Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054628.t1 | XP_003603016.1 | 95.3 | 316 | 15 | 0 | 1 | 316 | 1 | 316 | 6.90E-177 | 629.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054628.t1 | Q9SX78 | 54.7 | 320 | 132 | 5 | 1 | 316 | 1 | 311 | 1.5e-100 | 367.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054628.t1 | G7J6B0 | 95.3 | 316 | 15 | 0 | 1 | 316 | 1 | 316 | 5.0e-177 | 629.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054628 | MS.gene38730 | 0.974094 | 1.49E-137 | -1.69E-46 |
| MS.gene054628 | MS.gene48487 | 0.974014 | 2.05E-137 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene39628 | MS.gene054628 | PPI |
| MS.gene047803 | MS.gene054628 | PPI |
| MS.gene26526 | MS.gene054628 | PPI |
| MS.gene26528 | MS.gene054628 | PPI |
| MS.gene022960 | MS.gene054628 | PPI |
| MS.gene047804 | MS.gene054628 | PPI |
| MS.gene23692 | MS.gene054628 | PPI |
| MS.gene053470 | MS.gene054628 | PPI |
| MS.gene053479 | MS.gene054628 | PPI |
| MS.gene047802 | MS.gene054628 | PPI |
| MS.gene051696 | MS.gene054628 | PPI |
| MS.gene39627 | MS.gene054628 | PPI |
| MS.gene054628 | MS.gene053480 | PPI |
| MS.gene26527 | MS.gene054628 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054628.t1 | MTR_3g101420 | 95.253 | 316 | 15 | 0 | 1 | 316 | 1 | 316 | 0.0 | 617 |
| MS.gene054628.t1 | MTR_4g086510 | 42.769 | 325 | 171 | 7 | 1 | 316 | 1 | 319 | 5.86e-92 | 276 |
| MS.gene054628.t1 | MTR_4g086480 | 42.593 | 324 | 170 | 5 | 1 | 314 | 1 | 318 | 6.85e-90 | 271 |
| MS.gene054628.t1 | MTR_5g005850 | 42.812 | 313 | 171 | 5 | 10 | 314 | 16 | 328 | 1.55e-88 | 268 |
| MS.gene054628.t1 | MTR_7g056207 | 42.089 | 316 | 169 | 6 | 8 | 315 | 41 | 350 | 7.02e-87 | 265 |
| MS.gene054628.t1 | MTR_4g086540 | 44.051 | 311 | 145 | 5 | 8 | 314 | 19 | 304 | 3.59e-84 | 256 |
| MS.gene054628.t1 | MTR_4g086470 | 43.269 | 312 | 166 | 4 | 10 | 316 | 14 | 319 | 2.21e-83 | 254 |
| MS.gene054628.t1 | MTR_1g105020 | 40.127 | 314 | 177 | 5 | 10 | 314 | 11 | 322 | 8.77e-81 | 248 |
| MS.gene054628.t1 | MTR_3g450680 | 40.379 | 317 | 181 | 5 | 8 | 316 | 17 | 333 | 5.45e-79 | 244 |
| MS.gene054628.t1 | MTR_1g104930 | 43.963 | 323 | 168 | 7 | 2 | 316 | 7 | 324 | 7.10e-74 | 230 |
| MS.gene054628.t1 | MTR_5g005920 | 37.695 | 321 | 186 | 6 | 8 | 316 | 14 | 332 | 8.72e-74 | 230 |
| MS.gene054628.t1 | MTR_8g040860 | 39.806 | 309 | 177 | 5 | 15 | 316 | 24 | 330 | 3.16e-70 | 221 |
| MS.gene054628.t1 | MTR_7g051020 | 40.923 | 325 | 178 | 7 | 2 | 316 | 7 | 327 | 1.39e-69 | 219 |
| MS.gene054628.t1 | MTR_5g005900 | 37.846 | 325 | 190 | 7 | 3 | 316 | 5 | 328 | 9.70e-66 | 209 |
| MS.gene054628.t1 | MTR_1g104933 | 42.038 | 314 | 171 | 6 | 8 | 316 | 11 | 318 | 3.30e-64 | 205 |
| MS.gene054628.t1 | MTR_1g111280 | 35.331 | 317 | 181 | 7 | 8 | 312 | 27 | 331 | 2.03e-52 | 176 |
| MS.gene054628.t1 | MTR_1g012430 | 35.127 | 316 | 188 | 6 | 8 | 316 | 4 | 309 | 4.83e-52 | 174 |
| MS.gene054628.t1 | MTR_7g406880 | 34.043 | 329 | 184 | 10 | 15 | 316 | 29 | 351 | 1.45e-49 | 168 |
| MS.gene054628.t1 | MTR_4g050140 | 32.051 | 312 | 195 | 6 | 15 | 316 | 13 | 317 | 4.02e-46 | 159 |
| MS.gene054628.t1 | MTR_7g107040 | 31.392 | 309 | 198 | 5 | 14 | 314 | 14 | 316 | 1.16e-42 | 150 |
| MS.gene054628.t1 | MTR_6g464120 | 35.094 | 265 | 150 | 6 | 15 | 265 | 24 | 280 | 3.84e-41 | 150 |
| MS.gene054628.t1 | MTR_8g035520 | 31.629 | 313 | 196 | 8 | 15 | 316 | 21 | 326 | 8.27e-40 | 142 |
| MS.gene054628.t1 | MTR_8g035540 | 31.429 | 315 | 194 | 9 | 15 | 314 | 9 | 316 | 1.64e-39 | 141 |
| MS.gene054628.t1 | MTR_1g102160 | 32.509 | 283 | 160 | 9 | 15 | 276 | 19 | 291 | 2.85e-39 | 141 |
| MS.gene054628.t1 | MTR_6g065270 | 32.459 | 305 | 170 | 9 | 34 | 316 | 47 | 337 | 4.23e-38 | 138 |
| MS.gene054628.t1 | MTR_1g102170 | 34.483 | 261 | 148 | 7 | 20 | 266 | 43 | 294 | 5.26e-38 | 138 |
| MS.gene054628.t1 | MTR_6g464510 | 33.439 | 314 | 177 | 9 | 20 | 315 | 28 | 327 | 6.59e-38 | 137 |
| MS.gene054628.t1 | MTR_0007s0520 | 31.661 | 319 | 184 | 9 | 17 | 316 | 23 | 326 | 1.40e-37 | 136 |
| MS.gene054628.t1 | MTR_1g082210 | 32.530 | 249 | 138 | 5 | 32 | 261 | 53 | 290 | 5.72e-36 | 132 |
| MS.gene054628.t1 | MTR_6g065400 | 31.000 | 300 | 177 | 7 | 34 | 316 | 49 | 335 | 7.76e-36 | 132 |
| MS.gene054628.t1 | MTR_6g065370 | 31.333 | 300 | 176 | 7 | 34 | 316 | 49 | 335 | 1.39e-35 | 131 |
| MS.gene054628.t1 | MTR_1g089310 | 32.794 | 247 | 140 | 6 | 65 | 297 | 100 | 334 | 8.67e-34 | 127 |
| MS.gene054628.t1 | MTR_1g089310 | 32.794 | 247 | 140 | 6 | 65 | 297 | 116 | 350 | 9.90e-34 | 127 |
| MS.gene054628.t1 | MTR_6g065110 | 31.525 | 295 | 172 | 7 | 38 | 315 | 54 | 335 | 6.76e-33 | 124 |
| MS.gene054628.t1 | MTR_6g464320 | 30.503 | 318 | 187 | 10 | 18 | 315 | 23 | 326 | 1.61e-32 | 123 |
| MS.gene054628.t1 | MTR_3g012440 | 29.204 | 339 | 202 | 10 | 10 | 316 | 10 | 342 | 7.50e-32 | 121 |
| MS.gene054628.t1 | MTR_6g065340 | 30.068 | 296 | 169 | 7 | 34 | 316 | 60 | 330 | 7.63e-32 | 121 |
| MS.gene054628.t1 | MTR_6g464280 | 30.909 | 330 | 180 | 10 | 14 | 315 | 16 | 325 | 1.55e-31 | 120 |
| MS.gene054628.t1 | MTR_6g065120 | 29.900 | 301 | 180 | 8 | 34 | 316 | 50 | 337 | 1.06e-30 | 118 |
| MS.gene054628.t1 | MTR_7g093950 | 31.731 | 312 | 168 | 12 | 32 | 315 | 53 | 347 | 3.20e-30 | 117 |
| MS.gene054628.t1 | MTR_8g035500 | 29.537 | 281 | 170 | 8 | 15 | 276 | 12 | 283 | 6.86e-30 | 115 |
| MS.gene054628.t1 | MTR_6g065430 | 28.956 | 297 | 182 | 8 | 32 | 314 | 46 | 327 | 1.50e-26 | 107 |
| MS.gene054628.t1 | MTR_6g022710 | 28.049 | 246 | 138 | 9 | 63 | 272 | 153 | 395 | 1.85e-18 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054628.t1 | AT1G47480 | 54.688 | 320 | 132 | 5 | 1 | 316 | 1 | 311 | 1.45e-125 | 362 |
| MS.gene054628.t1 | AT3G48690 | 41.009 | 317 | 171 | 5 | 10 | 314 | 8 | 320 | 1.80e-81 | 250 |
| MS.gene054628.t1 | AT3G48700 | 41.379 | 319 | 166 | 6 | 13 | 314 | 11 | 325 | 1.42e-80 | 248 |
| MS.gene054628.t1 | AT2G03550 | 41.214 | 313 | 172 | 6 | 9 | 316 | 7 | 312 | 1.83e-80 | 247 |
| MS.gene054628.t1 | AT1G49650 | 42.173 | 313 | 167 | 6 | 12 | 315 | 66 | 373 | 9.16e-80 | 247 |
| MS.gene054628.t1 | AT1G49640 | 41.667 | 312 | 162 | 7 | 13 | 314 | 12 | 313 | 5.70e-76 | 235 |
| MS.gene054628.t1 | AT1G19190 | 39.308 | 318 | 174 | 6 | 9 | 316 | 7 | 315 | 1.05e-74 | 232 |
| MS.gene054628.t1 | AT1G49660 | 41.587 | 315 | 169 | 6 | 10 | 314 | 8 | 317 | 1.73e-74 | 232 |
| MS.gene054628.t1 | AT5G16080 | 33.028 | 327 | 187 | 10 | 8 | 315 | 29 | 342 | 9.79e-47 | 161 |
| MS.gene054628.t1 | AT1G68620 | 34.783 | 299 | 167 | 8 | 10 | 296 | 26 | 308 | 1.59e-46 | 160 |
| MS.gene054628.t1 | AT5G06570 | 31.731 | 312 | 199 | 6 | 15 | 315 | 18 | 326 | 3.29e-39 | 141 |
| MS.gene054628.t1 | AT5G06570 | 31.731 | 312 | 199 | 6 | 15 | 315 | 18 | 326 | 3.29e-39 | 141 |
| MS.gene054628.t1 | AT5G06570 | 31.731 | 312 | 199 | 6 | 15 | 315 | 33 | 341 | 4.15e-39 | 141 |
| MS.gene054628.t1 | AT5G06570 | 31.731 | 312 | 199 | 6 | 15 | 315 | 33 | 341 | 4.15e-39 | 141 |
| MS.gene054628.t1 | AT3G05120 | 30.094 | 319 | 186 | 7 | 20 | 315 | 38 | 342 | 1.71e-38 | 139 |
| MS.gene054628.t1 | AT5G27320 | 29.968 | 317 | 187 | 7 | 20 | 315 | 38 | 340 | 9.60e-38 | 137 |
| MS.gene054628.t1 | AT3G63010 | 30.035 | 283 | 170 | 6 | 36 | 302 | 69 | 339 | 8.76e-36 | 132 |
| MS.gene054628.t1 | AT2G45600 | 31.629 | 313 | 188 | 11 | 15 | 314 | 16 | 315 | 1.84e-35 | 131 |
| MS.gene054628.t1 | AT2G45610 | 28.797 | 316 | 202 | 9 | 15 | 315 | 17 | 324 | 8.54e-34 | 126 |
| MS.gene054628.t1 | AT5G23530 | 31.438 | 299 | 171 | 9 | 32 | 316 | 50 | 328 | 6.11e-32 | 122 |
| MS.gene054628.t1 | AT5G62180 | 31.773 | 299 | 173 | 8 | 34 | 314 | 38 | 323 | 3.59e-31 | 119 |
| MS.gene054628.t1 | AT3G27320 | 28.794 | 257 | 138 | 10 | 58 | 272 | 120 | 373 | 1.36e-18 | 86.3 |
| MS.gene054628.t1 | AT3G27320 | 28.794 | 257 | 138 | 10 | 58 | 272 | 152 | 405 | 1.58e-18 | 86.3 |
Find 77 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATTTCAATTTCAAGATTT+TGG | 0.035715 | 3.4:-89371317 | MS.gene054628:CDS |
| ATTGAAATTATTATCCTTTA+AGG | 0.053225 | 3.4:+89371330 | None:intergenic |
| TCATGGTGAATCCTTACTTT+TGG | 0.204822 | 3.4:-89371288 | MS.gene054628:CDS |
| CAGCCGCTTACAATGATTCT+TGG | 0.307666 | 3.4:-89371495 | MS.gene054628:CDS |
| TAAACTTTATCATAATATAT+TGG | 0.313129 | 3.4:-89371059 | MS.gene054628:CDS |
| TGGGAGGATTGTGATGTCTT+TGG | 0.313418 | 3.4:+89371723 | None:intergenic |
| AGGAAACTACATAGCCTTAA+AGG | 0.329994 | 3.4:-89371344 | MS.gene054628:CDS |
| TTGAGGGAGTTATGGTAAAC+AGG | 0.343629 | 3.4:+89371589 | None:intergenic |
| CATAATATATTGGTTAATAG+TGG | 0.368553 | 3.4:-89371049 | MS.gene054628:CDS |
| GGTGGATAGATGGTGGGAAT+TGG | 0.384327 | 3.4:-89371215 | MS.gene054628:CDS |
| TCGCTATCTCGGTTAATTAC+CGG | 0.400920 | 3.4:-89371540 | MS.gene054628:CDS |
| TTCTGCTACAAGTTTGTTGA+GGG | 0.402134 | 3.4:+89371573 | None:intergenic |
| CAAGTTTGTTGAGGGAGTTA+TGG | 0.402947 | 3.4:+89371581 | None:intergenic |
| GAAGAAGCTCCAGGGCTTGA+AGG | 0.418009 | 3.4:-89371142 | MS.gene054628:CDS |
| TTGGTTTGTCCATCTGATAA+AGG | 0.425987 | 3.4:-89371196 | MS.gene054628:CDS |
| GCTGAATTATATGAGATTCA+AGG | 0.430850 | 3.4:-89371013 | MS.gene054628:CDS |
| GGTTCCTTACCCCAAAAGTA+AGG | 0.432228 | 3.4:+89371277 | None:intergenic |
| TCACTTATTTCCACACCAAT+TGG | 0.436714 | 3.4:+89371256 | None:intergenic |
| CCATTGATTGTATACTTCCA+TGG | 0.437221 | 3.4:-89371643 | MS.gene054628:CDS |
| AAGAGAATGATTATGAAAGT+TGG | 0.440131 | 3.4:-89371429 | MS.gene054628:CDS |
| TCCTTTGATTAATCCGTTTG+TGG | 0.442157 | 3.4:-89371164 | MS.gene054628:CDS |
| GCTCCAGGGCTTGAAGGGTT+AGG | 0.452764 | 3.4:-89371136 | MS.gene054628:CDS |
| ATTCTTGGGAAGCAGTTCAA+TGG | 0.455054 | 3.4:-89371480 | MS.gene054628:CDS |
| TCATTGTAAGCGGCTGGAAG+TGG | 0.457974 | 3.4:+89371502 | None:intergenic |
| AGCCGCTTACAATGATTCTT+GGG | 0.464184 | 3.4:-89371494 | MS.gene054628:CDS |
| TCATAGATTTGTCGATGGGT+TGG | 0.464440 | 3.4:+89371847 | None:intergenic |
| AGAGAAGAATGGTGGATAGA+TGG | 0.464480 | 3.4:-89371225 | MS.gene054628:CDS |
| AAAGATATATTGATAGAAAG+AGG | 0.465976 | 3.4:-89371082 | MS.gene054628:CDS |
| CCATGGAAGTATACAATCAA+TGG | 0.470075 | 3.4:+89371643 | None:intergenic |
| GTGGATGTTCCGGTGCTAAC+CGG | 0.472727 | 3.4:+89371521 | None:intergenic |
| CCGTTTGTGGAAGAAGCTCC+AGG | 0.475107 | 3.4:-89371151 | MS.gene054628:CDS |
| ATATATTGGTTAATAGTGGT+TGG | 0.476791 | 3.4:-89371045 | MS.gene054628:CDS |
| CAAGAATCATTGTAAGCGGC+TGG | 0.479330 | 3.4:+89371496 | None:intergenic |
| CTTCTGCTACAAGTTTGTTG+AGG | 0.480079 | 3.4:+89371572 | None:intergenic |
| GGCATTGGCGTCGTTCCTCC+CGG | 0.480972 | 3.4:-89371772 | MS.gene054628:CDS |
| GCGGCTGGAAGTGGATGTTC+CGG | 0.485630 | 3.4:+89371511 | None:intergenic |
| TTGGAGATAACGTTTGTTTG+AGG | 0.489762 | 3.4:+89371742 | None:intergenic |
| CCTGGAGCTTCTTCCACAAA+CGG | 0.490261 | 3.4:+89371151 | None:intergenic |
| GTTTGTTTGAGGATCGATGC+CGG | 0.495904 | 3.4:+89371753 | None:intergenic |
| AACTTCATAGATTTGTCGAT+GGG | 0.496050 | 3.4:+89371843 | None:intergenic |
| TCATCATTTCCTTTATCAGA+TGG | 0.496874 | 3.4:+89371187 | None:intergenic |
| AGAGGATGAAGATATAGAAT+AGG | 0.500789 | 3.4:+89371615 | None:intergenic |
| TTTGTTTGAGGATCGATGCC+GGG | 0.502447 | 3.4:+89371754 | None:intergenic |
| TTCTTGGCAGGTGATAGTGC+AGG | 0.508682 | 3.4:-89371376 | MS.gene054628:CDS |
| GTCGAAAGATATGCCGGCAT+TGG | 0.510442 | 3.4:-89371787 | MS.gene054628:CDS |
| GCTTCACATGCTGTTGAAGA+TGG | 0.513321 | 3.4:-89371454 | MS.gene054628:CDS |
| GGGAGGAACGACGCCAATGC+CGG | 0.515304 | 3.4:+89371774 | None:intergenic |
| CTGAATTATATGAGATTCAA+GGG | 0.517407 | 3.4:-89371012 | MS.gene054628:CDS |
| CTCTTAGCTTTATCACACTC+AGG | 0.520717 | 3.4:+89370962 | None:intergenic |
| ACACCTAACCCTTCAAGCCC+TGG | 0.529370 | 3.4:+89371133 | None:intergenic |
| ATATAGTCTTGCTGTGACAC+CGG | 0.533831 | 3.4:+89371696 | None:intergenic |
| AGCAAACATCATCGCTATCT+CGG | 0.546431 | 3.4:-89371551 | MS.gene054628:CDS |
| TTGGTTAATAGTGGTTGGAA+AGG | 0.546510 | 3.4:-89371040 | MS.gene054628:CDS |
| GAAGAATGGTGGATAGATGG+TGG | 0.548405 | 3.4:-89371222 | MS.gene054628:CDS |
| AAGAAGCTCCAGGGCTTGAA+GGG | 0.550930 | 3.4:-89371141 | MS.gene054628:CDS |
| TCCACAAACGGATTAATCAA+AGG | 0.558343 | 3.4:+89371163 | None:intergenic |
| AAGAATGGTGGATAGATGGT+GGG | 0.558366 | 3.4:-89371221 | MS.gene054628:CDS |
| GAACTTCATAGATTTGTCGA+TGG | 0.569806 | 3.4:+89371842 | None:intergenic |
| GATAGTGCAGGTGCTAACAT+AGG | 0.572065 | 3.4:-89371364 | MS.gene054628:CDS |
| GGTTAATTACCGGTTAGCAC+CGG | 0.599685 | 3.4:-89371530 | MS.gene054628:CDS |
| GGGTAAGGAACCAATTGGTG+TGG | 0.605765 | 3.4:-89371266 | MS.gene054628:CDS |
| TTCCCAAGAATCATTGTAAG+CGG | 0.612607 | 3.4:+89371492 | None:intergenic |
| GGTACCGTCGAAAGATATGC+CGG | 0.612722 | 3.4:-89371793 | MS.gene054628:CDS |
| CGTTTGTGGAAGAAGCTCCA+GGG | 0.617332 | 3.4:-89371150 | MS.gene054628:CDS |
| TCTTTGTGTACACGAAGGTA+GGG | 0.619638 | 3.4:+89371817 | None:intergenic |
| GTTATGGTAAACAGGGTCAG+AGG | 0.624470 | 3.4:+89371597 | None:intergenic |
| TGATGATTTGAAGAGAAGAA+TGG | 0.628091 | 3.4:-89371236 | MS.gene054628:CDS |
| GTCTTTGTGTACACGAAGGT+AGG | 0.633999 | 3.4:+89371816 | None:intergenic |
| TACCTTCGTGTACACAAAGA+CGG | 0.636875 | 3.4:-89371814 | MS.gene054628:CDS |
| TGATTTGAAGAGAAGAATGG+TGG | 0.647899 | 3.4:-89371233 | MS.gene054628:CDS |
| AATGCCGGCATATCTTTCGA+CGG | 0.666567 | 3.4:+89371789 | None:intergenic |
| TGAGGGAGTTATGGTAAACA+GGG | 0.672820 | 3.4:+89371590 | None:intergenic |
| TTGATTGTATACTTCCATGG+TGG | 0.674326 | 3.4:-89371640 | MS.gene054628:CDS |
| GTTTGAGGATCGATGCCGGG+AGG | 0.683731 | 3.4:+89371757 | None:intergenic |
| TTGTGTACACGAAGGTAGGG+AGG | 0.684898 | 3.4:+89371820 | None:intergenic |
| ATATAGAATAGGCTCCACCA+TGG | 0.696977 | 3.4:+89371626 | None:intergenic |
| TACCGTCTTTGTGTACACGA+AGG | 0.725120 | 3.4:+89371812 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAACTTTATCATAATATAT+TGG | - | chr3.4:89371719-89371738 | MS.gene054628:CDS | 10.0% |
| !! | ATTGAAATTATTATCCTTTA+AGG | + | chr3.4:89371451-89371470 | None:intergenic | 15.0% |
| !!! | AATTTCAATTTCAAGATTTT+GGG | - | chr3.4:89371462-89371481 | MS.gene054628:CDS | 15.0% |
| !!! | TAATTTCAATTTCAAGATTT+TGG | - | chr3.4:89371461-89371480 | MS.gene054628:CDS | 15.0% |
| !! | AAAGATATATTGATAGAAAG+AGG | - | chr3.4:89371696-89371715 | MS.gene054628:CDS | 20.0% |
| !!! | CATAATATATTGGTTAATAG+TGG | - | chr3.4:89371729-89371748 | MS.gene054628:CDS | 20.0% |
| ! | AAGAGAATGATTATGAAAGT+TGG | - | chr3.4:89371349-89371368 | MS.gene054628:CDS | 25.0% |
| ! | CTGAATTATATGAGATTCAA+GGG | - | chr3.4:89371766-89371785 | MS.gene054628:CDS | 25.0% |
| !! | ATATATTGGTTAATAGTGGT+TGG | - | chr3.4:89371733-89371752 | MS.gene054628:CDS | 25.0% |
| !! | TGACTTTAACAAAGTTTTCT+TGG | - | chr3.4:89371386-89371405 | MS.gene054628:CDS | 25.0% |
| !!! | TTTTCTGAAGTTGAATTGTT+TGG | + | chr3.4:89371111-89371130 | None:intergenic | 25.0% |
| AACTTCATAGATTTGTCGAT+GGG | + | chr3.4:89370938-89370957 | None:intergenic | 30.0% | |
| AGAGGATGAAGATATAGAAT+AGG | + | chr3.4:89371166-89371185 | None:intergenic | 30.0% | |
| GCTGAATTATATGAGATTCA+AGG | - | chr3.4:89371765-89371784 | MS.gene054628:CDS | 30.0% | |
| TCATCATTTCCTTTATCAGA+TGG | + | chr3.4:89371594-89371613 | None:intergenic | 30.0% | |
| TGATGATTTGAAGAGAAGAA+TGG | - | chr3.4:89371542-89371561 | MS.gene054628:CDS | 30.0% | |
| ! | TTTAACAAAGTTTTCTTGGC+AGG | - | chr3.4:89371390-89371409 | MS.gene054628:CDS | 30.0% |
| GAACTTCATAGATTTGTCGA+TGG | + | chr3.4:89370939-89370958 | None:intergenic | 35.0% | |
| TCACTTATTTCCACACCAAT+TGG | + | chr3.4:89371525-89371544 | None:intergenic | 35.0% | |
| TCCTTTGATTAATCCGTTTG+TGG | - | chr3.4:89371614-89371633 | MS.gene054628:CDS | 35.0% | |
| TGATTTGAAGAGAAGAATGG+TGG | - | chr3.4:89371545-89371564 | MS.gene054628:CDS | 35.0% | |
| TTCCCAAGAATCATTGTAAG+CGG | + | chr3.4:89371289-89371308 | None:intergenic | 35.0% | |
| TTGATTGTATACTTCCATGG+TGG | - | chr3.4:89371138-89371157 | MS.gene054628:CDS | 35.0% | |
| TTGGAGATAACGTTTGTTTG+AGG | + | chr3.4:89371039-89371058 | None:intergenic | 35.0% | |
| TTGGTTAATAGTGGTTGGAA+AGG | - | chr3.4:89371738-89371757 | MS.gene054628:CDS | 35.0% | |
| ! | AGGAAACTACATAGCCTTAA+AGG | - | chr3.4:89371434-89371453 | MS.gene054628:CDS | 35.0% |
| ! | CCATGGAAGTATACAATCAA+TGG | + | chr3.4:89371138-89371157 | None:intergenic | 35.0% |
| ! | CCATTGATTGTATACTTCCA+TGG | - | chr3.4:89371135-89371154 | MS.gene054628:CDS | 35.0% |
| ! | TCATGGTGAATCCTTACTTT+TGG | - | chr3.4:89371490-89371509 | MS.gene054628:CDS | 35.0% |
| !! | ATGGTGAATCCTTACTTTTG+GGG | - | chr3.4:89371492-89371511 | MS.gene054628:CDS | 35.0% |
| !! | CAAGATTTTGGGTCTTATCA+TGG | - | chr3.4:89371473-89371492 | MS.gene054628:CDS | 35.0% |
| !! | CATGGTGAATCCTTACTTTT+GGG | - | chr3.4:89371491-89371510 | MS.gene054628:CDS | 35.0% |
| !! | TCCACAAACGGATTAATCAA+AGG | + | chr3.4:89371618-89371637 | None:intergenic | 35.0% |
| !! | TTCTGCTACAAGTTTGTTGA+GGG | + | chr3.4:89371208-89371227 | None:intergenic | 35.0% |
| !! | TTGGTTTGTCCATCTGATAA+AGG | - | chr3.4:89371582-89371601 | MS.gene054628:CDS | 35.0% |
| AGCAAACATCATCGCTATCT+CGG | - | chr3.4:89371227-89371246 | MS.gene054628:CDS | 40.0% | |
| AGCCGCTTACAATGATTCTT+GGG | - | chr3.4:89371284-89371303 | MS.gene054628:CDS | 40.0% | |
| ATATAGAATAGGCTCCACCA+TGG | + | chr3.4:89371155-89371174 | None:intergenic | 40.0% | |
| ATCACAATCCTCCCAAAAAC+CGG | - | chr3.4:89371063-89371082 | MS.gene054628:CDS | 40.0% | |
| ATTCTTGGGAAGCAGTTCAA+TGG | - | chr3.4:89371298-89371317 | MS.gene054628:CDS | 40.0% | |
| TACCTTCGTGTACACAAAGA+CGG | - | chr3.4:89370964-89370983 | MS.gene054628:CDS | 40.0% | |
| TCATAGATTTGTCGATGGGT+TGG | + | chr3.4:89370934-89370953 | None:intergenic | 40.0% | |
| TCGCTATCTCGGTTAATTAC+CGG | - | chr3.4:89371238-89371257 | MS.gene054628:CDS | 40.0% | |
| TCTTTGTGTACACGAAGGTA+GGG | + | chr3.4:89370964-89370983 | None:intergenic | 40.0% | |
| TGAGGGAGTTATGGTAAACA+GGG | + | chr3.4:89371191-89371210 | None:intergenic | 40.0% | |
| TTGAGGGAGTTATGGTAAAC+AGG | + | chr3.4:89371192-89371211 | None:intergenic | 40.0% | |
| ! | ATATAGTCTTGCTGTGACAC+CGG | + | chr3.4:89371085-89371104 | None:intergenic | 40.0% |
| !! | AAGAATGGTGGATAGATGGT+GGG | - | chr3.4:89371557-89371576 | MS.gene054628:CDS | 40.0% |
| !! | AGAGAAGAATGGTGGATAGA+TGG | - | chr3.4:89371553-89371572 | MS.gene054628:CDS | 40.0% |
| !! | CAAGTTTGTTGAGGGAGTTA+TGG | + | chr3.4:89371200-89371219 | None:intergenic | 40.0% |
| !! | CTCTTAGCTTTATCACACTC+AGG | + | chr3.4:89371819-89371838 | None:intergenic | 40.0% |
| !! | CTTCTGCTACAAGTTTGTTG+AGG | + | chr3.4:89371209-89371228 | None:intergenic | 40.0% |
| !!! | GAATCCTTACTTTTGGGGTA+AGG | - | chr3.4:89371497-89371516 | MS.gene054628:CDS | 40.0% |
| !!! | TTTTGGGGTAAGGAACCAAT+TGG | - | chr3.4:89371507-89371526 | MS.gene054628:CDS | 40.0% |
| AATGCCGGCATATCTTTCGA+CGG | + | chr3.4:89370992-89371011 | None:intergenic | 45.0% | |
| CAAGAATCATTGTAAGCGGC+TGG | + | chr3.4:89371285-89371304 | None:intergenic | 45.0% | |
| CAGCCGCTTACAATGATTCT+TGG | - | chr3.4:89371283-89371302 | MS.gene054628:CDS | 45.0% | |
| GATAGTGCAGGTGCTAACAT+AGG | - | chr3.4:89371414-89371433 | MS.gene054628:CDS | 45.0% | |
| GCTTCACATGCTGTTGAAGA+TGG | - | chr3.4:89371324-89371343 | MS.gene054628:CDS | 45.0% | |
| GGTTCCTTACCCCAAAAGTA+AGG | + | chr3.4:89371504-89371523 | None:intergenic | 45.0% | |
| GTCTTTGTGTACACGAAGGT+AGG | + | chr3.4:89370965-89370984 | None:intergenic | 45.0% | |
| GTTATGGTAAACAGGGTCAG+AGG | + | chr3.4:89371184-89371203 | None:intergenic | 45.0% | |
| GTTTGTTTGAGGATCGATGC+CGG | + | chr3.4:89371028-89371047 | None:intergenic | 45.0% | |
| TACCGTCTTTGTGTACACGA+AGG | + | chr3.4:89370969-89370988 | None:intergenic | 45.0% | |
| TGGGAGGATTGTGATGTCTT+TGG | + | chr3.4:89371058-89371077 | None:intergenic | 45.0% | |
| TTTGTTTGAGGATCGATGCC+GGG | + | chr3.4:89371027-89371046 | None:intergenic | 45.0% | |
| ! | GGTTAATTACCGGTTAGCAC+CGG | - | chr3.4:89371248-89371267 | MS.gene054628:CDS | 45.0% |
| !! | GAAGAATGGTGGATAGATGG+TGG | - | chr3.4:89371556-89371575 | MS.gene054628:CDS | 45.0% |
| !!! | TTGCTGTGACACCGGTTTTT+GGG | + | chr3.4:89371077-89371096 | None:intergenic | 45.0% |
| AAGAAGCTCCAGGGCTTGAA+GGG | - | chr3.4:89371637-89371656 | MS.gene054628:CDS | 50.0% | |
| CCTGGAGCTTCTTCCACAAA+CGG | + | chr3.4:89371630-89371649 | None:intergenic | 50.0% | |
| CGTTTGTGGAAGAAGCTCCA+GGG | - | chr3.4:89371628-89371647 | MS.gene054628:CDS | 50.0% | |
| GGGTAAGGAACCAATTGGTG+TGG | - | chr3.4:89371512-89371531 | MS.gene054628:CDS | 50.0% | |
| GGTACCGTCGAAAGATATGC+CGG | - | chr3.4:89370985-89371004 | MS.gene054628:CDS | 50.0% | |
| GTCGAAAGATATGCCGGCAT+TGG | - | chr3.4:89370991-89371010 | MS.gene054628:CDS | 50.0% | |
| TCATTGTAAGCGGCTGGAAG+TGG | + | chr3.4:89371279-89371298 | None:intergenic | 50.0% | |
| TTGTGTACACGAAGGTAGGG+AGG | + | chr3.4:89370961-89370980 | None:intergenic | 50.0% | |
| ! | TTCTTGGCAGGTGATAGTGC+AGG | - | chr3.4:89371402-89371421 | MS.gene054628:CDS | 50.0% |
| !! | GGTGGATAGATGGTGGGAAT+TGG | - | chr3.4:89371563-89371582 | MS.gene054628:CDS | 50.0% |
| !!! | CTTGCTGTGACACCGGTTTT+TGG | + | chr3.4:89371078-89371097 | None:intergenic | 50.0% |
| ACACCTAACCCTTCAAGCCC+TGG | + | chr3.4:89371648-89371667 | None:intergenic | 55.0% | |
| CCGTTTGTGGAAGAAGCTCC+AGG | - | chr3.4:89371627-89371646 | MS.gene054628:CDS | 55.0% | |
| GAAGAAGCTCCAGGGCTTGA+AGG | - | chr3.4:89371636-89371655 | MS.gene054628:CDS | 55.0% | |
| ! | GTGGATGTTCCGGTGCTAAC+CGG | + | chr3.4:89371260-89371279 | None:intergenic | 55.0% |
| !!! | CTGTGACACCGGTTTTTGGG+AGG | + | chr3.4:89371074-89371093 | None:intergenic | 55.0% |
| GCGGCTGGAAGTGGATGTTC+CGG | + | chr3.4:89371270-89371289 | None:intergenic | 60.0% | |
| GCTCCAGGGCTTGAAGGGTT+AGG | - | chr3.4:89371642-89371661 | MS.gene054628:CDS | 60.0% | |
| GTTTGAGGATCGATGCCGGG+AGG | + | chr3.4:89371024-89371043 | None:intergenic | 60.0% | |
| GGGAGGAACGACGCCAATGC+CGG | + | chr3.4:89371007-89371026 | None:intergenic | 65.0% | |
| !! | GGCATTGGCGTCGTTCCTCC+CGG | - | chr3.4:89371006-89371025 | MS.gene054628:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 89370925 | 89371875 | 89370925 | ID=MS.gene054628 |
| chr3.4 | mRNA | 89370925 | 89371875 | 89370925 | ID=MS.gene054628.t1;Parent=MS.gene054628 |
| chr3.4 | exon | 89370925 | 89371875 | 89370925 | ID=MS.gene054628.t1.exon1;Parent=MS.gene054628.t1 |
| chr3.4 | CDS | 89370925 | 89371875 | 89370925 | ID=cds.MS.gene054628.t1;Parent=MS.gene054628.t1 |
| Gene Sequence |
| Protein sequence |
