGCATT+TGG | - | chr7.2:4233810-4233829 | MS.gene37319:CDS | 35.0% |
| ! | TATTGTTGTTACTCATGCTG+AGG | - | chr7.2:4234658-4234677 | MS.gene37319:CDS | 35.0% |
| ! | TTCATGGTTTTCCTGATATC+TGG | - | chr7.2:4233683-4233702 | MS.gene37319:CDS | 35.0% |
| !! | AGTCAGGTTGGATTAAGTTT+GGG | + | chr7.2:4235669-4235688 | None:intergenic | 35.0% |
| !! | TAGTCAGGTTGGATTAAGTT+TGG | + | chr7.2:4235670-4235689 | None:intergenic | 35.0% |
| AAAATGCATGTCGCAGAGAA+AGG | - | chr7.2:4233634-4233653 | MS.gene37319:CDS | 40.0% | |
| AATTCATGTGACAGGAACCA+GGG | - | chr7.2:4234956-4234975 | MS.gene37319:intron | 40.0% | |
| ACATAAGCCTTGACTTTCTC+AGG | + | chr7.2:4233940-4233959 | None:intergenic | 40.0% | |
| AGTGATTATACAGGAAGGTG+TGG | - | chr7.2:4236047-4236066 | MS.gene37319:CDS | 40.0% | |
| ATAACAAGCCTTCTTTGGGT+AGG | + | chr7.2:4235065-4235084 | None:intergenic | 40.0% | |
| CATCAACAGGTTTCACTTTG+GGG | + | chr7.2:4233993-4234012 | None:intergenic | 40.0% | |
| CATGAGCCACAAGGAAAATT+TGG | + | chr7.2:4233876-4233895 | None:intergenic | 40.0% | |
| CCACATCAAAATAGTCAGGT+TGG | + | chr7.2:4235681-4235700 | None:intergenic | 40.0% | |
| CCATCAACAGGTTTCACTTT+GGG | + | chr7.2:4233994-4234013 | None:intergenic | 40.0% | |
| CCATGAAGGAACAAAACAAC+AGG | + | chr7.2:4233670-4233689 | None:intergenic | 40.0% | |
| CCATTAATCCTACCCAAAGA+AGG | - | chr7.2:4235054-4235073 | MS.gene37319:intron | 40.0% | |
| CCTTCTTTGGGTAGGATTAA+TGG | + | chr7.2:4235057-4235076 | None:intergenic | 40.0% | |
| CTTCACTGGAACTTTAACCT+TGG | + | chr7.2:4235929-4235948 | None:intergenic | 40.0% | |
| GAAAGATGTGCCAAATTTGG+AGG | - | chr7.2:4236023-4236042 | MS.gene37319:CDS | 40.0% | |
| GAGGAAGTGATTATACAGGA+AGG | - | chr7.2:4236042-4236061 | MS.gene37319:CDS | 40.0% | |
| GTGTAGCTACTAACTGAAGT+GGG | + | chr7.2:4233799-4233818 | None:intergenic | 40.0% | |
| TGCTGAGGTTACACTAATCA+AGG | - | chr7.2:4234673-4234692 | MS.gene37319:CDS | 40.0% | |
| TTCCTGATATCTGGTACTCT+TGG | - | chr7.2:4233692-4233711 | MS.gene37319:CDS | 40.0% | |
| TTTCCTTGTGGCTCATGATT+GGG | - | chr7.2:4233879-4233898 | MS.gene37319:intron | 40.0% | |
| ! | ATAGCCTTGATCACAAGTTC+TGG | + | chr7.2:4235012-4235031 | None:intergenic | 40.0% |
| ! | GTTGCTCTAATTGACTCACT+TGG | - | chr7.2:4233844-4233863 | MS.gene37319:intron | 40.0% |
| ! | TAGCCTTGATCACAAGTTCT+GGG | + | chr7.2:4235011-4235030 | None:intergenic | 40.0% |
| ! | TCTAATTGACTCACTTGGTG+TGG | - | chr7.2:4233849-4233868 | MS.gene37319:intron | 40.0% |
| ! | TGTGGACCAAATTTTCCTTG+TGG | - | chr7.2:4233867-4233886 | MS.gene37319:intron | 40.0% |
| ! | TTGGGGTTTCTTGGTAACAA+CGG | + | chr7.2:4233976-4233995 | None:intergenic | 40.0% |
| ! | TTTTCCTTGTGGCTCATGAT+TGG | - | chr7.2:4233878-4233897 | MS.gene37319:intron | 40.0% |
| !!! | CCAACCTGACTATTTTGATG+TGG | - | chr7.2:4235678-4235697 | MS.gene37319:CDS | 40.0% |
| !!! | CCTGTTGTTTTGTTCCTTCA+TGG | - | chr7.2:4233667-4233686 | MS.gene37319:CDS | 40.0% |
| AAAGCTTGCATGCCATCAAC+AGG | + | chr7.2:4234006-4234025 | None:intergenic | 45.0% | |
| AAGCAATACATCGAGAGTGG+TGG | - | chr7.2:4235994-4236013 | MS.gene37319:CDS | 45.0% | |
| ACAGAGATGCCAACCAATGA+TGG | + | chr7.2:4233908-4233927 | None:intergenic | 45.0% | |
| ATGCTTACAGGTCGGAATTC+TGG | - | chr7.2:4235030-4235049 | MS.gene37319:intron | 45.0% | |
| CAATTCATGTGACAGGAACC+AGG | - | chr7.2:4234955-4234974 | MS.gene37319:intron | 45.0% | |
| CACAGAACAGTGGAAGTGAA+TGG | - | chr7.2:4233607-4233626 | MS.gene37319:CDS | 45.0% | |
| CCCAAAGTGAAACCTGTTGA+TGG | - | chr7.2:4233991-4234010 | MS.gene37319:intron | 45.0% | |
| CGTGTAGCTACTAACTGAAG+TGG | + | chr7.2:4233800-4233819 | None:intergenic | 45.0% | |
| CTGGTTCCTGTCACATGAAT+TGG | + | chr7.2:4234957-4234976 | None:intergenic | 45.0% | |
| CTTCTTGTGAGAGCCAAGAA+GGG | + | chr7.2:4235119-4235138 | None:intergenic | 45.0% | |
| GAAGTTCATCACAGGCGATT+TGG | - | chr7.2:4235945-4235964 | MS.gene37319:CDS | 45.0% | |
| GCCATCAACAGGTTTCACTT+TGG | + | chr7.2:4233995-4234014 | None:intergenic | 45.0% | |
| GGCACTTGAATCATGGACAA+GGG | + | chr7.2:4235267-4235286 | None:intergenic | 45.0% | |
| GTCGCAGAGAAAGGAAAAGA+AGG | - | chr7.2:4233643-4233662 | MS.gene37319:CDS | 45.0% | |
| GTGATCAAGGCTATGCTTAC+AGG | - | chr7.2:4235018-4235037 | MS.gene37319:intron | 45.0% | |
| GTTCCAGTGAAGTTCATCAC+AGG | - | chr7.2:4235937-4235956 | MS.gene37319:CDS | 45.0% | |
| GTTTCGTCCTGAGAAAGTCA+AGG | - | chr7.2:4233930-4233949 | MS.gene37319:intron | 45.0% | |
| TAACAACCAAGAAGCTGCTG+AGG | - | chr7.2:4236077-4236096 | MS.gene37319:CDS | 45.0% | |
| TAACTTCCTCAGCAGCTTCT+TGG | + | chr7.2:4236086-4236105 | None:intergenic | 45.0% | |
| TAGCCCAGAACTTGTGATCA+AGG | - | chr7.2:4235005-4235024 | MS.gene37319:intron | 45.0% | |
| TCAAGGCTATGCTTACAGGT+CGG | - | chr7.2:4235022-4235041 | MS.gene37319:intron | 45.0% | |
| TCTTCTTGTGAGAGCCAAGA+AGG | + | chr7.2:4235120-4235139 | None:intergenic | 45.0% | |
| TGCTTACAGGTCGGAATTCT+GGG | - | chr7.2:4235031-4235050 | MS.gene37319:intron | 45.0% | |
| TGGAACTTTAACCTTGGCTC+CGG | + | chr7.2:4235923-4235942 | None:intergenic | 45.0% | |
| TGGCACTTGAATCATGGACA+AGG | + | chr7.2:4235268-4235287 | None:intergenic | 45.0% | |
| TTCCTTGTGGCTCATGATTG+GGG | - | chr7.2:4233880-4233899 | MS.gene37319:intron | 45.0% | |
| TTTGAAAAGTCGGGGTTCAG+TGG | - | chr7.2:4235162-4235181 | MS.gene37319:intron | 45.0% | |
| ! | ACTAACTGAAGTGGGAGCAT+CGG | + | chr7.2:4233791-4233810 | None:intergenic | 45.0% |
| ! | CAGGTTGGATTAAGTTTGGG+TGG | + | chr7.2:4235666-4235685 | None:intergenic | 45.0% |
| ! | TTGGTAACAACGGAACACTG+AGG | + | chr7.2:4233966-4233985 | None:intergenic | 45.0% |
| !! | GATGGCATGCAAGCTTTGTT+TGG | - | chr7.2:4234009-4234028 | MS.gene37319:intron | 45.0% |
| !! | GGATATGAAGGGGGTATTTG+AGG | - | chr7.2:4234778-4234797 | MS.gene37319:intron | 45.0% |
| !! | GGTTTCACTTTGGGGTTTCT+TGG | + | chr7.2:4233985-4234004 | None:intergenic | 45.0% |
| !!! | ATAAATTGTTTTTTTTAATA+TGG | + | chr7.2:4234493-4234512 | None:intergenic | 5.0% |
| !!! | TAAATTGTTTTTTTTAATAT+GGG | + | chr7.2:4234492-4234511 | None:intergenic | 5.0% |
| AATTCGGCTTCTGCTTTCCC+TGG | + | chr7.2:4234976-4234995 | None:intergenic | 50.0% | |
| AGCAGAAGCCGAATTTGCCA+AGG | - | chr7.2:4234981-4235000 | MS.gene37319:intron | 50.0% | |
| AGGAGTAGAGCACAGAACAG+TGG | - | chr7.2:4233597-4233616 | MS.gene37319:CDS | 50.0% | |
| ATACAAAGCCCCTCCCTTCT+TGG | - | chr7.2:4235103-4235122 | MS.gene37319:intron | 50.0% | |
| GCAGAAGCCGAATTTGCCAA+GGG | - | chr7.2:4234982-4235001 | MS.gene37319:intron | 50.0% | |
| GCGAAGCAATACATCGAGAG+TGG | - | chr7.2:4235991-4236010 | MS.gene37319:CDS | 50.0% | |
| TCGCCTGTGATGAACTTCAC+TGG | + | chr7.2:4235943-4235962 | None:intergenic | 50.0% | |
| TGGGCTACCCTTGGCAAATT+CGG | + | chr7.2:4234992-4235011 | None:intergenic | 50.0% | |
| TTGTGAGAGCCAAGAAGGGA+GGG | + | chr7.2:4235115-4235134 | None:intergenic | 50.0% | |
| ! | ATTGGGGTGCCATCATTGGT+TGG | - | chr7.2:4233896-4233915 | MS.gene37319:intron | 50.0% |
| ! | CATGATTGGGGTGCCATCAT+TGG | - | chr7.2:4233892-4233911 | MS.gene37319:intron | 50.0% |
| ! | GAAGATCTGGAGCAACAGCA+CGG | + | chr7.2:4233753-4233772 | None:intergenic | 50.0% |
| !! | CGCCAAGAGTACCAGATATC+AGG | + | chr7.2:4233697-4233716 | None:intergenic | 50.0% |
| ATTGGGAGCTCACAGCAGCA+TGG | - | chr7.2:4235896-4235915 | MS.gene37319:CDS | 55.0% | |
| CACCCCAATCATGAGCCACA+AGG | + | chr7.2:4233885-4233904 | None:intergenic | 55.0% | |
| CTTGTGAGAGCCAAGAAGGG+AGG | + | chr7.2:4235116-4235135 | None:intergenic | 55.0% | |
| GAAAAGTCGGGGTTCAGTGG+TGG | - | chr7.2:4235165-4235184 | MS.gene37319:intron | 55.0% | |
| GCTCCAGATCTTCGTGGCTA+CGG | - | chr7.2:4233760-4233779 | MS.gene37319:CDS | 55.0% | |
| GCTGTTGCTCCAGATCTTCG+TGG | - | chr7.2:4233754-4233773 | MS.gene37319:CDS | 55.0% | |
| TCACCGTAGCCACGAAGATC+TGG | + | chr7.2:4233766-4233785 | None:intergenic | 55.0% | |
| TGTGAGAGCCAAGAAGGGAG+GGG | + | chr7.2:4235114-4235133 | None:intergenic | 55.0% | |
| !! | CACAAGTTCTGGGCTACCCT+TGG | + | chr7.2:4235001-4235020 | None:intergenic | 55.0% |
| ATTGCGGCTCTCGGCTCTCT+CGG | - | chr7.2:4233724-4233743 | MS.gene37319:CDS | 60.0% | |
| CTCTTGGCGCCACCAGATTG+CGG | - | chr7.2:4233708-4233727 | MS.gene37319:CDS | 60.0% | |
| GAGCTCACAGCAGCATGGAC+CGG | - | chr7.2:4235901-4235920 | MS.gene37319:CDS | 60.0% | |
| AGCAGCATGGACCGGAGCCA+AGG | - | chr7.2:4235909-4235928 | MS.gene37319:CDS | 65.0% | |
| AGCCGAGAGCCGCAATCTGG+TGG | + | chr7.2:4233720-4233739 | None:intergenic | 65.0% | |
| CGCCACCAGATTGCGGCTCT+CGG | - | chr7.2:4233715-4233734 | MS.gene37319:CDS | 65.0% | |
| GAGAGCCGAGAGCCGCAATC+TGG | + | chr7.2:4233723-4233742 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 4233592 | 4236140 | 4233592 | ID=MS.gene37319 |
| chr7.2 | mRNA | 4233592 | 4236140 | 4233592 | ID=MS.gene37319.t1;Parent=MS.gene37319 |
| chr7.2 | exon | 4235673 | 4236140 | 4235673 | ID=MS.gene37319.t1.exon1;Parent=MS.gene37319.t1 |
| chr7.2 | CDS | 4235673 | 4236140 | 4235673 | ID=cds.MS.gene37319.t1;Parent=MS.gene37319.t1 |
| chr7.2 | exon | 4234518 | 4234762 | 4234518 | ID=MS.gene37319.t1.exon2;Parent=MS.gene37319.t1 |
| chr7.2 | CDS | 4234518 | 4234762 | 4234518 | ID=cds.MS.gene37319.t1;Parent=MS.gene37319.t1 |
| chr7.2 | exon | 4233592 | 4233838 | 4233592 | ID=MS.gene37319.t1.exon3;Parent=MS.gene37319.t1 |
| chr7.2 | CDS | 4233592 | 4233838 | 4233592 | ID=cds.MS.gene37319.t1;Parent=MS.gene37319.t1 |
| Gene Sequence |
| Protein sequence |
