AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39130.t1 MTR_7g490330 79.819 332 60 2 1 332 1 325 0.0 539
MS.gene39130.t1 MTR_7g490350 71.351 370 67 2 1 332 1 369 0.0 526
MS.gene39130.t1 MTR_7g090300 71.622 370 66 2 1 332 1 369 0.0 524
MS.gene39130.t1 MTR_5g091980 78.313 332 63 2 1 332 1 323 0.0 519
MS.gene39130.t1 MTR_2g087780 50.000 352 125 5 29 332 47 395 1.01e-109 325
MS.gene39130.t1 MTR_4g050190 48.817 338 124 5 41 332 57 391 1.06e-103 310
MS.gene39130.t1 MTR_7g090310 41.600 375 164 6 12 331 11 385 1.55e-98 296
MS.gene39130.t1 MTR_7g090320 46.224 331 127 5 52 331 56 386 2.75e-98 296
MS.gene39130.t1 MTR_2g099030 48.148 324 120 3 51 327 79 401 5.21e-98 296
MS.gene39130.t1 MTR_4g112670 42.525 301 152 3 50 330 35 334 2.71e-78 243
MS.gene39130.t1 MTR_4g112630 39.706 340 178 6 3 331 2 325 1.27e-74 233
MS.gene39130.t1 MTR_4g112650 39.535 344 172 6 3 326 2 329 8.45e-74 231
MS.gene39130.t1 MTR_2g058450 42.475 299 152 4 53 332 39 336 7.02e-71 224
MS.gene39130.t1 MTR_4g112620 37.716 289 139 3 54 331 42 300 1.90e-56 186
MS.gene39130.t1 MTR_2g058410 39.130 230 125 2 115 329 1 230 8.94e-45 153
MS.gene39130.t1 MTR_0003s0530 39.560 182 94 1 159 324 2 183 9.92e-39 136
MS.gene39130.t1 MTR_8g074270 37.555 229 122 5 54 282 78 285 4.52e-38 139
MS.gene39130.t1 MTR_8g074210 35.776 232 128 4 51 282 75 285 2.08e-37 137
MS.gene39130.t1 MTR_8g074170 37.662 231 119 8 54 282 78 285 1.27e-36 135
MS.gene39130.t1 MTR_2g042370 28.889 315 165 8 55 332 65 357 2.11e-27 110
MS.gene39130.t1 MTR_2g042420 26.757 370 210 9 1 332 3 349 9.98e-27 108
MS.gene39130.t1 MTR_1g075865 41.509 106 61 1 163 268 7 111 2.69e-24 96.7
MS.gene39130.t1 MTR_2g042430 27.653 311 165 8 55 328 77 364 4.54e-24 101
MS.gene39130.t1 MTR_4g112840 47.778 90 47 0 192 281 63 152 9.02e-23 93.6
MS.gene39130.t1 MTR_8g074320 40.152 132 74 3 109 237 92 221 2.03e-19 85.9
MS.gene39130.t1 MTR_2g058430 42.268 97 54 1 106 200 52 148 1.84e-16 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39130.t1 AT3G57030 55.376 372 121 3 6 332 3 374 1.72e-144 413
MS.gene39130.t1 AT1G08470 49.408 338 121 5 41 332 56 389 3.14e-105 313
MS.gene39130.t1 AT5G22020 48.094 341 129 4 37 332 58 395 1.37e-104 312
MS.gene39130.t1 AT5G22020 48.094 341 129 4 37 332 58 395 1.37e-104 312
MS.gene39130.t1 AT5G22020 48.094 341 129 4 37 332 58 395 1.37e-104 312
MS.gene39130.t1 AT2G41290 46.726 336 130 6 45 332 42 376 2.17e-93 283
MS.gene39130.t1 AT3G57020 43.417 357 156 6 14 329 15 366 1.62e-91 278
MS.gene39130.t1 AT3G57010 42.818 369 164 6 3 329 4 367 4.12e-91 277
MS.gene39130.t1 AT3G59530 44.817 328 122 5 49 329 79 394 3.66e-88 270
MS.gene39130.t1 AT3G59530 44.817 328 122 5 49 329 79 394 3.66e-88 270
MS.gene39130.t1 AT3G59530 44.817 328 122 5 49 329 79 394 3.66e-88 270
MS.gene39130.t1 AT2G41300 46.129 310 124 3 60 329 84 390 9.03e-87 266
MS.gene39130.t1 AT3G57020 42.017 357 147 6 14 329 15 352 6.26e-85 260
MS.gene39130.t1 AT1G74020 42.662 293 151 6 54 332 38 327 1.36e-69 220
MS.gene39130.t1 AT1G74010 42.568 296 152 7 51 332 34 325 7.98e-68 216
MS.gene39130.t1 AT1G74000 40.476 294 158 7 53 332 39 329 2.70e-64 207
MS.gene39130.t1 AT3G51440 33.603 247 144 6 41 286 56 283 2.28e-31 121
MS.gene39130.t1 AT3G51430 32.271 251 150 6 37 286 52 283 1.26e-29 117
MS.gene39130.t1 AT3G51430 31.325 249 151 6 37 284 52 281 4.16e-29 115
MS.gene39130.t1 AT3G51450 32.618 233 137 6 55 286 70 283 4.61e-29 115
MS.gene39130.t1 AT3G51420 31.405 242 146 6 41 281 56 278 2.41e-28 113

Find 86 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTTCACTGATGTTCTTCA+TGG 0.198711 7.4:+18498581 None:intergenic
GAAATTCAAATGGGCAGTTT+TGG 0.232638 7.4:-18498683 MS.gene39130:CDS
TATATTGGTGTTTATAGTTT+AGG 0.238782 7.4:-18498513 MS.gene39130:CDS
CTCAATGTAGTGGGACCTAC+TGG 0.241265 7.4:-18499676 MS.gene39130:CDS
AATATTCTTGTACTTCTTAG+TGG 0.314755 7.4:-18498933 MS.gene39130:CDS
AGGGAAAATATTAGAAATCT+TGG 0.328667 7.4:-18498622 MS.gene39130:CDS
TTGCTTAAAGCAACACCATT+AGG 0.331103 7.4:+18498834 None:intergenic
GTATTGACTTTGCCAGCTTT+TGG 0.331769 7.4:+18498744 None:intergenic
GTGGGAGGCCACTAGGACTA+AGG 0.337333 7.4:-18499747 MS.gene39130:CDS
ACTGCAGAATTCTTCGGCTT+TGG 0.342556 7.4:-18498776 MS.gene39130:CDS
TATTAGAAATCTTGGGAGAT+TGG 0.345041 7.4:-18498614 MS.gene39130:CDS
AAACTATAAACACCAATATA+AGG 0.351153 7.4:+18498516 None:intergenic
TTGCTGTCACGAGTTCTAAT+AGG 0.352873 7.4:-18500739 MS.gene39130:intron
CTTCTTAGTGGAGACGCAAC+TGG 0.367623 7.4:-18498921 MS.gene39130:CDS
ACTCTCCGGTCCGACGGCTT+TGG 0.383656 7.4:+18500856 None:intergenic
AAGAGAGAAATGGAAAACTT+TGG 0.411409 7.4:-18498557 MS.gene39130:CDS
ATTCTTCGGCTTTGGCTTCG+TGG 0.418524 7.4:-18498768 MS.gene39130:CDS
TCAATGTAGTGGGACCTACT+GGG 0.421424 7.4:-18499675 MS.gene39130:CDS
CTTTCACTTCACCAATGACT+TGG 0.432489 7.4:-18499611 MS.gene39130:CDS
CTTATATTGTCGGGAAAACC+TGG 0.434775 7.4:+18498708 None:intergenic
TGAATTTCTCCTTATATTGT+CGG 0.438415 7.4:+18498698 None:intergenic
CCTCGAACTGCAGAATTCTT+CGG 0.438961 7.4:-18498782 MS.gene39130:CDS
CCAGAGTTGGAGCATATTTG+TGG 0.445690 7.4:-18499766 MS.gene39130:CDS
GAATTTCTCCTTATATTGTC+GGG 0.456126 7.4:+18498699 None:intergenic
GGTGTTGCTTTAAGCAAAGA+TGG 0.456261 7.4:-18498828 MS.gene39130:CDS
TTCACTGATATCCAAGTCAT+TGG 0.463204 7.4:+18499600 None:intergenic
TGGCTTCGTGGACCAAAAGC+TGG 0.463403 7.4:-18498756 MS.gene39130:CDS
AGTGAAGTGGAAGAGAGAAA+TGG 0.469053 7.4:-18498567 MS.gene39130:CDS
GGGAAAATATTAGAAATCTT+GGG 0.469300 7.4:-18498621 MS.gene39130:CDS
TATATTGCTGATGCTTACCT+TGG 0.473507 7.4:-18499700 MS.gene39130:CDS
CATATTTGTGGGAGGCCACT+AGG 0.476270 7.4:-18499754 MS.gene39130:CDS
GCATGAGAAGAGTGCTAGAA+AGG 0.478094 7.4:+18500973 None:intergenic
AATATAAGGAGAAATTCAAA+TGG 0.478511 7.4:-18498693 MS.gene39130:CDS
CCACAAATATGCTCCAACTC+TGG 0.480733 7.4:+18499766 None:intergenic
CCGAAGAATTCTGCAGTTCG+AGG 0.480808 7.4:+18498782 None:intergenic
TTTGATCCAGCAATGTGAAC+AGG 0.486477 7.4:+18500914 None:intergenic
CCATCCGCCACGCCGGTGTA+CGG 0.487653 7.4:+18500806 None:intergenic
GCTATAAAGCTGAGTGGTGA+AGG 0.488363 7.4:-18498642 MS.gene39130:CDS
CAAGTCATTGGTGAAGTGAA+AGG 0.495058 7.4:+18499612 None:intergenic
CCGTACACCGGCGTGGCGGA+TGG 0.496328 7.4:-18500806 MS.gene39130:CDS
TCAGTGGAAATGCCTTATAT+TGG 0.502261 7.4:-18498528 MS.gene39130:CDS
AAAACTTTGGATTGCATCAG+TGG 0.505405 7.4:-18498544 MS.gene39130:CDS
AGCTTCTATTGCTAGTTGAG+TGG 0.511069 7.4:+18499645 None:intergenic
CAATGTAGTGGGACCTACTG+GGG 0.524671 7.4:-18499674 MS.gene39130:CDS
GAAGTGAAGGTCTTGTTAAG+AGG 0.528733 7.4:-18498867 MS.gene39130:CDS
TGCTCCAACTCTGGTGCGAA+CGG 0.529097 7.4:+18499775 None:intergenic
AAGTCATTGGTGAAGTGAAA+GGG 0.530724 7.4:+18499613 None:intergenic
GCATCCGTTCGCACCAGAGT+TGG 0.531758 7.4:-18499779 MS.gene39130:CDS
CAGAGTTGGAGCATATTTGT+GGG 0.532278 7.4:-18499765 MS.gene39130:CDS
TACTACATAGAGGATGTCCT+TGG 0.536488 7.4:+18500997 None:intergenic
TGTTCACATTGCTGGATCAA+AGG 0.537126 7.4:-18500912 MS.gene39130:CDS
TACCTTGGCCTCAATGTAGT+GGG 0.537777 7.4:-18499685 MS.gene39130:CDS
GTCCGACGGCTTTGGTGACG+TGG 0.539978 7.4:+18500864 None:intergenic
TTATCAAACCTTAGTCCTAG+TGG 0.561618 7.4:+18499739 None:intergenic
CAATGTGAACAGGTGAAAAG+AGG 0.562529 7.4:+18500924 None:intergenic
CGTCACCAAAGCCGTCGGAC+CGG 0.562729 7.4:-18500861 MS.gene39130:CDS
GTCCCACTACATTGAGGCCA+AGG 0.562852 7.4:+18499683 None:intergenic
CATGGTGAGGGTCCGTACAC+CGG 0.564118 7.4:-18500818 MS.gene39130:CDS
CATGAAGAACATCAGTGAAG+TGG 0.569248 7.4:-18498580 MS.gene39130:CDS
GAAATCTTGGGAGATTGGCA+AGG 0.571629 7.4:-18498609 MS.gene39130:CDS
TAAGTCAACAAAAGAAGTGA+AGG 0.571883 7.4:-18498880 MS.gene39130:CDS
TTATCGAAAACAAGACTCTC+CGG 0.573402 7.4:+18500842 None:intergenic
AAGTGGGAGGAGAAGGAACG+TGG 0.575697 7.4:-18500773 MS.gene39130:CDS
ATATAAGGAGAAATTCAAAT+GGG 0.580818 7.4:-18498692 MS.gene39130:CDS
TTCTTAGTGGAGACGCAACT+GGG 0.583966 7.4:-18498920 MS.gene39130:CDS
ACACCGGCGTGGCGGATGGT+CGG 0.585681 7.4:-18500802 MS.gene39130:CDS
CAAGCACAGTCTATCAGAGA+AGG 0.594605 7.4:-18499549 MS.gene39130:intron
GGGAGGAGAAGGAACGTGGT+TGG 0.595477 7.4:-18500769 MS.gene39130:CDS
TTACCTTGGCCTCAATGTAG+TGG 0.599466 7.4:-18499686 MS.gene39130:CDS
AATGTAGTGGGACCTACTGG+GGG 0.601063 7.4:-18499673 MS.gene39130:CDS
AAATCTTGGGAGATTGGCAA+GGG 0.602246 7.4:-18498608 MS.gene39130:CDS
AATCCGACCATCCGCCACGC+CGG 0.605536 7.4:+18500799 None:intergenic
CTAGAAAGGTTACTACATAG+AGG 0.615943 7.4:+18500987 None:intergenic
CAACTAGCAATAGAAGCTGA+AGG 0.619883 7.4:-18499640 MS.gene39130:CDS
AACAAGACTCTCCGGTCCGA+CGG 0.620082 7.4:+18500850 None:intergenic
CAGTAGGTCCCACTACATTG+AGG 0.626504 7.4:+18499677 None:intergenic
CTATAAAGCTGAGTGGTGAA+GGG 0.627218 7.4:-18498641 MS.gene39130:CDS
CGTGGAGTATCTGAGCAGCA+TGG 0.630959 7.4:+18500882 None:intergenic
TATCATAAACATGAACTCCA+AGG 0.639632 7.4:-18501014 None:intergenic
CTCCACGTCACCAAAGCCGT+CGG 0.656986 7.4:-18500866 MS.gene39130:CDS
AGTTGGAGCATATTTGTGGG+AGG 0.657804 7.4:-18499762 MS.gene39130:CDS
TTGGATATCAGTGAAGATGA+AGG 0.668380 7.4:-18499592 MS.gene39130:CDS
GGGTCCGTACACCGGCGTGG+CGG 0.673340 7.4:-18500810 MS.gene39130:CDS
TGAGGGTCCGTACACCGGCG+TGG 0.683753 7.4:-18500813 MS.gene39130:CDS
GGAGTATCTGAGCAGCATGG+AGG 0.725901 7.4:+18500885 None:intergenic
TCAGCAGCTATAAAGCTGAG+TGG 0.731970 7.4:-18498648 MS.gene39130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCAACATATATATTTTTAA+GGG - chr7.4:18500123-18500142 MS.gene39130:intron 10.0%
!!! TTTCTTTATTACTATTTTTT+TGG - chr7.4:18498834-18498853 MS.gene39130:CDS 10.0%
!! ATAGGTATAGATATATTTAA+GGG + chr7.4:18499159-18499178 None:intergenic 15.0%
!! TGATAAATAATCTCAATTAA+TGG - chr7.4:18499570-18499589 MS.gene39130:CDS 15.0%
!! TTAAATTAGTCAATCTAAAT+GGG - chr7.4:18499339-18499358 MS.gene39130:intron 15.0%
!! TTATGAAAACGATTTATATA+TGG + chr7.4:18499212-18499231 None:intergenic 15.0%
!!! CTTCAACATATATATTTTTA+AGG - chr7.4:18500122-18500141 MS.gene39130:intron 15.0%
!! AAACTATAAACACCAATATA+AGG + chr7.4:18500997-18501016 None:intergenic 20.0%
!! AAATATAAGTATGAGTTAGA+TGG + chr7.4:18499654-18499673 None:intergenic 20.0%
!! AATAGAGTTAATTGTAGAAA+AGG + chr7.4:18500011-18500030 None:intergenic 20.0%
!! AATATAAGGAGAAATTCAAA+TGG - chr7.4:18500817-18500836 MS.gene39130:CDS 20.0%
!! ATATAAGGAGAAATTCAAAT+GGG - chr7.4:18500818-18500837 MS.gene39130:CDS 20.0%
!! CATAGGTATAGATATATTTA+AGG + chr7.4:18499160-18499179 None:intergenic 20.0%
!! CTAAAAATTTGTATTTCACA+AGG + chr7.4:18500271-18500290 None:intergenic 20.0%
!! CTTAAATTAGTCAATCTAAA+TGG - chr7.4:18499338-18499357 MS.gene39130:intron 20.0%
!! GTACTACTAACAATATATAT+TGG - chr7.4:18500205-18500224 MS.gene39130:intron 20.0%
!! GTAGAAGTAAAAACTAAAAA+CGG - chr7.4:18499037-18499056 MS.gene39130:intron 20.0%
!! TACAAAATCCTTCTAATTTA+AGG + chr7.4:18500297-18500316 None:intergenic 20.0%
!!! ATATTTTTAAGGGTATGATT+GGG - chr7.4:18500133-18500152 MS.gene39130:intron 20.0%
!!! GATTAGTTGTATGATTTTAA+AGG - chr7.4:18499697-18499716 MS.gene39130:CDS 20.0%
!!! TATATTGGTGTTTATAGTTT+AGG - chr7.4:18500997-18501016 MS.gene39130:CDS 20.0%
!!! TATATTTTTAAGGGTATGAT+TGG - chr7.4:18500132-18500151 MS.gene39130:intron 20.0%
!!! TCTTTTTATATGGCATATTA+TGG + chr7.4:18500509-18500528 None:intergenic 20.0%
!!! TGCTTTTAAGTTATTTTCAT+AGG + chr7.4:18499177-18499196 None:intergenic 20.0%
!!! TTTAGTTTCCTTAAATTAGA+AGG - chr7.4:18500286-18500305 MS.gene39130:intron 20.0%
! AATAACTTAAAAGCAGCTTA+TGG - chr7.4:18499182-18499201 MS.gene39130:intron 25.0%
! AATATTCTTGTACTTCTTAG+TGG - chr7.4:18500577-18500596 MS.gene39130:intron 25.0%
! AGGGAAAATATTAGAAATCT+TGG - chr7.4:18500888-18500907 MS.gene39130:CDS 25.0%
! CATATAAAAAGAATGAGTGA+TGG - chr7.4:18500517-18500536 MS.gene39130:intron 25.0%
! CTAAGGTTTGATAAGAAAAA+TGG - chr7.4:18499780-18499799 MS.gene39130:CDS 25.0%
! CTTAAAACAGATAGAAAGTT+AGG + chr7.4:18499476-18499495 None:intergenic 25.0%
! GAAGAAGTAAATGAAAAGAA+TGG + chr7.4:18500353-18500372 None:intergenic 25.0%
! GGGAAAATATTAGAAATCTT+GGG - chr7.4:18500889-18500908 MS.gene39130:CDS 25.0%
! TAGGTAATAGTAATACCATT+TGG - chr7.4:18498790-18498809 MS.gene39130:CDS 25.0%
! TGAATTTCTCCTTATATTGT+CGG + chr7.4:18500815-18500834 None:intergenic 25.0%
! TGATGGAATGATTTATATGT+TGG - chr7.4:18500534-18500553 MS.gene39130:intron 25.0%
! TTGGATTTGAAGATTTATCT+CGG - chr7.4:18500224-18500243 MS.gene39130:intron 25.0%
! TTTACGAAATATGCATGAAA+AGG - chr7.4:18500078-18500097 MS.gene39130:intron 25.0%
!! CATCACTCATTCTTTTTATA+TGG + chr7.4:18500519-18500538 None:intergenic 25.0%
!! TAAGTAAGTCTTTTAAGCAT+GGG - chr7.4:18499081-18499100 MS.gene39130:intron 25.0%
!!! GTTTTAAGACATTGATAAAC+TGG - chr7.4:18499488-18499507 MS.gene39130:intron 25.0%
AAACTAAAAACGGTATGACT+TGG - chr7.4:18499047-18499066 MS.gene39130:intron 30.0%
AAGAGAGAAATGGAAAACTT+TGG - chr7.4:18500953-18500972 MS.gene39130:CDS 30.0%
AGAGTTAATTGTAGAAAAGG+AGG + chr7.4:18500008-18500027 None:intergenic 30.0%
CATGCATATTTGATATGTTG+GGG - chr7.4:18498945-18498964 MS.gene39130:intron 30.0%
GAATTTCTCCTTATATTGTC+GGG + chr7.4:18500814-18500833 None:intergenic 30.0%
GCATGCATATTTGATATGTT+GGG - chr7.4:18498944-18498963 MS.gene39130:intron 30.0%
TAAGTCAACAAAAGAAGTGA+AGG - chr7.4:18500630-18500649 MS.gene39130:intron 30.0%
TATTAGAAATCTTGGGAGAT+TGG - chr7.4:18500896-18500915 MS.gene39130:CDS 30.0%
TGCATGCATATTTGATATGT+TGG - chr7.4:18498943-18498962 MS.gene39130:intron 30.0%
! AAATTCAAATGGGCAGTTTT+GGG - chr7.4:18500828-18500847 MS.gene39130:CDS 30.0%
! AAGTAAGTCTTTTAAGCATG+GGG - chr7.4:18499082-18499101 MS.gene39130:intron 30.0%
! ATCGTTTTCATAAGCTATTG+TGG - chr7.4:18499219-18499238 MS.gene39130:intron 30.0%
! CTAAGTAAGTCTTTTAAGCA+TGG - chr7.4:18499080-18499099 MS.gene39130:intron 30.0%
!!! AGTCTTGTTTTCGATAAACA+TGG - chr7.4:18498674-18498693 MS.gene39130:CDS 30.0%
!!! TTAATGGCTATTTTTTTCCG+AGG - chr7.4:18499586-18499605 MS.gene39130:CDS 30.0%
AAAACTTTGGATTGCATCAG+TGG - chr7.4:18500966-18500985 MS.gene39130:CDS 35.0%
AAATGGGCCCTTATTCTAAA+AGG - chr7.4:18499355-18499374 MS.gene39130:intron 35.0%
AAGCATGGGGTCTTAAAAAT+CGG - chr7.4:18499095-18499114 MS.gene39130:intron 35.0%
AAGTCATTGGTGAAGTGAAA+GGG + chr7.4:18499900-18499919 None:intergenic 35.0%
CAACACTAAATACGAAGAAG+TGG + chr7.4:18498997-18499016 None:intergenic 35.0%
CTAGAAAGGTTACTACATAG+AGG + chr7.4:18498526-18498545 None:intergenic 35.0%
TAATTGTAGAAAAGGAGGCA+AGG + chr7.4:18500003-18500022 None:intergenic 35.0%
TAGAGTCTGTTCAAGAGTTT+AGG + chr7.4:18500407-18500426 None:intergenic 35.0%
TATATTGCTGATGCTTACCT+TGG - chr7.4:18499810-18499829 MS.gene39130:intron 35.0%
TCAGTGGAAATGCCTTATAT+TGG - chr7.4:18500982-18501001 MS.gene39130:CDS 35.0%
TGAAACGTGAAAACACCAAA+TGG + chr7.4:18498808-18498827 None:intergenic 35.0%
TTATCAAACCTTAGTCCTAG+TGG + chr7.4:18499774-18499793 None:intergenic 35.0%
TTATCGAAAACAAGACTCTC+CGG + chr7.4:18498671-18498690 None:intergenic 35.0%
TTCACTGATATCCAAGTCAT+TGG + chr7.4:18499913-18499932 None:intergenic 35.0%
TTGCTTAAAGCAACACCATT+AGG + chr7.4:18500679-18500698 None:intergenic 35.0%
TTGGATATCAGTGAAGATGA+AGG - chr7.4:18499918-18499937 MS.gene39130:intron 35.0%
! AACCTTGTTGTACATATCCT+CGG + chr7.4:18499606-18499625 None:intergenic 35.0%
! AATACTTTTGCTGATCTTCC+AGG - chr7.4:18500784-18500803 MS.gene39130:CDS 35.0%
! CTGAAACCGTTTGAAACTAA+AGG + chr7.4:18499422-18499441 None:intergenic 35.0%
! GAAATTCAAATGGGCAGTTT+TGG - chr7.4:18500827-18500846 MS.gene39130:CDS 35.0%
! GTTTTCGATAAACATGGTGA+GGG - chr7.4:18498680-18498699 MS.gene39130:CDS 35.0%
! TCTCTGCCTTTAGTTTCAAA+CGG - chr7.4:18499413-18499432 MS.gene39130:intron 35.0%
! TGTTTTCGATAAACATGGTG+AGG - chr7.4:18498679-18498698 MS.gene39130:CDS 35.0%
AAATCTTGGGAGATTGGCAA+GGG - chr7.4:18500902-18500921 MS.gene39130:CDS 40.0%
AAGAAGTGGTCGATGAATTG+AGG + chr7.4:18498983-18499002 None:intergenic 40.0%
AGCTTCTATTGCTAGTTGAG+TGG + chr7.4:18499868-18499887 None:intergenic 40.0%
AGTCTGTTCAAGAGTTTAGG+AGG + chr7.4:18500404-18500423 None:intergenic 40.0%
AGTGAAGTGGAAGAGAGAAA+TGG - chr7.4:18500943-18500962 MS.gene39130:CDS 40.0%
CAACTAGCAATAGAAGCTGA+AGG - chr7.4:18499870-18499889 MS.gene39130:intron 40.0%
CAAGTCATTGGTGAAGTGAA+AGG + chr7.4:18499901-18499920 None:intergenic 40.0%
CAATGTGAACAGGTGAAAAG+AGG + chr7.4:18498589-18498608 None:intergenic 40.0%
CACTTCACTGATGTTCTTCA+TGG + chr7.4:18500932-18500951 None:intergenic 40.0%
CAGAGTTGGAGCATATTTGT+GGG - chr7.4:18499745-18499764 MS.gene39130:CDS 40.0%
CATGAAGAACATCAGTGAAG+TGG - chr7.4:18500930-18500949 MS.gene39130:CDS 40.0%
CATGCAGTTTAACACTTTCG+AGG + chr7.4:18498929-18498948 None:intergenic 40.0%
CTATAAAGCTGAGTGGTGAA+GGG - chr7.4:18500869-18500888 MS.gene39130:CDS 40.0%
CTTATATTGTCGGGAAAACC+TGG + chr7.4:18500805-18500824 None:intergenic 40.0%
CTTTCACTTCACCAATGACT+TGG - chr7.4:18499899-18499918 MS.gene39130:intron 40.0%
GTCTGTTCAAGAGTTTAGGA+GGG + chr7.4:18500403-18500422 None:intergenic 40.0%
TACTACATAGAGGATGTCCT+TGG + chr7.4:18498516-18498535 None:intergenic 40.0%
TCTGTTCAAGAGTTTAGGAG+GGG + chr7.4:18500402-18500421 None:intergenic 40.0%
TGTTCACATTGCTGGATCAA+AGG - chr7.4:18498598-18498617 MS.gene39130:CDS 40.0%
TTCCGAGGATATGTACAACA+AGG - chr7.4:18499601-18499620 MS.gene39130:CDS 40.0%
TTTGATCCAGCAATGTGAAC+AGG + chr7.4:18498599-18498618 None:intergenic 40.0%
TTTGTGAATGCAAGCAAGCA+TGG - chr7.4:18499447-18499466 MS.gene39130:intron 40.0%
! AAGGGTATGATTGGGAGATA+AGG - chr7.4:18500141-18500160 MS.gene39130:intron 40.0%
! ACAGGTGAAAAGAGGTTTTG+TGG + chr7.4:18498581-18498600 None:intergenic 40.0%
! ATTTTGCCTGCAAACGAAAG+TGG + chr7.4:18500560-18500579 None:intergenic 40.0%
! CAGGTTTTCCCGACAATATA+AGG - chr7.4:18500803-18500822 MS.gene39130:CDS 40.0%
! CCCTTATTCTAAAAGGCAAG+GGG - chr7.4:18499362-18499381 MS.gene39130:intron 40.0%
! CCTTATTCTAAAAGGCAAGG+GGG - chr7.4:18499363-18499382 MS.gene39130:intron 40.0%
! GCCCTTATTCTAAAAGGCAA+GGG - chr7.4:18499361-18499380 MS.gene39130:intron 40.0%
! TTGCTGTCACGAGTTCTAAT+AGG - chr7.4:18498771-18498790 MS.gene39130:CDS 40.0%
! TTTTCACCTGTTCACATTGC+TGG - chr7.4:18498590-18498609 MS.gene39130:CDS 40.0%
!! AACGGTATGACTTGGTTTGT+AGG - chr7.4:18499055-18499074 MS.gene39130:intron 40.0%
!! AGAGGACTTGCTTTTCCTAA+TGG - chr7.4:18500661-18500680 MS.gene39130:intron 40.0%
!! CAGGTGAAAAGAGGTTTTGT+GGG + chr7.4:18498580-18498599 None:intergenic 40.0%
!! GAAGTGAAGGTCTTGTTAAG+AGG - chr7.4:18500643-18500662 MS.gene39130:intron 40.0%
!! GGTGTTGCTTTAAGCAAAGA+TGG - chr7.4:18500682-18500701 MS.gene39130:intron 40.0%
!!! CCCCTTGCCTTTTAGAATAA+GGG + chr7.4:18499365-18499384 None:intergenic 40.0%
!!! GTATTGACTTTGCCAGCTTT+TGG + chr7.4:18500769-18500788 None:intergenic 40.0%
ACTGCAGAATTCTTCGGCTT+TGG - chr7.4:18500734-18500753 MS.gene39130:intron 45.0%
AGTTGGAGCATATTTGTGGG+AGG - chr7.4:18499748-18499767 MS.gene39130:CDS 45.0%
CAAGCACAGTCTATCAGAGA+AGG - chr7.4:18499961-18499980 MS.gene39130:intron 45.0%
CCACAAATATGCTCCAACTC+TGG + chr7.4:18499747-18499766 None:intergenic 45.0%
CCAGAGTTGGAGCATATTTG+TGG - chr7.4:18499744-18499763 MS.gene39130:CDS 45.0%
CCTCGAACTGCAGAATTCTT+CGG - chr7.4:18500728-18500747 MS.gene39130:intron 45.0%
GAAATCTTGGGAGATTGGCA+AGG - chr7.4:18500901-18500920 MS.gene39130:CDS 45.0%
GCTATAAAGCTGAGTGGTGA+AGG - chr7.4:18500868-18500887 MS.gene39130:CDS 45.0%
TACCTTGGCCTCAATGTAGT+GGG - chr7.4:18499825-18499844 MS.gene39130:intron 45.0%
TCAGCAGCTATAAAGCTGAG+TGG - chr7.4:18500862-18500881 MS.gene39130:CDS 45.0%
TTACCTTGGCCTCAATGTAG+TGG - chr7.4:18499824-18499843 MS.gene39130:intron 45.0%
TTCTTAGTGGAGACGCAACT+GGG - chr7.4:18500590-18500609 MS.gene39130:intron 45.0%
! GGCCCTTATTCTAAAAGGCA+AGG - chr7.4:18499360-18499379 MS.gene39130:intron 45.0%
! TCAATGTAGTGGGACCTACT+GGG - chr7.4:18499835-18499854 MS.gene39130:intron 45.0%
!! GAGGTTTTGTGGGTTGAATG+AGG + chr7.4:18498570-18498589 None:intergenic 45.0%
!! GCATGAGAAGAGTGCTAGAA+AGG + chr7.4:18498540-18498559 None:intergenic 45.0%
!!! CCCCCTTGCCTTTTAGAATA+AGG + chr7.4:18499366-18499385 None:intergenic 45.0%
!!! GATTTTGAAGTGGGAGGAGA+AGG - chr7.4:18498730-18498749 MS.gene39130:CDS 45.0%
!!! GGATGGTCGGATTTTGAAGT+GGG - chr7.4:18498721-18498740 MS.gene39130:CDS 45.0%
AGTTTAGGAGGGGAGAGAAG+AGG + chr7.4:18500392-18500411 None:intergenic 50.0%
CAGTAGGTCCCACTACATTG+AGG + chr7.4:18499836-18499855 None:intergenic 50.0%
CATATTTGTGGGAGGCCACT+AGG - chr7.4:18499756-18499775 MS.gene39130:CDS 50.0%
CCGAAGAATTCTGCAGTTCG+AGG + chr7.4:18500731-18500750 None:intergenic 50.0%
CTTCTTAGTGGAGACGCAAC+TGG - chr7.4:18500589-18500608 MS.gene39130:intron 50.0%
GGAGGCAAGGTTTAGTGTTG+AGG + chr7.4:18499990-18500009 None:intergenic 50.0%
! AATGTAGTGGGACCTACTGG+GGG - chr7.4:18499837-18499856 MS.gene39130:intron 50.0%
! ATTCTTCGGCTTTGGCTTCG+TGG - chr7.4:18500742-18500761 MS.gene39130:CDS 50.0%
! CAATGTAGTGGGACCTACTG+GGG - chr7.4:18499836-18499855 MS.gene39130:intron 50.0%
! CTCAATGTAGTGGGACCTAC+TGG - chr7.4:18499834-18499853 MS.gene39130:intron 50.0%
! TGTTGGCCACTTTCGTTTGC+AGG - chr7.4:18500551-18500570 MS.gene39130:intron 50.0%
!! CGGATGGTCGGATTTTGAAG+TGG - chr7.4:18498720-18498739 MS.gene39130:CDS 50.0%
!!! TGGTCGGATTTTGAAGTGGG+AGG - chr7.4:18498724-18498743 MS.gene39130:CDS 50.0%
AACAAGACTCTCCGGTCCGA+CGG + chr7.4:18498663-18498682 None:intergenic 55.0%
AAGTGGGAGGAGAAGGAACG+TGG - chr7.4:18498737-18498756 MS.gene39130:CDS 55.0%
GTCCCACTACATTGAGGCCA+AGG + chr7.4:18499830-18499849 None:intergenic 55.0%
TGAGTGGCTAAACCCCCAGT+AGG + chr7.4:18499852-18499871 None:intergenic 55.0%
TGCTCCAACTCTGGTGCGAA+CGG + chr7.4:18499738-18499757 None:intergenic 55.0%
TGGCTTCGTGGACCAAAAGC+TGG - chr7.4:18500754-18500773 MS.gene39130:CDS 55.0%
! CGTGGAGTATCTGAGCAGCA+TGG + chr7.4:18498631-18498650 None:intergenic 55.0%
! GGAGTATCTGAGCAGCATGG+AGG + chr7.4:18498628-18498647 None:intergenic 55.0%
CATGGTGAGGGTCCGTACAC+CGG - chr7.4:18498692-18498711 MS.gene39130:CDS 60.0%
CTCCACGTCACCAAAGCCGT+CGG - chr7.4:18498644-18498663 MS.gene39130:CDS 60.0%
GCATCCGTTCGCACCAGAGT+TGG - chr7.4:18499731-18499750 MS.gene39130:CDS 60.0%
GGGAGGAGAAGGAACGTGGT+TGG - chr7.4:18498741-18498760 MS.gene39130:CDS 60.0%
GTGGGAGGCCACTAGGACTA+AGG - chr7.4:18499763-18499782 MS.gene39130:CDS 60.0%
AATCCGACCATCCGCCACGC+CGG + chr7.4:18498714-18498733 None:intergenic 65.0%
ACTCTCCGGTCCGACGGCTT+TGG + chr7.4:18498657-18498676 None:intergenic 65.0%
CGTCACCAAAGCCGTCGGAC+CGG - chr7.4:18498649-18498668 MS.gene39130:CDS 65.0%
!! GTCCGACGGCTTTGGTGACG+TGG + chr7.4:18498649-18498668 None:intergenic 65.0%
CCATCCGCCACGCCGGTGTA+CGG + chr7.4:18498707-18498726 None:intergenic 70.0%
TGAGGGTCCGTACACCGGCG+TGG - chr7.4:18498697-18498716 MS.gene39130:CDS 70.0%
!! ACACCGGCGTGGCGGATGGT+CGG - chr7.4:18498708-18498727 MS.gene39130:CDS 70.0%
GGGTCCGTACACCGGCGTGG+CGG - chr7.4:18498700-18498719 MS.gene39130:CDS 75.0%
! CCGTACACCGGCGTGGCGGA+TGG - chr7.4:18498704-18498723 MS.gene39130:CDS 75.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 18498506 18501026 18498506 ID=MS.gene39130
chr7.4 mRNA 18498506 18501026 18498506 ID=MS.gene39130.t1;Parent=MS.gene39130
chr7.4 exon 18500740 18501026 18500740 ID=MS.gene39130.t1.exon1;Parent=MS.gene39130.t1
chr7.4 CDS 18500740 18501026 18500740 ID=cds.MS.gene39130.t1;Parent=MS.gene39130.t1
chr7.4 exon 18499550 18499813 18499550 ID=MS.gene39130.t1.exon2;Parent=MS.gene39130.t1
chr7.4 CDS 18499550 18499813 18499550 ID=cds.MS.gene39130.t1;Parent=MS.gene39130.t1
chr7.4 exon 18498506 18498959 18498506 ID=MS.gene39130.t1.exon3;Parent=MS.gene39130.t1
chr7.4 CDS 18498506 18498959 18498506 ID=cds.MS.gene39130.t1;Parent=MS.gene39130.t1
Gene Sequence

>MS.gene39130

ATGAACTCCAAGGACATCCTCTATGTAGTAACCTTTCTAGCACTCTTCTCATGCATCTTCGCCTCATTCAACCCACAAAACCTCTTTTCACCTGTTCACATTGCTGGATCAAAGGACAGCCTCCATGCTGCTCAGATACTCCACGTCACCAAAGCCGTCGGACCGGAGAGTCTTGTTTTCGATAAACATGGTGAGGGTCCGTACACCGGCGTGGCGGATGGTCGGATTTTGAAGTGGGAGGAGAAGGAACGTGGTTGGACTGAATTTGCTGTCACGAGTTCTAATAGGTAATAGTAATACCATTTGGTGTTTTCACGTTTCAAAATTATTTCTTTATTACTATTTTTTTGGTAGCACAATTTATTGTTGTTTACTTTTAATTTAGCTTATTAGCGAGACTTAAATTAAGCTTATAGTTGTCCTCGAAAGTGTTAAACTGCATGCATATTTGATATGTTGGGGTGAATGTTTAAACCTCAATTCATCGACCACTTCTTCGTATTTAGTGTTGTTAGATTTGTTGCTAAACTAGTAGAAGTAAAAACTAAAAACGGTATGACTTGGTTTGTAGGTGCTAAGTAAGTCTTTTAAGCATGGGGTCTTAAAAATCGGTTTTCGATATAGAAAAGTTTTGTTGCGAAATATATTAACCCTTAAATATATCTATACCTATGAAAATAACTTAAAAGCAGCTTATGGCGCTCCATATATAAATCGTTTTCATAAGCTATTGTGGATCGCTTGTGAAAATAACTTAAAAGCAGCTTATGAAGCATGTCATAAGTTGTTTTTCTAAGCTCTCTCATTGCAAGTATTTACGACAAAAGATAAACTTAAATTAGTCAATCTAAATGGGCCCTTATTCTAAAAGGCAAGGGGGATGAGAACAAAAAAGTGAACAATGCAATCTCTGCCTTTAGTTTCAAACGGTTTCAGCATTGTTTGTGAATGCAAGCAAGCATGGAGACCTAACTTTCTATCTGTTTTAAGACATTGATAAACTGGCGAATTTTGCAAGAATGTTTCACTTATTAGTTGTTCTAGCTAATATTATAATCAAATAATGATAAATAATCTCAATTAATGGCTATTTTTTTCCGAGGATATGTACAACAAGGTTATATGCTGATTATTTTATTTGAATGCCATCTAACTCATACTTATATTTGCATTTTCTTATGAATTTAATGAGATTAGTTGTATGATTTTAAAGGTCAGATTGTGTGCATCCGTTCGCACCAGAGTTGGAGCATATTTGTGGGAGGCCACTAGGACTAAGGTTTGATAAGAAAAATGGAGATTTGTATATTGCTGATGCTTACCTTGGCCTCAATGTAGTGGGACCTACTGGGGGTTTAGCCACTCAACTAGCAATAGAAGCTGAAGGACATCCCTTTCACTTCACCAATGACTTGGATATCAGTGAAGATGAAGGTGTTATTTACTTCACTGATTCAAGCACAGTCTATCAGAGAAGGTAACCTCAACACTAAACCTTGCCTCCTTTTCTACAATTAACTCTATTTGCATTTTGTAGAACAACATTGCTATTGATTGCGAACAATTTATGTTTTTACGAAATATGCATGAAAAGGTGCAAATTTGTTATTCGTACACTTCAACATATATATTTTTAAGGGTATGATTGGGAGATAAGGATAAATGAATGCTTATAAATAGTATACTTTTTATTTTTCAAGTACTACTAACAATATATATTGGATTTGAAGATTTATCTCGGTAATTCAAAACTCTTCAAAATCCTTGTGAAATACAAATTTTTAGTTTCCTTAAATTAGAAGGATTTTGTATTTTATCAAGAAAAGTAAATCTCTCAAAGTCGTCCATTCTTTTCATTTACTTCTTCTTTTTTCTAAAGTCATCCTCTTCTCTCCCCTCCTAAACTCTTGAACAGACTCTAAATATATTTAGTATCTCTTTTATAAAGCTAAACATAACATCACACTAAGATAATTTTTGAGAAAGCAATGTAATTAAATCCATAATATGCCATATAAAAAGAATGAGTGATGGAATGATTTATATGTTGGCCACTTTCGTTTGCAGGCAAAATATTCTTGTACTTCTTAGTGGAGACGCAACTGGGAGATTAATGAAATATCATAAGTCAACAAAAGAAGTGAAGGTCTTGTTAAGAGGACTTGCTTTTCCTAATGGTGTTGCTTTAAGCAAAGATGGTTCATTTCTTCTAGTAGCTGAAACCTCGAACTGCAGAATTCTTCGGCTTTGGCTTCGTGGACCAAAAGCTGGCAAAGTCAATACTTTTGCTGATCTTCCAGGTTTTCCCGACAATATAAGGAGAAATTCAAATGGGCAGTTTTGGGTTGCTTTACATTCAGCAGCTATAAAGCTGAGTGGTGAAGGGAAAATATTAGAAATCTTGGGAGATTGGCAAGGGAAGACCATGAAGAACATCAGTGAAGTGGAAGAGAGAAATGGAAAACTTTGGATTGCATCAGTGGAAATGCCTTATATTGGTGTTTATAGTTTAGGATTATAA

Protein sequence

>MS.gene39130.t1

MNSKDILYVVTFLALFSCIFASFNPQNLFSPVHIAGSKDSLHAAQILHVTKAVGPESLVFDKHGEGPYTGVADGRILKWEEKERGWTEFAVTSSNRSDCVHPFAPELEHICGRPLGLRFDKKNGDLYIADAYLGLNVVGPTGGLATQLAIEAEGHPFHFTNDLDISEDEGVIYFTDSSTVYQRRQNILVLLSGDATGRLMKYHKSTKEVKVLLRGLAFPNGVALSKDGSFLLVAETSNCRILRLWLRGPKAGKVNTFADLPGFPDNIRRNSNGQFWVALHSAAIKLSGEGKILEILGDWQGKTMKNISEVEERNGKLWIASVEMPYIGVYSLGL