Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37324.t1 | XP_024625624.1 | 95.3 | 319 | 15 | 0 | 1 | 319 | 1 | 319 | 2.70E-181 | 644.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37324.t1 | I6YGS0 | 35.3 | 320 | 187 | 7 | 7 | 316 | 7 | 316 | 3.3e-50 | 200.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37324.t1 | A0A072U5U0 | 95.3 | 319 | 15 | 0 | 1 | 319 | 1 | 319 | 2.0e-181 | 644.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050929 | MS.gene37324 | 0.91482 | 1.22E-84 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene37324 | MS.gene071502 | PPI |
| MS.gene37324 | MS.gene07001 | PPI |
| MS.gene77823 | MS.gene37324 | PPI |
| MS.gene035367 | MS.gene37324 | PPI |
| MS.gene37324 | MS.gene066361 | PPI |
| MS.gene071504 | MS.gene37324 | PPI |
| MS.gene37324 | MS.gene071500 | PPI |
| MS.gene066360 | MS.gene37324 | PPI |
| MS.gene89620 | MS.gene37324 | PPI |
| MS.gene37324 | MS.gene041604 | PPI |
| MS.gene035369 | MS.gene37324 | PPI |
| MS.gene37324 | MS.gene025707 | PPI |
| MS.gene37324 | MS.gene22955 | PPI |
| MS.gene76453 | MS.gene37324 | PPI |
| MS.gene035373 | MS.gene37324 | PPI |
| MS.gene37324 | MS.gene012063 | PPI |
| MS.gene37324 | MS.gene035371 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37324.t1 | MTR_7g112615 | 95.298 | 319 | 15 | 0 | 1 | 319 | 1 | 319 | 0.0 | 636 |
| MS.gene37324.t1 | MTR_7g113050 | 91.536 | 319 | 27 | 0 | 1 | 319 | 1 | 319 | 0.0 | 617 |
| MS.gene37324.t1 | MTR_7g113030 | 89.342 | 319 | 34 | 0 | 1 | 319 | 1 | 319 | 0.0 | 605 |
| MS.gene37324.t1 | MTR_7g113020 | 89.028 | 319 | 35 | 0 | 1 | 319 | 1 | 319 | 0.0 | 602 |
| MS.gene37324.t1 | MTR_7g112620 | 89.342 | 319 | 34 | 0 | 1 | 319 | 1 | 319 | 0.0 | 599 |
| MS.gene37324.t1 | MTR_7g112960 | 77.116 | 319 | 73 | 0 | 1 | 319 | 1 | 319 | 0.0 | 520 |
| MS.gene37324.t1 | MTR_7g112963 | 76.489 | 319 | 75 | 0 | 1 | 319 | 1 | 319 | 0.0 | 511 |
| MS.gene37324.t1 | MTR_7g112970 | 74.922 | 319 | 77 | 2 | 1 | 319 | 1 | 316 | 0.0 | 508 |
| MS.gene37324.t1 | MTR_4g005160 | 71.827 | 323 | 86 | 3 | 1 | 319 | 1 | 322 | 1.18e-179 | 499 |
| MS.gene37324.t1 | MTR_7g112615 | 93.697 | 238 | 15 | 0 | 1 | 238 | 1 | 238 | 6.74e-170 | 471 |
| MS.gene37324.t1 | MTR_7g113050 | 90.756 | 238 | 22 | 0 | 1 | 238 | 1 | 238 | 1.38e-165 | 460 |
| MS.gene37324.t1 | MTR_7g113010 | 70.671 | 283 | 79 | 2 | 1 | 281 | 1 | 281 | 3.30e-147 | 427 |
| MS.gene37324.t1 | MTR_4g120240 | 61.371 | 321 | 120 | 3 | 1 | 319 | 37 | 355 | 1.99e-146 | 416 |
| MS.gene37324.t1 | MTR_7g108825 | 60.188 | 319 | 125 | 2 | 1 | 319 | 1 | 317 | 5.47e-140 | 399 |
| MS.gene37324.t1 | MTR_7g112615 | 93.711 | 159 | 10 | 0 | 1 | 159 | 1 | 159 | 1.82e-109 | 316 |
| MS.gene37324.t1 | MTR_8g076680 | 47.335 | 319 | 164 | 3 | 1 | 319 | 3 | 317 | 6.47e-106 | 312 |
| MS.gene37324.t1 | MTR_7g108825 | 57.143 | 238 | 100 | 2 | 1 | 238 | 1 | 236 | 1.91e-94 | 280 |
| MS.gene37324.t1 | MTR_7g112910 | 60.241 | 249 | 44 | 5 | 72 | 319 | 1 | 195 | 3.52e-92 | 273 |
| MS.gene37324.t1 | MTR_1g083480 | 74.843 | 159 | 36 | 2 | 1 | 156 | 1 | 158 | 1.51e-85 | 255 |
| MS.gene37324.t1 | MTR_8g076680 | 47.899 | 238 | 122 | 2 | 1 | 238 | 3 | 238 | 5.98e-80 | 243 |
| MS.gene37324.t1 | MTR_2g090240 | 37.383 | 321 | 187 | 7 | 1 | 318 | 1 | 310 | 4.49e-68 | 215 |
| MS.gene37324.t1 | MTR_2g090245 | 35.514 | 321 | 193 | 7 | 1 | 318 | 1 | 310 | 3.70e-64 | 205 |
| MS.gene37324.t1 | MTR_4g089060 | 36.449 | 321 | 189 | 6 | 1 | 318 | 1 | 309 | 5.61e-64 | 204 |
| MS.gene37324.t1 | MTR_4g089040 | 35.514 | 321 | 192 | 6 | 1 | 318 | 1 | 309 | 1.32e-60 | 196 |
| MS.gene37324.t1 | MTR_3g024250 | 81.132 | 106 | 20 | 0 | 47 | 152 | 2 | 107 | 1.29e-59 | 187 |
| MS.gene37324.t1 | MTR_4g089060 | 33.908 | 348 | 188 | 7 | 1 | 318 | 1 | 336 | 6.28e-59 | 192 |
| MS.gene37324.t1 | MTR_4g089060 | 38.627 | 233 | 134 | 3 | 1 | 231 | 1 | 226 | 6.16e-52 | 171 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37324.t1 | AT3G05600 | 60.802 | 324 | 122 | 4 | 1 | 319 | 1 | 324 | 3.60e-151 | 427 |
| MS.gene37324.t1 | AT4G02340 | 57.632 | 321 | 129 | 4 | 1 | 319 | 1 | 316 | 4.66e-138 | 394 |
| MS.gene37324.t1 | AT2G26740 | 62.733 | 322 | 113 | 4 | 4 | 319 | 1 | 321 | 5.25e-134 | 384 |
| MS.gene37324.t1 | AT2G26750 | 60.125 | 321 | 122 | 4 | 4 | 319 | 1 | 320 | 2.07e-127 | 367 |
| MS.gene37324.t1 | AT4G15960 | 52.308 | 325 | 148 | 3 | 1 | 319 | 51 | 374 | 8.43e-125 | 362 |
| MS.gene37324.t1 | AT3G05600 | 61.317 | 243 | 89 | 4 | 1 | 238 | 1 | 243 | 4.16e-110 | 320 |
| MS.gene37324.t1 | AT4G15955 | 49.387 | 326 | 127 | 4 | 5 | 319 | 6 | 304 | 7.96e-109 | 319 |
| MS.gene37324.t1 | AT3G51000 | 45.872 | 327 | 156 | 6 | 3 | 319 | 4 | 319 | 2.14e-103 | 306 |
| MS.gene37324.t1 | AT4G15955 | 56.897 | 174 | 65 | 2 | 5 | 168 | 6 | 179 | 3.20e-68 | 211 |
| MS.gene37324.t1 | AT4G15955 | 57.576 | 165 | 60 | 2 | 5 | 159 | 6 | 170 | 6.24e-65 | 202 |
Find 84 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATAGGCTTTGATTCTTTC+AGG | 0.119767 | 7.2:+4265032 | None:intergenic |
| CCCCTGACAAATTGCCTTCT+TGG | 0.174429 | 7.2:-4264436 | MS.gene37324:CDS |
| TTATTATATCTCTAGATTTC+AGG | 0.211379 | 7.2:-4264931 | MS.gene37324:intron |
| CAAGGAAGATGTGCCGAATT+TGG | 0.238850 | 7.2:-4263814 | MS.gene37324:CDS |
| TTAGGGTTTCTACGCGTAAA+TGG | 0.282040 | 7.2:+4264996 | None:intergenic |
| TGCAAAGATACCAACCAATT+AGG | 0.292935 | 7.2:+4265063 | None:intergenic |
| GGCAATTTGTCAGGGGTATC+CGG | 0.299751 | 7.2:+4264443 | None:intergenic |
| TACTCTCCCTTTGGAAGTAT+TGG | 0.334854 | 7.2:+4264482 | None:intergenic |
| TTTGAGAAAACGGGCTTTGT+TGG | 0.335209 | 7.2:-4264377 | MS.gene37324:CDS |
| ATACTTCCAAAGGGAGAGTA+TGG | 0.337259 | 7.2:-4264479 | MS.gene37324:CDS |
| CATGATTGGGGTGCCCTAAT+TGG | 0.343119 | 7.2:-4265077 | MS.gene37324:CDS |
| CCTAAAATCAGAACTGTTGA+TGG | 0.347446 | 7.2:-4264978 | MS.gene37324:CDS |
| TGTTTCTTGTAGCTCATGAT+TGG | 0.362025 | 7.2:-4265091 | MS.gene37324:CDS |
| GATGGCATGCGTGCTGCTTA+TGG | 0.363820 | 7.2:-4264960 | MS.gene37324:CDS |
| GAAGAAGTGATTGTCCAAAA+AGG | 0.365676 | 7.2:-4263792 | MS.gene37324:CDS |
| GTTTCCAAATTTGAGAAAAC+GGG | 0.368898 | 7.2:-4264386 | MS.gene37324:CDS |
| ACAATCACTTCTTCCAAATT+CGG | 0.378669 | 7.2:+4263801 | None:intergenic |
| CGCCAAGAGTACCAGAGTTC+AGG | 0.381681 | 7.2:+4265275 | None:intergenic |
| TGTTTCCAAATTTGAGAAAA+CGG | 0.384535 | 7.2:-4264387 | MS.gene37324:CDS |
| CGCCACCAGATTGCTGCTCT+CGG | 0.393921 | 7.2:-4265254 | MS.gene37324:CDS |
| GTTTCTTGTAGCTCATGATT+GGG | 0.395980 | 7.2:-4265090 | MS.gene37324:CDS |
| GCAAAGATACCAACCAATTA+GGG | 0.397770 | 7.2:+4265064 | None:intergenic |
| AGCCAAGAAGGCAATTTGTC+AGG | 0.405805 | 7.2:+4264434 | None:intergenic |
| TCACCGTAGCCACGAAGATC+TGG | 0.407123 | 7.2:+4265206 | None:intergenic |
| TGGATATACTCCTTCACCTT+TGG | 0.407549 | 7.2:+4263849 | None:intergenic |
| TTACTTGTATTGCAGAAATT+GGG | 0.423076 | 7.2:-4263955 | MS.gene37324:intron |
| CCTGTTGTCCTGTTCCTTCA+CGG | 0.424309 | 7.2:-4265302 | MS.gene37324:CDS |
| GAAGTATTGGAGGACCAGTT+TGG | 0.425771 | 7.2:+4264495 | None:intergenic |
| ATCCTCACAACTCGCCAAAC+TGG | 0.430315 | 7.2:-4264509 | MS.gene37324:CDS |
| GTGCCTGTGAAATTCATTAC+AGG | 0.432209 | 7.2:-4263897 | MS.gene37324:CDS |
| CATAGGCTTTGATTCTTTCA+GGG | 0.432762 | 7.2:+4265033 | None:intergenic |
| TTCCTGAACTCTGGTACTCT+TGG | 0.435109 | 7.2:-4265277 | MS.gene37324:CDS |
| CCAGTCCCATACTCTCCCTT+TGG | 0.435883 | 7.2:+4264473 | None:intergenic |
| GAGAGCCGAGAGCAGCAATC+TGG | 0.444182 | 7.2:+4265249 | None:intergenic |
| CAGGAAAGCCGTGAAGGAAC+AGG | 0.460850 | 7.2:+4265294 | None:intergenic |
| GTTGCTCTCATCGACTTGCT+TGG | 0.464883 | 7.2:-4265125 | MS.gene37324:CDS |
| CACAGAAAAGTTGAAGTGAA+TGG | 0.467750 | 7.2:-4265362 | MS.gene37324:CDS |
| TATCCATGGTGGAGGGTTCA+AGG | 0.477350 | 7.2:-4263832 | MS.gene37324:CDS |
| ATTGCTGCTCTCGGCTCTCT+CGG | 0.478105 | 7.2:-4265245 | MS.gene37324:CDS |
| CCGTGAAGGAACAGGACAAC+AGG | 0.481846 | 7.2:+4265302 | None:intergenic |
| TCTCCCTTTGGAAGTATTGG+AGG | 0.487060 | 7.2:+4264485 | None:intergenic |
| AAAATGCATATTGCAGAGAA+AGG | 0.487741 | 7.2:-4265335 | MS.gene37324:CDS |
| GCAATTTGTCAGGGGTATCC+GGG | 0.490025 | 7.2:+4264444 | None:intergenic |
| TCATCTTCTGTGAGCCAAGA+AGG | 0.501938 | 7.2:+4264422 | None:intergenic |
| TTCACGGCTTTCCTGAACTC+TGG | 0.502205 | 7.2:-4265286 | MS.gene37324:CDS |
| GCTCCAGATCTTCGTGGCTA+CGG | 0.504735 | 7.2:-4265209 | MS.gene37324:CDS |
| GCTGTTGCTCCAGATCTTCG+TGG | 0.527210 | 7.2:-4265215 | MS.gene37324:CDS |
| GAAGTTCAGATGGCTGAAGT+TGG | 0.532879 | 7.2:-4264554 | MS.gene37324:CDS |
| GAAATTCATTACAGGTGACT+TGG | 0.543660 | 7.2:-4263889 | MS.gene37324:CDS |
| ATTGCAGAGAAAGGAAAAGA+AGG | 0.548522 | 7.2:-4265326 | MS.gene37324:CDS |
| AAGGAGTATATCCATGGTGG+AGG | 0.549978 | 7.2:-4263840 | MS.gene37324:CDS |
| CTACGGTGACACCGATGCTC+CGG | 0.550138 | 7.2:-4265192 | MS.gene37324:CDS |
| GCCAAGAAGGCAATTTGTCA+GGG | 0.555944 | 7.2:+4264435 | None:intergenic |
| GCGTAGCTGCTAATCGAAGC+CGG | 0.557719 | 7.2:+4265173 | None:intergenic |
| TGGTCCTCCAATACTTCCAA+AGG | 0.564157 | 7.2:-4264489 | MS.gene37324:CDS |
| CCAAAGGGAGAGTATGGGAC+TGG | 0.568658 | 7.2:-4264473 | MS.gene37324:CDS |
| AGCCGAGAGCAGCAATCTGG+TGG | 0.568882 | 7.2:+4265252 | None:intergenic |
| GAGCTGATGGCACCATGGAA+TGG | 0.569405 | 7.2:-4263933 | MS.gene37324:CDS |
| ATTGGGGTGCCCTAATTGGT+TGG | 0.573060 | 7.2:-4265073 | MS.gene37324:CDS |
| GCTAATCGAAGCCGGAGCAT+CGG | 0.580714 | 7.2:+4265181 | None:intergenic |
| TGGAACACTGAGACAAACAT+AGG | 0.583516 | 7.2:+4265016 | None:intergenic |
| ATACTCCTTCACCTTTGGTG+AGG | 0.584740 | 7.2:+4263854 | None:intergenic |
| TCACCTGTAATGAATTTCAC+AGG | 0.591992 | 7.2:+4263894 | None:intergenic |
| GGTCCTCCAATACTTCCAAA+GGG | 0.592627 | 7.2:-4264488 | MS.gene37324:CDS |
| ATGGAATGGAGTGAAAATCA+AGG | 0.596236 | 7.2:-4263919 | MS.gene37324:CDS |
| TTTCTTGTAGCTCATGATTG+GGG | 0.597857 | 7.2:-4265089 | MS.gene37324:CDS |
| TTGCAGAAATTGGGAGCTGA+TGG | 0.610067 | 7.2:-4263946 | MS.gene37324:intron |
| CAACAATCAAGAAGCAGCAG+AGG | 0.610084 | 7.2:-4263757 | MS.gene37324:CDS |
| GACCAGTTTGGCGAGTTGTG+AGG | 0.620536 | 7.2:+4264507 | None:intergenic |
| TCTCATCGACTTGCTTGGTG+TGG | 0.620782 | 7.2:-4265120 | MS.gene37324:CDS |
| AGAGTTCAGGAAAGCCGTGA+AGG | 0.628117 | 7.2:+4265288 | None:intergenic |
| TACTTCCAAAGGGAGAGTAT+GGG | 0.628244 | 7.2:-4264478 | MS.gene37324:CDS |
| AAGGTGAAGGAGTATATCCA+TGG | 0.634923 | 7.2:-4263846 | MS.gene37324:CDS |
| TTATCCGTATCACAGGAACC+GGG | 0.636418 | 7.2:-4264584 | MS.gene37324:intron |
| ATACACCTCACCAAAGGTGA+AGG | 0.642917 | 7.2:-4263859 | MS.gene37324:CDS |
| AAACGACAGATAGAGATGGA+AGG | 0.647201 | 7.2:-4265392 | None:intergenic |
| ATTGGGAGCTGATGGCACCA+TGG | 0.649732 | 7.2:-4263938 | MS.gene37324:CDS |
| CATTGTATACACCTCACCAA+AGG | 0.655794 | 7.2:-4263865 | MS.gene37324:CDS |
| CTTCCTTGAACCCTCCACCA+TGG | 0.658760 | 7.2:+4263829 | None:intergenic |
| GAAGATCTGGAGCAACAGCA+CGG | 0.677123 | 7.2:+4265219 | None:intergenic |
| GTATGGGACTGGATTCAACC+CGG | 0.688961 | 7.2:-4264462 | MS.gene37324:CDS |
| CCAAGAAGGCAATTTGTCAG+GGG | 0.688969 | 7.2:+4264436 | None:intergenic |
| AGGAGTATATCCATGGTGGA+GGG | 0.690032 | 7.2:-4263839 | MS.gene37324:CDS |
| GTGAAGGAGTATATCCATGG+TGG | 0.691244 | 7.2:-4263843 | MS.gene37324:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTTTTAAAAAAAAAAA+TGG | + | chr7.2:4265010-4265029 | None:intergenic | 0.0% |
| !! | GAGTAATATTAAATATGTTA+GGG | - | chr7.2:4264425-4264444 | MS.gene37324:CDS | 15.0% |
| !!! | TCTATATTTACATTTCTTTT+CGG | - | chr7.2:4264814-4264833 | MS.gene37324:intron | 15.0% |
| !! | ATGAATTATTGTTCATTCTA+AGG | - | chr7.2:4264403-4264422 | MS.gene37324:CDS | 20.0% |
| !! | CAACTTTAGTATTAACATAT+AGG | + | chr7.2:4264236-4264255 | None:intergenic | 20.0% |
| !! | GAAATGTAAATATAGATTTG+TGG | + | chr7.2:4264810-4264829 | None:intergenic | 20.0% |
| !! | GGAGTAATATTAAATATGTT+AGG | - | chr7.2:4264424-4264443 | MS.gene37324:CDS | 20.0% |
| !! | TTATTATATCTCTAGATTTC+AGG | - | chr7.2:4264162-4264181 | MS.gene37324:intron | 20.0% |
| !!! | CTATATTTACATTTCTTTTC+GGG | - | chr7.2:4264815-4264834 | MS.gene37324:intron | 20.0% |
| !!! | TATTTTAAGATGATACAGAA+AGG | + | chr7.2:4264193-4264212 | None:intergenic | 20.0% |
| ! | AATAGAGCCTAAATCAAAAT+CGG | - | chr7.2:4264328-4264347 | MS.gene37324:intron | 25.0% |
| ! | AATCAAAATCGGAACATTTA+TGG | - | chr7.2:4264339-4264358 | MS.gene37324:intron | 25.0% |
| ! | ATTACTTGTATTGCAGAAAT+TGG | - | chr7.2:4265137-4265156 | MS.gene37324:CDS | 25.0% |
| ! | TATTTATACCTGCAATATGA+CGG | + | chr7.2:4264456-4264475 | None:intergenic | 25.0% |
| ! | TGTCAAATATCAACACATAT+CGG | + | chr7.2:4264922-4264941 | None:intergenic | 25.0% |
| ! | TGTTTCCAAATTTGAGAAAA+CGG | - | chr7.2:4264706-4264725 | MS.gene37324:intron | 25.0% |
| ! | TTACTTGTATTGCAGAAATT+GGG | - | chr7.2:4265138-4265157 | MS.gene37324:CDS | 25.0% |
| !! | TCATGTTTTATATTTGTGTC+AGG | - | chr7.2:4265052-4265071 | MS.gene37324:CDS | 25.0% |
| !!! | AAATGTTCCGATTTTGATTT+AGG | + | chr7.2:4264338-4264357 | None:intergenic | 25.0% |
| !!! | TGTAATATTTTGATTCTCTG+TGG | - | chr7.2:4264768-4264787 | MS.gene37324:intron | 25.0% |
| AAAATGCATATTGCAGAGAA+AGG | - | chr7.2:4263758-4263777 | MS.gene37324:CDS | 30.0% | |
| AATGTCGTCCCAAAAAAAAA+AGG | + | chr7.2:4264954-4264973 | None:intergenic | 30.0% | |
| ACAATCACTTCTTCCAAATT+CGG | + | chr7.2:4265295-4265314 | None:intergenic | 30.0% | |
| ATTTATACCTGCAATATGAC+GGG | + | chr7.2:4264455-4264474 | None:intergenic | 30.0% | |
| CTGAATGTAATATGTGATTG+TGG | + | chr7.2:4264981-4265000 | None:intergenic | 30.0% | |
| GTTTCCAAATTTGAGAAAAC+GGG | - | chr7.2:4264707-4264726 | MS.gene37324:intron | 30.0% | |
| TATCTATGAGTCATACTCAA+TGG | - | chr7.2:4264281-4264300 | MS.gene37324:intron | 30.0% | |
| TGACTCATAGATATAGTTCA+AGG | + | chr7.2:4264274-4264293 | None:intergenic | 30.0% | |
| !! | CATCAACAGTTCTGATTTTA+GGG | + | chr7.2:4264117-4264136 | None:intergenic | 30.0% |
| !!! | TTGTTTTTTATCCGTATCAC+AGG | - | chr7.2:4264502-4264521 | MS.gene37324:CDS | 30.0% |
| AGATCACTCTTTATGAACCA+CGG | + | chr7.2:4265095-4265114 | None:intergenic | 35.0% | |
| ATGGAATGGAGTGAAAATCA+AGG | - | chr7.2:4265174-4265193 | MS.gene37324:CDS | 35.0% | |
| ATTCTTGATTGAGTCATGCT+GGG | + | chr7.2:4264385-4264404 | None:intergenic | 35.0% | |
| ATTGCAGAGAAAGGAAAAGA+AGG | - | chr7.2:4263767-4263786 | MS.gene37324:CDS | 35.0% | |
| CACAGAAAAGTTGAAGTGAA+TGG | - | chr7.2:4263731-4263750 | MS.gene37324:CDS | 35.0% | |
| CCTAAAATCAGAACTGTTGA+TGG | - | chr7.2:4264115-4264134 | MS.gene37324:intron | 35.0% | |
| GAAATTCATTACAGGTGACT+TGG | - | chr7.2:4265204-4265223 | MS.gene37324:CDS | 35.0% | |
| GAAGAAGTGATTGTCCAAAA+AGG | - | chr7.2:4265301-4265320 | MS.gene37324:CDS | 35.0% | |
| GATTTGTGGAAAACAATCAG+AGG | + | chr7.2:4264796-4264815 | None:intergenic | 35.0% | |
| GCAAAGATACCAACCAATTA+GGG | + | chr7.2:4264032-4264051 | None:intergenic | 35.0% | |
| GTTTCTTGTAGCTCATGATT+GGG | - | chr7.2:4264003-4264022 | MS.gene37324:intron | 35.0% | |
| TATCAACACATATCGGACAT+TGG | + | chr7.2:4264915-4264934 | None:intergenic | 35.0% | |
| TCACCTGTAATGAATTTCAC+AGG | + | chr7.2:4265202-4265221 | None:intergenic | 35.0% | |
| TGCAAAGATACCAACCAATT+AGG | + | chr7.2:4264033-4264052 | None:intergenic | 35.0% | |
| TGTTTCTTGTAGCTCATGAT+TGG | - | chr7.2:4264002-4264021 | MS.gene37324:intron | 35.0% | |
| TTTCTTGTAGCTCATGATTG+GGG | - | chr7.2:4264004-4264023 | MS.gene37324:intron | 35.0% | |
| ! | AAAGCCCGTTTTCTCAAATT+TGG | + | chr7.2:4264714-4264733 | None:intergenic | 35.0% |
| ! | ACATAGGCTTTGATTCTTTC+AGG | + | chr7.2:4264064-4264083 | None:intergenic | 35.0% |
| ! | CATAGGCTTTGATTCTTTCA+GGG | + | chr7.2:4264063-4264082 | None:intergenic | 35.0% |
| ! | TACGCATGTTTTCACATAGT+AGG | - | chr7.2:4263938-4263957 | MS.gene37324:CDS | 35.0% |
| ! | TTGATTTTCACTCCATTCCA+TGG | + | chr7.2:4265175-4265194 | None:intergenic | 35.0% |
| !! | ATCTGAACTTCCATTTTTCC+CGG | + | chr7.2:4264530-4264549 | None:intergenic | 35.0% |
| !! | CCATCAACAGTTCTGATTTT+AGG | + | chr7.2:4264118-4264137 | None:intergenic | 35.0% |
| !!! | TGACACCGCCTTTTTTTTTT+GGG | - | chr7.2:4264943-4264962 | MS.gene37324:CDS | 35.0% |
| !!! | TTGACACCGCCTTTTTTTTT+TGG | - | chr7.2:4264942-4264961 | MS.gene37324:CDS | 35.0% |
| AGTGATTGTCCAAAAAGGAG+TGG | - | chr7.2:4265306-4265325 | MS.gene37324:CDS | 40.0% | |
| ATACTTCCAAAGGGAGAGTA+TGG | - | chr7.2:4264614-4264633 | MS.gene37324:intron | 40.0% | |
| CATTCTTGATTGAGTCATGC+TGG | + | chr7.2:4264386-4264405 | None:intergenic | 40.0% | |
| CATTGTATACACCTCACCAA+AGG | - | chr7.2:4265228-4265247 | MS.gene37324:CDS | 40.0% | |
| GGGAAAAATGGAAGTTCAGA+TGG | - | chr7.2:4264529-4264548 | MS.gene37324:CDS | 40.0% | |
| GTCGTCCCAAAAAAAAAAGG+CGG | + | chr7.2:4264951-4264970 | None:intergenic | 40.0% | |
| GTGCCTGTGAAATTCATTAC+AGG | - | chr7.2:4265196-4265215 | MS.gene37324:CDS | 40.0% | |
| TGGAACACTGAGACAAACAT+AGG | + | chr7.2:4264080-4264099 | None:intergenic | 40.0% | |
| TGGATATACTCCTTCACCTT+TGG | + | chr7.2:4265247-4265266 | None:intergenic | 40.0% | |
| TTAGGGTTTCTACGCGTAAA+TGG | + | chr7.2:4264100-4264119 | None:intergenic | 40.0% | |
| TTTATCCGTATCACAGGAAC+CGG | - | chr7.2:4264508-4264527 | MS.gene37324:CDS | 40.0% | |
| TTTATGAACCACGGAGACAT+TGG | + | chr7.2:4265086-4265105 | None:intergenic | 40.0% | |
| ! | AAGGTGAAGGAGTATATCCA+TGG | - | chr7.2:4265247-4265266 | MS.gene37324:CDS | 40.0% |
| ! | TACTCTCCCTTTGGAAGTAT+TGG | + | chr7.2:4264614-4264633 | None:intergenic | 40.0% |
| ! | TACTTCCAAAGGGAGAGTAT+GGG | - | chr7.2:4264615-4264634 | MS.gene37324:intron | 40.0% |
| ! | TTTGAGAAAACGGGCTTTGT+TGG | - | chr7.2:4264716-4264735 | MS.gene37324:intron | 40.0% |
| AGCCAAGAAGGCAATTTGTC+AGG | + | chr7.2:4264662-4264681 | None:intergenic | 45.0% | |
| ATACACCTCACCAAAGGTGA+AGG | - | chr7.2:4265234-4265253 | MS.gene37324:CDS | 45.0% | |
| ATACTCCTTCACCTTTGGTG+AGG | + | chr7.2:4265242-4265261 | None:intergenic | 45.0% | |
| ATCACAGGAACCGGGAAAAA+TGG | - | chr7.2:4264517-4264536 | MS.gene37324:CDS | 45.0% | |
| CAACAATCAAGAAGCAGCAG+AGG | - | chr7.2:4265336-4265355 | MS.gene37324:CDS | 45.0% | |
| CAAGGAAGATGTGCCGAATT+TGG | - | chr7.2:4265279-4265298 | MS.gene37324:CDS | 45.0% | |
| CCAAGAAGGCAATTTGTCAG+GGG | + | chr7.2:4264660-4264679 | None:intergenic | 45.0% | |
| GAAGTTCAGATGGCTGAAGT+TGG | - | chr7.2:4264539-4264558 | MS.gene37324:CDS | 45.0% | |
| GCCAAGAAGGCAATTTGTCA+GGG | + | chr7.2:4264661-4264680 | None:intergenic | 45.0% | |
| GGTCCTCCAATACTTCCAAA+GGG | - | chr7.2:4264605-4264624 | MS.gene37324:intron | 45.0% | |
| TCATCTTCTGTGAGCCAAGA+AGG | + | chr7.2:4264674-4264693 | None:intergenic | 45.0% | |
| TGGTCCTCCAATACTTCCAA+AGG | - | chr7.2:4264604-4264623 | MS.gene37324:intron | 45.0% | |
| TTATCCGTATCACAGGAACC+GGG | - | chr7.2:4264509-4264528 | MS.gene37324:CDS | 45.0% | |
| TTCCTGAACTCTGGTACTCT+TGG | - | chr7.2:4263816-4263835 | MS.gene37324:CDS | 45.0% | |
| TTGCAGAAATTGGGAGCTGA+TGG | - | chr7.2:4265147-4265166 | MS.gene37324:CDS | 45.0% | |
| ! | AAGGAGTATATCCATGGTGG+AGG | - | chr7.2:4265253-4265272 | MS.gene37324:CDS | 45.0% |
| ! | AGGAGTATATCCATGGTGGA+GGG | - | chr7.2:4265254-4265273 | MS.gene37324:CDS | 45.0% |
| ! | GTGAAGGAGTATATCCATGG+TGG | - | chr7.2:4265250-4265269 | MS.gene37324:CDS | 45.0% |
| ! | TGAAGTGAGCCACTCCTTTT+TGG | + | chr7.2:4265318-4265337 | None:intergenic | 45.0% |
| ! | TTTTCCCGGTTCCTGTGATA+CGG | + | chr7.2:4264516-4264535 | None:intergenic | 45.0% |
| !! | GAAGTATTGGAGGACCAGTT+TGG | + | chr7.2:4264601-4264620 | None:intergenic | 45.0% |
| !! | TCTCCCTTTGGAAGTATTGG+AGG | + | chr7.2:4264611-4264630 | None:intergenic | 45.0% |
| AGAGTTCAGGAAAGCCGTGA+AGG | + | chr7.2:4263808-4263827 | None:intergenic | 50.0% | |
| ATCCTCACAACTCGCCAAAC+TGG | - | chr7.2:4264584-4264603 | MS.gene37324:intron | 50.0% | |
| CCCCTGACAAATTGCCTTCT+TGG | - | chr7.2:4264657-4264676 | MS.gene37324:intron | 50.0% | |
| CCTGTTGTCCTGTTCCTTCA+CGG | - | chr7.2:4263791-4263810 | MS.gene37324:CDS | 50.0% | |
| GTATGGGACTGGATTCAACC+CGG | - | chr7.2:4264631-4264650 | MS.gene37324:intron | 50.0% | |
| TGTTGTGTCCAATGTCTCCG+TGG | - | chr7.2:4265075-4265094 | MS.gene37324:CDS | 50.0% | |
| TTCACGGCTTTCCTGAACTC+TGG | - | chr7.2:4263807-4263826 | MS.gene37324:CDS | 50.0% | |
| ! | ATTGGGGTGCCCTAATTGGT+TGG | - | chr7.2:4264020-4264039 | MS.gene37324:intron | 50.0% |
| ! | CATGATTGGGGTGCCCTAAT+TGG | - | chr7.2:4264016-4264035 | MS.gene37324:intron | 50.0% |
| ! | GAAGATCTGGAGCAACAGCA+CGG | + | chr7.2:4263877-4263896 | None:intergenic | 50.0% |
| ! | TATCCATGGTGGAGGGTTCA+AGG | - | chr7.2:4265261-4265280 | MS.gene37324:CDS | 50.0% |
| !! | GCAATTTGTCAGGGGTATCC+GGG | + | chr7.2:4264652-4264671 | None:intergenic | 50.0% |
| !! | GGCAATTTGTCAGGGGTATC+CGG | + | chr7.2:4264653-4264672 | None:intergenic | 50.0% |
| !! | GTTGCTCTCATCGACTTGCT+TGG | - | chr7.2:4263968-4263987 | MS.gene37324:intron | 50.0% |
| !! | TCTCATCGACTTGCTTGGTG+TGG | - | chr7.2:4263973-4263992 | MS.gene37324:intron | 50.0% |
| ATTGCTGCTCTCGGCTCTCT+CGG | - | chr7.2:4263848-4263867 | MS.gene37324:CDS | 55.0% | |
| ATTGGGAGCTGATGGCACCA+TGG | - | chr7.2:4265155-4265174 | MS.gene37324:CDS | 55.0% | |
| CAGGAAAGCCGTGAAGGAAC+AGG | + | chr7.2:4263802-4263821 | None:intergenic | 55.0% | |
| CCAGTCCCATACTCTCCCTT+TGG | + | chr7.2:4264623-4264642 | None:intergenic | 55.0% | |
| CCGTGAAGGAACAGGACAAC+AGG | + | chr7.2:4263794-4263813 | None:intergenic | 55.0% | |
| CTTCCTTGAACCCTCCACCA+TGG | + | chr7.2:4265267-4265286 | None:intergenic | 55.0% | |
| GACCAGTTTGGCGAGTTGTG+AGG | + | chr7.2:4264589-4264608 | None:intergenic | 55.0% | |
| GAGCTGATGGCACCATGGAA+TGG | - | chr7.2:4265160-4265179 | MS.gene37324:CDS | 55.0% | |
| GCGTAGCTGCTAATCGAAGC+CGG | + | chr7.2:4263923-4263942 | None:intergenic | 55.0% | |
| GCTAATCGAAGCCGGAGCAT+CGG | + | chr7.2:4263915-4263934 | None:intergenic | 55.0% | |
| GCTCCAGATCTTCGTGGCTA+CGG | - | chr7.2:4263884-4263903 | MS.gene37324:CDS | 55.0% | |
| GCTGTTGCTCCAGATCTTCG+TGG | - | chr7.2:4263878-4263897 | MS.gene37324:CDS | 55.0% | |
| GGGTCTACCCGTCATATTGC+AGG | - | chr7.2:4264445-4264464 | MS.gene37324:CDS | 55.0% | |
| TCACCGTAGCCACGAAGATC+TGG | + | chr7.2:4263890-4263909 | None:intergenic | 55.0% | |
| ! | CCAAAGGGAGAGTATGGGAC+TGG | - | chr7.2:4264620-4264639 | MS.gene37324:intron | 55.0% |
| !! | CGCCAAGAGTACCAGAGTTC+AGG | + | chr7.2:4263821-4263840 | None:intergenic | 55.0% |
| !! | GATGGCATGCGTGCTGCTTA+TGG | - | chr7.2:4264133-4264152 | MS.gene37324:intron | 55.0% |
| AGCCGAGAGCAGCAATCTGG+TGG | + | chr7.2:4263844-4263863 | None:intergenic | 60.0% | |
| CGCCACCAGATTGCTGCTCT+CGG | - | chr7.2:4263839-4263858 | MS.gene37324:CDS | 60.0% | |
| CTACGGTGACACCGATGCTC+CGG | - | chr7.2:4263901-4263920 | MS.gene37324:CDS | 60.0% | |
| GAGAGCCGAGAGCAGCAATC+TGG | + | chr7.2:4263847-4263866 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 4263716 | 4265399 | 4263716 | ID=MS.gene37324 |
| chr7.2 | mRNA | 4263716 | 4265399 | 4263716 | ID=MS.gene37324.t1;Parent=MS.gene37324 |
| chr7.2 | exon | 4264932 | 4265399 | 4264932 | ID=MS.gene37324.t1.exon1;Parent=MS.gene37324.t1 |
| chr7.2 | CDS | 4264932 | 4265399 | 4264932 | ID=cds.MS.gene37324.t1;Parent=MS.gene37324.t1 |
| chr7.2 | exon | 4264347 | 4264591 | 4264347 | ID=MS.gene37324.t1.exon2;Parent=MS.gene37324.t1 |
| chr7.2 | CDS | 4264347 | 4264591 | 4264347 | ID=cds.MS.gene37324.t1;Parent=MS.gene37324.t1 |
| chr7.2 | exon | 4263716 | 4263962 | 4263716 | ID=MS.gene37324.t1.exon3;Parent=MS.gene37324.t1 |
| chr7.2 | CDS | 4263716 | 4263962 | 4263716 | ID=cds.MS.gene37324.t1;Parent=MS.gene37324.t1 |
| Gene Sequence |
| Protein sequence |
