Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37323.t1 | RHN49252.1 | 95.9 | 319 | 13 | 0 | 1 | 319 | 31 | 349 | 1.70E-183 | 651.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37323.t1 | I6YGS0 | 34.2 | 319 | 192 | 6 | 7 | 316 | 7 | 316 | 1.2e-52 | 208.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37323.t1 | A2Q324 | 95.9 | 319 | 13 | 0 | 1 | 319 | 1 | 319 | 1.2e-183 | 651.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050928 | MS.gene37323 | 0.917841 | 3.25E-86 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene37323 | MS.gene071500 | PPI |
| MS.gene76453 | MS.gene37323 | PPI |
| MS.gene37323 | MS.gene041604 | PPI |
| MS.gene025707 | MS.gene37323 | PPI |
| MS.gene035373 | MS.gene37323 | PPI |
| MS.gene37323 | MS.gene22955 | PPI |
| MS.gene035371 | MS.gene37323 | PPI |
| MS.gene77823 | MS.gene37323 | PPI |
| MS.gene035367 | MS.gene37323 | PPI |
| MS.gene071504 | MS.gene37323 | PPI |
| MS.gene012063 | MS.gene37323 | PPI |
| MS.gene071502 | MS.gene37323 | PPI |
| MS.gene066360 | MS.gene37323 | PPI |
| MS.gene89620 | MS.gene37323 | PPI |
| MS.gene07001 | MS.gene37323 | PPI |
| MS.gene066361 | MS.gene37323 | PPI |
| MS.gene035369 | MS.gene37323 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37323.t1 | MTR_7g113050 | 95.925 | 319 | 13 | 0 | 1 | 319 | 1 | 319 | 0.0 | 643 |
| MS.gene37323.t1 | MTR_7g113030 | 94.044 | 319 | 19 | 0 | 1 | 319 | 1 | 319 | 0.0 | 632 |
| MS.gene37323.t1 | MTR_7g112615 | 92.790 | 319 | 23 | 0 | 1 | 319 | 1 | 319 | 0.0 | 624 |
| MS.gene37323.t1 | MTR_7g112620 | 90.596 | 319 | 30 | 0 | 1 | 319 | 1 | 319 | 0.0 | 611 |
| MS.gene37323.t1 | MTR_7g113020 | 87.774 | 319 | 39 | 0 | 1 | 319 | 1 | 319 | 0.0 | 598 |
| MS.gene37323.t1 | MTR_7g112960 | 76.636 | 321 | 71 | 2 | 1 | 319 | 1 | 319 | 0.0 | 520 |
| MS.gene37323.t1 | MTR_7g112963 | 76.636 | 321 | 71 | 2 | 1 | 319 | 1 | 319 | 0.0 | 516 |
| MS.gene37323.t1 | MTR_7g112970 | 75.235 | 319 | 76 | 2 | 1 | 319 | 1 | 316 | 0.0 | 510 |
| MS.gene37323.t1 | MTR_4g005160 | 72.755 | 323 | 83 | 3 | 1 | 319 | 1 | 322 | 0.0 | 506 |
| MS.gene37323.t1 | MTR_7g113050 | 94.958 | 238 | 12 | 0 | 1 | 238 | 1 | 238 | 6.12e-173 | 479 |
| MS.gene37323.t1 | MTR_7g112615 | 92.857 | 238 | 17 | 0 | 1 | 238 | 1 | 238 | 5.59e-169 | 469 |
| MS.gene37323.t1 | MTR_7g113010 | 71.025 | 283 | 78 | 2 | 1 | 281 | 1 | 281 | 2.78e-150 | 434 |
| MS.gene37323.t1 | MTR_4g120240 | 60.436 | 321 | 123 | 3 | 1 | 319 | 37 | 355 | 4.39e-145 | 413 |
| MS.gene37323.t1 | MTR_7g108825 | 61.442 | 319 | 121 | 2 | 1 | 319 | 1 | 317 | 3.40e-143 | 407 |
| MS.gene37323.t1 | MTR_7g112615 | 94.340 | 159 | 9 | 0 | 1 | 159 | 1 | 159 | 2.27e-109 | 315 |
| MS.gene37323.t1 | MTR_8g076680 | 48.276 | 319 | 161 | 3 | 1 | 319 | 3 | 317 | 2.43e-107 | 316 |
| MS.gene37323.t1 | MTR_7g108825 | 60.504 | 238 | 92 | 2 | 1 | 238 | 1 | 236 | 2.81e-100 | 295 |
| MS.gene37323.t1 | MTR_7g112910 | 59.438 | 249 | 46 | 5 | 72 | 319 | 1 | 195 | 1.46e-93 | 276 |
| MS.gene37323.t1 | MTR_1g083480 | 77.987 | 159 | 31 | 2 | 1 | 156 | 1 | 158 | 6.19e-89 | 263 |
| MS.gene37323.t1 | MTR_8g076680 | 49.580 | 238 | 118 | 2 | 1 | 238 | 3 | 238 | 3.72e-82 | 249 |
| MS.gene37323.t1 | MTR_2g090240 | 37.072 | 321 | 188 | 6 | 1 | 318 | 1 | 310 | 1.17e-66 | 211 |
| MS.gene37323.t1 | MTR_4g089060 | 37.695 | 321 | 185 | 6 | 1 | 318 | 1 | 309 | 2.27e-64 | 206 |
| MS.gene37323.t1 | MTR_2g090245 | 36.449 | 321 | 190 | 7 | 1 | 318 | 1 | 310 | 5.22e-64 | 205 |
| MS.gene37323.t1 | MTR_4g089040 | 37.695 | 321 | 185 | 6 | 1 | 318 | 1 | 309 | 9.41e-64 | 204 |
| MS.gene37323.t1 | MTR_3g024250 | 84.906 | 106 | 16 | 0 | 47 | 152 | 2 | 107 | 4.53e-62 | 194 |
| MS.gene37323.t1 | MTR_4g089060 | 35.057 | 348 | 184 | 7 | 1 | 318 | 1 | 336 | 1.77e-59 | 194 |
| MS.gene37323.t1 | MTR_4g089060 | 39.914 | 233 | 131 | 3 | 1 | 231 | 1 | 226 | 3.60e-53 | 174 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37323.t1 | AT3G05600 | 60.494 | 324 | 123 | 4 | 1 | 319 | 1 | 324 | 2.71e-149 | 422 |
| MS.gene37323.t1 | AT4G02340 | 58.255 | 321 | 127 | 4 | 1 | 319 | 1 | 316 | 1.10e-139 | 398 |
| MS.gene37323.t1 | AT2G26740 | 60.870 | 322 | 119 | 4 | 4 | 319 | 1 | 321 | 2.70e-130 | 374 |
| MS.gene37323.t1 | AT4G15960 | 53.846 | 325 | 143 | 3 | 1 | 319 | 51 | 374 | 4.02e-127 | 368 |
| MS.gene37323.t1 | AT2G26750 | 58.879 | 321 | 126 | 4 | 4 | 319 | 1 | 320 | 1.33e-125 | 362 |
| MS.gene37323.t1 | AT4G15955 | 50.613 | 326 | 123 | 4 | 5 | 319 | 6 | 304 | 1.67e-110 | 323 |
| MS.gene37323.t1 | AT3G05600 | 61.317 | 243 | 89 | 4 | 1 | 238 | 1 | 243 | 5.48e-109 | 317 |
| MS.gene37323.t1 | AT3G51000 | 47.095 | 327 | 152 | 6 | 3 | 319 | 4 | 319 | 2.00e-103 | 306 |
| MS.gene37323.t1 | AT4G15955 | 59.770 | 174 | 60 | 2 | 5 | 168 | 6 | 179 | 1.32e-71 | 220 |
| MS.gene37323.t1 | AT4G15955 | 60.606 | 165 | 55 | 2 | 5 | 159 | 6 | 170 | 8.22e-68 | 210 |
Find 88 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATAGGCTTTGATTCTTTC+AGG | 0.119767 | 7.2:+4260123 | None:intergenic |
| GGCATCAACGGTCTTGATTT+TGG | 0.153935 | 7.2:+4260068 | None:intergenic |
| GGTAAGGTGTCAGGAGTATC+TGG | 0.233107 | 7.2:+4259278 | None:intergenic |
| TTATTATATCTGTAGATTTC+AGG | 0.251191 | 7.2:-4260022 | MS.gene37323:intron |
| TTGGGGTTTCTACGCATTAA+TGG | 0.262210 | 7.2:+4260087 | None:intergenic |
| GAAATTCATTACAGGTGATT+TGG | 0.277422 | 7.2:-4258777 | MS.gene37323:CDS |
| TACTCTCCCTTGGGAAATAT+TGG | 0.280214 | 7.2:+4259317 | None:intergenic |
| CATTACAGGTGATTTGGATA+TGG | 0.296487 | 7.2:-4258771 | MS.gene37323:CDS |
| TTTGAGAAAACAGGCTTCAT+TGG | 0.303198 | 7.2:-4259212 | MS.gene37323:CDS |
| TGTTTCTTGTTGGTCATGAT+TGG | 0.327627 | 7.2:-4260182 | MS.gene37323:CDS |
| CACAGAACAGTGGAAGTAAA+TGG | 0.328559 | 7.2:-4260453 | MS.gene37323:CDS |
| AGCTGATGGCACCATGGAAT+GGG | 0.338259 | 7.2:-4258820 | MS.gene37323:CDS |
| ATATTTCCCAAGGGAGAGTA+TGG | 0.351665 | 7.2:-4259314 | MS.gene37323:CDS |
| GTCTCCAAATTTGAGAAAAC+AGG | 0.355343 | 7.2:-4259221 | MS.gene37323:CDS |
| GATAATCACTTCTTCCAGAT+TGG | 0.362380 | 7.2:+4258688 | None:intergenic |
| GATGCCATGCGTGCTGCTTA+TGG | 0.370336 | 7.2:-4260051 | MS.gene37323:CDS |
| ATCCTGACAACTCGGAAAAC+TGG | 0.375136 | 7.2:-4259344 | MS.gene37323:CDS |
| CGCCAAGAGTACCAGAGTTC+AGG | 0.381681 | 7.2:+4260366 | None:intergenic |
| GTTTCTTGTTGGTCATGATT+GGG | 0.381777 | 7.2:-4260181 | MS.gene37323:CDS |
| AGCCAAGAGGGTAAGGTGTC+AGG | 0.390169 | 7.2:+4259269 | None:intergenic |
| CATGATTGGGGTGCTATCAT+TGG | 0.391157 | 7.2:-4260168 | MS.gene37323:CDS |
| GAGAGCCGAGCGCCGCAATC+TGG | 0.391586 | 7.2:+4260340 | None:intergenic |
| CGCCACCAGATTGCGGCGCT+CGG | 0.393265 | 7.2:-4260345 | MS.gene37323:CDS |
| GTCGATCAAGTGTTTCTTGT+TGG | 0.393553 | 7.2:-4260192 | MS.gene37323:CDS |
| ATCGCAGAAACCGGGCGAAA+TGG | 0.400152 | 7.2:-4259411 | MS.gene37323:intron |
| GAAGAAGTGATTATCCAAAA+AGG | 0.403789 | 7.2:-4258680 | MS.gene37323:CDS |
| CTCCTGACACCTTACCCTCT+TGG | 0.407073 | 7.2:-4259271 | MS.gene37323:CDS |
| TCACCATAGCCACGCAGATC+TGG | 0.413961 | 7.2:+4260297 | None:intergenic |
| TTACTTGTATTGCAGAAATT+GGG | 0.423076 | 7.2:-4258843 | MS.gene37323:intron |
| CCTGTTGTCCTGTTCCTTCA+CGG | 0.424309 | 7.2:-4260393 | MS.gene37323:CDS |
| GTGCCTGTGAAATTCATTAC+AGG | 0.432209 | 7.2:-4258785 | MS.gene37323:CDS |
| CATAGGCTTTGATTCTTTCA+GGG | 0.432762 | 7.2:+4260124 | None:intergenic |
| CAAGGAAGATGTGCCCAATC+TGG | 0.434486 | 7.2:-4258702 | MS.gene37323:CDS |
| TTCCTGAACTCTGGTACTCT+TGG | 0.435109 | 7.2:-4260368 | MS.gene37323:CDS |
| CCCAAGGGAGAGTATGGAAC+TGG | 0.436868 | 7.2:-4259308 | MS.gene37323:CDS |
| ATAATCACTTCTTCCAGATT+GGG | 0.447163 | 7.2:+4258689 | None:intergenic |
| ATTGCGGCGCTCGGCTCTCT+CGG | 0.459514 | 7.2:-4260336 | MS.gene37323:CDS |
| CAGGAAAGCCGTGAAGGAAC+AGG | 0.460850 | 7.2:+4260385 | None:intergenic |
| GAGCTGATGGCACCATGGAA+TGG | 0.461653 | 7.2:-4258821 | MS.gene37323:CDS |
| TCCAGTTCCATACTCTCCCT+TGG | 0.463729 | 7.2:+4259307 | None:intergenic |
| TTCTGTAAGCCAAGAGGGTA+AGG | 0.471828 | 7.2:+4259262 | None:intergenic |
| CCGTGAAGGAACAGGACAAC+AGG | 0.481846 | 7.2:+4260393 | None:intergenic |
| GCTCCAGATCTGCGTGGCTA+TGG | 0.482806 | 7.2:-4260300 | MS.gene37323:CDS |
| AAAATGCATATTGCTGAGAA+AGG | 0.485302 | 7.2:-4260426 | MS.gene37323:CDS |
| ATCTGAGCTTCCATTTCGCC+CGG | 0.491141 | 7.2:+4259401 | None:intergenic |
| TTCACGGCTTTCCTGAACTC+TGG | 0.502205 | 7.2:-4260377 | MS.gene37323:CDS |
| CCAGTTCCATACTCTCCCTT+GGG | 0.508775 | 7.2:+4259308 | None:intergenic |
| AGCCGAGCGCCGCAATCTGG+TGG | 0.510220 | 7.2:+4260343 | None:intergenic |
| GGGCGAAATGGAAGCTCAGA+TGG | 0.525021 | 7.2:-4259399 | MS.gene37323:CDS |
| ATGGAATGGGGTGAAAATCA+AGG | 0.540835 | 7.2:-4258807 | MS.gene37323:CDS |
| GAAGCTCAGATGGCTGAAGT+TGG | 0.542944 | 7.2:-4259389 | MS.gene37323:CDS |
| TCTCCCTTGGGAAATATTGG+AGG | 0.546141 | 7.2:+4259320 | None:intergenic |
| GTTGCACTTATAGATTTGCT+CGG | 0.548076 | 7.2:-4260216 | MS.gene37323:CDS |
| ATTGCTGAGAAAGGAAAAGA+AGG | 0.548522 | 7.2:-4260417 | MS.gene37323:CDS |
| TTATCTTTATCGCAGAAACC+GGG | 0.558593 | 7.2:-4259419 | MS.gene37323:intron |
| AAAAGAAACAGAGAGATGGA+AGG | 0.558993 | 7.2:-4260483 | None:intergenic |
| TTTCTTGTTGGTCATGATTG+GGG | 0.559325 | 7.2:-4260180 | MS.gene37323:CDS |
| GTGTAGCTACTAACTGAAGA+TGG | 0.564708 | 7.2:+4260264 | None:intergenic |
| CTCTTGGCGCCACCAGATTG+CGG | 0.567094 | 7.2:-4260352 | MS.gene37323:CDS |
| ATTGGGGTGCTATCATTGGT+TGG | 0.568173 | 7.2:-4260164 | MS.gene37323:CDS |
| TCACCTGTAATGAATTTCAC+AGG | 0.570947 | 7.2:+4258782 | None:intergenic |
| TCTTCAGTTAGTAGCTACAC+AGG | 0.571639 | 7.2:-4260261 | MS.gene37323:CDS |
| ATCTCCATAAGCAGCACGCA+TGG | 0.574955 | 7.2:+4260047 | None:intergenic |
| TCATCTTCTGTAAGCCAAGA+GGG | 0.578236 | 7.2:+4259257 | None:intergenic |
| GAAGGAGTATATCCATGGTG+GGG | 0.578871 | 7.2:-4258729 | MS.gene37323:CDS |
| TGAAGGAGTATATCCATGGT+GGG | 0.583874 | 7.2:-4258730 | MS.gene37323:CDS |
| TGGTCCTCCAATATTTCCCA+AGG | 0.588717 | 7.2:-4259324 | MS.gene37323:CDS |
| TGGAACACTGAGACAAACAT+AGG | 0.590336 | 7.2:+4260107 | None:intergenic |
| GCCACGCAGATCTGGAGCAA+CGG | 0.594783 | 7.2:+4260305 | None:intergenic |
| AAGGAGTATATCCATGGTGG+GGG | 0.600787 | 7.2:-4258728 | MS.gene37323:CDS |
| AGCAGCACGCATGGCATCAA+CGG | 0.605048 | 7.2:+4260056 | None:intergenic |
| GTAAGGTGTCAGGAGTATCT+GGG | 0.606766 | 7.2:+4259279 | None:intergenic |
| TTGCAGAAATTGGGAGCTGA+TGG | 0.610067 | 7.2:-4258834 | MS.gene37323:intron |
| AACATGAAGGAGTATATCCA+TGG | 0.620148 | 7.2:-4258734 | MS.gene37323:CDS |
| TAACAATGAAGAAGCAGCAG+AGG | 0.620175 | 7.2:-4258645 | MS.gene37323:CDS |
| ATACTCCTTCATGTTTAGTG+AGG | 0.623538 | 7.2:+4258742 | None:intergenic |
| AGAGTTCAGGAAAGCCGTGA+AGG | 0.628117 | 7.2:+4260379 | None:intergenic |
| GCTGATGGCACCATGGAATG+GGG | 0.628565 | 7.2:-4258819 | MS.gene37323:CDS |
| ATTTGGAGACAAAATAAGCA+AGG | 0.634682 | 7.2:+4259234 | None:intergenic |
| ATGAAGGAGTATATCCATGG+TGG | 0.640343 | 7.2:-4258731 | MS.gene37323:CDS |
| ATTGGGAGCTGATGGCACCA+TGG | 0.649732 | 7.2:-4258826 | MS.gene37323:CDS |
| GTACACCTCACTAAACATGA+AGG | 0.657206 | 7.2:-4258747 | MS.gene37323:CDS |
| GTCATCTTCTGTAAGCCAAG+AGG | 0.661237 | 7.2:+4259256 | None:intergenic |
| AGGAATAGAACACAGAACAG+TGG | 0.676997 | 7.2:-4260463 | MS.gene37323:CDS |
| GCCGTTGCTCCAGATCTGCG+TGG | 0.702325 | 7.2:-4260306 | MS.gene37323:CDS |
| GGTCCTCCAATATTTCCCAA+GGG | 0.706108 | 7.2:-4259323 | MS.gene37323:CDS |
| GCAGATCTGGAGCAACGGCG+CGG | 0.714874 | 7.2:+4260310 | None:intergenic |
| GCAAATCTATAAGTGCAACA+AGG | 0.736275 | 7.2:+4260220 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAGAAATCTATAAAAAA+AGG | + | chr7.2:4259620-4259639 | None:intergenic | 10.0% |
| !!! | AATCATAATATTTTTTTAAG+GGG | - | chr7.2:4259362-4259381 | MS.gene37323:CDS | 10.0% |
| !!! | GAATCATAATATTTTTTTAA+GGG | - | chr7.2:4259361-4259380 | MS.gene37323:CDS | 10.0% |
| !!! | TGAATCATAATATTTTTTTA+AGG | - | chr7.2:4259360-4259379 | MS.gene37323:CDS | 10.0% |
| !! | AAAAAAAAAACACTTGATTA+AGG | - | chr7.2:4259208-4259227 | MS.gene37323:CDS | 15.0% |
| !!! | ATCAAGTGTTTTTTTTTTTA+AGG | + | chr7.2:4259206-4259225 | None:intergenic | 15.0% |
| !!! | CCAATAATAGTTTTAAAAAA+TGG | + | chr7.2:4260103-4260122 | None:intergenic | 15.0% |
| !!! | CCATTTTTTAAAACTATTAT+TGG | - | chr7.2:4260100-4260119 | MS.gene37323:CDS | 15.0% |
| !! | AATATTATGATTCAACCATA+AGG | + | chr7.2:4259354-4259373 | None:intergenic | 20.0% |
| !! | GATTTCTTAAAGTAAATTAG+GGG | + | chr7.2:4259113-4259132 | None:intergenic | 20.0% |
| !! | GGATTTCTTAAAGTAAATTA+GGG | + | chr7.2:4259114-4259133 | None:intergenic | 20.0% |
| !! | TTATTATATCTGTAGATTTC+AGG | - | chr7.2:4259050-4259069 | MS.gene37323:intron | 20.0% |
| !!! | AAGAAATCCCTAATATTTTA+TGG | - | chr7.2:4259125-4259144 | MS.gene37323:intron | 20.0% |
| !!! | AGAAATCCCTAATATTTTAT+GGG | - | chr7.2:4259126-4259145 | MS.gene37323:intron | 20.0% |
| !!! | TATATGTTGACAATTCTTTT+TGG | - | chr7.2:4259958-4259977 | MS.gene37323:intron | 20.0% |
| ! | AACTTGTCCCATAAAATATT+AGG | + | chr7.2:4259136-4259155 | None:intergenic | 25.0% |
| ! | AATGCATCTTTCATTAGAAT+TGG | + | chr7.2:4260208-4260227 | None:intergenic | 25.0% |
| ! | ACTTGTCCCATAAAATATTA+GGG | + | chr7.2:4259135-4259154 | None:intergenic | 25.0% |
| ! | ATATTTGTGGAAAACAACAA+AGG | + | chr7.2:4259941-4259960 | None:intergenic | 25.0% |
| ! | ATTACTTGTATTGCAGAAAT+TGG | - | chr7.2:4260228-4260247 | MS.gene37323:CDS | 25.0% |
| ! | GAATTGTCAACATATATTTG+TGG | + | chr7.2:4259954-4259973 | None:intergenic | 25.0% |
| ! | GGGATTTCTTAAAGTAAATT+AGG | + | chr7.2:4259115-4259134 | None:intergenic | 25.0% |
| ! | TGATTGAATATAACATGTGT+CGG | + | chr7.2:4260077-4260096 | None:intergenic | 25.0% |
| ! | TTACTTGTATTGCAGAAATT+GGG | - | chr7.2:4260229-4260248 | MS.gene37323:CDS | 25.0% |
| AAAATGCATATTGCTGAGAA+AGG | - | chr7.2:4258646-4258665 | MS.gene37323:CDS | 30.0% | |
| AACAACACTCAACACAAAAT+TGG | + | chr7.2:4260148-4260167 | None:intergenic | 30.0% | |
| AATCAAGTGTTAAACACACT+TGG | + | chr7.2:4259291-4259310 | None:intergenic | 30.0% | |
| ATAATCACTTCTTCCAGATT+GGG | + | chr7.2:4260386-4260405 | None:intergenic | 30.0% | |
| ATAGATCTCTATATCATGAG+AGG | - | chr7.2:4259425-4259444 | MS.gene37323:intron | 30.0% | |
| ATCAAGTGTTAAACACACTT+GGG | + | chr7.2:4259290-4259309 | None:intergenic | 30.0% | |
| ATCTATAAAAAAAGGCAACC+CGG | + | chr7.2:4259612-4259631 | None:intergenic | 30.0% | |
| ATTATCTTTATCGCAGAAAC+CGG | - | chr7.2:4259652-4259671 | MS.gene37323:intron | 30.0% | |
| ATTTGGAGACAAAATAAGCA+AGG | + | chr7.2:4259841-4259860 | None:intergenic | 30.0% | |
| CATACAATACACCAAATGAT+GGG | - | chr7.2:4259546-4259565 | MS.gene37323:intron | 30.0% | |
| GAAATTCATTACAGGTGATT+TGG | - | chr7.2:4260295-4260314 | MS.gene37323:CDS | 30.0% | |
| GAAGAAGTGATTATCCAAAA+AGG | - | chr7.2:4260392-4260411 | MS.gene37323:CDS | 30.0% | |
| TGAAAAATATCCTGACAACT+CGG | - | chr7.2:4259720-4259739 | MS.gene37323:intron | 30.0% | |
| ! | TACACAGGTTTTCATATAGT+GGG | - | chr7.2:4258826-4258845 | MS.gene37323:CDS | 30.0% |
| AGTCAAAAGAGGAAACCTTA+TGG | - | chr7.2:4259336-4259355 | MS.gene37323:CDS | 35.0% | |
| AGTGATTATCCAAAAAGGAG+TGG | - | chr7.2:4260397-4260416 | MS.gene37323:CDS | 35.0% | |
| AGTTGAGTCTAAGTCAAAAG+AGG | - | chr7.2:4259325-4259344 | MS.gene37323:CDS | 35.0% | |
| ATACTCCTTCATGTTTAGTG+AGG | + | chr7.2:4260333-4260352 | None:intergenic | 35.0% | |
| ATTGCTGAGAAAGGAAAAGA+AGG | - | chr7.2:4258655-4258674 | MS.gene37323:CDS | 35.0% | |
| GATAATCACTTCTTCCAGAT+TGG | + | chr7.2:4260387-4260406 | None:intergenic | 35.0% | |
| GCAAATCTATAAGTGCAACA+AGG | + | chr7.2:4258855-4258874 | None:intergenic | 35.0% | |
| GCATACAATACACCAAATGA+TGG | - | chr7.2:4259545-4259564 | MS.gene37323:intron | 35.0% | |
| GTCTCCAAATTTGAGAAAAC+AGG | - | chr7.2:4259851-4259870 | MS.gene37323:intron | 35.0% | |
| GTTTCTTGTTGGTCATGATT+GGG | - | chr7.2:4258891-4258910 | MS.gene37323:intron | 35.0% | |
| TATATCATGAGAGGTAACCT+TGG | - | chr7.2:4259434-4259453 | MS.gene37323:intron | 35.0% | |
| TATCAACACATATCGAACAC+CGG | + | chr7.2:4260047-4260066 | None:intergenic | 35.0% | |
| TCACCTGTAATGAATTTCAC+AGG | + | chr7.2:4260293-4260312 | None:intergenic | 35.0% | |
| TGTTTCTTGTTGGTCATGAT+TGG | - | chr7.2:4258890-4258909 | MS.gene37323:intron | 35.0% | |
| TTATCTTTATCGCAGAAACC+GGG | - | chr7.2:4259653-4259672 | MS.gene37323:intron | 35.0% | |
| TTTCTTGTTGGTCATGATTG+GGG | - | chr7.2:4258892-4258911 | MS.gene37323:intron | 35.0% | |
| TTTGAGAAAACAGGCTTCAT+TGG | - | chr7.2:4259860-4259879 | MS.gene37323:intron | 35.0% | |
| ! | AACATGAAGGAGTATATCCA+TGG | - | chr7.2:4260338-4260357 | MS.gene37323:CDS | 35.0% |
| ! | AATATAACATGTGTCGGTGT+CGG | + | chr7.2:4260071-4260090 | None:intergenic | 35.0% |
| ! | ACATAGGCTTTGATTCTTTC+AGG | + | chr7.2:4258952-4258971 | None:intergenic | 35.0% |
| ! | CATAGGCTTTGATTCTTTCA+GGG | + | chr7.2:4258951-4258970 | None:intergenic | 35.0% |
| ! | CATTACAGGTGATTTGGATA+TGG | - | chr7.2:4260301-4260320 | MS.gene37323:CDS | 35.0% |
| ! | CTACACAGGTTTTCATATAG+TGG | - | chr7.2:4258825-4258844 | MS.gene37323:CDS | 35.0% |
| ! | GAAGCCTGTTTTCTCAAATT+TGG | + | chr7.2:4259858-4259877 | None:intergenic | 35.0% |
| ! | GTTGCACTTATAGATTTGCT+CGG | - | chr7.2:4258856-4258875 | MS.gene37323:intron | 35.0% |
| !!! | CTTTTTTCATGTGTCGGTTT+CGG | + | chr7.2:4259263-4259282 | None:intergenic | 35.0% |
| !!! | GGTTTCCTTTTTTCATGTGT+CGG | + | chr7.2:4259269-4259288 | None:intergenic | 35.0% |
| AAAGCCTCTTGTGTGAAAAC+AGG | - | chr7.2:4259514-4259533 | MS.gene37323:intron | 40.0% | |
| AAGCCTCTTGTGTGAAAACA+GGG | - | chr7.2:4259515-4259534 | MS.gene37323:intron | 40.0% | |
| AGGAATAGAACACAGAACAG+TGG | - | chr7.2:4258609-4258628 | MS.gene37323:CDS | 40.0% | |
| ATATTTCCCAAGGGAGAGTA+TGG | - | chr7.2:4259758-4259777 | MS.gene37323:intron | 40.0% | |
| ATCAACACATATCGAACACC+GGG | + | chr7.2:4260046-4260065 | None:intergenic | 40.0% | |
| ATGGAATGGGGTGAAAATCA+AGG | - | chr7.2:4260265-4260284 | MS.gene37323:CDS | 40.0% | |
| CACAGAACAGTGGAAGTAAA+TGG | - | chr7.2:4258619-4258638 | MS.gene37323:CDS | 40.0% | |
| CGAAACCGACACATGAAAAA+AGG | - | chr7.2:4259261-4259280 | MS.gene37323:CDS | 40.0% | |
| GTACACCTCACTAAACATGA+AGG | - | chr7.2:4260325-4260344 | MS.gene37323:CDS | 40.0% | |
| GTCGATCAAGTGTTTCTTGT+TGG | - | chr7.2:4258880-4258899 | MS.gene37323:intron | 40.0% | |
| GTGCCTGTGAAATTCATTAC+AGG | - | chr7.2:4260287-4260306 | MS.gene37323:CDS | 40.0% | |
| GTGTAGCTACTAACTGAAGA+TGG | + | chr7.2:4258811-4258830 | None:intergenic | 40.0% | |
| GTTGTAGTCATGTGACTGAA+AGG | - | chr7.2:4259470-4259489 | MS.gene37323:intron | 40.0% | |
| TAACAATGAAGAAGCAGCAG+AGG | - | chr7.2:4260427-4260446 | MS.gene37323:CDS | 40.0% | |
| TACTCTCCCTTGGGAAATAT+TGG | + | chr7.2:4259758-4259777 | None:intergenic | 40.0% | |
| TCATCTTCTGTAAGCCAAGA+GGG | + | chr7.2:4259818-4259837 | None:intergenic | 40.0% | |
| TCTTCAGTTAGTAGCTACAC+AGG | - | chr7.2:4258811-4258830 | MS.gene37323:CDS | 40.0% | |
| TGGAACACTGAGACAAACAT+AGG | + | chr7.2:4258968-4258987 | None:intergenic | 40.0% | |
| TTGGGGTTTCTACGCATTAA+TGG | + | chr7.2:4258988-4259007 | None:intergenic | 40.0% | |
| TTTCAGTTTGAAGACATGCC+CGG | - | chr7.2:4260025-4260044 | MS.gene37323:CDS | 40.0% | |
| ! | ATGAAGGAGTATATCCATGG+TGG | - | chr7.2:4260341-4260360 | MS.gene37323:CDS | 40.0% |
| ! | CATCAACGGTCTTGATTTTG+GGG | + | chr7.2:4259005-4259024 | None:intergenic | 40.0% |
| ! | GCATCAACGGTCTTGATTTT+GGG | + | chr7.2:4259006-4259025 | None:intergenic | 40.0% |
| ! | TGAAGGAGTATATCCATGGT+GGG | - | chr7.2:4260342-4260361 | MS.gene37323:CDS | 40.0% |
| ! | TTACCCTGTTTTCACACAAG+AGG | + | chr7.2:4259521-4259540 | None:intergenic | 40.0% |
| ! | TTGATTTTCACCCCATTCCA+TGG | + | chr7.2:4260266-4260285 | None:intergenic | 40.0% |
| ACTAAAGCTCCTGCATACGA+AGG | + | chr7.2:4259586-4259605 | None:intergenic | 45.0% | |
| AGGGGTTACAGAGAGAAAAG+TGG | + | chr7.2:4259095-4259114 | None:intergenic | 45.0% | |
| ATCCTGACAACTCGGAAAAC+TGG | - | chr7.2:4259728-4259747 | MS.gene37323:intron | 45.0% | |
| CAACTTTATCAGTTGCGCCA+AGG | + | chr7.2:4259454-4259473 | None:intergenic | 45.0% | |
| CTAAAGCTCCTGCATACGAA+GGG | + | chr7.2:4259585-4259604 | None:intergenic | 45.0% | |
| GGTCCTCCAATATTTCCCAA+GGG | - | chr7.2:4259749-4259768 | MS.gene37323:intron | 45.0% | |
| GTCATCTTCTGTAAGCCAAG+AGG | + | chr7.2:4259819-4259838 | None:intergenic | 45.0% | |
| GTCATGTGACTGAAAGGTCA+CGG | - | chr7.2:4259476-4259495 | MS.gene37323:intron | 45.0% | |
| TCATGTGACTGAAAGGTCAC+GGG | - | chr7.2:4259477-4259496 | MS.gene37323:intron | 45.0% | |
| TCTCCCTTGGGAAATATTGG+AGG | + | chr7.2:4259755-4259774 | None:intergenic | 45.0% | |
| TGGTCCTCCAATATTTCCCA+AGG | - | chr7.2:4259748-4259767 | MS.gene37323:intron | 45.0% | |
| TTCCTGAACTCTGGTACTCT+TGG | - | chr7.2:4258704-4258723 | MS.gene37323:CDS | 45.0% | |
| TTCTGTAAGCCAAGAGGGTA+AGG | + | chr7.2:4259813-4259832 | None:intergenic | 45.0% | |
| TTGCAGAAATTGGGAGCTGA+TGG | - | chr7.2:4260238-4260257 | MS.gene37323:CDS | 45.0% | |
| ! | AAGGAGTATATCCATGGTGG+GGG | - | chr7.2:4260344-4260363 | MS.gene37323:CDS | 45.0% |
| ! | ATTGGGGTGCTATCATTGGT+TGG | - | chr7.2:4258908-4258927 | MS.gene37323:intron | 45.0% |
| ! | CATGATTGGGGTGCTATCAT+TGG | - | chr7.2:4258904-4258923 | MS.gene37323:intron | 45.0% |
| ! | GAAGGAGTATATCCATGGTG+GGG | - | chr7.2:4260343-4260362 | MS.gene37323:CDS | 45.0% |
| ! | GGCATCAACGGTCTTGATTT+TGG | + | chr7.2:4259007-4259026 | None:intergenic | 45.0% |
| ! | TAAAGTGCGCCACTCCTTTT+TGG | + | chr7.2:4260409-4260428 | None:intergenic | 45.0% |
| !! | GTAAGGTGTCAGGAGTATCT+GGG | + | chr7.2:4259796-4259815 | None:intergenic | 45.0% |
| !! | TCACACAAGAGGCTTTTTCC+AGG | + | chr7.2:4259510-4259529 | None:intergenic | 45.0% |
| AGAGTTCAGGAAAGCCGTGA+AGG | + | chr7.2:4258696-4258715 | None:intergenic | 50.0% | |
| AGCTGATGGCACCATGGAAT+GGG | - | chr7.2:4260252-4260271 | MS.gene37323:CDS | 50.0% | |
| ATCTCCATAAGCAGCACGCA+TGG | + | chr7.2:4259028-4259047 | None:intergenic | 50.0% | |
| ATCTGAGCTTCCATTTCGCC+CGG | + | chr7.2:4259674-4259693 | None:intergenic | 50.0% | |
| CAAGGAAGATGTGCCCAATC+TGG | - | chr7.2:4260370-4260389 | MS.gene37323:CDS | 50.0% | |
| CATACGAAGGGTCTGGAAAG+GGG | + | chr7.2:4259573-4259592 | None:intergenic | 50.0% | |
| CCAGTTCCATACTCTCCCTT+GGG | + | chr7.2:4259767-4259786 | None:intergenic | 50.0% | |
| CCTGTTGTCCTGTTCCTTCA+CGG | - | chr7.2:4258679-4258698 | MS.gene37323:CDS | 50.0% | |
| GAAGCTCAGATGGCTGAAGT+TGG | - | chr7.2:4259683-4259702 | MS.gene37323:intron | 50.0% | |
| GCATACGAAGGGTCTGGAAA+GGG | + | chr7.2:4259574-4259593 | None:intergenic | 50.0% | |
| TCCAGTTCCATACTCTCCCT+TGG | + | chr7.2:4259768-4259787 | None:intergenic | 50.0% | |
| TGCATACGAAGGGTCTGGAA+AGG | + | chr7.2:4259575-4259594 | None:intergenic | 50.0% | |
| TGGAAAGGGGTCCCATCATT+TGG | + | chr7.2:4259560-4259579 | None:intergenic | 50.0% | |
| TTCACGGCTTTCCTGAACTC+TGG | - | chr7.2:4258695-4258714 | MS.gene37323:CDS | 50.0% | |
| TTTCCAGACCCTTCGTATGC+AGG | - | chr7.2:4259574-4259593 | MS.gene37323:intron | 50.0% | |
| ! | ATGCAGGAGCTTTAGTGCAC+CGG | - | chr7.2:4259590-4259609 | MS.gene37323:intron | 50.0% |
| ! | GACCAGTTTTCCGAGTTGTC+AGG | + | chr7.2:4259733-4259752 | None:intergenic | 50.0% |
| ! | TATCCATGGTGGGGGATTCA+AGG | - | chr7.2:4260352-4260371 | MS.gene37323:CDS | 50.0% |
| !! | GGTAAGGTGTCAGGAGTATC+TGG | + | chr7.2:4259797-4259816 | None:intergenic | 50.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr7.2:4259489-4259508 | MS.gene37323:intron | 55.0% | |
| AGCAGCACGCATGGCATCAA+CGG | + | chr7.2:4259019-4259038 | None:intergenic | 55.0% | |
| ATCGCAGAAACCGGGCGAAA+TGG | - | chr7.2:4259661-4259680 | MS.gene37323:intron | 55.0% | |
| ATTGGGAGCTGATGGCACCA+TGG | - | chr7.2:4260246-4260265 | MS.gene37323:CDS | 55.0% | |
| CAGGAAAGCCGTGAAGGAAC+AGG | + | chr7.2:4258690-4258709 | None:intergenic | 55.0% | |
| CCGTGAAGGAACAGGACAAC+AGG | + | chr7.2:4258682-4258701 | None:intergenic | 55.0% | |
| CTCCTGACACCTTACCCTCT+TGG | - | chr7.2:4259801-4259820 | MS.gene37323:intron | 55.0% | |
| CTTCCTTGAATCCCCCACCA+TGG | + | chr7.2:4260358-4260377 | None:intergenic | 55.0% | |
| GAGCTGATGGCACCATGGAA+TGG | - | chr7.2:4260251-4260270 | MS.gene37323:CDS | 55.0% | |
| GCTGATGGCACCATGGAATG+GGG | - | chr7.2:4260253-4260272 | MS.gene37323:CDS | 55.0% | |
| GGGCGAAATGGAAGCTCAGA+TGG | - | chr7.2:4259673-4259692 | MS.gene37323:intron | 55.0% | |
| TCACCATAGCCACGCAGATC+TGG | + | chr7.2:4258778-4258797 | None:intergenic | 55.0% | |
| ! | AGCCAAGAGGGTAAGGTGTC+AGG | + | chr7.2:4259806-4259825 | None:intergenic | 55.0% |
| ! | CCCAAGGGAGAGTATGGAAC+TGG | - | chr7.2:4259764-4259783 | MS.gene37323:intron | 55.0% |
| ! | TGCAGGAGCTTTAGTGCACC+GGG | - | chr7.2:4259591-4259610 | MS.gene37323:intron | 55.0% |
| !! | CGCCAAGAGTACCAGAGTTC+AGG | + | chr7.2:4258709-4258728 | None:intergenic | 55.0% |
| !! | GATGCCATGCGTGCTGCTTA+TGG | - | chr7.2:4259021-4259040 | MS.gene37323:intron | 55.0% |
| CTCTTGGCGCCACCAGATTG+CGG | - | chr7.2:4258720-4258739 | MS.gene37323:CDS | 60.0% | |
| GCTCCAGATCTGCGTGGCTA+TGG | - | chr7.2:4258772-4258791 | MS.gene37323:CDS | 60.0% | |
| GCTCCTGCATACGAAGGGTC+TGG | + | chr7.2:4259580-4259599 | None:intergenic | 60.0% | |
| ! | GCCACGCAGATCTGGAGCAA+CGG | + | chr7.2:4258770-4258789 | None:intergenic | 60.0% |
| ATTGCGGCGCTCGGCTCTCT+CGG | - | chr7.2:4258736-4258755 | MS.gene37323:CDS | 65.0% | |
| GCCGTTGCTCCAGATCTGCG+TGG | - | chr7.2:4258766-4258785 | MS.gene37323:CDS | 65.0% | |
| ! | GCAGATCTGGAGCAACGGCG+CGG | + | chr7.2:4258765-4258784 | None:intergenic | 65.0% |
| CGCCACCAGATTGCGGCGCT+CGG | - | chr7.2:4258727-4258746 | MS.gene37323:CDS | 70.0% | |
| ! | AGCCGAGCGCCGCAATCTGG+TGG | + | chr7.2:4258732-4258751 | None:intergenic | 70.0% |
| ! | GAGAGCCGAGCGCCGCAATC+TGG | + | chr7.2:4258735-4258754 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 4258604 | 4260490 | 4258604 | ID=MS.gene37323 |
| chr7.2 | mRNA | 4258604 | 4260490 | 4258604 | ID=MS.gene37323.t1;Parent=MS.gene37323 |
| chr7.2 | exon | 4260023 | 4260490 | 4260023 | ID=MS.gene37323.t1.exon1;Parent=MS.gene37323.t1 |
| chr7.2 | CDS | 4260023 | 4260490 | 4260023 | ID=cds.MS.gene37323.t1;Parent=MS.gene37323.t1 |
| chr7.2 | exon | 4259182 | 4259426 | 4259182 | ID=MS.gene37323.t1.exon2;Parent=MS.gene37323.t1 |
| chr7.2 | CDS | 4259182 | 4259426 | 4259182 | ID=cds.MS.gene37323.t1;Parent=MS.gene37323.t1 |
| chr7.2 | exon | 4258604 | 4258850 | 4258604 | ID=MS.gene37323.t1.exon3;Parent=MS.gene37323.t1 |
| chr7.2 | CDS | 4258604 | 4258850 | 4258604 | ID=cds.MS.gene37323.t1;Parent=MS.gene37323.t1 |
| Gene Sequence |
| Protein sequence |
