Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40033.t1 | RHN80241.1 | 94.1 | 237 | 14 | 0 | 32 | 268 | 60 | 296 | 7.10E-61 | 244.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40033.t1 | G7I2Q3 | 94.1 | 237 | 14 | 0 | 32 | 268 | 57 | 293 | 5.1e-61 | 244.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene40033 | -0.817281 | 3.58E-52 | -1.69E-46 |
| MS.gene049217 | MS.gene40033 | -0.82193 | 3.11E-53 | -1.69E-46 |
| MS.gene049285 | MS.gene40033 | -0.820509 | 6.61E-53 | -1.69E-46 |
| MS.gene049320 | MS.gene40033 | -0.824576 | 7.49E-54 | -1.69E-46 |
| MS.gene050163 | MS.gene40033 | -0.840196 | 1.01E-57 | -1.69E-46 |
| MS.gene050165 | MS.gene40033 | -0.833113 | 6.43E-56 | -1.69E-46 |
| MS.gene050333 | MS.gene40033 | -0.827316 | 1.67E-54 | -1.69E-46 |
| MS.gene050353 | MS.gene40033 | 0.800937 | 1.14E-48 | -1.69E-46 |
| MS.gene050363 | MS.gene40033 | 0.816807 | 4.57E-52 | -1.69E-46 |
| MS.gene050381 | MS.gene40033 | 0.837876 | 4.01E-57 | -1.69E-46 |
| MS.gene050504 | MS.gene40033 | -0.836327 | 9.99E-57 | -1.69E-46 |
| MS.gene050518 | MS.gene40033 | -0.807214 | 5.64E-50 | -1.69E-46 |
| MS.gene050612 | MS.gene40033 | -0.823399 | 1.41E-53 | -1.69E-46 |
| MS.gene050986 | MS.gene40033 | -0.801404 | 9.15E-49 | -1.69E-46 |
| MS.gene05100 | MS.gene40033 | -0.827262 | 1.72E-54 | -1.69E-46 |
| MS.gene051127 | MS.gene40033 | 0.807738 | 4.37E-50 | -1.69E-46 |
| MS.gene051564 | MS.gene40033 | -0.806716 | 7.19E-50 | -1.69E-46 |
| MS.gene052164 | MS.gene40033 | -0.800443 | 1.44E-48 | -1.69E-46 |
| MS.gene052670 | MS.gene40033 | -0.803967 | 2.71E-49 | -1.69E-46 |
| MS.gene053420 | MS.gene40033 | 0.833106 | 6.45E-56 | -1.69E-46 |
| MS.gene053561 | MS.gene40033 | 0.829136 | 6.09E-55 | -1.69E-46 |
| MS.gene054616 | MS.gene40033 | 0.804016 | 2.65E-49 | -1.69E-46 |
| MS.gene054642 | MS.gene40033 | -0.820035 | 8.48E-53 | -1.69E-46 |
| MS.gene054954 | MS.gene40033 | -0.806261 | 8.96E-50 | -1.69E-46 |
| MS.gene054959 | MS.gene40033 | 0.805463 | 1.32E-49 | -1.69E-46 |
| MS.gene055154 | MS.gene40033 | 0.819396 | 1.19E-52 | -1.69E-46 |
| MS.gene055362 | MS.gene40033 | -0.821849 | 3.24E-53 | -1.69E-46 |
| MS.gene055502 | MS.gene40033 | -0.815005 | 1.15E-51 | -1.69E-46 |
| MS.gene056550 | MS.gene40033 | 0.807427 | 5.08E-50 | -1.69E-46 |
| MS.gene056657 | MS.gene40033 | -0.814512 | 1.48E-51 | -1.69E-46 |
| MS.gene058419 | MS.gene40033 | -0.813959 | 1.97E-51 | -1.69E-46 |
| MS.gene058773 | MS.gene40033 | -0.824787 | 6.68E-54 | -1.69E-46 |
| MS.gene059022 | MS.gene40033 | -0.841211 | 5.45E-58 | -1.69E-46 |
| MS.gene059677 | MS.gene40033 | -0.825555 | 4.40E-54 | -1.69E-46 |
| MS.gene059718 | MS.gene40033 | -0.810859 | 9.35E-51 | -1.69E-46 |
| MS.gene060337 | MS.gene40033 | 0.817616 | 3.01E-52 | -1.69E-46 |
| MS.gene06077 | MS.gene40033 | -0.814895 | 1.22E-51 | -1.69E-46 |
| MS.gene061150 | MS.gene40033 | -0.819575 | 1.08E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40033.t1 | MTR_1g073260 | 92.405 | 237 | 18 | 0 | 32 | 268 | 41 | 277 | 3.13e-153 | 429 |
| MS.gene40033.t1 | MTR_1g073260 | 92.405 | 237 | 18 | 0 | 32 | 268 | 41 | 277 | 5.06e-153 | 428 |
| MS.gene40033.t1 | MTR_1g073260 | 92.405 | 237 | 18 | 0 | 32 | 268 | 57 | 293 | 7.04e-153 | 429 |
| MS.gene40033.t1 | MTR_1g073260 | 92.262 | 168 | 13 | 0 | 32 | 199 | 41 | 208 | 2.35e-103 | 301 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 64 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGCAAGAGCATGTCTATT+TGG | 0.260332 | 1.4:+59878218 | None:intergenic |
| GTATCTGTAACCGAAGATTT+TGG | 0.273127 | 1.4:-59879629 | MS.gene40033:CDS |
| TACCTGTTATTGAAGACTTT+GGG | 0.278202 | 1.4:-59879502 | MS.gene40033:CDS |
| TTTGGTACTTTGACAATAGA+TGG | 0.307291 | 1.4:+59879683 | None:intergenic |
| TAGGTTCCATCTCAAGAAAA+AGG | 0.324911 | 1.4:-59878008 | MS.gene40033:CDS |
| TTCTGCAGAACCGGAGGAAT+TGG | 0.348481 | 1.4:+59879463 | None:intergenic |
| TACCTGTCACTGAAGACTTT+GGG | 0.350219 | 1.4:-59879376 | MS.gene40033:CDS |
| TGATCATGTAGGAAAGAAAA+AGG | 0.353754 | 1.4:-59878114 | MS.gene40033:intron |
| AGACTTTGGGGACGGCGGTT+TGG | 0.358797 | 1.4:-59879363 | MS.gene40033:CDS |
| ACAGCACGAGGGCGTGGAAT+TGG | 0.374576 | 1.4:+59879242 | None:intergenic |
| ATGGCACAGAGACAACTTTA+TGG | 0.375380 | 1.4:+59879702 | None:intergenic |
| TCTTGCGTCCGGAGGAATAT+CGG | 0.385319 | 1.4:+59878169 | None:intergenic |
| CTTCTCTGGTTCTGCAGAAC+CGG | 0.386674 | 1.4:+59879454 | None:intergenic |
| TCCCCAAAGTCTTCAATAAC+AGG | 0.399542 | 1.4:+59879500 | None:intergenic |
| GTACCTGTTATTGAAGACTT+TGG | 0.416459 | 1.4:-59879503 | MS.gene40033:CDS |
| AGCAGAAACAAGACTGGAAA+TGG | 0.419403 | 1.4:-59878275 | MS.gene40033:CDS |
| GCATCCGATTTGTCAGGACC+TGG | 0.425980 | 1.4:-59879341 | MS.gene40033:CDS |
| ACTGCAGTTGCCAAAATCTT+CGG | 0.440848 | 1.4:+59879619 | None:intergenic |
| TCTATATGGCCGTCCTTCTC+AGG | 0.446794 | 1.4:+59879296 | None:intergenic |
| TCAGTATCTCCATCCTTCTC+TGG | 0.448833 | 1.4:+59879440 | None:intergenic |
| TCAGTATCTCCATCCTTCTC+TGG | 0.448833 | 1.4:+59879566 | None:intergenic |
| TTCTGTAGAACCAGAGGAAT+CGG | 0.461876 | 1.4:+59879589 | None:intergenic |
| ATCAACTTTATCTTTAGACT+TGG | 0.466112 | 1.4:+59878133 | None:intergenic |
| GTACCTGTCACTGAAGACTT+TGG | 0.473223 | 1.4:-59879377 | MS.gene40033:CDS |
| AAAAGGAAATTCTGCATGAC+TGG | 0.487000 | 1.4:+59879798 | None:intergenic |
| TCCCCAAAGTCTTCAGTGAC+AGG | 0.504033 | 1.4:+59879374 | None:intergenic |
| ATCTTTAGACTTGGGCTCTG+TGG | 0.509252 | 1.4:+59878142 | None:intergenic |
| CATCCGATTTGTCAGGACCT+GGG | 0.510606 | 1.4:-59879340 | MS.gene40033:CDS |
| GGTTTGGCATCCGATTTGTC+AGG | 0.511838 | 1.4:-59879347 | MS.gene40033:CDS |
| AGTTTGACATCCGATTCCTC+TGG | 0.514190 | 1.4:-59879599 | MS.gene40033:CDS |
| GATATGACAGCACGAGGGCG+TGG | 0.515028 | 1.4:+59879236 | None:intergenic |
| GGTTTGACATCCAATTCCTC+CGG | 0.524831 | 1.4:-59879473 | MS.gene40033:CDS |
| AGGTACTCGTGGAATCAAAT+CGG | 0.525694 | 1.4:+59879520 | None:intergenic |
| TCAACTTTATCTTTAGACTT+GGG | 0.525773 | 1.4:+59878134 | None:intergenic |
| ATCCGATTTGTCAGGACCTG+GGG | 0.530457 | 1.4:-59879339 | MS.gene40033:CDS |
| CGTGCTGTCATATCTAGTCC+TGG | 0.542686 | 1.4:-59879227 | MS.gene40033:intron |
| AAAGATAAAGTTGATCATGT+AGG | 0.545329 | 1.4:-59878125 | MS.gene40033:CDS |
| CGGTTCTGCAGAACCAGAGA+AGG | 0.550317 | 1.4:-59879453 | MS.gene40033:CDS |
| ACCTGTGGCAAGTAACACTT+TGG | 0.559970 | 1.4:+59879665 | None:intergenic |
| ACCTGTTATTGAAGACTTTG+GGG | 0.566193 | 1.4:-59879501 | MS.gene40033:CDS |
| CTCTGGTTCTGCAGAACCGG+AGG | 0.570758 | 1.4:+59879457 | None:intergenic |
| GTTATTGAAGACTTTGGGGA+AGG | 0.576122 | 1.4:-59879497 | MS.gene40033:CDS |
| AGTGGGAGCAGAAACAAGAC+TGG | 0.578304 | 1.4:-59878281 | MS.gene40033:CDS |
| CTCTGGTTCTGTAGAACCAG+AGG | 0.585302 | 1.4:+59879583 | None:intergenic |
| ACAGAAAATGACTTAATGAG+TGG | 0.585648 | 1.4:-59878299 | MS.gene40033:intron |
| CAGAAAATGACTTAATGAGT+GGG | 0.588202 | 1.4:-59878298 | MS.gene40033:CDS |
| ACCAAAGTGTTACTTGCCAC+AGG | 0.590389 | 1.4:-59879666 | MS.gene40033:CDS |
| TGGTTCTACAGAACCAGAGA+AGG | 0.590844 | 1.4:-59879579 | MS.gene40033:CDS |
| ACCTGTCACTGAAGACTTTG+GGG | 0.594909 | 1.4:-59879375 | MS.gene40033:CDS |
| GAAGGATCATGGACCTGAGA+AGG | 0.596092 | 1.4:-59879309 | MS.gene40033:CDS |
| TCTTCAATAACAGGTACTCG+TGG | 0.602537 | 1.4:+59879509 | None:intergenic |
| TGACACTACCGATATTCCTC+CGG | 0.603823 | 1.4:-59878177 | MS.gene40033:CDS |
| ATTGAAGACTTTGGGGAAGG+CGG | 0.604745 | 1.4:-59879494 | MS.gene40033:CDS |
| TCTGCAGAACCAGAGAAGGA+TGG | 0.614650 | 1.4:-59879449 | MS.gene40033:CDS |
| TCTACAGAACCAGAGAAGGA+TGG | 0.618996 | 1.4:-59879575 | MS.gene40033:CDS |
| TCTTCGGTTACAGATACTCG+TGG | 0.630012 | 1.4:+59879635 | None:intergenic |
| ACTGAAGACTTTGGGGACGG+CGG | 0.636584 | 1.4:-59879368 | MS.gene40033:CDS |
| TCTTCAGTGACAGGTACTCG+TGG | 0.639277 | 1.4:+59879383 | None:intergenic |
| GATCATGGACCTGAGAAGGA+CGG | 0.642589 | 1.4:-59879305 | MS.gene40033:CDS |
| GTCACTGAAGACTTTGGGGA+CGG | 0.652392 | 1.4:-59879371 | MS.gene40033:CDS |
| TCCGATTTGTCAGGACCTGG+GGG | 0.661422 | 1.4:-59879338 | MS.gene40033:CDS |
| GGACTAGATATGACAGCACG+AGG | 0.661674 | 1.4:+59879230 | None:intergenic |
| ACTCGTGGAATTGATACCTG+TGG | 0.695504 | 1.4:+59879650 | None:intergenic |
| GACTAGATATGACAGCACGA+GGG | 0.734110 | 1.4:+59879231 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAGTAATATTATATTGTT+AGG | - | chr1.4:59879079-59879098 | MS.gene40033:intron | 10.0% |
| !! | TAAAATCTGATAATTTACAT+AGG | - | chr1.4:59879725-59879744 | MS.gene40033:CDS | 15.0% |
| !! | AATATTTGTGTATGTTCTAA+AGG | + | chr1.4:59878815-59878834 | None:intergenic | 20.0% |
| !! | ATAAAATTGCAAAAAGTAAC+TGG | + | chr1.4:59878657-59878676 | None:intergenic | 20.0% |
| !!! | ATCATAGATAACAATGTTTT+GGG | - | chr1.4:59878739-59878758 | MS.gene40033:intron | 20.0% |
| !!! | GTACTGAAAAGAATATTTTA+GGG | - | chr1.4:59879014-59879033 | MS.gene40033:intron | 20.0% |
| !!! | TATCATAGATAACAATGTTT+TGG | - | chr1.4:59878738-59878757 | MS.gene40033:intron | 20.0% |
| ! | AAGGTAAACAAAACTCATAA+TGG | - | chr1.4:59878929-59878948 | MS.gene40033:intron | 25.0% |
| ! | AATGAAGTGCATTATAATTC+AGG | + | chr1.4:59879155-59879174 | None:intergenic | 25.0% |
| ! | ATAAAGCATAACTGTTCTTA+TGG | + | chr1.4:59878719-59878738 | None:intergenic | 25.0% |
| ! | ATAGCTAAACAGAAAAATGA+TGG | + | chr1.4:59878613-59878632 | None:intergenic | 25.0% |
| ! | ATCAACTTTATCTTTAGACT+TGG | + | chr1.4:59879671-59879690 | None:intergenic | 25.0% |
| ! | TCAACTTTATCTTTAGACTT+GGG | + | chr1.4:59879670-59879689 | None:intergenic | 25.0% |
| !! | AAAGATAAAGTTGATCATGT+AGG | - | chr1.4:59879676-59879695 | MS.gene40033:CDS | 25.0% |
| !! | AGGTTTATTATGTAGCTTTT+CGG | - | chr1.4:59879455-59879474 | MS.gene40033:CDS | 25.0% |
| !!! | CTTTTTTCTCATCATCTATA+TGG | + | chr1.4:59878522-59878541 | None:intergenic | 25.0% |
| !!! | GGTACTGAAAAGAATATTTT+AGG | - | chr1.4:59879013-59879032 | MS.gene40033:intron | 25.0% |
| ACAGAAAATGACTTAATGAG+TGG | - | chr1.4:59879502-59879521 | MS.gene40033:CDS | 30.0% | |
| ACTAGAATCAGCATAATTGA+TGG | + | chr1.4:59879401-59879420 | None:intergenic | 30.0% | |
| AGAATTCAATTCGTTGTTTG+TGG | - | chr1.4:59879321-59879340 | MS.gene40033:CDS | 30.0% | |
| AGATTAAGATCATGTCACAT+TGG | + | chr1.4:59879768-59879787 | None:intergenic | 30.0% | |
| ATCTCTATAGCAAATAAGCA+AGG | - | chr1.4:59879226-59879245 | MS.gene40033:intron | 30.0% | |
| ATGCATTAAGTGAGAATACA+GGG | - | chr1.4:59879194-59879213 | MS.gene40033:intron | 30.0% | |
| ATGTGACATGATCTTAATCT+AGG | - | chr1.4:59879768-59879787 | MS.gene40033:CDS | 30.0% | |
| ATTGTCTGAGCTATAACTAA+AGG | - | chr1.4:59878675-59878694 | MS.gene40033:intron | 30.0% | |
| CAGAAAATGACTTAATGAGT+GGG | - | chr1.4:59879503-59879522 | MS.gene40033:CDS | 30.0% | |
| TACCTGTTATTGAAGACTTT+GGG | - | chr1.4:59878299-59878318 | MS.gene40033:intron | 30.0% | |
| TATGCATTAAGTGAGAATAC+AGG | - | chr1.4:59879193-59879212 | MS.gene40033:intron | 30.0% | |
| TGATCATGTAGGAAAGAAAA+AGG | - | chr1.4:59879687-59879706 | MS.gene40033:CDS | 30.0% | |
| TTACCAACATCTATATCTCT+TGG | + | chr1.4:59878788-59878807 | None:intergenic | 30.0% | |
| TTTGGTACTTTGACAATAGA+TGG | + | chr1.4:59878121-59878140 | None:intergenic | 30.0% | |
| ! | AAAGTACTTCAAATTTGCTC+TGG | + | chr1.4:59878908-59878927 | None:intergenic | 30.0% |
| ! | ATTGTCTAATTTTGCAGTGA+AGG | - | chr1.4:59878075-59878094 | MS.gene40033:intron | 30.0% |
| ! | GCAAATTTGAAGTACTTTGA+AGG | - | chr1.4:59878910-59878929 | MS.gene40033:intron | 30.0% |
| ! | TCTACTTTCTGTGTTATTCA+AGG | - | chr1.4:59879435-59879454 | MS.gene40033:CDS | 30.0% |
| !! | TAATTTTCACTTCTAGCTGA+TGG | - | chr1.4:59879293-59879312 | MS.gene40033:CDS | 30.0% |
| AAAAGGAAATTCTGCATGAC+TGG | + | chr1.4:59878006-59878025 | None:intergenic | 35.0% | |
| AAGCCAAGAGATATAGATGT+TGG | - | chr1.4:59878782-59878801 | MS.gene40033:intron | 35.0% | |
| ACCTGTTATTGAAGACTTTG+GGG | - | chr1.4:59878300-59878319 | MS.gene40033:intron | 35.0% | |
| AGGTTCCATCTCAAGAAAAA+GGG | - | chr1.4:59879794-59879813 | MS.gene40033:CDS | 35.0% | |
| AGTGACATGAAAAGAAACCT+TGG | - | chr1.4:59878990-59879009 | MS.gene40033:intron | 35.0% | |
| CTATATCTCTTGGCTTCAAT+GGG | + | chr1.4:59878778-59878797 | None:intergenic | 35.0% | |
| CTGATAATTTACATAGGCAC+TGG | - | chr1.4:59879731-59879750 | MS.gene40033:CDS | 35.0% | |
| GGAAAGAAAAAGGTTCACAA+AGG | - | chr1.4:59879697-59879716 | MS.gene40033:CDS | 35.0% | |
| GTACCTGTTATTGAAGACTT+TGG | - | chr1.4:59878298-59878317 | MS.gene40033:CDS | 35.0% | |
| GTGACATGAAAAGAAACCTT+GGG | - | chr1.4:59878991-59879010 | MS.gene40033:intron | 35.0% | |
| TAGGTTCCATCTCAAGAAAA+AGG | - | chr1.4:59879793-59879812 | MS.gene40033:CDS | 35.0% | |
| TCTATATCTCTTGGCTTCAA+TGG | + | chr1.4:59878779-59878798 | None:intergenic | 35.0% | |
| TCTCACTTAATGCATACCAT+AGG | + | chr1.4:59879189-59879208 | None:intergenic | 35.0% | |
| TGACATGAAAAGAAACCTTG+GGG | - | chr1.4:59878992-59879011 | MS.gene40033:intron | 35.0% | |
| ! | AAACTTGAATTTTGAGCCTG+TGG | - | chr1.4:59879038-59879057 | MS.gene40033:intron | 35.0% |
| ! | ACTAAAGGTTGACTTAGAGA+TGG | - | chr1.4:59878690-59878709 | MS.gene40033:intron | 35.0% |
| ! | ATATTCTTTTCAGTACCCCA+AGG | + | chr1.4:59879010-59879029 | None:intergenic | 35.0% |
| ! | CATGATCTTAATCTAGGACT+AGG | - | chr1.4:59879774-59879793 | MS.gene40033:CDS | 35.0% |
| ! | GTATCTGTAACCGAAGATTT+TGG | - | chr1.4:59878172-59878191 | MS.gene40033:CDS | 35.0% |
| ! | TATTGTTAGGAGACTGCTTT+TGG | - | chr1.4:59879092-59879111 | MS.gene40033:intron | 35.0% |
| ! | TCTTTCCCTTTTTCTTGAGA+TGG | + | chr1.4:59879802-59879821 | None:intergenic | 35.0% |
| !! | CATAATGGAAGCACTTCATA+TGG | - | chr1.4:59878944-59878963 | MS.gene40033:intron | 35.0% |
| ACTGCAGTTGCCAAAATCTT+CGG | + | chr1.4:59878185-59878204 | None:intergenic | 40.0% | |
| AGAGTTGCATTGCATCATTC+TGG | + | chr1.4:59878861-59878880 | None:intergenic | 40.0% | |
| AGCAGAAACAAGACTGGAAA+TGG | - | chr1.4:59879526-59879545 | MS.gene40033:CDS | 40.0% | |
| AGGTACTCGTGGAATCAAAT+CGG | + | chr1.4:59878284-59878303 | None:intergenic | 40.0% | |
| ATGGCACAGAGACAACTTTA+TGG | + | chr1.4:59878102-59878121 | None:intergenic | 40.0% | |
| CAGAAAGTAGATGCAAAGTG+AGG | + | chr1.4:59879426-59879445 | None:intergenic | 40.0% | |
| GATGGAGTATGAGATTTACC+AGG | + | chr1.4:59878595-59878614 | None:intergenic | 40.0% | |
| GTTTGTGGTTGTGAAGAGAA+TGG | - | chr1.4:59879336-59879355 | MS.gene40033:CDS | 40.0% | |
| TACCTGTCACTGAAGACTTT+GGG | - | chr1.4:59878425-59878444 | MS.gene40033:intron | 40.0% | |
| TCCCCAAAGTCTTCAATAAC+AGG | + | chr1.4:59878304-59878323 | None:intergenic | 40.0% | |
| TCTTCAATAACAGGTACTCG+TGG | + | chr1.4:59878295-59878314 | None:intergenic | 40.0% | |
| TTAATGCATACCATAGGCTC+TGG | + | chr1.4:59879183-59879202 | None:intergenic | 40.0% | |
| TTCTGTAGAACCAGAGGAAT+CGG | + | chr1.4:59878215-59878234 | None:intergenic | 40.0% | |
| ! | GTTATTGAAGACTTTGGGGA+AGG | - | chr1.4:59878304-59878323 | MS.gene40033:intron | 40.0% |
| ! | TGAGCAAGAGCATGTCTATT+TGG | + | chr1.4:59879586-59879605 | None:intergenic | 40.0% |
| ACCTGTCACTGAAGACTTTG+GGG | - | chr1.4:59878426-59878445 | MS.gene40033:intron | 45.0% | |
| ACCTGTGGCAAGTAACACTT+TGG | + | chr1.4:59878139-59878158 | None:intergenic | 45.0% | |
| ACTCGTGGAATTGATACCTG+TGG | + | chr1.4:59878154-59878173 | None:intergenic | 45.0% | |
| AGTTTGACATCCGATTCCTC+TGG | - | chr1.4:59878202-59878221 | MS.gene40033:CDS | 45.0% | |
| ATCTTTAGACTTGGGCTCTG+TGG | + | chr1.4:59879662-59879681 | None:intergenic | 45.0% | |
| GACTAGATATGACAGCACGA+GGG | + | chr1.4:59878573-59878592 | None:intergenic | 45.0% | |
| GATGTAAATGCCACAACCAC+AGG | + | chr1.4:59879057-59879076 | None:intergenic | 45.0% | |
| GGTTTGACATCCAATTCCTC+CGG | - | chr1.4:59878328-59878347 | MS.gene40033:intron | 45.0% | |
| GTACCTGTCACTGAAGACTT+TGG | - | chr1.4:59878424-59878443 | MS.gene40033:intron | 45.0% | |
| TCAGTATCTCCATCCTTCTC+TGG | + | chr1.4:59878238-59878257 | None:intergenic | 45.0% | |
| TCTACAGAACCAGAGAAGGA+TGG | - | chr1.4:59878226-59878245 | MS.gene40033:CDS | 45.0% | |
| TCTTCGGTTACAGATACTCG+TGG | + | chr1.4:59878169-59878188 | None:intergenic | 45.0% | |
| TGACACTACCGATATTCCTC+CGG | - | chr1.4:59879624-59879643 | MS.gene40033:CDS | 45.0% | |
| ! | ATTGAAGACTTTGGGGAAGG+CGG | - | chr1.4:59878307-59878326 | MS.gene40033:intron | 45.0% |
| ! | GAATTTTGAGCCTGTGGTTG+TGG | - | chr1.4:59879044-59879063 | MS.gene40033:intron | 45.0% |
| ! | TCATTTTGCTCCAGAGCCTA+TGG | - | chr1.4:59879170-59879189 | MS.gene40033:intron | 45.0% |
| ! | TCTGTGGATTTTCTTGCGTC+CGG | + | chr1.4:59879646-59879665 | None:intergenic | 45.0% |
| ! | TGGTTCTACAGAACCAGAGA+AGG | - | chr1.4:59878222-59878241 | MS.gene40033:CDS | 45.0% |
| !! | ACCAAAGTGTTACTTGCCAC+AGG | - | chr1.4:59878135-59878154 | MS.gene40033:CDS | 45.0% |
| !! | AACAAAAATAAAAATAAAAA+AGG | + | chr1.4:59878023-59878042 | None:intergenic | 5.0% |
| AGTGGGAGCAGAAACAAGAC+TGG | - | chr1.4:59879520-59879539 | MS.gene40033:CDS | 50.0% | |
| CGTGCTGTCATATCTAGTCC+TGG | - | chr1.4:59878574-59878593 | MS.gene40033:intron | 50.0% | |
| GAAGGATCATGGACCTGAGA+AGG | - | chr1.4:59878492-59878511 | MS.gene40033:intron | 50.0% | |
| GATCATGGACCTGAGAAGGA+CGG | - | chr1.4:59878496-59878515 | MS.gene40033:intron | 50.0% | |
| GGACTAGATATGACAGCACG+AGG | + | chr1.4:59878574-59878593 | None:intergenic | 50.0% | |
| TCCCCAAAGTCTTCAGTGAC+AGG | + | chr1.4:59878430-59878449 | None:intergenic | 50.0% | |
| TCTATATGGCCGTCCTTCTC+AGG | + | chr1.4:59878508-59878527 | None:intergenic | 50.0% | |
| TCTGCAGAACCAGAGAAGGA+TGG | - | chr1.4:59878352-59878371 | MS.gene40033:intron | 50.0% | |
| TCTTCAGTGACAGGTACTCG+TGG | + | chr1.4:59878421-59878440 | None:intergenic | 50.0% | |
| TCTTGCGTCCGGAGGAATAT+CGG | + | chr1.4:59879635-59879654 | None:intergenic | 50.0% | |
| TTCTGCAGAACCGGAGGAAT+TGG | + | chr1.4:59878341-59878360 | None:intergenic | 50.0% | |
| ! | ATCCGATTTGTCAGGACCTG+GGG | - | chr1.4:59878462-59878481 | MS.gene40033:intron | 50.0% |
| ! | CATCCGATTTGTCAGGACCT+GGG | - | chr1.4:59878461-59878480 | MS.gene40033:intron | 50.0% |
| ! | GGTTTGGCATCCGATTTGTC+AGG | - | chr1.4:59878454-59878473 | MS.gene40033:intron | 50.0% |
| ! | GTCACTGAAGACTTTGGGGA+CGG | - | chr1.4:59878430-59878449 | MS.gene40033:intron | 50.0% |
| !! | CTCTGGTTCTGTAGAACCAG+AGG | + | chr1.4:59878221-59878240 | None:intergenic | 50.0% |
| !! | CTTCTCTGGTTCTGCAGAAC+CGG | + | chr1.4:59878350-59878369 | None:intergenic | 50.0% |
| CGGTTCTGCAGAACCAGAGA+AGG | - | chr1.4:59878348-59878367 | MS.gene40033:intron | 55.0% | |
| GGGGGACTAGAGAAGGATCA+TGG | - | chr1.4:59878481-59878500 | MS.gene40033:intron | 55.0% | |
| TCCCCCAGGTCCTGACAAAT+CGG | + | chr1.4:59878467-59878486 | None:intergenic | 55.0% | |
| TGATCCTTCTCTAGTCCCCC+AGG | + | chr1.4:59878481-59878500 | None:intergenic | 55.0% | |
| ! | ACTGAAGACTTTGGGGACGG+CGG | - | chr1.4:59878433-59878452 | MS.gene40033:intron | 55.0% |
| ! | GCATCCGATTTGTCAGGACC+TGG | - | chr1.4:59878460-59878479 | MS.gene40033:intron | 55.0% |
| ! | GTGGATTTTCTTGCGTCCGG+AGG | + | chr1.4:59879643-59879662 | None:intergenic | 55.0% |
| ! | TCCGATTTGTCAGGACCTGG+GGG | - | chr1.4:59878463-59878482 | MS.gene40033:intron | 55.0% |
| AGGACCTGGGGGACTAGAGA+AGG | - | chr1.4:59878474-59878493 | MS.gene40033:intron | 60.0% | |
| GATATGACAGCACGAGGGCG+TGG | + | chr1.4:59878568-59878587 | None:intergenic | 60.0% | |
| ! | ACAGCACGAGGGCGTGGAAT+TGG | + | chr1.4:59878562-59878581 | None:intergenic | 60.0% |
| ! | AGACTTTGGGGACGGCGGTT+TGG | - | chr1.4:59878438-59878457 | MS.gene40033:intron | 60.0% |
| !! | CTCTGGTTCTGCAGAACCGG+AGG | + | chr1.4:59878347-59878366 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 59877998 | 59879825 | 59877998 | ID=MS.gene40033 |
| chr1.4 | mRNA | 59877998 | 59879825 | 59877998 | ID=MS.gene40033.t1;Parent=MS.gene40033 |
| chr1.4 | exon | 59879228 | 59879825 | 59879228 | ID=MS.gene40033.t1.exon1;Parent=MS.gene40033.t1 |
| chr1.4 | CDS | 59879228 | 59879825 | 59879228 | ID=cds.MS.gene40033.t1;Parent=MS.gene40033.t1 |
| chr1.4 | exon | 59878115 | 59878317 | 59878115 | ID=MS.gene40033.t1.exon2;Parent=MS.gene40033.t1 |
| chr1.4 | CDS | 59878115 | 59878317 | 59878115 | ID=cds.MS.gene40033.t1;Parent=MS.gene40033.t1 |
| chr1.4 | exon | 59877998 | 59878027 | 59877998 | ID=MS.gene40033.t1.exon3;Parent=MS.gene40033.t1 |
| chr1.4 | CDS | 59877998 | 59878027 | 59877998 | ID=cds.MS.gene40033.t1;Parent=MS.gene40033.t1 |
| Gene Sequence |
| Protein sequence |
