Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39038.t1 | XP_003624992.2 | 100 | 660 | 0 | 0 | 1 | 660 | 67 | 726 | 0.00E+00 | 1272.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39038.t1 | Q5YLB4 | 82.1 | 660 | 118 | 0 | 1 | 660 | 72 | 731 | 9.9e-312 | 1070.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39038.t1 | G7KQS0 | 100.0 | 660 | 0 | 0 | 1 | 660 | 67 | 726 | 0.0e+00 | 1272.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene39038 | 0.841126 | 5.74E-58 | -1.69E-46 |
| MS.gene049758 | MS.gene39038 | 0.84854 | 5.74E-60 | -1.69E-46 |
| MS.gene050099 | MS.gene39038 | 0.861785 | 8.04E-64 | -1.69E-46 |
| MS.gene050128 | MS.gene39038 | 0.812993 | 3.21E-51 | -1.69E-46 |
| MS.gene050301 | MS.gene39038 | 0.840905 | 6.56E-58 | -1.69E-46 |
| MS.gene050642 | MS.gene39038 | 0.801644 | 8.17E-49 | -1.69E-46 |
| MS.gene051471 | MS.gene39038 | 0.835459 | 1.66E-56 | -1.69E-46 |
| MS.gene051662 | MS.gene39038 | 0.878702 | 2.27E-69 | -1.69E-46 |
| MS.gene051663 | MS.gene39038 | 0.865495 | 5.67E-65 | -1.69E-46 |
| MS.gene051860 | MS.gene39038 | 0.800908 | 1.16E-48 | -1.69E-46 |
| MS.gene052078 | MS.gene39038 | 0.816416 | 5.59E-52 | -1.69E-46 |
| MS.gene052178 | MS.gene39038 | 0.835973 | 1.23E-56 | -1.69E-46 |
| MS.gene052256 | MS.gene39038 | 0.813643 | 2.31E-51 | -1.69E-46 |
| MS.gene052600 | MS.gene39038 | 0.808167 | 3.54E-50 | -1.69E-46 |
| MS.gene053557 | MS.gene39038 | 0.813765 | 2.17E-51 | -1.69E-46 |
| MS.gene053559 | MS.gene39038 | 0.83215 | 1.11E-55 | -1.69E-46 |
| MS.gene053836 | MS.gene39038 | 0.847143 | 1.39E-59 | -1.69E-46 |
| MS.gene054942 | MS.gene39038 | 0.847486 | 1.12E-59 | -1.69E-46 |
| MS.gene055133 | MS.gene39038 | 0.824581 | 7.47E-54 | -1.69E-46 |
| MS.gene055390 | MS.gene39038 | 0.851091 | 1.11E-60 | -1.69E-46 |
| MS.gene055422 | MS.gene39038 | 0.879864 | 8.79E-70 | -1.69E-46 |
| MS.gene055428 | MS.gene39038 | 0.809004 | 2.34E-50 | -1.69E-46 |
| MS.gene057121 | MS.gene39038 | 0.833279 | 5.84E-56 | -1.69E-46 |
| MS.gene057260 | MS.gene39038 | 0.819894 | 9.14E-53 | -1.69E-46 |
| MS.gene057439 | MS.gene39038 | 0.830714 | 2.51E-55 | -1.69E-46 |
| MS.gene057754 | MS.gene39038 | 0.823254 | 1.53E-53 | -1.69E-46 |
| MS.gene058002 | MS.gene39038 | 0.838893 | 2.19E-57 | -1.69E-46 |
| MS.gene05811 | MS.gene39038 | 0.851717 | 7.40E-61 | -1.69E-46 |
| MS.gene058833 | MS.gene39038 | 0.812648 | 3.81E-51 | -1.69E-46 |
| MS.gene058845 | MS.gene39038 | 0.815349 | 9.67E-52 | -1.69E-46 |
| MS.gene05907 | MS.gene39038 | 0.809749 | 1.62E-50 | -1.69E-46 |
| MS.gene059518 | MS.gene39038 | 0.834366 | 3.12E-56 | -1.69E-46 |
| MS.gene059597 | MS.gene39038 | 0.802942 | 4.42E-49 | -1.69E-46 |
| MS.gene059708 | MS.gene39038 | 0.809287 | 2.04E-50 | -1.69E-46 |
| MS.gene05984 | MS.gene39038 | 0.834695 | 2.58E-56 | -1.69E-46 |
| MS.gene059894 | MS.gene39038 | 0.82761 | 1.42E-54 | -1.69E-46 |
| MS.gene060476 | MS.gene39038 | 0.839374 | 1.65E-57 | -1.69E-46 |
| MS.gene06090 | MS.gene39038 | 0.813439 | 2.56E-51 | -1.69E-46 |
| MS.gene061049 | MS.gene39038 | 0.801519 | 8.67E-49 | -1.69E-46 |
| MS.gene061113 | MS.gene39038 | 0.813233 | 2.84E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39038.t1 | MTR_7g089790 | 100.000 | 660 | 0 | 0 | 1 | 660 | 67 | 726 | 0.0 | 1363 |
| MS.gene39038.t1 | MTR_3g031040 | 25.000 | 572 | 381 | 20 | 48 | 601 | 68 | 609 | 8.00e-30 | 127 |
| MS.gene39038.t1 | MTR_3g085840 | 24.116 | 622 | 376 | 24 | 25 | 597 | 8 | 582 | 2.65e-28 | 122 |
| MS.gene39038.t1 | MTR_0756s0010 | 26.804 | 291 | 165 | 10 | 290 | 568 | 482 | 736 | 4.60e-17 | 85.9 |
| MS.gene39038.t1 | MTR_1g051315 | 25.714 | 280 | 174 | 9 | 290 | 565 | 241 | 490 | 2.88e-16 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39038.t1 | AT5G04130 | 80.728 | 659 | 127 | 0 | 2 | 660 | 74 | 732 | 0.0 | 1093 |
| MS.gene39038.t1 | AT3G10270 | 81.402 | 656 | 122 | 0 | 5 | 660 | 85 | 740 | 0.0 | 1066 |
| MS.gene39038.t1 | AT3G10270 | 81.402 | 656 | 122 | 0 | 5 | 660 | 75 | 730 | 0.0 | 1065 |
| MS.gene39038.t1 | AT5G04130 | 79.224 | 438 | 91 | 0 | 2 | 439 | 74 | 511 | 0.0 | 709 |
| MS.gene39038.t1 | AT5G04130 | 79.224 | 438 | 91 | 0 | 2 | 439 | 74 | 511 | 0.0 | 709 |
| MS.gene39038.t1 | AT5G04110 | 58.730 | 252 | 94 | 3 | 216 | 464 | 17 | 261 | 4.51e-92 | 296 |
| MS.gene39038.t1 | AT5G04110 | 58.730 | 252 | 93 | 4 | 216 | 464 | 17 | 260 | 6.88e-91 | 291 |
| MS.gene39038.t1 | AT5G04110 | 58.730 | 252 | 93 | 4 | 216 | 464 | 17 | 260 | 1.61e-90 | 292 |
| MS.gene39038.t1 | AT5G04110 | 58.730 | 252 | 93 | 4 | 216 | 464 | 17 | 260 | 1.61e-90 | 292 |
| MS.gene39038.t1 | AT3G23890 | 25.042 | 591 | 379 | 23 | 31 | 597 | 68 | 618 | 4.90e-32 | 134 |
| MS.gene39038.t1 | AT3G23890 | 25.042 | 591 | 379 | 23 | 31 | 597 | 68 | 618 | 5.62e-32 | 133 |
Find 156 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATCAGGTTTATGAAATTT+TGG | 0.159609 | 7.3:+19228774 | MS.gene39038:intron |
| CAAGACCAAGGATTAAATTT+TGG | 0.168010 | 7.3:-19236574 | None:intergenic |
| AGAATATCTTACCGAGTATT+TGG | 0.173108 | 7.3:+19234826 | MS.gene39038:CDS |
| AAGGAACACGTATCAAATTT+TGG | 0.211413 | 7.3:+19230016 | MS.gene39038:CDS |
| TGTCCTTCAAACTCTGGATT+TGG | 0.228780 | 7.3:-19234624 | None:intergenic |
| TTGCACGCTGGTGGAAAATT+TGG | 0.282779 | 7.3:+19229532 | MS.gene39038:CDS |
| AACAGTGGCTACTCTGTTTC+AGG | 0.289484 | 7.3:+19229562 | MS.gene39038:CDS |
| TCAGTAGCAGAGTTCGAATA+TGG | 0.289875 | 7.3:-19237243 | None:intergenic |
| TTATGGTTCTGATCAAATTC+AGG | 0.299995 | 7.3:+19228076 | MS.gene39038:CDS |
| AATGACAGTTCTAAAGCTTA+TGG | 0.304633 | 7.3:+19228059 | MS.gene39038:CDS |
| TTCTTCAATAACCTCTGTTC+TGG | 0.306840 | 7.3:-19237898 | None:intergenic |
| AAGCTTTCATACCATCGATA+TGG | 0.316017 | 7.3:-19233757 | None:intergenic |
| CCCGCGCGGGTTGCATCATT+TGG | 0.316736 | 7.3:+19228669 | MS.gene39038:CDS |
| GTCCTTCAAACTCTGGATTT+GGG | 0.319431 | 7.3:-19234623 | None:intergenic |
| AAAAGGCCTGGGATGTATAT+TGG | 0.326533 | 7.3:+19228637 | MS.gene39038:CDS |
| AAAGCAGATTTCTTTGTAGT+TGG | 0.341350 | 7.3:-19229380 | None:intergenic |
| TGCAGGCTATTCTCCCTTTG+AGG | 0.348316 | 7.3:+19236492 | MS.gene39038:intron |
| ACTACTTTACCTTTGGGTTA+AGG | 0.353650 | 7.3:-19230214 | None:intergenic |
| GCATGTTGTATGATGCATTA+GGG | 0.354230 | 7.3:-19237615 | None:intergenic |
| TTTGTCTCATTAGGCAGCTT+TGG | 0.359300 | 7.3:+19235032 | MS.gene39038:intron |
| GACTGGACCCTGTAAGAAAA+AGG | 0.359626 | 7.3:+19228620 | MS.gene39038:CDS |
| TGCATGTTGTATGATGCATT+AGG | 0.366179 | 7.3:-19237616 | None:intergenic |
| CAAAATTTAATCCTTGGTCT+TGG | 0.385483 | 7.3:+19236575 | MS.gene39038:CDS |
| AACAGTATGGCGTGAAGGGC+TGG | 0.389354 | 7.3:+19229912 | MS.gene39038:CDS |
| TTGAGATCTTCATCTCTTCC+TGG | 0.393346 | 7.3:+19235096 | MS.gene39038:CDS |
| TAAAGCTCTGAATGCTTTCA+AGG | 0.394460 | 7.3:+19234883 | MS.gene39038:CDS |
| GCAGGCTATTCTCCCTTTGA+GGG | 0.403577 | 7.3:+19236493 | MS.gene39038:intron |
| GAGATCCAAAATTTAATCCT+TGG | 0.403824 | 7.3:+19236569 | MS.gene39038:CDS |
| TCAACCACTTTCCGCACCTC+TGG | 0.409033 | 7.3:-19234791 | None:intergenic |
| TTTCCTCCCTTATGGGTGCT+CGG | 0.417292 | 7.3:+19237959 | MS.gene39038:CDS |
| TTAATCCTTGGTCTTGGTCT+CGG | 0.420394 | 7.3:+19236581 | MS.gene39038:CDS |
| TCTAATGAGTATTTCTATGC+TGG | 0.421243 | 7.3:+19231611 | MS.gene39038:CDS |
| CAGAGAGCTTTGTTTGATGA+AGG | 0.424517 | 7.3:+19237402 | MS.gene39038:intron |
| TACGATTGCGCTTCGGAAAG+AGG | 0.426290 | 7.3:+19231565 | MS.gene39038:CDS |
| AGCACTGAATCAAGAACATC+TGG | 0.429077 | 7.3:-19234857 | None:intergenic |
| TTTGTTTGTCCTTCAAACTC+TGG | 0.431218 | 7.3:-19234630 | None:intergenic |
| TGTTGCATAAAGACGAGGTT+GGG | 0.433775 | 7.3:+19234764 | MS.gene39038:intron |
| AGGTCGTGATAGGCGCTTCC+AGG | 0.437540 | 7.3:+19235714 | MS.gene39038:CDS |
| CATAGAAATACTCATTAGAT+TGG | 0.437881 | 7.3:-19231607 | None:intergenic |
| CATGATTGATCTTGATCAGC+TGG | 0.439797 | 7.3:+19238341 | MS.gene39038:CDS |
| TTGACCGATGCTGATGTAGA+TGG | 0.439815 | 7.3:+19237217 | MS.gene39038:CDS |
| TCTGTTTCAGGAGGTTTACA+TGG | 0.440691 | 7.3:+19229574 | MS.gene39038:CDS |
| GAACAATCCGCGAGTTTGCC+AGG | 0.442861 | 7.3:-19235114 | None:intergenic |
| AAAATTTGATACGTGTTCCT+TGG | 0.443461 | 7.3:-19230014 | None:intergenic |
| ACACAATAGCTGGACGCATA+AGG | 0.444974 | 7.3:+19230180 | MS.gene39038:CDS |
| TGCTTTAGAGACAGTGTTGA+CGG | 0.445996 | 7.3:+19229397 | MS.gene39038:CDS |
| GCAATTTCTTAACACGGATA+AGG | 0.447284 | 7.3:+19231652 | MS.gene39038:CDS |
| CCATATGAACCTTCTTTGTC+AGG | 0.448685 | 7.3:-19230039 | None:intergenic |
| TCAGGAGGTTTACATGGTGT+TGG | 0.449866 | 7.3:+19229580 | MS.gene39038:CDS |
| CTAATGAGTATTTCTATGCT+GGG | 0.453046 | 7.3:+19231612 | MS.gene39038:CDS |
| TTACTTGTGTAGGTACTTGA+AGG | 0.453872 | 7.3:+19228598 | MS.gene39038:intron |
| TGGTGTTCCACCACTTTACA+AGG | 0.453906 | 7.3:+19237437 | MS.gene39038:CDS |
| AGTTTCAGAAAAGAAATAGA+TGG | 0.459840 | 7.3:+19233347 | MS.gene39038:CDS |
| AAATAATAATCTTGTGATAA+CGG | 0.460897 | 7.3:-19237195 | None:intergenic |
| GTGCTAAGCAAGGTCGTGAT+AGG | 0.462678 | 7.3:+19235704 | MS.gene39038:CDS |
| GGAAAACACAATATTTGCTT+CGG | 0.469868 | 7.3:-19237941 | None:intergenic |
| TTCCTCCCTTATGGGTGCTC+GGG | 0.469917 | 7.3:+19237960 | MS.gene39038:CDS |
| AACATATTCTCGTGGGAAGC+CGG | 0.473111 | 7.3:+19229945 | MS.gene39038:CDS |
| ATTTATATCAGGTGGATGTT+CGG | 0.481417 | 7.3:+19238292 | MS.gene39038:intron |
| TGTAGCTTACGATTGCGCTT+CGG | 0.481540 | 7.3:+19231558 | MS.gene39038:intron |
| ATAGTTGAAGGTGATTCAGC+TGG | 0.482769 | 7.3:+19235676 | MS.gene39038:CDS |
| GGGATGTATATTGGAAGCAC+TGG | 0.484327 | 7.3:+19228646 | MS.gene39038:CDS |
| AGCTTTCATACCATCGATAT+GGG | 0.486541 | 7.3:-19233756 | None:intergenic |
| TTTGAGTACAACACAATAGC+TGG | 0.487175 | 7.3:+19230170 | MS.gene39038:CDS |
| CACAATAGCTGGACGCATAA+GGG | 0.490264 | 7.3:+19230181 | MS.gene39038:CDS |
| ATGTAAAACAACATCAATCT+TGG | 0.490376 | 7.3:-19228833 | None:intergenic |
| ACATTACCCGAGCACCCATA+AGG | 0.493306 | 7.3:-19237966 | None:intergenic |
| AGAGATATACCACAGTCTTC+AGG | 0.498262 | 7.3:-19235147 | None:intergenic |
| AGCATTGCTGACAATGGTCG+CGG | 0.500989 | 7.3:+19228871 | MS.gene39038:CDS |
| GTTGTCTCCCACAGTTGTAA+AGG | 0.501371 | 7.3:-19237868 | None:intergenic |
| AAAGAAATCAAAAGTTATCA+AGG | 0.505346 | 7.3:+19233808 | MS.gene39038:CDS |
| ACTGAAATCGGCAGGTTACA+AGG | 0.507108 | 7.3:+19237530 | MS.gene39038:intron |
| CAGTAGCAGAGTTCGAATAT+GGG | 0.513838 | 7.3:-19237242 | None:intergenic |
| TAACCTCTGTTCTGGATCCA+TGG | 0.515088 | 7.3:-19237890 | None:intergenic |
| TTGCAGATCTTGCACGCTGG+TGG | 0.517780 | 7.3:+19229523 | MS.gene39038:intron |
| TAGTTGAAGGTGATTCAGCT+GGG | 0.520256 | 7.3:+19235677 | MS.gene39038:CDS |
| TTCAGAATCTTACCCCTCAA+AGG | 0.524421 | 7.3:-19236506 | None:intergenic |
| AGCTGGACGCATAAGGGAGT+TGG | 0.528020 | 7.3:+19230187 | MS.gene39038:CDS |
| GCATACTCTGATACAATACT+AGG | 0.530190 | 7.3:+19233698 | MS.gene39038:CDS |
| ATCTCTTCCTGGCAAACTCG+CGG | 0.533566 | 7.3:+19235107 | MS.gene39038:CDS |
| GCTGTTGATGAAGCTCAAGC+TGG | 0.534932 | 7.3:+19228802 | MS.gene39038:CDS |
| TGTGTAGGTACTTGAAGGAC+TGG | 0.535312 | 7.3:+19228603 | MS.gene39038:intron |
| AGAGGACAATGATCCAGAAA+AGG | 0.537761 | 7.3:+19231583 | MS.gene39038:CDS |
| CACGCTGGTGGAAAATTTGG+TGG | 0.538212 | 7.3:+19229535 | MS.gene39038:CDS |
| TACAACATGCAAAGGTTCAA+AGG | 0.538411 | 7.3:+19237628 | MS.gene39038:CDS |
| TGGTCTTGGTCTCGGAGTGA+AGG | 0.539696 | 7.3:+19236589 | MS.gene39038:CDS |
| GAAAAGGATATTACTCTAAG+TGG | 0.544727 | 7.3:+19234555 | MS.gene39038:CDS |
| CATTACCCGAGCACCCATAA+GGG | 0.549853 | 7.3:-19237965 | None:intergenic |
| GTCCCAAATCCAGAGTTTGA+AGG | 0.550348 | 7.3:+19234621 | MS.gene39038:CDS |
| AAATCCAGAGGTGCGGAAAG+TGG | 0.550752 | 7.3:+19234787 | MS.gene39038:CDS |
| AGGCACTAGAGGTAACAGTA+TGG | 0.552404 | 7.3:+19229899 | MS.gene39038:intron |
| TCAGAATCTTACCCCTCAAA+GGG | 0.554307 | 7.3:-19236505 | None:intergenic |
| AGGTAACAGTATGGCGTGAA+GGG | 0.554577 | 7.3:+19229908 | MS.gene39038:CDS |
| TTGGAAGCACTGGCCCGCGC+GGG | 0.559486 | 7.3:+19228656 | MS.gene39038:CDS |
| GAGGTTATTGAAGAAGTTGA+CGG | 0.561393 | 7.3:+19237906 | MS.gene39038:CDS |
| CCAAATGATGCAACCCGCGC+GGG | 0.564692 | 7.3:-19228669 | None:intergenic |
| AACATGTGTTGTCTCAGTCA+AGG | 0.567792 | 7.3:+19234599 | MS.gene39038:CDS |
| CAGGCTATTCTCCCTTTGAG+GGG | 0.567795 | 7.3:+19236494 | MS.gene39038:intron |
| TCCAACTCCACAGGCACTAG+AGG | 0.567807 | 7.3:+19229888 | MS.gene39038:intron |
| GATTCTGAACATTGAAAGGA+GGG | 0.574792 | 7.3:+19236520 | MS.gene39038:CDS |
| GCATTGCTGACAATGGTCGC+GGG | 0.575570 | 7.3:+19228872 | MS.gene39038:CDS |
| CTGAAATCGGCAGGTTACAA+GGG | 0.576583 | 7.3:+19237531 | MS.gene39038:intron |
| ATATCAGGTGGATGTTCGGA+AGG | 0.578243 | 7.3:+19238296 | MS.gene39038:intron |
| GATGATGCCTTTACAACTGT+GGG | 0.578912 | 7.3:+19237861 | MS.gene39038:CDS |
| GTAAGATTCTGAACATTGAA+AGG | 0.581320 | 7.3:+19236516 | MS.gene39038:CDS |
| TGTTGTTAACGCCTTGTCTG+AGG | 0.583222 | 7.3:+19229609 | MS.gene39038:CDS |
| AGTGGAGAGCATGTGAGAGA+AGG | 0.583912 | 7.3:+19234573 | MS.gene39038:CDS |
| TCAAGGCAAACCTTGTAAAG+TGG | 0.585584 | 7.3:-19237447 | None:intergenic |
| GTTGGCTTTCCTTAACCCAA+AGG | 0.585656 | 7.3:+19230205 | MS.gene39038:CDS |
| GAGGTAACAGTATGGCGTGA+AGG | 0.587049 | 7.3:+19229907 | MS.gene39038:CDS |
| GATGAAGGTTACATATACGT+TGG | 0.588169 | 7.3:+19237417 | MS.gene39038:CDS |
| ATTGGAAGCACTGGCCCGCG+CGG | 0.589460 | 7.3:+19228655 | MS.gene39038:CDS |
| TAATGAGTATTTCTATGCTG+GGG | 0.590247 | 7.3:+19231613 | MS.gene39038:CDS |
| GTAGTTGGATGCATGTCGGT+AGG | 0.591424 | 7.3:-19229365 | None:intergenic |
| TACACACAAACATATTCTCG+TGG | 0.596845 | 7.3:+19229937 | MS.gene39038:CDS |
| ACAAGAACACTAAATAGTCT+CGG | 0.596868 | 7.3:+19233785 | MS.gene39038:CDS |
| ATGCATCATACAACATGCAA+AGG | 0.597009 | 7.3:+19237620 | MS.gene39038:CDS |
| TTGTTGCATAAAGACGAGGT+TGG | 0.601504 | 7.3:+19234763 | MS.gene39038:intron |
| GTGCTTCCAATATACATCCC+AGG | 0.604777 | 7.3:-19228643 | None:intergenic |
| GGCACCATCTACATCAGCAT+CGG | 0.605600 | 7.3:-19237221 | None:intergenic |
| CTTTGTAGTTGGATGCATGT+CGG | 0.606927 | 7.3:-19229369 | None:intergenic |
| AATGAGTATTTCTATGCTGG+GGG | 0.609030 | 7.3:+19231614 | MS.gene39038:CDS |
| AGGCAAACCTTGTAAAGTGG+TGG | 0.609917 | 7.3:-19237444 | None:intergenic |
| ACCATTGTCAGCAATGCTGA+CGG | 0.614856 | 7.3:-19228866 | None:intergenic |
| AATAGTATACGCACTGTCGA+CGG | 0.616506 | 7.3:+19233728 | MS.gene39038:CDS |
| TCCGTCAGCATTGCTGACAA+TGG | 0.616630 | 7.3:+19228865 | MS.gene39038:CDS |
| ACACAGTTCAGAGTTGTCAC+CGG | 0.623220 | 7.3:-19229964 | None:intergenic |
| TGGATGCAGTTCCAAATACT+CGG | 0.624680 | 7.3:-19234837 | None:intergenic |
| AGAGTTTGAAGGACAAACAA+AGG | 0.625879 | 7.3:+19234632 | MS.gene39038:CDS |
| ATATGTGCAATTTCTTAACA+CGG | 0.626888 | 7.3:+19231646 | MS.gene39038:CDS |
| AGATTCTGAACATTGAAAGG+AGG | 0.630976 | 7.3:+19236519 | MS.gene39038:CDS |
| GACGGTGGCACCCATATCGA+TGG | 0.634464 | 7.3:+19233746 | MS.gene39038:CDS |
| AGTGGCTACTCTGTTTCAGG+AGG | 0.634936 | 7.3:+19229565 | MS.gene39038:CDS |
| AGTTGAAGGTGATTCAGCTG+GGG | 0.636553 | 7.3:+19235678 | MS.gene39038:CDS |
| AGATGATGCCTTTACAACTG+TGG | 0.639512 | 7.3:+19237860 | MS.gene39038:CDS |
| ACACACAAACATATTCTCGT+GGG | 0.640066 | 7.3:+19229938 | MS.gene39038:CDS |
| CAGTTGATATAGCTTTGCAA+TGG | 0.641471 | 7.3:+19233375 | MS.gene39038:CDS |
| ACAACTGTGGGAGACAACCA+TGG | 0.641810 | 7.3:+19237873 | MS.gene39038:CDS |
| GTACTCAAATTCAATAGCGG+TGG | 0.644121 | 7.3:-19230156 | None:intergenic |
| ACCAAATGATGCAACCCGCG+CGG | 0.647601 | 7.3:-19228670 | None:intergenic |
| TGAAATCGGCAGGTTACAAG+GGG | 0.647860 | 7.3:+19237532 | MS.gene39038:intron |
| TTCGAAAATAAAGATCGCCA+AGG | 0.647900 | 7.3:+19229997 | MS.gene39038:CDS |
| CATGTTGTATGATGCATTAG+GGG | 0.650685 | 7.3:-19237614 | None:intergenic |
| GTTGTACTCAAATTCAATAG+CGG | 0.652626 | 7.3:-19230159 | None:intergenic |
| AAATTTGGTGGCATCAACAG+TGG | 0.656089 | 7.3:+19229547 | MS.gene39038:CDS |
| ACTTTGCAGATCTTGCACGC+TGG | 0.658529 | 7.3:+19229520 | MS.gene39038:intron |
| GTTGAAGGTGATTCAGCTGG+GGG | 0.658831 | 7.3:+19235679 | MS.gene39038:CDS |
| AGGAAGATGTACCTCAGACA+AGG | 0.662689 | 7.3:-19229620 | None:intergenic |
| GGTTGGGAAATCCAGAGGTG+CGG | 0.666328 | 7.3:+19234780 | MS.gene39038:CDS |
| CATTGCTGACAATGGTCGCG+GGG | 0.666738 | 7.3:+19228873 | MS.gene39038:CDS |
| GACGAGGTTGGGAAATCCAG+AGG | 0.668643 | 7.3:+19234775 | MS.gene39038:intron |
| AGTATACGCACTGTCGACGG+TGG | 0.670255 | 7.3:+19233731 | MS.gene39038:CDS |
| TACCCGAGCACCCATAAGGG+AGG | 0.681093 | 7.3:-19237962 | None:intergenic |
| TCATCAAATCCTGAAGACTG+TGG | 0.689684 | 7.3:+19235138 | MS.gene39038:CDS |
| TCACTCCGAGACCAAGACCA+AGG | 0.700791 | 7.3:-19236586 | None:intergenic |
| CAACCATGGATCCAGAACAG+AGG | 0.750984 | 7.3:+19237887 | MS.gene39038:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 19228023 | 19238371 | 19228023 | ID=MS.gene39038 |
| chr7.3 | mRNA | 19228023 | 19238371 | 19228023 | ID=MS.gene39038.t1;Parent=MS.gene39038 |
| chr7.3 | exon | 19228023 | 19228097 | 19228023 | ID=MS.gene39038.t1.exon1;Parent=MS.gene39038.t1 |
| chr7.3 | CDS | 19228023 | 19228097 | 19228023 | ID=cds.MS.gene39038.t1;Parent=MS.gene39038.t1 |
| chr7.3 | exon | 19228610 | 19228690 | 19228610 | ID=MS.gene39038.t1.exon2;Parent=MS.gene39038.t1 |
| chr7.3 | CDS | 19228610 | 19228690 | 19228610 | ID=cds.MS.gene39038.t1;Parent=MS.gene39038.t1 |
| chr7.3 | exon | 19228781 | 19228894 | 19228781 | ID=MS.gene39038.t1.exon3;Parent=MS.gene39038.t1 |
| chr7.3 | CDS | 19228781 | 19228894 | 19228781 | ID=cds.MS.gene39038.t1;Parent=MS.gene39038.t1 |
| chr7.3 | exon | 19229362 | 19229418 | 19229362 | ID=MS.gene39038.t1.exon4;Parent=MS.gene39038.t1 |
| chr7.3 | CDS | 19229362 | 19229418 | 19229362 | ID=cds.MS.gene39038.t1;Parent=MS.gene39038.t1 |
| chr7.3 | exon | 19229529 | 19229630 | 19229529 | ID=MS.gene39038.t1.exon5;Parent=MS.gene39038.t1 |
| chr7.3 | CDS | 19229529 | 19229630 | 19229529 | ID=cds.MS.gene39038.t1;Parent=MS.gene39038.t1 |
| chr7.3 | exon | 19229901 | 19230051 | 19229901 | ID=MS.gene39038.t1.exon6;Parent=MS.gene39038.t1 |
| chr7.3 | CDS | 19229901 | 19230051 | 19229901 | ID=cds.MS.gene39038.t1;Parent=MS.gene39038.t1 |
| chr7.3 | exon | 19230150 | 19230226 | 19230150 | ID=MS.gene39038.t1.exon7;Parent=MS.gene39038.t1 |
| chr7.3 | CDS | 19230150 | 19230226 | 19230150 | ID=cds.MS.gene39038.t1;Parent=MS.gene39038.t1 |
| chr7.3 | exon | 19231563 | 19231673 | 19231563 | ID=MS.gene39038.t1.exon8;Parent=MS.gene39038.t1 |
| chr7.3 | CDS | 19231563 | 19231673 | 19231563 | ID=cds.MS.gene39038.t1;Parent=MS.gene39038.t1 |
| chr7.3 | exon | 19233326 | 19233396 | 19233326 | ID=MS.gene39038.t1.exon9;Parent=MS.gene39038.t1 |
| chr7.3 | CDS | 19233326 | 19233396 | 19233326 | ID=cds.MS.gene39038.t1;Parent=MS.gene39038.t1 |
| chr7.3 | exon | 19233688 | 19233829 | 19233688 | ID=MS.gene39038.t1.exon10;Parent=MS.gene39038.t1 |
| chr7.3 | CDS | 19233688 | 19233829 | 19233688 | ID=cds.MS.gene39038.t1;Parent=MS.gene39038.t1 |
| chr7.3 | exon | 19234555 | 19234653 | 19234555 | ID=MS.gene39038.t1.exon11;Parent=MS.gene39038.t1 |
| chr7.3 | CDS | 19234555 | 19234653 | 19234555 | ID=cds.MS.gene39038.t1;Parent=MS.gene39038.t1 |
| chr7.3 | exon | 19234776 | 19234904 | 19234776 | ID=MS.gene39038.t1.exon12;Parent=MS.gene39038.t1 |
| chr7.3 | CDS | 19234776 | 19234904 | 19234776 | ID=cds.MS.gene39038.t1;Parent=MS.gene39038.t1 |
| chr7.3 | exon | 19235045 | 19235159 | 19235045 | ID=MS.gene39038.t1.exon13;Parent=MS.gene39038.t1 |
| chr7.3 | CDS | 19235045 | 19235159 | 19235045 | ID=cds.MS.gene39038.t1;Parent=MS.gene39038.t1 |
| chr7.3 | exon | 19235668 | 19235735 | 19235668 | ID=MS.gene39038.t1.exon14;Parent=MS.gene39038.t1 |
| chr7.3 | CDS | 19235668 | 19235735 | 19235668 | ID=cds.MS.gene39038.t1;Parent=MS.gene39038.t1 |
| chr7.3 | exon | 19236497 | 19236610 | 19236497 | ID=MS.gene39038.t1.exon15;Parent=MS.gene39038.t1 |
| chr7.3 | CDS | 19236497 | 19236610 | 19236497 | ID=cds.MS.gene39038.t1;Parent=MS.gene39038.t1 |
| chr7.3 | exon | 19237169 | 19237285 | 19237169 | ID=MS.gene39038.t1.exon16;Parent=MS.gene39038.t1 |
| chr7.3 | CDS | 19237169 | 19237285 | 19237169 | ID=cds.MS.gene39038.t1;Parent=MS.gene39038.t1 |
| chr7.3 | exon | 19237405 | 19237458 | 19237405 | ID=MS.gene39038.t1.exon17;Parent=MS.gene39038.t1 |
| chr7.3 | CDS | 19237405 | 19237458 | 19237405 | ID=cds.MS.gene39038.t1;Parent=MS.gene39038.t1 |
| chr7.3 | exon | 19237544 | 19237649 | 19237544 | ID=MS.gene39038.t1.exon18;Parent=MS.gene39038.t1 |
| chr7.3 | CDS | 19237544 | 19237649 | 19237544 | ID=cds.MS.gene39038.t1;Parent=MS.gene39038.t1 |
| chr7.3 | exon | 19237851 | 19237981 | 19237851 | ID=MS.gene39038.t1.exon19;Parent=MS.gene39038.t1 |
| chr7.3 | CDS | 19237851 | 19237981 | 19237851 | ID=cds.MS.gene39038.t1;Parent=MS.gene39038.t1 |
| chr7.3 | exon | 19238303 | 19238371 | 19238303 | ID=MS.gene39038.t1.exon20;Parent=MS.gene39038.t1 |
| chr7.3 | CDS | 19238303 | 19238371 | 19238303 | ID=cds.MS.gene39038.t1;Parent=MS.gene39038.t1 |
| Gene Sequence |
| Protein sequence |
