Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39130.t1 | KEH23600.1 | 79.8 | 332 | 60 | 2 | 1 | 332 | 1 | 325 | 5.80E-150 | 540.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39130.t1 | Q4V3D9 | 55.1 | 372 | 122 | 2 | 6 | 332 | 3 | 374 | 2.6e-114 | 413.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39130.t1 | A0A072UCL7 | 79.8 | 332 | 60 | 2 | 1 | 332 | 1 | 325 | 4.2e-150 | 540.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050670 | MS.gene39130 | 0.810182 | 1.31E-50 | -1.69E-46 |
MS.gene051525 | MS.gene39130 | 0.818802 | 1.62E-52 | -1.69E-46 |
MS.gene051588 | MS.gene39130 | 0.807819 | 4.20E-50 | -1.69E-46 |
MS.gene052253 | MS.gene39130 | 0.801577 | 8.43E-49 | -1.69E-46 |
MS.gene053169 | MS.gene39130 | 0.815418 | 9.34E-52 | -1.69E-46 |
MS.gene055116 | MS.gene39130 | 0.804824 | 1.79E-49 | -1.69E-46 |
MS.gene055909 | MS.gene39130 | 0.818844 | 1.59E-52 | -1.69E-46 |
MS.gene055911 | MS.gene39130 | 0.817588 | 3.05E-52 | -1.69E-46 |
MS.gene056511 | MS.gene39130 | 0.801249 | 9.85E-49 | -1.69E-46 |
MS.gene057476 | MS.gene39130 | 0.811523 | 6.71E-51 | -1.69E-46 |
MS.gene057888 | MS.gene39130 | 0.802911 | 4.48E-49 | -1.69E-46 |
MS.gene058007 | MS.gene39130 | 0.837529 | 4.92E-57 | -1.69E-46 |
MS.gene058700 | MS.gene39130 | 0.830087 | 3.58E-55 | -1.69E-46 |
MS.gene058995 | MS.gene39130 | 0.805092 | 1.58E-49 | -1.69E-46 |
MS.gene059082 | MS.gene39130 | 0.816105 | 6.56E-52 | -1.69E-46 |
MS.gene059420 | MS.gene39130 | 0.810348 | 1.21E-50 | -1.69E-46 |
MS.gene059462 | MS.gene39130 | 0.819445 | 1.16E-52 | -1.69E-46 |
MS.gene059807 | MS.gene39130 | 0.813981 | 1.94E-51 | -1.69E-46 |
MS.gene059868 | MS.gene39130 | 0.802659 | 5.05E-49 | -1.69E-46 |
MS.gene059876 | MS.gene39130 | 0.806586 | 7.66E-50 | -1.69E-46 |
MS.gene060372 | MS.gene39130 | 0.807609 | 4.65E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene39130 | MS.gene059296 | PPI |
MS.gene39130 | MS.gene61630 | PPI |
MS.gene39130 | MS.gene66625 | PPI |
MS.gene39130 | MS.gene35719 | PPI |
MS.gene39130 | MS.gene061292 | PPI |
MS.gene39130 | MS.gene034366 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39130.t1 | MTR_7g490330 | 79.819 | 332 | 60 | 2 | 1 | 332 | 1 | 325 | 0.0 | 539 |
MS.gene39130.t1 | MTR_7g490350 | 71.351 | 370 | 67 | 2 | 1 | 332 | 1 | 369 | 0.0 | 526 |
MS.gene39130.t1 | MTR_7g090300 | 71.622 | 370 | 66 | 2 | 1 | 332 | 1 | 369 | 0.0 | 524 |
MS.gene39130.t1 | MTR_5g091980 | 78.313 | 332 | 63 | 2 | 1 | 332 | 1 | 323 | 0.0 | 519 |
MS.gene39130.t1 | MTR_2g087780 | 50.000 | 352 | 125 | 5 | 29 | 332 | 47 | 395 | 1.01e-109 | 325 |
MS.gene39130.t1 | MTR_4g050190 | 48.817 | 338 | 124 | 5 | 41 | 332 | 57 | 391 | 1.06e-103 | 310 |
MS.gene39130.t1 | MTR_7g090310 | 41.600 | 375 | 164 | 6 | 12 | 331 | 11 | 385 | 1.55e-98 | 296 |
MS.gene39130.t1 | MTR_7g090320 | 46.224 | 331 | 127 | 5 | 52 | 331 | 56 | 386 | 2.75e-98 | 296 |
MS.gene39130.t1 | MTR_2g099030 | 48.148 | 324 | 120 | 3 | 51 | 327 | 79 | 401 | 5.21e-98 | 296 |
MS.gene39130.t1 | MTR_4g112670 | 42.525 | 301 | 152 | 3 | 50 | 330 | 35 | 334 | 2.71e-78 | 243 |
MS.gene39130.t1 | MTR_4g112630 | 39.706 | 340 | 178 | 6 | 3 | 331 | 2 | 325 | 1.27e-74 | 233 |
MS.gene39130.t1 | MTR_4g112650 | 39.535 | 344 | 172 | 6 | 3 | 326 | 2 | 329 | 8.45e-74 | 231 |
MS.gene39130.t1 | MTR_2g058450 | 42.475 | 299 | 152 | 4 | 53 | 332 | 39 | 336 | 7.02e-71 | 224 |
MS.gene39130.t1 | MTR_4g112620 | 37.716 | 289 | 139 | 3 | 54 | 331 | 42 | 300 | 1.90e-56 | 186 |
MS.gene39130.t1 | MTR_2g058410 | 39.130 | 230 | 125 | 2 | 115 | 329 | 1 | 230 | 8.94e-45 | 153 |
MS.gene39130.t1 | MTR_0003s0530 | 39.560 | 182 | 94 | 1 | 159 | 324 | 2 | 183 | 9.92e-39 | 136 |
MS.gene39130.t1 | MTR_8g074270 | 37.555 | 229 | 122 | 5 | 54 | 282 | 78 | 285 | 4.52e-38 | 139 |
MS.gene39130.t1 | MTR_8g074210 | 35.776 | 232 | 128 | 4 | 51 | 282 | 75 | 285 | 2.08e-37 | 137 |
MS.gene39130.t1 | MTR_8g074170 | 37.662 | 231 | 119 | 8 | 54 | 282 | 78 | 285 | 1.27e-36 | 135 |
MS.gene39130.t1 | MTR_2g042370 | 28.889 | 315 | 165 | 8 | 55 | 332 | 65 | 357 | 2.11e-27 | 110 |
MS.gene39130.t1 | MTR_2g042420 | 26.757 | 370 | 210 | 9 | 1 | 332 | 3 | 349 | 9.98e-27 | 108 |
MS.gene39130.t1 | MTR_1g075865 | 41.509 | 106 | 61 | 1 | 163 | 268 | 7 | 111 | 2.69e-24 | 96.7 |
MS.gene39130.t1 | MTR_2g042430 | 27.653 | 311 | 165 | 8 | 55 | 328 | 77 | 364 | 4.54e-24 | 101 |
MS.gene39130.t1 | MTR_4g112840 | 47.778 | 90 | 47 | 0 | 192 | 281 | 63 | 152 | 9.02e-23 | 93.6 |
MS.gene39130.t1 | MTR_8g074320 | 40.152 | 132 | 74 | 3 | 109 | 237 | 92 | 221 | 2.03e-19 | 85.9 |
MS.gene39130.t1 | MTR_2g058430 | 42.268 | 97 | 54 | 1 | 106 | 200 | 52 | 148 | 1.84e-16 | 78.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39130.t1 | AT3G57030 | 55.376 | 372 | 121 | 3 | 6 | 332 | 3 | 374 | 1.72e-144 | 413 |
MS.gene39130.t1 | AT1G08470 | 49.408 | 338 | 121 | 5 | 41 | 332 | 56 | 389 | 3.14e-105 | 313 |
MS.gene39130.t1 | AT5G22020 | 48.094 | 341 | 129 | 4 | 37 | 332 | 58 | 395 | 1.37e-104 | 312 |
MS.gene39130.t1 | AT5G22020 | 48.094 | 341 | 129 | 4 | 37 | 332 | 58 | 395 | 1.37e-104 | 312 |
MS.gene39130.t1 | AT5G22020 | 48.094 | 341 | 129 | 4 | 37 | 332 | 58 | 395 | 1.37e-104 | 312 |
MS.gene39130.t1 | AT2G41290 | 46.726 | 336 | 130 | 6 | 45 | 332 | 42 | 376 | 2.17e-93 | 283 |
MS.gene39130.t1 | AT3G57020 | 43.417 | 357 | 156 | 6 | 14 | 329 | 15 | 366 | 1.62e-91 | 278 |
MS.gene39130.t1 | AT3G57010 | 42.818 | 369 | 164 | 6 | 3 | 329 | 4 | 367 | 4.12e-91 | 277 |
MS.gene39130.t1 | AT3G59530 | 44.817 | 328 | 122 | 5 | 49 | 329 | 79 | 394 | 3.66e-88 | 270 |
MS.gene39130.t1 | AT3G59530 | 44.817 | 328 | 122 | 5 | 49 | 329 | 79 | 394 | 3.66e-88 | 270 |
MS.gene39130.t1 | AT3G59530 | 44.817 | 328 | 122 | 5 | 49 | 329 | 79 | 394 | 3.66e-88 | 270 |
MS.gene39130.t1 | AT2G41300 | 46.129 | 310 | 124 | 3 | 60 | 329 | 84 | 390 | 9.03e-87 | 266 |
MS.gene39130.t1 | AT3G57020 | 42.017 | 357 | 147 | 6 | 14 | 329 | 15 | 352 | 6.26e-85 | 260 |
MS.gene39130.t1 | AT1G74020 | 42.662 | 293 | 151 | 6 | 54 | 332 | 38 | 327 | 1.36e-69 | 220 |
MS.gene39130.t1 | AT1G74010 | 42.568 | 296 | 152 | 7 | 51 | 332 | 34 | 325 | 7.98e-68 | 216 |
MS.gene39130.t1 | AT1G74000 | 40.476 | 294 | 158 | 7 | 53 | 332 | 39 | 329 | 2.70e-64 | 207 |
MS.gene39130.t1 | AT3G51440 | 33.603 | 247 | 144 | 6 | 41 | 286 | 56 | 283 | 2.28e-31 | 121 |
MS.gene39130.t1 | AT3G51430 | 32.271 | 251 | 150 | 6 | 37 | 286 | 52 | 283 | 1.26e-29 | 117 |
MS.gene39130.t1 | AT3G51430 | 31.325 | 249 | 151 | 6 | 37 | 284 | 52 | 281 | 4.16e-29 | 115 |
MS.gene39130.t1 | AT3G51450 | 32.618 | 233 | 137 | 6 | 55 | 286 | 70 | 283 | 4.61e-29 | 115 |
MS.gene39130.t1 | AT3G51420 | 31.405 | 242 | 146 | 6 | 41 | 281 | 56 | 278 | 2.41e-28 | 113 |
Find 86 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACTTCACTGATGTTCTTCA+TGG | 0.198711 | 7.4:+18498581 | None:intergenic |
GAAATTCAAATGGGCAGTTT+TGG | 0.232638 | 7.4:-18498683 | MS.gene39130:CDS |
TATATTGGTGTTTATAGTTT+AGG | 0.238782 | 7.4:-18498513 | MS.gene39130:CDS |
CTCAATGTAGTGGGACCTAC+TGG | 0.241265 | 7.4:-18499676 | MS.gene39130:CDS |
AATATTCTTGTACTTCTTAG+TGG | 0.314755 | 7.4:-18498933 | MS.gene39130:CDS |
AGGGAAAATATTAGAAATCT+TGG | 0.328667 | 7.4:-18498622 | MS.gene39130:CDS |
TTGCTTAAAGCAACACCATT+AGG | 0.331103 | 7.4:+18498834 | None:intergenic |
GTATTGACTTTGCCAGCTTT+TGG | 0.331769 | 7.4:+18498744 | None:intergenic |
GTGGGAGGCCACTAGGACTA+AGG | 0.337333 | 7.4:-18499747 | MS.gene39130:CDS |
ACTGCAGAATTCTTCGGCTT+TGG | 0.342556 | 7.4:-18498776 | MS.gene39130:CDS |
TATTAGAAATCTTGGGAGAT+TGG | 0.345041 | 7.4:-18498614 | MS.gene39130:CDS |
AAACTATAAACACCAATATA+AGG | 0.351153 | 7.4:+18498516 | None:intergenic |
TTGCTGTCACGAGTTCTAAT+AGG | 0.352873 | 7.4:-18500739 | MS.gene39130:intron |
CTTCTTAGTGGAGACGCAAC+TGG | 0.367623 | 7.4:-18498921 | MS.gene39130:CDS |
ACTCTCCGGTCCGACGGCTT+TGG | 0.383656 | 7.4:+18500856 | None:intergenic |
AAGAGAGAAATGGAAAACTT+TGG | 0.411409 | 7.4:-18498557 | MS.gene39130:CDS |
ATTCTTCGGCTTTGGCTTCG+TGG | 0.418524 | 7.4:-18498768 | MS.gene39130:CDS |
TCAATGTAGTGGGACCTACT+GGG | 0.421424 | 7.4:-18499675 | MS.gene39130:CDS |
CTTTCACTTCACCAATGACT+TGG | 0.432489 | 7.4:-18499611 | MS.gene39130:CDS |
CTTATATTGTCGGGAAAACC+TGG | 0.434775 | 7.4:+18498708 | None:intergenic |
TGAATTTCTCCTTATATTGT+CGG | 0.438415 | 7.4:+18498698 | None:intergenic |
CCTCGAACTGCAGAATTCTT+CGG | 0.438961 | 7.4:-18498782 | MS.gene39130:CDS |
CCAGAGTTGGAGCATATTTG+TGG | 0.445690 | 7.4:-18499766 | MS.gene39130:CDS |
GAATTTCTCCTTATATTGTC+GGG | 0.456126 | 7.4:+18498699 | None:intergenic |
GGTGTTGCTTTAAGCAAAGA+TGG | 0.456261 | 7.4:-18498828 | MS.gene39130:CDS |
TTCACTGATATCCAAGTCAT+TGG | 0.463204 | 7.4:+18499600 | None:intergenic |
TGGCTTCGTGGACCAAAAGC+TGG | 0.463403 | 7.4:-18498756 | MS.gene39130:CDS |
AGTGAAGTGGAAGAGAGAAA+TGG | 0.469053 | 7.4:-18498567 | MS.gene39130:CDS |
GGGAAAATATTAGAAATCTT+GGG | 0.469300 | 7.4:-18498621 | MS.gene39130:CDS |
TATATTGCTGATGCTTACCT+TGG | 0.473507 | 7.4:-18499700 | MS.gene39130:CDS |
CATATTTGTGGGAGGCCACT+AGG | 0.476270 | 7.4:-18499754 | MS.gene39130:CDS |
GCATGAGAAGAGTGCTAGAA+AGG | 0.478094 | 7.4:+18500973 | None:intergenic |
AATATAAGGAGAAATTCAAA+TGG | 0.478511 | 7.4:-18498693 | MS.gene39130:CDS |
CCACAAATATGCTCCAACTC+TGG | 0.480733 | 7.4:+18499766 | None:intergenic |
CCGAAGAATTCTGCAGTTCG+AGG | 0.480808 | 7.4:+18498782 | None:intergenic |
TTTGATCCAGCAATGTGAAC+AGG | 0.486477 | 7.4:+18500914 | None:intergenic |
CCATCCGCCACGCCGGTGTA+CGG | 0.487653 | 7.4:+18500806 | None:intergenic |
GCTATAAAGCTGAGTGGTGA+AGG | 0.488363 | 7.4:-18498642 | MS.gene39130:CDS |
CAAGTCATTGGTGAAGTGAA+AGG | 0.495058 | 7.4:+18499612 | None:intergenic |
CCGTACACCGGCGTGGCGGA+TGG | 0.496328 | 7.4:-18500806 | MS.gene39130:CDS |
TCAGTGGAAATGCCTTATAT+TGG | 0.502261 | 7.4:-18498528 | MS.gene39130:CDS |
AAAACTTTGGATTGCATCAG+TGG | 0.505405 | 7.4:-18498544 | MS.gene39130:CDS |
AGCTTCTATTGCTAGTTGAG+TGG | 0.511069 | 7.4:+18499645 | None:intergenic |
CAATGTAGTGGGACCTACTG+GGG | 0.524671 | 7.4:-18499674 | MS.gene39130:CDS |
GAAGTGAAGGTCTTGTTAAG+AGG | 0.528733 | 7.4:-18498867 | MS.gene39130:CDS |
TGCTCCAACTCTGGTGCGAA+CGG | 0.529097 | 7.4:+18499775 | None:intergenic |
AAGTCATTGGTGAAGTGAAA+GGG | 0.530724 | 7.4:+18499613 | None:intergenic |
GCATCCGTTCGCACCAGAGT+TGG | 0.531758 | 7.4:-18499779 | MS.gene39130:CDS |
CAGAGTTGGAGCATATTTGT+GGG | 0.532278 | 7.4:-18499765 | MS.gene39130:CDS |
TACTACATAGAGGATGTCCT+TGG | 0.536488 | 7.4:+18500997 | None:intergenic |
TGTTCACATTGCTGGATCAA+AGG | 0.537126 | 7.4:-18500912 | MS.gene39130:CDS |
TACCTTGGCCTCAATGTAGT+GGG | 0.537777 | 7.4:-18499685 | MS.gene39130:CDS |
GTCCGACGGCTTTGGTGACG+TGG | 0.539978 | 7.4:+18500864 | None:intergenic |
TTATCAAACCTTAGTCCTAG+TGG | 0.561618 | 7.4:+18499739 | None:intergenic |
CAATGTGAACAGGTGAAAAG+AGG | 0.562529 | 7.4:+18500924 | None:intergenic |
CGTCACCAAAGCCGTCGGAC+CGG | 0.562729 | 7.4:-18500861 | MS.gene39130:CDS |
GTCCCACTACATTGAGGCCA+AGG | 0.562852 | 7.4:+18499683 | None:intergenic |
CATGGTGAGGGTCCGTACAC+CGG | 0.564118 | 7.4:-18500818 | MS.gene39130:CDS |
CATGAAGAACATCAGTGAAG+TGG | 0.569248 | 7.4:-18498580 | MS.gene39130:CDS |
GAAATCTTGGGAGATTGGCA+AGG | 0.571629 | 7.4:-18498609 | MS.gene39130:CDS |
TAAGTCAACAAAAGAAGTGA+AGG | 0.571883 | 7.4:-18498880 | MS.gene39130:CDS |
TTATCGAAAACAAGACTCTC+CGG | 0.573402 | 7.4:+18500842 | None:intergenic |
AAGTGGGAGGAGAAGGAACG+TGG | 0.575697 | 7.4:-18500773 | MS.gene39130:CDS |
ATATAAGGAGAAATTCAAAT+GGG | 0.580818 | 7.4:-18498692 | MS.gene39130:CDS |
TTCTTAGTGGAGACGCAACT+GGG | 0.583966 | 7.4:-18498920 | MS.gene39130:CDS |
ACACCGGCGTGGCGGATGGT+CGG | 0.585681 | 7.4:-18500802 | MS.gene39130:CDS |
CAAGCACAGTCTATCAGAGA+AGG | 0.594605 | 7.4:-18499549 | MS.gene39130:intron |
GGGAGGAGAAGGAACGTGGT+TGG | 0.595477 | 7.4:-18500769 | MS.gene39130:CDS |
TTACCTTGGCCTCAATGTAG+TGG | 0.599466 | 7.4:-18499686 | MS.gene39130:CDS |
AATGTAGTGGGACCTACTGG+GGG | 0.601063 | 7.4:-18499673 | MS.gene39130:CDS |
AAATCTTGGGAGATTGGCAA+GGG | 0.602246 | 7.4:-18498608 | MS.gene39130:CDS |
AATCCGACCATCCGCCACGC+CGG | 0.605536 | 7.4:+18500799 | None:intergenic |
CTAGAAAGGTTACTACATAG+AGG | 0.615943 | 7.4:+18500987 | None:intergenic |
CAACTAGCAATAGAAGCTGA+AGG | 0.619883 | 7.4:-18499640 | MS.gene39130:CDS |
AACAAGACTCTCCGGTCCGA+CGG | 0.620082 | 7.4:+18500850 | None:intergenic |
CAGTAGGTCCCACTACATTG+AGG | 0.626504 | 7.4:+18499677 | None:intergenic |
CTATAAAGCTGAGTGGTGAA+GGG | 0.627218 | 7.4:-18498641 | MS.gene39130:CDS |
CGTGGAGTATCTGAGCAGCA+TGG | 0.630959 | 7.4:+18500882 | None:intergenic |
TATCATAAACATGAACTCCA+AGG | 0.639632 | 7.4:-18501014 | None:intergenic |
CTCCACGTCACCAAAGCCGT+CGG | 0.656986 | 7.4:-18500866 | MS.gene39130:CDS |
AGTTGGAGCATATTTGTGGG+AGG | 0.657804 | 7.4:-18499762 | MS.gene39130:CDS |
TTGGATATCAGTGAAGATGA+AGG | 0.668380 | 7.4:-18499592 | MS.gene39130:CDS |
GGGTCCGTACACCGGCGTGG+CGG | 0.673340 | 7.4:-18500810 | MS.gene39130:CDS |
TGAGGGTCCGTACACCGGCG+TGG | 0.683753 | 7.4:-18500813 | MS.gene39130:CDS |
GGAGTATCTGAGCAGCATGG+AGG | 0.725901 | 7.4:+18500885 | None:intergenic |
TCAGCAGCTATAAAGCTGAG+TGG | 0.731970 | 7.4:-18498648 | MS.gene39130:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTCAACATATATATTTTTAA+GGG | - | chr7.4:18500123-18500142 | MS.gene39130:intron | 10.0% |
!!! | TTTCTTTATTACTATTTTTT+TGG | - | chr7.4:18498834-18498853 | MS.gene39130:CDS | 10.0% |
!! | ATAGGTATAGATATATTTAA+GGG | + | chr7.4:18499159-18499178 | None:intergenic | 15.0% |
!! | TGATAAATAATCTCAATTAA+TGG | - | chr7.4:18499570-18499589 | MS.gene39130:CDS | 15.0% |
!! | TTAAATTAGTCAATCTAAAT+GGG | - | chr7.4:18499339-18499358 | MS.gene39130:intron | 15.0% |
!! | TTATGAAAACGATTTATATA+TGG | + | chr7.4:18499212-18499231 | None:intergenic | 15.0% |
!!! | CTTCAACATATATATTTTTA+AGG | - | chr7.4:18500122-18500141 | MS.gene39130:intron | 15.0% |
!! | AAACTATAAACACCAATATA+AGG | + | chr7.4:18500997-18501016 | None:intergenic | 20.0% |
!! | AAATATAAGTATGAGTTAGA+TGG | + | chr7.4:18499654-18499673 | None:intergenic | 20.0% |
!! | AATAGAGTTAATTGTAGAAA+AGG | + | chr7.4:18500011-18500030 | None:intergenic | 20.0% |
!! | AATATAAGGAGAAATTCAAA+TGG | - | chr7.4:18500817-18500836 | MS.gene39130:CDS | 20.0% |
!! | ATATAAGGAGAAATTCAAAT+GGG | - | chr7.4:18500818-18500837 | MS.gene39130:CDS | 20.0% |
!! | CATAGGTATAGATATATTTA+AGG | + | chr7.4:18499160-18499179 | None:intergenic | 20.0% |
!! | CTAAAAATTTGTATTTCACA+AGG | + | chr7.4:18500271-18500290 | None:intergenic | 20.0% |
!! | CTTAAATTAGTCAATCTAAA+TGG | - | chr7.4:18499338-18499357 | MS.gene39130:intron | 20.0% |
!! | GTACTACTAACAATATATAT+TGG | - | chr7.4:18500205-18500224 | MS.gene39130:intron | 20.0% |
!! | GTAGAAGTAAAAACTAAAAA+CGG | - | chr7.4:18499037-18499056 | MS.gene39130:intron | 20.0% |
!! | TACAAAATCCTTCTAATTTA+AGG | + | chr7.4:18500297-18500316 | None:intergenic | 20.0% |
!!! | ATATTTTTAAGGGTATGATT+GGG | - | chr7.4:18500133-18500152 | MS.gene39130:intron | 20.0% |
!!! | GATTAGTTGTATGATTTTAA+AGG | - | chr7.4:18499697-18499716 | MS.gene39130:CDS | 20.0% |
!!! | TATATTGGTGTTTATAGTTT+AGG | - | chr7.4:18500997-18501016 | MS.gene39130:CDS | 20.0% |
!!! | TATATTTTTAAGGGTATGAT+TGG | - | chr7.4:18500132-18500151 | MS.gene39130:intron | 20.0% |
!!! | TCTTTTTATATGGCATATTA+TGG | + | chr7.4:18500509-18500528 | None:intergenic | 20.0% |
!!! | TGCTTTTAAGTTATTTTCAT+AGG | + | chr7.4:18499177-18499196 | None:intergenic | 20.0% |
!!! | TTTAGTTTCCTTAAATTAGA+AGG | - | chr7.4:18500286-18500305 | MS.gene39130:intron | 20.0% |
! | AATAACTTAAAAGCAGCTTA+TGG | - | chr7.4:18499182-18499201 | MS.gene39130:intron | 25.0% |
! | AATATTCTTGTACTTCTTAG+TGG | - | chr7.4:18500577-18500596 | MS.gene39130:intron | 25.0% |
! | AGGGAAAATATTAGAAATCT+TGG | - | chr7.4:18500888-18500907 | MS.gene39130:CDS | 25.0% |
! | CATATAAAAAGAATGAGTGA+TGG | - | chr7.4:18500517-18500536 | MS.gene39130:intron | 25.0% |
! | CTAAGGTTTGATAAGAAAAA+TGG | - | chr7.4:18499780-18499799 | MS.gene39130:CDS | 25.0% |
! | CTTAAAACAGATAGAAAGTT+AGG | + | chr7.4:18499476-18499495 | None:intergenic | 25.0% |
! | GAAGAAGTAAATGAAAAGAA+TGG | + | chr7.4:18500353-18500372 | None:intergenic | 25.0% |
! | GGGAAAATATTAGAAATCTT+GGG | - | chr7.4:18500889-18500908 | MS.gene39130:CDS | 25.0% |
! | TAGGTAATAGTAATACCATT+TGG | - | chr7.4:18498790-18498809 | MS.gene39130:CDS | 25.0% |
! | TGAATTTCTCCTTATATTGT+CGG | + | chr7.4:18500815-18500834 | None:intergenic | 25.0% |
! | TGATGGAATGATTTATATGT+TGG | - | chr7.4:18500534-18500553 | MS.gene39130:intron | 25.0% |
! | TTGGATTTGAAGATTTATCT+CGG | - | chr7.4:18500224-18500243 | MS.gene39130:intron | 25.0% |
! | TTTACGAAATATGCATGAAA+AGG | - | chr7.4:18500078-18500097 | MS.gene39130:intron | 25.0% |
!! | CATCACTCATTCTTTTTATA+TGG | + | chr7.4:18500519-18500538 | None:intergenic | 25.0% |
!! | TAAGTAAGTCTTTTAAGCAT+GGG | - | chr7.4:18499081-18499100 | MS.gene39130:intron | 25.0% |
!!! | GTTTTAAGACATTGATAAAC+TGG | - | chr7.4:18499488-18499507 | MS.gene39130:intron | 25.0% |
AAACTAAAAACGGTATGACT+TGG | - | chr7.4:18499047-18499066 | MS.gene39130:intron | 30.0% | |
AAGAGAGAAATGGAAAACTT+TGG | - | chr7.4:18500953-18500972 | MS.gene39130:CDS | 30.0% | |
AGAGTTAATTGTAGAAAAGG+AGG | + | chr7.4:18500008-18500027 | None:intergenic | 30.0% | |
CATGCATATTTGATATGTTG+GGG | - | chr7.4:18498945-18498964 | MS.gene39130:intron | 30.0% | |
GAATTTCTCCTTATATTGTC+GGG | + | chr7.4:18500814-18500833 | None:intergenic | 30.0% | |
GCATGCATATTTGATATGTT+GGG | - | chr7.4:18498944-18498963 | MS.gene39130:intron | 30.0% | |
TAAGTCAACAAAAGAAGTGA+AGG | - | chr7.4:18500630-18500649 | MS.gene39130:intron | 30.0% | |
TATTAGAAATCTTGGGAGAT+TGG | - | chr7.4:18500896-18500915 | MS.gene39130:CDS | 30.0% | |
TGCATGCATATTTGATATGT+TGG | - | chr7.4:18498943-18498962 | MS.gene39130:intron | 30.0% | |
! | AAATTCAAATGGGCAGTTTT+GGG | - | chr7.4:18500828-18500847 | MS.gene39130:CDS | 30.0% |
! | AAGTAAGTCTTTTAAGCATG+GGG | - | chr7.4:18499082-18499101 | MS.gene39130:intron | 30.0% |
! | ATCGTTTTCATAAGCTATTG+TGG | - | chr7.4:18499219-18499238 | MS.gene39130:intron | 30.0% |
! | CTAAGTAAGTCTTTTAAGCA+TGG | - | chr7.4:18499080-18499099 | MS.gene39130:intron | 30.0% |
!!! | AGTCTTGTTTTCGATAAACA+TGG | - | chr7.4:18498674-18498693 | MS.gene39130:CDS | 30.0% |
!!! | TTAATGGCTATTTTTTTCCG+AGG | - | chr7.4:18499586-18499605 | MS.gene39130:CDS | 30.0% |
AAAACTTTGGATTGCATCAG+TGG | - | chr7.4:18500966-18500985 | MS.gene39130:CDS | 35.0% | |
AAATGGGCCCTTATTCTAAA+AGG | - | chr7.4:18499355-18499374 | MS.gene39130:intron | 35.0% | |
AAGCATGGGGTCTTAAAAAT+CGG | - | chr7.4:18499095-18499114 | MS.gene39130:intron | 35.0% | |
AAGTCATTGGTGAAGTGAAA+GGG | + | chr7.4:18499900-18499919 | None:intergenic | 35.0% | |
CAACACTAAATACGAAGAAG+TGG | + | chr7.4:18498997-18499016 | None:intergenic | 35.0% | |
CTAGAAAGGTTACTACATAG+AGG | + | chr7.4:18498526-18498545 | None:intergenic | 35.0% | |
TAATTGTAGAAAAGGAGGCA+AGG | + | chr7.4:18500003-18500022 | None:intergenic | 35.0% | |
TAGAGTCTGTTCAAGAGTTT+AGG | + | chr7.4:18500407-18500426 | None:intergenic | 35.0% | |
TATATTGCTGATGCTTACCT+TGG | - | chr7.4:18499810-18499829 | MS.gene39130:intron | 35.0% | |
TCAGTGGAAATGCCTTATAT+TGG | - | chr7.4:18500982-18501001 | MS.gene39130:CDS | 35.0% | |
TGAAACGTGAAAACACCAAA+TGG | + | chr7.4:18498808-18498827 | None:intergenic | 35.0% | |
TTATCAAACCTTAGTCCTAG+TGG | + | chr7.4:18499774-18499793 | None:intergenic | 35.0% | |
TTATCGAAAACAAGACTCTC+CGG | + | chr7.4:18498671-18498690 | None:intergenic | 35.0% | |
TTCACTGATATCCAAGTCAT+TGG | + | chr7.4:18499913-18499932 | None:intergenic | 35.0% | |
TTGCTTAAAGCAACACCATT+AGG | + | chr7.4:18500679-18500698 | None:intergenic | 35.0% | |
TTGGATATCAGTGAAGATGA+AGG | - | chr7.4:18499918-18499937 | MS.gene39130:intron | 35.0% | |
! | AACCTTGTTGTACATATCCT+CGG | + | chr7.4:18499606-18499625 | None:intergenic | 35.0% |
! | AATACTTTTGCTGATCTTCC+AGG | - | chr7.4:18500784-18500803 | MS.gene39130:CDS | 35.0% |
! | CTGAAACCGTTTGAAACTAA+AGG | + | chr7.4:18499422-18499441 | None:intergenic | 35.0% |
! | GAAATTCAAATGGGCAGTTT+TGG | - | chr7.4:18500827-18500846 | MS.gene39130:CDS | 35.0% |
! | GTTTTCGATAAACATGGTGA+GGG | - | chr7.4:18498680-18498699 | MS.gene39130:CDS | 35.0% |
! | TCTCTGCCTTTAGTTTCAAA+CGG | - | chr7.4:18499413-18499432 | MS.gene39130:intron | 35.0% |
! | TGTTTTCGATAAACATGGTG+AGG | - | chr7.4:18498679-18498698 | MS.gene39130:CDS | 35.0% |
AAATCTTGGGAGATTGGCAA+GGG | - | chr7.4:18500902-18500921 | MS.gene39130:CDS | 40.0% | |
AAGAAGTGGTCGATGAATTG+AGG | + | chr7.4:18498983-18499002 | None:intergenic | 40.0% | |
AGCTTCTATTGCTAGTTGAG+TGG | + | chr7.4:18499868-18499887 | None:intergenic | 40.0% | |
AGTCTGTTCAAGAGTTTAGG+AGG | + | chr7.4:18500404-18500423 | None:intergenic | 40.0% | |
AGTGAAGTGGAAGAGAGAAA+TGG | - | chr7.4:18500943-18500962 | MS.gene39130:CDS | 40.0% | |
CAACTAGCAATAGAAGCTGA+AGG | - | chr7.4:18499870-18499889 | MS.gene39130:intron | 40.0% | |
CAAGTCATTGGTGAAGTGAA+AGG | + | chr7.4:18499901-18499920 | None:intergenic | 40.0% | |
CAATGTGAACAGGTGAAAAG+AGG | + | chr7.4:18498589-18498608 | None:intergenic | 40.0% | |
CACTTCACTGATGTTCTTCA+TGG | + | chr7.4:18500932-18500951 | None:intergenic | 40.0% | |
CAGAGTTGGAGCATATTTGT+GGG | - | chr7.4:18499745-18499764 | MS.gene39130:CDS | 40.0% | |
CATGAAGAACATCAGTGAAG+TGG | - | chr7.4:18500930-18500949 | MS.gene39130:CDS | 40.0% | |
CATGCAGTTTAACACTTTCG+AGG | + | chr7.4:18498929-18498948 | None:intergenic | 40.0% | |
CTATAAAGCTGAGTGGTGAA+GGG | - | chr7.4:18500869-18500888 | MS.gene39130:CDS | 40.0% | |
CTTATATTGTCGGGAAAACC+TGG | + | chr7.4:18500805-18500824 | None:intergenic | 40.0% | |
CTTTCACTTCACCAATGACT+TGG | - | chr7.4:18499899-18499918 | MS.gene39130:intron | 40.0% | |
GTCTGTTCAAGAGTTTAGGA+GGG | + | chr7.4:18500403-18500422 | None:intergenic | 40.0% | |
TACTACATAGAGGATGTCCT+TGG | + | chr7.4:18498516-18498535 | None:intergenic | 40.0% | |
TCTGTTCAAGAGTTTAGGAG+GGG | + | chr7.4:18500402-18500421 | None:intergenic | 40.0% | |
TGTTCACATTGCTGGATCAA+AGG | - | chr7.4:18498598-18498617 | MS.gene39130:CDS | 40.0% | |
TTCCGAGGATATGTACAACA+AGG | - | chr7.4:18499601-18499620 | MS.gene39130:CDS | 40.0% | |
TTTGATCCAGCAATGTGAAC+AGG | + | chr7.4:18498599-18498618 | None:intergenic | 40.0% | |
TTTGTGAATGCAAGCAAGCA+TGG | - | chr7.4:18499447-18499466 | MS.gene39130:intron | 40.0% | |
! | AAGGGTATGATTGGGAGATA+AGG | - | chr7.4:18500141-18500160 | MS.gene39130:intron | 40.0% |
! | ACAGGTGAAAAGAGGTTTTG+TGG | + | chr7.4:18498581-18498600 | None:intergenic | 40.0% |
! | ATTTTGCCTGCAAACGAAAG+TGG | + | chr7.4:18500560-18500579 | None:intergenic | 40.0% |
! | CAGGTTTTCCCGACAATATA+AGG | - | chr7.4:18500803-18500822 | MS.gene39130:CDS | 40.0% |
! | CCCTTATTCTAAAAGGCAAG+GGG | - | chr7.4:18499362-18499381 | MS.gene39130:intron | 40.0% |
! | CCTTATTCTAAAAGGCAAGG+GGG | - | chr7.4:18499363-18499382 | MS.gene39130:intron | 40.0% |
! | GCCCTTATTCTAAAAGGCAA+GGG | - | chr7.4:18499361-18499380 | MS.gene39130:intron | 40.0% |
! | TTGCTGTCACGAGTTCTAAT+AGG | - | chr7.4:18498771-18498790 | MS.gene39130:CDS | 40.0% |
! | TTTTCACCTGTTCACATTGC+TGG | - | chr7.4:18498590-18498609 | MS.gene39130:CDS | 40.0% |
!! | AACGGTATGACTTGGTTTGT+AGG | - | chr7.4:18499055-18499074 | MS.gene39130:intron | 40.0% |
!! | AGAGGACTTGCTTTTCCTAA+TGG | - | chr7.4:18500661-18500680 | MS.gene39130:intron | 40.0% |
!! | CAGGTGAAAAGAGGTTTTGT+GGG | + | chr7.4:18498580-18498599 | None:intergenic | 40.0% |
!! | GAAGTGAAGGTCTTGTTAAG+AGG | - | chr7.4:18500643-18500662 | MS.gene39130:intron | 40.0% |
!! | GGTGTTGCTTTAAGCAAAGA+TGG | - | chr7.4:18500682-18500701 | MS.gene39130:intron | 40.0% |
!!! | CCCCTTGCCTTTTAGAATAA+GGG | + | chr7.4:18499365-18499384 | None:intergenic | 40.0% |
!!! | GTATTGACTTTGCCAGCTTT+TGG | + | chr7.4:18500769-18500788 | None:intergenic | 40.0% |
ACTGCAGAATTCTTCGGCTT+TGG | - | chr7.4:18500734-18500753 | MS.gene39130:intron | 45.0% | |
AGTTGGAGCATATTTGTGGG+AGG | - | chr7.4:18499748-18499767 | MS.gene39130:CDS | 45.0% | |
CAAGCACAGTCTATCAGAGA+AGG | - | chr7.4:18499961-18499980 | MS.gene39130:intron | 45.0% | |
CCACAAATATGCTCCAACTC+TGG | + | chr7.4:18499747-18499766 | None:intergenic | 45.0% | |
CCAGAGTTGGAGCATATTTG+TGG | - | chr7.4:18499744-18499763 | MS.gene39130:CDS | 45.0% | |
CCTCGAACTGCAGAATTCTT+CGG | - | chr7.4:18500728-18500747 | MS.gene39130:intron | 45.0% | |
GAAATCTTGGGAGATTGGCA+AGG | - | chr7.4:18500901-18500920 | MS.gene39130:CDS | 45.0% | |
GCTATAAAGCTGAGTGGTGA+AGG | - | chr7.4:18500868-18500887 | MS.gene39130:CDS | 45.0% | |
TACCTTGGCCTCAATGTAGT+GGG | - | chr7.4:18499825-18499844 | MS.gene39130:intron | 45.0% | |
TCAGCAGCTATAAAGCTGAG+TGG | - | chr7.4:18500862-18500881 | MS.gene39130:CDS | 45.0% | |
TTACCTTGGCCTCAATGTAG+TGG | - | chr7.4:18499824-18499843 | MS.gene39130:intron | 45.0% | |
TTCTTAGTGGAGACGCAACT+GGG | - | chr7.4:18500590-18500609 | MS.gene39130:intron | 45.0% | |
! | GGCCCTTATTCTAAAAGGCA+AGG | - | chr7.4:18499360-18499379 | MS.gene39130:intron | 45.0% |
! | TCAATGTAGTGGGACCTACT+GGG | - | chr7.4:18499835-18499854 | MS.gene39130:intron | 45.0% |
!! | GAGGTTTTGTGGGTTGAATG+AGG | + | chr7.4:18498570-18498589 | None:intergenic | 45.0% |
!! | GCATGAGAAGAGTGCTAGAA+AGG | + | chr7.4:18498540-18498559 | None:intergenic | 45.0% |
!!! | CCCCCTTGCCTTTTAGAATA+AGG | + | chr7.4:18499366-18499385 | None:intergenic | 45.0% |
!!! | GATTTTGAAGTGGGAGGAGA+AGG | - | chr7.4:18498730-18498749 | MS.gene39130:CDS | 45.0% |
!!! | GGATGGTCGGATTTTGAAGT+GGG | - | chr7.4:18498721-18498740 | MS.gene39130:CDS | 45.0% |
AGTTTAGGAGGGGAGAGAAG+AGG | + | chr7.4:18500392-18500411 | None:intergenic | 50.0% | |
CAGTAGGTCCCACTACATTG+AGG | + | chr7.4:18499836-18499855 | None:intergenic | 50.0% | |
CATATTTGTGGGAGGCCACT+AGG | - | chr7.4:18499756-18499775 | MS.gene39130:CDS | 50.0% | |
CCGAAGAATTCTGCAGTTCG+AGG | + | chr7.4:18500731-18500750 | None:intergenic | 50.0% | |
CTTCTTAGTGGAGACGCAAC+TGG | - | chr7.4:18500589-18500608 | MS.gene39130:intron | 50.0% | |
GGAGGCAAGGTTTAGTGTTG+AGG | + | chr7.4:18499990-18500009 | None:intergenic | 50.0% | |
! | AATGTAGTGGGACCTACTGG+GGG | - | chr7.4:18499837-18499856 | MS.gene39130:intron | 50.0% |
! | ATTCTTCGGCTTTGGCTTCG+TGG | - | chr7.4:18500742-18500761 | MS.gene39130:CDS | 50.0% |
! | CAATGTAGTGGGACCTACTG+GGG | - | chr7.4:18499836-18499855 | MS.gene39130:intron | 50.0% |
! | CTCAATGTAGTGGGACCTAC+TGG | - | chr7.4:18499834-18499853 | MS.gene39130:intron | 50.0% |
! | TGTTGGCCACTTTCGTTTGC+AGG | - | chr7.4:18500551-18500570 | MS.gene39130:intron | 50.0% |
!! | CGGATGGTCGGATTTTGAAG+TGG | - | chr7.4:18498720-18498739 | MS.gene39130:CDS | 50.0% |
!!! | TGGTCGGATTTTGAAGTGGG+AGG | - | chr7.4:18498724-18498743 | MS.gene39130:CDS | 50.0% |
AACAAGACTCTCCGGTCCGA+CGG | + | chr7.4:18498663-18498682 | None:intergenic | 55.0% | |
AAGTGGGAGGAGAAGGAACG+TGG | - | chr7.4:18498737-18498756 | MS.gene39130:CDS | 55.0% | |
GTCCCACTACATTGAGGCCA+AGG | + | chr7.4:18499830-18499849 | None:intergenic | 55.0% | |
TGAGTGGCTAAACCCCCAGT+AGG | + | chr7.4:18499852-18499871 | None:intergenic | 55.0% | |
TGCTCCAACTCTGGTGCGAA+CGG | + | chr7.4:18499738-18499757 | None:intergenic | 55.0% | |
TGGCTTCGTGGACCAAAAGC+TGG | - | chr7.4:18500754-18500773 | MS.gene39130:CDS | 55.0% | |
! | CGTGGAGTATCTGAGCAGCA+TGG | + | chr7.4:18498631-18498650 | None:intergenic | 55.0% |
! | GGAGTATCTGAGCAGCATGG+AGG | + | chr7.4:18498628-18498647 | None:intergenic | 55.0% |
CATGGTGAGGGTCCGTACAC+CGG | - | chr7.4:18498692-18498711 | MS.gene39130:CDS | 60.0% | |
CTCCACGTCACCAAAGCCGT+CGG | - | chr7.4:18498644-18498663 | MS.gene39130:CDS | 60.0% | |
GCATCCGTTCGCACCAGAGT+TGG | - | chr7.4:18499731-18499750 | MS.gene39130:CDS | 60.0% | |
GGGAGGAGAAGGAACGTGGT+TGG | - | chr7.4:18498741-18498760 | MS.gene39130:CDS | 60.0% | |
GTGGGAGGCCACTAGGACTA+AGG | - | chr7.4:18499763-18499782 | MS.gene39130:CDS | 60.0% | |
AATCCGACCATCCGCCACGC+CGG | + | chr7.4:18498714-18498733 | None:intergenic | 65.0% | |
ACTCTCCGGTCCGACGGCTT+TGG | + | chr7.4:18498657-18498676 | None:intergenic | 65.0% | |
CGTCACCAAAGCCGTCGGAC+CGG | - | chr7.4:18498649-18498668 | MS.gene39130:CDS | 65.0% | |
!! | GTCCGACGGCTTTGGTGACG+TGG | + | chr7.4:18498649-18498668 | None:intergenic | 65.0% |
CCATCCGCCACGCCGGTGTA+CGG | + | chr7.4:18498707-18498726 | None:intergenic | 70.0% | |
TGAGGGTCCGTACACCGGCG+TGG | - | chr7.4:18498697-18498716 | MS.gene39130:CDS | 70.0% | |
!! | ACACCGGCGTGGCGGATGGT+CGG | - | chr7.4:18498708-18498727 | MS.gene39130:CDS | 70.0% |
GGGTCCGTACACCGGCGTGG+CGG | - | chr7.4:18498700-18498719 | MS.gene39130:CDS | 75.0% | |
! | CCGTACACCGGCGTGGCGGA+TGG | - | chr7.4:18498704-18498723 | MS.gene39130:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 18498506 | 18501026 | 18498506 | ID=MS.gene39130 |
chr7.4 | mRNA | 18498506 | 18501026 | 18498506 | ID=MS.gene39130.t1;Parent=MS.gene39130 |
chr7.4 | exon | 18500740 | 18501026 | 18500740 | ID=MS.gene39130.t1.exon1;Parent=MS.gene39130.t1 |
chr7.4 | CDS | 18500740 | 18501026 | 18500740 | ID=cds.MS.gene39130.t1;Parent=MS.gene39130.t1 |
chr7.4 | exon | 18499550 | 18499813 | 18499550 | ID=MS.gene39130.t1.exon2;Parent=MS.gene39130.t1 |
chr7.4 | CDS | 18499550 | 18499813 | 18499550 | ID=cds.MS.gene39130.t1;Parent=MS.gene39130.t1 |
chr7.4 | exon | 18498506 | 18498959 | 18498506 | ID=MS.gene39130.t1.exon3;Parent=MS.gene39130.t1 |
chr7.4 | CDS | 18498506 | 18498959 | 18498506 | ID=cds.MS.gene39130.t1;Parent=MS.gene39130.t1 |
Gene Sequence |
Protein sequence |