AlfalfaGEDB | MS.gene38730

M. sativa cultivar XinJiangDaYe / MS.gene38730

KEGG: -
GO: GO:0003674 GO:0003824 GO:0016787
PFAM: PF07859.16

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38730.t1	XP_003603016.1	95.6	316	14	0	1	316	1	316	2.10E-178	634.8

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38730.t1	Q9SX78	54.7	320	132	5	1	316	1	311	5.3e-101	369.0

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38730.t1	G7J6B0	95.6	316	14	0	1	316	1	316	1.5e-178	634.8

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene054628	MS.gene38730	0.974094	1.49E-137	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene38730	MS.gene047803	PPI
MS.gene38730	MS.gene053479	PPI
MS.gene38730	MS.gene022960	PPI
MS.gene38730	MS.gene26527	PPI
MS.gene38730	MS.gene39627	PPI
MS.gene38730	MS.gene26526	PPI
MS.gene38730	MS.gene047802	PPI
MS.gene38730	MS.gene23692	PPI
MS.gene38730	MS.gene39628	PPI
MS.gene38730	MS.gene053480	PPI
MS.gene38730	MS.gene047804	PPI
MS.gene38730	MS.gene26528	PPI
MS.gene38730	MS.gene051696	PPI
MS.gene38730	MS.gene053470	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38730.t1	MTR_3g101420	95.570	316	14	0	1	316	1	316	0.0	620
MS.gene38730.t1	MTR_4g086510	43.077	325	170	7	1	316	1	319	2.64e-93	280
MS.gene38730.t1	MTR_4g086480	42.901	324	169	5	1	314	1	318	2.44e-91	275
MS.gene38730.t1	MTR_5g005850	42.812	320	174	6	4	314	9	328	6.51e-90	271
MS.gene38730.t1	MTR_7g056207	42.405	316	168	6	8	315	41	350	2.92e-88	268
MS.gene38730.t1	MTR_4g086540	44.373	311	144	5	8	314	19	304	1.09e-85	260
MS.gene38730.t1	MTR_4g086470	43.590	312	165	4	10	316	14	319	9.00e-85	258
MS.gene38730.t1	MTR_1g105020	40.446	314	176	5	10	314	11	322	2.50e-82	252
MS.gene38730.t1	MTR_3g450680	40.379	317	181	5	8	316	17	333	3.61e-79	244
MS.gene38730.t1	MTR_1g104930	43.963	323	168	7	2	316	7	324	1.06e-73	230
MS.gene38730.t1	MTR_5g005920	37.383	321	187	6	8	316	14	332	4.76e-73	228
MS.gene38730.t1	MTR_8g040860	39.806	309	177	5	15	316	24	330	2.34e-70	221
MS.gene38730.t1	MTR_7g051020	40.923	325	178	7	2	316	7	327	2.11e-69	219
MS.gene38730.t1	MTR_5g005900	38.154	325	189	7	3	316	5	328	4.64e-67	213
MS.gene38730.t1	MTR_1g104933	42.222	315	169	7	8	316	11	318	4.14e-64	205
MS.gene38730.t1	MTR_1g012430	35.443	316	187	6	8	316	4	309	1.34e-53	178
MS.gene38730.t1	MTR_1g111280	35.647	317	180	7	8	312	27	331	1.46e-53	179
MS.gene38730.t1	MTR_7g406880	34.347	329	183	10	15	316	29	351	6.10e-51	172
MS.gene38730.t1	MTR_4g050140	32.372	312	194	6	15	316	13	317	1.49e-47	162
MS.gene38730.t1	MTR_7g107040	31.715	309	197	5	14	314	14	316	3.37e-44	154
MS.gene38730.t1	MTR_6g464120	35.094	265	150	6	15	265	24	280	3.17e-41	150
MS.gene38730.t1	MTR_8g035520	31.629	313	196	8	15	316	21	326	9.99e-40	142
MS.gene38730.t1	MTR_8g035540	31.429	315	194	9	15	314	9	316	1.06e-39	142
MS.gene38730.t1	MTR_1g102160	32.509	283	160	9	15	276	19	291	2.71e-39	141
MS.gene38730.t1	MTR_1g102170	34.483	261	148	7	20	266	43	294	2.28e-38	139
MS.gene38730.t1	MTR_6g464510	33.439	314	177	9	20	315	28	327	5.07e-38	137
MS.gene38730.t1	MTR_6g065270	32.131	305	171	9	34	316	47	337	1.50e-37	137
MS.gene38730.t1	MTR_0007s0520	31.661	319	184	9	17	316	23	326	1.56e-37	136
MS.gene38730.t1	MTR_1g082210	32.530	249	138	5	32	261	53	290	9.23e-36	132
MS.gene38730.t1	MTR_6g065400	31.000	300	177	7	34	316	49	335	2.05e-35	131
MS.gene38730.t1	MTR_6g065370	31.333	300	176	7	34	316	49	335	2.83e-35	130
MS.gene38730.t1	MTR_3g012440	29.499	339	201	10	10	316	10	342	2.42e-33	125
MS.gene38730.t1	MTR_1g089310	30.323	310	171	9	20	297	38	334	4.89e-33	125
MS.gene38730.t1	MTR_1g089310	32.389	247	141	6	65	297	116	350	5.97e-33	125
MS.gene38730.t1	MTR_6g065110	31.525	295	172	7	38	315	54	335	1.08e-32	124
MS.gene38730.t1	MTR_6g464320	30.503	318	187	10	18	315	23	326	1.35e-32	123
MS.gene38730.t1	MTR_6g464280	30.909	330	180	10	14	315	16	325	6.18e-32	121
MS.gene38730.t1	MTR_6g065340	30.068	296	169	7	34	316	60	330	2.10e-31	120
MS.gene38730.t1	MTR_6g065120	29.900	301	180	8	34	316	50	337	2.00e-30	118
MS.gene38730.t1	MTR_8g035500	29.537	281	170	8	15	276	12	283	4.99e-30	116
MS.gene38730.t1	MTR_7g093950	31.290	310	172	12	32	315	53	347	1.52e-29	115
MS.gene38730.t1	MTR_6g065430	28.956	297	182	8	32	314	46	327	2.41e-26	106
MS.gene38730.t1	MTR_6g022710	28.049	246	138	9	63	272	153	395	2.55e-18	85.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38730.t1	AT1G47480	54.688	320	132	5	1	316	1	311	1.63e-125	362
MS.gene38730.t1	AT3G48690	41.009	317	171	5	10	314	8	320	8.62e-82	251
MS.gene38730.t1	AT3G48700	41.379	319	166	6	13	314	11	325	4.69e-81	249
MS.gene38730.t1	AT2G03550	41.214	313	172	6	9	316	7	312	1.40e-80	247
MS.gene38730.t1	AT1G49650	42.173	313	167	6	12	315	66	373	5.11e-80	248
MS.gene38730.t1	AT1G49640	41.667	312	162	7	13	314	12	313	2.73e-76	236
MS.gene38730.t1	AT1G19190	39.308	318	174	6	9	316	7	315	4.29e-75	233
MS.gene38730.t1	AT1G49660	41.587	315	169	6	10	314	8	317	1.18e-74	232
MS.gene38730.t1	AT5G16080	33.333	327	186	10	8	315	29	342	4.51e-48	164
MS.gene38730.t1	AT1G68620	35.117	299	166	8	10	296	26	308	7.02e-48	164
MS.gene38730.t1	AT5G06570	32.051	312	198	6	15	315	18	326	3.12e-39	141
MS.gene38730.t1	AT5G06570	32.051	312	198	6	15	315	18	326	3.12e-39	141
MS.gene38730.t1	AT5G06570	32.051	312	198	6	15	315	33	341	4.51e-39	141
MS.gene38730.t1	AT5G06570	32.051	312	198	6	15	315	33	341	4.51e-39	141
MS.gene38730.t1	AT3G05120	30.094	319	186	7	20	315	38	342	2.88e-38	139
MS.gene38730.t1	AT5G27320	29.968	317	187	7	20	315	38	340	1.20e-37	137
MS.gene38730.t1	AT2G45600	31.447	318	182	11	15	314	16	315	1.38e-35	131
MS.gene38730.t1	AT3G63010	30.035	283	170	6	36	302	69	339	1.70e-35	132
MS.gene38730.t1	AT2G45610	28.797	316	202	9	15	315	17	324	6.65e-34	127
MS.gene38730.t1	AT5G23530	31.438	299	171	9	32	316	50	328	9.33e-32	121
MS.gene38730.t1	AT5G62180	31.773	299	173	8	34	314	38	323	1.69e-31	120
MS.gene38730.t1	AT3G27320	28.794	257	138	10	58	272	120	373	1.62e-18	85.9
MS.gene38730.t1	AT3G27320	28.794	257	138	10	58	272	152	405	1.94e-18	85.9

Find 77 sgRNAs with CRISPR-Local

Find 90 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TAATTTCAATTTCAAGATTT+TGG	0.035715	3.3:-84045542	MS.gene38730:CDS
ATTGAAATTATTATCCTTTA+AGG	0.053225	3.3:+84045555	None:intergenic
TCATGGTGAATCCTTACTTT+TGG	0.204822	3.3:-84045513	MS.gene38730:CDS
CAGCCGCTTACAATGATTCT+TGG	0.307666	3.3:-84045720	MS.gene38730:CDS
TAAACTTTATCATAATATAT+TGG	0.313129	3.3:-84045284	MS.gene38730:CDS
TGGGAGGATTGTGATGTCTT+TGG	0.313418	3.3:+84045948	None:intergenic
AGGAAACTACATAGCCTTAA+AGG	0.329994	3.3:-84045569	MS.gene38730:CDS
TTGAGGGAGTTATGGTAAAC+AGG	0.343629	3.3:+84045814	None:intergenic
CATAATATATTGGTTAATAG+TGG	0.368553	3.3:-84045274	MS.gene38730:CDS
GGTGGATAGATGGTGGGAAT+TGG	0.384327	3.3:-84045440	MS.gene38730:CDS
TCGCTATCTCGGTTAATTAC+CGG	0.400920	3.3:-84045765	MS.gene38730:CDS
TTCTGCTACAAGTTTGTTGA+GGG	0.402134	3.3:+84045798	None:intergenic
CAAGTTTGTTGAGGGAGTTA+TGG	0.402947	3.3:+84045806	None:intergenic
GAAGAAGCTCCAGGGCTTGA+AGG	0.418009	3.3:-84045367	MS.gene38730:CDS
TTGGTTTGTCCATCTGATAA+AGG	0.425987	3.3:-84045421	MS.gene38730:CDS
GCTGAATTATATGAGATTCA+AGG	0.430850	3.3:-84045238	MS.gene38730:CDS
GGTTCCTTACCCCAAAAGTA+AGG	0.432228	3.3:+84045502	None:intergenic
TCACTTATTTCCACACCAAT+TGG	0.436714	3.3:+84045481	None:intergenic
CCATTGATTGTATACTTCCA+TGG	0.437221	3.3:-84045868	MS.gene38730:CDS
AAGAGAATGATTATGAAAGT+TGG	0.440131	3.3:-84045654	MS.gene38730:CDS
TCCTTTGATTAATCCGTTTG+TGG	0.442157	3.3:-84045389	MS.gene38730:CDS
GCTCCAGGGCTTGAAGGGTT+AGG	0.452764	3.3:-84045361	MS.gene38730:CDS
ATTCTTGGGAAGCAGTTCAA+TGG	0.455054	3.3:-84045705	MS.gene38730:CDS
AGAGGATGAAGATATACAAT+AGG	0.456378	3.3:+84045840	None:intergenic
TCATTGTAAGCGGCTGGAAG+TGG	0.457974	3.3:+84045727	None:intergenic
AGCCGCTTACAATGATTCTT+GGG	0.464184	3.3:-84045719	MS.gene38730:CDS
TCATAGATTTGTCGATGGGT+TGG	0.464440	3.3:+84046072	None:intergenic
AGAGAAGAATGGTGGATAGA+TGG	0.464480	3.3:-84045450	MS.gene38730:CDS
AAAGATATATTGATAGAAAG+AGG	0.465976	3.3:-84045307	MS.gene38730:CDS
CCATGGAAGTATACAATCAA+TGG	0.470075	3.3:+84045868	None:intergenic
GTGGATGTTCCGGTGCTAAC+CGG	0.472727	3.3:+84045746	None:intergenic
CCGTTTGTGGAAGAAGCTCC+AGG	0.475107	3.3:-84045376	MS.gene38730:CDS
ATATATTGGTTAATAGTGGT+TGG	0.476791	3.3:-84045270	MS.gene38730:CDS
CAAGAATCATTGTAAGCGGC+TGG	0.479330	3.3:+84045721	None:intergenic
CTTCTGCTACAAGTTTGTTG+AGG	0.480079	3.3:+84045797	None:intergenic
GGCATTGGCGTCGTTCCTCC+CGG	0.480972	3.3:-84045997	MS.gene38730:CDS
GCGGCTGGAAGTGGATGTTC+CGG	0.485630	3.3:+84045736	None:intergenic
TTGGAGATAACGTTTGTTTG+AGG	0.489762	3.3:+84045967	None:intergenic
CCTGGAGCTTCTTCCACAAA+CGG	0.490261	3.3:+84045376	None:intergenic
GTTTGTTTGAGGATCGATGC+CGG	0.495904	3.3:+84045978	None:intergenic
AACTTCATAGATTTGTCGAT+GGG	0.496050	3.3:+84046068	None:intergenic
TCATCATTTCCTTTATCAGA+TGG	0.496874	3.3:+84045412	None:intergenic
TTTGTTTGAGGATCGATGCC+GGG	0.502447	3.3:+84045979	None:intergenic
TTCTTGGCAGGTGATAGTGC+AGG	0.508682	3.3:-84045601	MS.gene38730:CDS
GTCGAAAGATATGCCGGCAT+TGG	0.510442	3.3:-84046012	MS.gene38730:CDS
GCTTCACATGCTGTTGAAGA+TGG	0.513321	3.3:-84045679	MS.gene38730:CDS
GGGAGGAACGACGCCAATGC+CGG	0.515304	3.3:+84045999	None:intergenic
CTGAATTATATGAGATTCAA+GGG	0.517407	3.3:-84045237	MS.gene38730:CDS
CTCTTAGCTTTATCACACTC+AGG	0.520717	3.3:+84045187	None:intergenic
ACACCTAACCCTTCAAGCCC+TGG	0.529370	3.3:+84045358	None:intergenic
ATATAGTCTTGCTGTGACAC+CGG	0.533831	3.3:+84045921	None:intergenic
AGCAAACATCATCGCTATCT+CGG	0.546431	3.3:-84045776	MS.gene38730:CDS
TTGGTTAATAGTGGTTGGAA+AGG	0.546510	3.3:-84045265	MS.gene38730:CDS
GAAGAATGGTGGATAGATGG+TGG	0.548405	3.3:-84045447	MS.gene38730:CDS
AAGAAGCTCCAGGGCTTGAA+GGG	0.550930	3.3:-84045366	MS.gene38730:CDS
TCCACAAACGGATTAATCAA+AGG	0.558343	3.3:+84045388	None:intergenic
AAGAATGGTGGATAGATGGT+GGG	0.558366	3.3:-84045446	MS.gene38730:CDS
GAACTTCATAGATTTGTCGA+TGG	0.569806	3.3:+84046067	None:intergenic
GATAGTGCAGGTGCTAACAT+AGG	0.572065	3.3:-84045589	MS.gene38730:CDS
GGTTAATTACCGGTTAGCAC+CGG	0.599685	3.3:-84045755	MS.gene38730:CDS
GGGTAAGGAACCAATTGGTG+TGG	0.605765	3.3:-84045491	MS.gene38730:CDS
TTCCCAAGAATCATTGTAAG+CGG	0.612607	3.3:+84045717	None:intergenic
GGTACCGTCGAAAGATATGC+CGG	0.612722	3.3:-84046018	MS.gene38730:CDS
CGTTTGTGGAAGAAGCTCCA+GGG	0.617332	3.3:-84045375	MS.gene38730:CDS
TCTTTGTGTACACGAAGGTA+GGG	0.619638	3.3:+84046042	None:intergenic
GTTATGGTAAACAGGGTCAG+AGG	0.624470	3.3:+84045822	None:intergenic
TGATGATTTGAAGAGAAGAA+TGG	0.628091	3.3:-84045461	MS.gene38730:CDS
GTCTTTGTGTACACGAAGGT+AGG	0.633999	3.3:+84046041	None:intergenic
TACCTTCGTGTACACAAAGA+CGG	0.636875	3.3:-84046039	MS.gene38730:CDS
TGATTTGAAGAGAAGAATGG+TGG	0.647899	3.3:-84045458	MS.gene38730:CDS
AATGCCGGCATATCTTTCGA+CGG	0.666567	3.3:+84046014	None:intergenic
TGAGGGAGTTATGGTAAACA+GGG	0.672820	3.3:+84045815	None:intergenic
TTGATTGTATACTTCCATGG+TGG	0.674326	3.3:-84045865	MS.gene38730:CDS
GTTTGAGGATCGATGCCGGG+AGG	0.683731	3.3:+84045982	None:intergenic
TTGTGTACACGAAGGTAGGG+AGG	0.684898	3.3:+84046045	None:intergenic
ATATACAATAGGCTCCACCA+TGG	0.708865	3.3:+84045851	None:intergenic
TACCGTCTTTGTGTACACGA+AGG	0.725120	3.3:+84046037	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TAAACTTTATCATAATATAT+TGG	-	chr3.3:84045944-84045963	MS.gene38730:CDS	10.0%
!!	ATTGAAATTATTATCCTTTA+AGG	+	chr3.3:84045676-84045695	None:intergenic	15.0%
!!!	AATTTCAATTTCAAGATTTT+GGG	-	chr3.3:84045687-84045706	MS.gene38730:CDS	15.0%
!!!	TAATTTCAATTTCAAGATTT+TGG	-	chr3.3:84045686-84045705	MS.gene38730:CDS	15.0%
!!	AAAGATATATTGATAGAAAG+AGG	-	chr3.3:84045921-84045940	MS.gene38730:CDS	20.0%
!!!	CATAATATATTGGTTAATAG+TGG	-	chr3.3:84045954-84045973	MS.gene38730:CDS	20.0%
!	AAGAGAATGATTATGAAAGT+TGG	-	chr3.3:84045574-84045593	MS.gene38730:CDS	25.0%
!	CTGAATTATATGAGATTCAA+GGG	-	chr3.3:84045991-84046010	MS.gene38730:CDS	25.0%
!!	ATATATTGGTTAATAGTGGT+TGG	-	chr3.3:84045958-84045977	MS.gene38730:CDS	25.0%
!!	TGACTTTAACAAAGTTTTCT+TGG	-	chr3.3:84045611-84045630	MS.gene38730:CDS	25.0%
!!!	TTTTCTGAAGTTGAATTGTT+TGG	+	chr3.3:84045336-84045355	None:intergenic	25.0%
	AACTTCATAGATTTGTCGAT+GGG	+	chr3.3:84045163-84045182	None:intergenic	30.0%
	AGAGGATGAAGATATACAAT+AGG	+	chr3.3:84045391-84045410	None:intergenic	30.0%
	GCTGAATTATATGAGATTCA+AGG	-	chr3.3:84045990-84046009	MS.gene38730:CDS	30.0%
	TCATCATTTCCTTTATCAGA+TGG	+	chr3.3:84045819-84045838	None:intergenic	30.0%
	TGATGATTTGAAGAGAAGAA+TGG	-	chr3.3:84045767-84045786	MS.gene38730:CDS	30.0%
!	TTTAACAAAGTTTTCTTGGC+AGG	-	chr3.3:84045615-84045634	MS.gene38730:CDS	30.0%
	GAACTTCATAGATTTGTCGA+TGG	+	chr3.3:84045164-84045183	None:intergenic	35.0%
	TCACTTATTTCCACACCAAT+TGG	+	chr3.3:84045750-84045769	None:intergenic	35.0%
	TCCTTTGATTAATCCGTTTG+TGG	-	chr3.3:84045839-84045858	MS.gene38730:CDS	35.0%
	TGATTTGAAGAGAAGAATGG+TGG	-	chr3.3:84045770-84045789	MS.gene38730:CDS	35.0%
	TTCCCAAGAATCATTGTAAG+CGG	+	chr3.3:84045514-84045533	None:intergenic	35.0%
	TTGATTGTATACTTCCATGG+TGG	-	chr3.3:84045363-84045382	MS.gene38730:CDS	35.0%
	TTGGAGATAACGTTTGTTTG+AGG	+	chr3.3:84045264-84045283	None:intergenic	35.0%
	TTGGTTAATAGTGGTTGGAA+AGG	-	chr3.3:84045963-84045982	MS.gene38730:CDS	35.0%
!	AGGAAACTACATAGCCTTAA+AGG	-	chr3.3:84045659-84045678	MS.gene38730:CDS	35.0%
!	CCATGGAAGTATACAATCAA+TGG	+	chr3.3:84045363-84045382	None:intergenic	35.0%
!	CCATTGATTGTATACTTCCA+TGG	-	chr3.3:84045360-84045379	MS.gene38730:CDS	35.0%
!	TCATGGTGAATCCTTACTTT+TGG	-	chr3.3:84045715-84045734	MS.gene38730:CDS	35.0%
!!	ATGGTGAATCCTTACTTTTG+GGG	-	chr3.3:84045717-84045736	MS.gene38730:CDS	35.0%
!!	CAAGATTTTGGGTCTTATCA+TGG	-	chr3.3:84045698-84045717	MS.gene38730:CDS	35.0%
!!	CATGGTGAATCCTTACTTTT+GGG	-	chr3.3:84045716-84045735	MS.gene38730:CDS	35.0%
!!	TCCACAAACGGATTAATCAA+AGG	+	chr3.3:84045843-84045862	None:intergenic	35.0%
!!	TTCTGCTACAAGTTTGTTGA+GGG	+	chr3.3:84045433-84045452	None:intergenic	35.0%
!!	TTGGTTTGTCCATCTGATAA+AGG	-	chr3.3:84045807-84045826	MS.gene38730:CDS	35.0%
	AGCAAACATCATCGCTATCT+CGG	-	chr3.3:84045452-84045471	MS.gene38730:CDS	40.0%
	AGCCGCTTACAATGATTCTT+GGG	-	chr3.3:84045509-84045528	MS.gene38730:CDS	40.0%
	ATATACAATAGGCTCCACCA+TGG	+	chr3.3:84045380-84045399	None:intergenic	40.0%
	ATCACAATCCTCCCAAAAAC+CGG	-	chr3.3:84045288-84045307	MS.gene38730:CDS	40.0%
	ATTCTTGGGAAGCAGTTCAA+TGG	-	chr3.3:84045523-84045542	MS.gene38730:CDS	40.0%
	TACCTTCGTGTACACAAAGA+CGG	-	chr3.3:84045189-84045208	MS.gene38730:CDS	40.0%
	TCATAGATTTGTCGATGGGT+TGG	+	chr3.3:84045159-84045178	None:intergenic	40.0%
	TCGCTATCTCGGTTAATTAC+CGG	-	chr3.3:84045463-84045482	MS.gene38730:CDS	40.0%
	TCTTTGTGTACACGAAGGTA+GGG	+	chr3.3:84045189-84045208	None:intergenic	40.0%
	TGAGGGAGTTATGGTAAACA+GGG	+	chr3.3:84045416-84045435	None:intergenic	40.0%
	TTGAGGGAGTTATGGTAAAC+AGG	+	chr3.3:84045417-84045436	None:intergenic	40.0%
!	ATATAGTCTTGCTGTGACAC+CGG	+	chr3.3:84045310-84045329	None:intergenic	40.0%
!!	AAGAATGGTGGATAGATGGT+GGG	-	chr3.3:84045782-84045801	MS.gene38730:CDS	40.0%
!!	AGAGAAGAATGGTGGATAGA+TGG	-	chr3.3:84045778-84045797	MS.gene38730:CDS	40.0%
!!	CAAGTTTGTTGAGGGAGTTA+TGG	+	chr3.3:84045425-84045444	None:intergenic	40.0%
!!	CTCTTAGCTTTATCACACTC+AGG	+	chr3.3:84046044-84046063	None:intergenic	40.0%
!!	CTTCTGCTACAAGTTTGTTG+AGG	+	chr3.3:84045434-84045453	None:intergenic	40.0%
!!!	GAATCCTTACTTTTGGGGTA+AGG	-	chr3.3:84045722-84045741	MS.gene38730:CDS	40.0%
!!!	TTTTGGGGTAAGGAACCAAT+TGG	-	chr3.3:84045732-84045751	MS.gene38730:CDS	40.0%
	AATGCCGGCATATCTTTCGA+CGG	+	chr3.3:84045217-84045236	None:intergenic	45.0%
	CAAGAATCATTGTAAGCGGC+TGG	+	chr3.3:84045510-84045529	None:intergenic	45.0%
	CAGCCGCTTACAATGATTCT+TGG	-	chr3.3:84045508-84045527	MS.gene38730:CDS	45.0%
	GATAGTGCAGGTGCTAACAT+AGG	-	chr3.3:84045639-84045658	MS.gene38730:CDS	45.0%
	GCTTCACATGCTGTTGAAGA+TGG	-	chr3.3:84045549-84045568	MS.gene38730:CDS	45.0%
	GGTTCCTTACCCCAAAAGTA+AGG	+	chr3.3:84045729-84045748	None:intergenic	45.0%
	GTCTTTGTGTACACGAAGGT+AGG	+	chr3.3:84045190-84045209	None:intergenic	45.0%
	GTTATGGTAAACAGGGTCAG+AGG	+	chr3.3:84045409-84045428	None:intergenic	45.0%
	GTTTGTTTGAGGATCGATGC+CGG	+	chr3.3:84045253-84045272	None:intergenic	45.0%
	TACCGTCTTTGTGTACACGA+AGG	+	chr3.3:84045194-84045213	None:intergenic	45.0%
	TGGGAGGATTGTGATGTCTT+TGG	+	chr3.3:84045283-84045302	None:intergenic	45.0%
	TTTGTTTGAGGATCGATGCC+GGG	+	chr3.3:84045252-84045271	None:intergenic	45.0%
!	GGTTAATTACCGGTTAGCAC+CGG	-	chr3.3:84045473-84045492	MS.gene38730:CDS	45.0%
!!	GAAGAATGGTGGATAGATGG+TGG	-	chr3.3:84045781-84045800	MS.gene38730:CDS	45.0%
!!!	TTGCTGTGACACCGGTTTTT+GGG	+	chr3.3:84045302-84045321	None:intergenic	45.0%
	AAGAAGCTCCAGGGCTTGAA+GGG	-	chr3.3:84045862-84045881	MS.gene38730:CDS	50.0%
	CCTGGAGCTTCTTCCACAAA+CGG	+	chr3.3:84045855-84045874	None:intergenic	50.0%
	CGTTTGTGGAAGAAGCTCCA+GGG	-	chr3.3:84045853-84045872	MS.gene38730:CDS	50.0%
	GGGTAAGGAACCAATTGGTG+TGG	-	chr3.3:84045737-84045756	MS.gene38730:CDS	50.0%
	GGTACCGTCGAAAGATATGC+CGG	-	chr3.3:84045210-84045229	MS.gene38730:CDS	50.0%
	GTCGAAAGATATGCCGGCAT+TGG	-	chr3.3:84045216-84045235	MS.gene38730:CDS	50.0%
	TCATTGTAAGCGGCTGGAAG+TGG	+	chr3.3:84045504-84045523	None:intergenic	50.0%
	TTGTGTACACGAAGGTAGGG+AGG	+	chr3.3:84045186-84045205	None:intergenic	50.0%
!	TTCTTGGCAGGTGATAGTGC+AGG	-	chr3.3:84045627-84045646	MS.gene38730:CDS	50.0%
!!	GGTGGATAGATGGTGGGAAT+TGG	-	chr3.3:84045788-84045807	MS.gene38730:CDS	50.0%
!!!	CTTGCTGTGACACCGGTTTT+TGG	+	chr3.3:84045303-84045322	None:intergenic	50.0%
	ACACCTAACCCTTCAAGCCC+TGG	+	chr3.3:84045873-84045892	None:intergenic	55.0%
	CCGTTTGTGGAAGAAGCTCC+AGG	-	chr3.3:84045852-84045871	MS.gene38730:CDS	55.0%
	GAAGAAGCTCCAGGGCTTGA+AGG	-	chr3.3:84045861-84045880	MS.gene38730:CDS	55.0%
!	GTGGATGTTCCGGTGCTAAC+CGG	+	chr3.3:84045485-84045504	None:intergenic	55.0%
!!!	CTGTGACACCGGTTTTTGGG+AGG	+	chr3.3:84045299-84045318	None:intergenic	55.0%
	GCGGCTGGAAGTGGATGTTC+CGG	+	chr3.3:84045495-84045514	None:intergenic	60.0%
	GCTCCAGGGCTTGAAGGGTT+AGG	-	chr3.3:84045867-84045886	MS.gene38730:CDS	60.0%
	GTTTGAGGATCGATGCCGGG+AGG	+	chr3.3:84045249-84045268	None:intergenic	60.0%
	GGGAGGAACGACGCCAATGC+CGG	+	chr3.3:84045232-84045251	None:intergenic	65.0%
!!	GGCATTGGCGTCGTTCCTCC+CGG	-	chr3.3:84045231-84045250	MS.gene38730:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	84045150	84046100	84045150	ID=MS.gene38730
chr3.3	mRNA	84045150	84046100	84045150	ID=MS.gene38730.t1;Parent=MS.gene38730
chr3.3	exon	84045150	84046100	84045150	ID=MS.gene38730.t1.exon1;Parent=MS.gene38730.t1
chr3.3	CDS	84045150	84046100	84045150	ID=cds.MS.gene38730.t1;Parent=MS.gene38730.t1

Gene Sequence

>MS.gene38730

ATGGATCCAACCCATCGACAAATCTATGAAGTTCCTCCCTACCTTCGTGTACACAAAGACGGTACCGTCGAAAGATATGCCGGCATTGGCGTCGTTCCTCCCGGCATCGATCCTCAAACAAACGTTATCTCCAAAGACATCACAATCCTCCCAAAAACCGGTGTCACAGCAAGACTATATTCTCCAAACAATTCAACTTCAGAAAAGCTTCCATTGATTGTATACTTCCATGGTGGAGCCTATTGTATATCTTCATCCTCTGACCCTGTTTACCATAACTCCCTCAACAAACTTGTAGCAGAAGCAAACATCATCGCTATCTCGGTTAATTACCGGTTAGCACCGGAACATCCACTTCCAGCCGCTTACAATGATTCTTGGGAAGCAGTTCAATGGATTGCTTCACATGCTGTTGAAGATGGTGAAGAGAATGATTATGAAAGTTGGCTTAAAGAAAAAGTTGACTTTAACAAAGTTTTCTTGGCAGGTGATAGTGCAGGTGCTAACATAGGAAACTACATAGCCTTAAAGGATAATAATTTCAATTTCAAGATTTTGGGTCTTATCATGGTGAATCCTTACTTTTGGGGTAAGGAACCAATTGGTGTGGAAATAAGTGATGATTTGAAGAGAAGAATGGTGGATAGATGGTGGGAATTGGTTTGTCCATCTGATAAAGGAAATGATGATCCTTTGATTAATCCGTTTGTGGAAGAAGCTCCAGGGCTTGAAGGGTTAGGTGTTGAAAAAGTTCTTGTTACTGTTTGTGAGAAAGATATATTGATAGAAAGAGGTAAACTTTATCATAATATATTGGTTAATAGTGGTTGGAAAGGAACTGCTGAATTATATGAGATTCAAGGGAAAGATCATGTGTTTCATATTTTCAATCCTGAGTGTGATAAAGCTAAGAGTTTGATTAAACGCATAGCTGTTTTCATCAATGAATAG

Protein sequence

>MS.gene38730.t1

MDPTHRQIYEVPPYLRVHKDGTVERYAGIGVVPPGIDPQTNVISKDITILPKTGVTARLYSPNNSTSEKLPLIVYFHGGAYCISSSSDPVYHNSLNKLVAEANIIAISVNYRLAPEHPLPAAYNDSWEAVQWIASHAVEDGEENDYESWLKEKVDFNKVFLAGDSAGANIGNYIALKDNNFNFKILGLIMVNPYFWGKEPIGVEISDDLKRRMVDRWWELVCPSDKGNDDPLINPFVEEAPGLEGLGVEKVLVTVCEKDILIERGKLYHNILVNSGWKGTAELYEIQGKDHVFHIFNPECDKAKSLIKRIAVFINE