AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052670.t1 MTR_8g105200 97.320 485 10 2 1 485 1 482 0.0 958
MS.gene052670.t1 MTR_5g010630 92.233 103 5 2 200 302 5 104 1.77e-60 193
MS.gene052670.t1 MTR_2g067520 88.406 69 8 0 200 268 5 73 2.03e-37 132
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052670.t1 AT1G24610 65.895 475 155 4 11 482 4 474 0.0 630
MS.gene052670.t1 AT1G14030 24.558 452 287 18 23 461 29 439 5.75e-14 74.3
MS.gene052670.t1 AT4G20130 22.603 438 269 15 55 468 83 474 1.21e-11 67.0

Find 114 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATTCATCATCCATTAATT+TGG 0.191527 4.1:-1787960 None:intergenic
CAAATATGATGGTGCTCTTT+TGG 0.205619 4.1:+1786682 MS.gene052670:CDS
CTCGATTCCTCAAATGGTTT+AGG 0.230593 4.1:+1785021 MS.gene052670:CDS
ACACTTTCCCACCAAATTAA+TGG 0.235094 4.1:+1787949 MS.gene052670:CDS
CTATAATTACAGACTTCTTT+TGG 0.248268 4.1:-1788036 None:intergenic
CATCCATAGCAAAGTAATAA+AGG 0.272419 4.1:-1786587 None:intergenic
TCGATTCCTCAAATGGTTTA+GGG 0.287954 4.1:+1785022 MS.gene052670:CDS
TCCTGAACAATTCTAGCATT+TGG 0.291593 4.1:-1786352 None:intergenic
TTATTGAAGCAGGGTGCTTC+AGG 0.306570 4.1:+1787983 MS.gene052670:CDS
CCACCAAACGGATGCTTATC+TGG 0.313373 4.1:-1786178 None:intergenic
CTCAAATGGTTTAGGGTTAG+TGG 0.331608 4.1:+1785029 MS.gene052670:CDS
TCTTCCCCAGGAAAGAAAAT+AGG 0.342405 4.1:-1785452 None:intergenic
TGAATTGTGGGCAATGAAAC+TGG 0.345575 4.1:+1785346 MS.gene052670:CDS
GAGATGAAGCATCTACTTCT+TGG 0.347456 4.1:-1786201 None:intergenic
GTGGAAGATACCTTGAGATC+TGG 0.349462 4.1:-1786806 None:intergenic
TCCAAATGCTAGAATTGTTC+AGG 0.369501 4.1:+1786351 MS.gene052670:CDS
CAATTAACCTCCCATGTTCC+CGG 0.370584 4.1:+1785153 MS.gene052670:CDS
GGAGCAGGTGTAGAGAAATT+TGG 0.377711 4.1:-1786737 None:intergenic
GAAGTAGATGCTTCATCTCT+TGG 0.384991 4.1:+1786205 MS.gene052670:CDS
CATGGTAACAAGCAATCAAA+TGG 0.388478 4.1:+1786268 MS.gene052670:CDS
CACCCACATCTTTGTGCTAC+CGG 0.389753 4.1:-1786383 None:intergenic
AGTACTCCTTGCAAGTGATA+TGG 0.393467 4.1:+1787805 MS.gene052670:CDS
CTTCATGAAAGGGCAAAACT+TGG 0.399181 4.1:+1785380 MS.gene052670:CDS
GCTCAAAATCAAGAAGAAAT+CGG 0.402032 4.1:-1786123 None:intergenic
TGGAAGATACCTTGAGATCT+GGG 0.409477 4.1:-1786805 None:intergenic
GCAATTAGGTCAGTACCAAT+TGG 0.411464 4.1:-1785066 None:intergenic
GCACAACTCGATTCCTCAAA+TGG 0.416692 4.1:+1785015 MS.gene052670:CDS
CACTAACCCTAAACCATTTG+AGG 0.419235 4.1:-1785028 None:intergenic
ATCCACACGATCTCATCAAA+TGG 0.420118 4.1:+1784950 MS.gene052670:CDS
GACCCTTTATTACTTTGCTA+TGG 0.431078 4.1:+1786584 MS.gene052670:CDS
CTGGTTAATATGGTTATAGT+TGG 0.431597 4.1:+1784817 None:intergenic
AATAATAGAAGGTCGTTTGT+TGG 0.431982 4.1:+1787772 MS.gene052670:CDS
TTAGATGCTGAGGCTCCTCT+TGG 0.432705 4.1:+1787866 MS.gene052670:CDS
ATCCATAGCAAAGTAATAAA+GGG 0.432856 4.1:-1786586 None:intergenic
TGATTACACATGTCAATTAG+AGG 0.440828 4.1:-1786319 None:intergenic
GATGAAGATGCGCATGTTAG+TGG 0.442848 4.1:-1784895 None:intergenic
AAGTGTACCTGGTGAAGAAT+AGG 0.446363 4.1:-1785497 None:intergenic
TTATAGTTGGTGGTGGTAGT+TGG 0.452028 4.1:+1784830 MS.gene052670:CDS
TTGAGCTCGATACAGTCATA+AGG 0.453734 4.1:-1786662 None:intergenic
TAGGAAGAGTGTAAGTTTGT+GGG 0.460771 4.1:-1785433 None:intergenic
GTTAATATGGTTATAGTTGG+TGG 0.472157 4.1:+1784820 None:intergenic
GATGCTGCGAGCATGGCAGC+TGG 0.474563 4.1:+1786704 MS.gene052670:CDS
TGAGCTCGATACAGTCATAA+GGG 0.476129 4.1:-1786661 None:intergenic
TGATGAATCTTTATTGAAGC+AGG 0.476763 4.1:+1787973 MS.gene052670:CDS
TTCATCATCCATTAATTTGG+TGG 0.478727 4.1:-1787957 None:intergenic
CGTTCACCGTGCTGTGAAGA+TGG 0.479946 4.1:+1784993 MS.gene052670:CDS
TTCATGTAACAGGTGAGCTT+AGG 0.480929 4.1:+1787740 MS.gene052670:intron
ATGTAACAGGTGAGCTTAGG+TGG 0.482998 4.1:+1787743 MS.gene052670:intron
TGTGTTGAGGAAGAGCAATT+AGG 0.483022 4.1:-1785080 None:intergenic
ATAGGAAGAGTGTAAGTTTG+TGG 0.491387 4.1:-1785434 None:intergenic
CAATTAGGTCAGTACCAATT+GGG 0.491707 4.1:-1785065 None:intergenic
TTTGAAGCTTCTTCATGAAA+GGG 0.494538 4.1:+1785370 MS.gene052670:CDS
GTTTGAAGCTTCTTCATGAA+AGG 0.494844 4.1:+1785369 MS.gene052670:CDS
CTCTACACCTGCTCCATGGC+AGG 0.495127 4.1:+1786745 MS.gene052670:CDS
TGGTTTAGGGTTAGTGGCTA+AGG 0.496899 4.1:+1785035 MS.gene052670:CDS
ACACCAGATAAGCATCCGTT+TGG 0.499859 4.1:+1786175 MS.gene052670:CDS
GCTAAGGAAGATATCCCAAT+TGG 0.505887 4.1:+1785051 MS.gene052670:CDS
TGTGGGAGATTACTGATGTA+TGG 0.507516 4.1:-1785416 None:intergenic
GCATTTGGCAGATGAATTGT+GGG 0.511625 4.1:+1785334 MS.gene052670:intron
CCAGATAAGCATCCGTTTGG+TGG 0.512174 4.1:+1786178 MS.gene052670:CDS
TCAAGAGCATTCAAGTTACA+TGG 0.514609 4.1:+1786250 MS.gene052670:CDS
GGTAAAGCTTCTTTCATCAA+AGG 0.514902 4.1:+1788084 MS.gene052670:CDS
GGTGGGCAAGAAATAATAGA+AGG 0.517366 4.1:+1787761 MS.gene052670:CDS
TAGATGCTTCATCTCTTGGA+TGG 0.521095 4.1:+1786209 MS.gene052670:CDS
TCATCATCCATTAATTTGGT+GGG 0.525608 4.1:-1787956 None:intergenic
ATAAGTTCCTGCCATGGAGC+AGG 0.528390 4.1:-1786752 None:intergenic
GAAGCTTTACCTTCCTTGAG+AGG 0.528724 4.1:-1788072 None:intergenic
CTATCTCATCTAAATCTAGC+TGG 0.528818 4.1:+1786776 MS.gene052670:CDS
AATGACACACAGAGCAATCA+AGG 0.529045 4.1:-1787918 None:intergenic
AATATGGTTATAGTTGGTGG+TGG 0.531556 4.1:+1784823 None:intergenic
TCAATTAGAGGGAGCATCAT+GGG 0.532994 4.1:-1786307 None:intergenic
TCCACACGATCTCATCAAAT+GGG 0.536822 4.1:+1784951 MS.gene052670:CDS
TGGTGGTGGTAGTTGGAAAA+CGG 0.543989 4.1:+1784837 MS.gene052670:CDS
GTCAATTAGAGGGAGCATCA+TGG 0.544285 4.1:-1786308 None:intergenic
ATGGTAACAAGCAATCAAAT+GGG 0.547291 4.1:+1786269 MS.gene052670:CDS
TCACAAATCCATAATCAAGA+AGG 0.549483 4.1:-1786628 None:intergenic
TCTACTTCTTGGCCACCAAA+CGG 0.549674 4.1:-1786190 None:intergenic
ATCAAATGGGTAACAAGAGA+AGG 0.550397 4.1:+1784964 MS.gene052670:CDS
TGTGGCTGAGAAAGCAATCA+AGG 0.555448 4.1:+1786556 MS.gene052670:CDS
AGCATTTGGCAGATGAATTG+TGG 0.556575 4.1:+1785333 MS.gene052670:intron
CTATGCTCCTATTCTTCACC+AGG 0.562752 4.1:+1785490 MS.gene052670:CDS
TGGAGAAACCCCAGATCTCA+AGG 0.564415 4.1:+1786796 MS.gene052670:CDS
AAGCCGGTAGCACAAAGATG+TGG 0.568257 4.1:+1786380 MS.gene052670:CDS
GCTTCTTTCATCAAAGGAGA+CGG 0.577964 4.1:+1788090 MS.gene052670:CDS
AAGGAGACGGTCACTACTGA+AGG 0.581558 4.1:+1788103 MS.gene052670:CDS
GATGAATCTTTATTGAAGCA+GGG 0.583312 4.1:+1787974 MS.gene052670:CDS
CACTTGCCATATCACTTGCA+AGG 0.586602 4.1:-1787811 None:intergenic
CATGGGAGGTTAATTGAAGG+AGG 0.592569 4.1:-1785146 None:intergenic
AAATTCTTGATGTCTTCCCC+AGG 0.592666 4.1:-1785464 None:intergenic
TTGATGAGATCGTGTGGATG+AGG 0.593115 4.1:-1784946 None:intergenic
AAAGTCAAGCATGCATTAGT+CGG 0.594145 4.1:+1786148 MS.gene052670:CDS
GCTCTGTGTGTCATTGCACT+AGG 0.596790 4.1:+1787926 MS.gene052670:CDS
GAACATGGGAGGTTAATTGA+AGG 0.597020 4.1:-1785149 None:intergenic
GATTACACATGTCAATTAGA+GGG 0.597579 4.1:-1786318 None:intergenic
ACTTAAGTCTTTAGATGCTG+AGG 0.601367 4.1:+1787856 MS.gene052670:CDS
AAGTGCAGAGGAATGTGTTG+AGG 0.602415 4.1:-1785093 None:intergenic
CTAAAGACTTAAGTGTGTTG+AGG 0.608231 4.1:-1787847 None:intergenic
AAATGGGTAACAAGAGAAGG+TGG 0.609234 4.1:+1784967 MS.gene052670:CDS
AGATGCTTCATCTCTTGGAT+GGG 0.610544 4.1:+1786210 MS.gene052670:CDS
ATTTCTCTACACCTGCTCCA+TGG 0.612721 4.1:+1786741 MS.gene052670:CDS
TAGCACAAAGATGTGGGTGA+AGG 0.614670 4.1:+1786387 MS.gene052670:CDS
AGCCGGTAGCACAAAGATGT+GGG 0.619848 4.1:+1786381 MS.gene052670:CDS
GATAGAATAAGTTCCTGCCA+TGG 0.621183 4.1:-1786758 None:intergenic
ATTGTTCAGGAACAAGAAGC+CGG 0.621234 4.1:+1786364 MS.gene052670:CDS
TGTAACAGGTGAGCTTAGGT+GGG 0.630878 4.1:+1787744 MS.gene052670:intron
TCATCATCGTTGAAGTGCAG+AGG 0.633506 4.1:-1785105 None:intergenic
GGAAGATACCTTGAGATCTG+GGG 0.633639 4.1:-1786804 None:intergenic
GAATTGTGGGCAATGAAACT+GGG 0.634097 4.1:+1785347 MS.gene052670:CDS
TGTATCGAGCTCAAATATGA+TGG 0.639565 4.1:+1786671 MS.gene052670:CDS
AGGTCATTTGCAACACCAAG+AGG 0.646673 4.1:-1787881 None:intergenic
TTACTTACCGGGAACATGGG+AGG 0.654333 4.1:-1785160 None:intergenic
ACCCATTTGATGAGATCGTG+TGG 0.664082 4.1:-1784952 None:intergenic
GTTGTGCCATCTTCACAGCA+CGG 0.680905 4.1:-1784999 None:intergenic
TCAAGGTACGAAATACAGCA+AGG 0.687972 4.1:-1787901 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATTTATTAACCATTCAA+TGG - chr4.1:1787009-1787028 None:intergenic 15.0%
!! TTAAAAATGAAAACTACTAT+TGG + chr4.1:1786861-1786880 MS.gene052670:intron 15.0%
!!! AATGTTTTTATAGCAAATAT+TGG + chr4.1:1787549-1787568 MS.gene052670:intron 15.0%
!!! TTCAAATATACATGATTTTA+AGG - chr4.1:1787174-1787193 None:intergenic 15.0%
!! AAAATTAGTATAATGCTTTG+TGG + chr4.1:1785565-1785584 MS.gene052670:intron 20.0%
!! AAAGTTCATAGTTATTCTAT+GGG - chr4.1:1787523-1787542 None:intergenic 20.0%
!! AACATAATGCGTAAAAATAA+TGG - chr4.1:1787477-1787496 None:intergenic 20.0%
!! AGAAATTCAATATTTACCTT+AGG + chr4.1:1786532-1786551 MS.gene052670:intron 20.0%
!! ATAACTAAATCGTGATAATT+AGG - chr4.1:1785928-1785947 None:intergenic 20.0%
!! TAAATCAAATTATGACCTTA+TGG - chr4.1:1787715-1787734 None:intergenic 20.0%
!! TTTAGATCGTTAAGTATATA+TGG - chr4.1:1787329-1787348 None:intergenic 20.0%
!!! ATTTACTTTTTTCATGTAAC+AGG + chr4.1:1787730-1787749 MS.gene052670:intron 20.0%
!!! GTCATTATACATAATTTTTC+AGG - chr4.1:1787257-1787276 None:intergenic 20.0%
! AAATTGCTCATTTCAAAAGT+GGG - chr4.1:1785959-1785978 None:intergenic 25.0%
! AGATTCATCATCCATTAATT+TGG - chr4.1:1787963-1787982 None:intergenic 25.0%
! ATCCATAGCAAAGTAATAAA+GGG - chr4.1:1786589-1786608 None:intergenic 25.0%
! ATGTATATTTGAATCCAGTT+TGG + chr4.1:1787181-1787200 MS.gene052670:intron 25.0%
! CAGTTTGGATGATTAATATA+TGG + chr4.1:1787196-1787215 MS.gene052670:intron 25.0%
! CATATATTAATCATCCAAAC+TGG - chr4.1:1787198-1787217 None:intergenic 25.0%
! GAAAGTTCATAGTTATTCTA+TGG - chr4.1:1787524-1787543 None:intergenic 25.0%
! GAGAAATGCATATAAGTATA+CGG + chr4.1:1785661-1785680 MS.gene052670:intron 25.0%
! GAGATTAATGACATTCAAAA+TGG - chr4.1:1787084-1787103 None:intergenic 25.0%
! TAAAAACCAGTGGTAAAATT+CGG + chr4.1:1785721-1785740 MS.gene052670:intron 25.0%
!! AATACAGCTATAGAATTTTG+TGG - chr4.1:1786828-1786847 None:intergenic 25.0%
!! ACCAATTGATATGAAAGTTT+TGG - chr4.1:1787675-1787694 None:intergenic 25.0%
!! CCAATTGATATGAAAGTTTT+GGG - chr4.1:1787674-1787693 None:intergenic 25.0%
!! CTATAATTACAGACTTCTTT+TGG - chr4.1:1788039-1788058 None:intergenic 25.0%
!!! AAATTCGGTGTAAATAATGT+TGG + chr4.1:1785736-1785755 MS.gene052670:intron 25.0%
!!! TAATTATTTTGAATGCCTTG+CGG + chr4.1:1786037-1786056 MS.gene052670:intron 25.0%
!!! TGCGTAAAAATAATGGATTA+TGG - chr4.1:1787470-1787489 None:intergenic 25.0%
AATAATAGAAGGTCGTTTGT+TGG + chr4.1:1787772-1787791 MS.gene052670:CDS 30.0%
AATTGCTCATTTCAAAAGTG+GGG - chr4.1:1785958-1785977 None:intergenic 30.0%
ACATTCAAAATGGTCGTTAA+CGG - chr4.1:1787074-1787093 None:intergenic 30.0%
ATATATGTGTTTGTGTGTGT+TGG + chr4.1:1787227-1787246 MS.gene052670:intron 30.0%
ATGGTAACAAGCAATCAAAT+GGG + chr4.1:1786269-1786288 MS.gene052670:CDS 30.0%
ATGTAATGAAAAACCTCTCA+AGG + chr4.1:1788059-1788078 MS.gene052670:CDS 30.0%
ATTAGTATTGTCTCTTTCAC+CGG + chr4.1:1787583-1787602 MS.gene052670:intron 30.0%
CAAATTGCTCATTTCAAAAG+TGG - chr4.1:1785960-1785979 None:intergenic 30.0%
CATCCATAGCAAAGTAATAA+AGG - chr4.1:1786590-1786609 None:intergenic 30.0%
CCCAAAACTTTCATATCAAT+TGG + chr4.1:1787671-1787690 MS.gene052670:intron 30.0%
CTCAGTGTCTATTAATTATG+TGG + chr4.1:1785883-1785902 MS.gene052670:intron 30.0%
GATGAATCTTTATTGAAGCA+GGG + chr4.1:1787974-1787993 MS.gene052670:CDS 30.0%
GATTACACATGTCAATTAGA+GGG - chr4.1:1786321-1786340 None:intergenic 30.0%
GCTCAAAATCAAGAAGAAAT+CGG - chr4.1:1786126-1786145 None:intergenic 30.0%
GTATGTTTGAACACAAATTG+TGG + chr4.1:1787117-1787136 MS.gene052670:intron 30.0%
GTTGAATAAATTGGACAATG+TGG + chr4.1:1785309-1785328 MS.gene052670:intron 30.0%
TCACAAATCCATAATCAAGA+AGG - chr4.1:1786631-1786650 None:intergenic 30.0%
TGAATAAGTTAAGAGGATTC+AGG - chr4.1:1787617-1787636 None:intergenic 30.0%
TGATGAATCTTTATTGAAGC+AGG + chr4.1:1787973-1787992 MS.gene052670:CDS 30.0%
TGATTACACATGTCAATTAG+AGG - chr4.1:1786322-1786341 None:intergenic 30.0%
TTCATAGTTATTCTATGGGA+AGG - chr4.1:1787519-1787538 None:intergenic 30.0%
! GATCTTTTCCTTCTTGATTA+TGG + chr4.1:1786620-1786639 MS.gene052670:CDS 30.0%
! GATTTTTGTGTAAAAACCAG+TGG + chr4.1:1785711-1785730 MS.gene052670:intron 30.0%
! TCAATATTTACCTTAGGTTG+TGG + chr4.1:1786538-1786557 MS.gene052670:intron 30.0%
! TCATCATCCATTAATTTGGT+GGG - chr4.1:1787959-1787978 None:intergenic 30.0%
! TTATCTCCAAGTGTAGTTTT+GGG + chr4.1:1785992-1786011 MS.gene052670:intron 30.0%
! TTCATCATCCATTAATTTGG+TGG - chr4.1:1787960-1787979 None:intergenic 30.0%
! TTTATCTCCAAGTGTAGTTT+TGG + chr4.1:1785991-1786010 MS.gene052670:intron 30.0%
! TTTGAAGCTTCTTCATGAAA+GGG + chr4.1:1785370-1785389 MS.gene052670:CDS 30.0%
!! TTTCTTTCTAGAGTCTTGTT+TGG - chr4.1:1785268-1785287 None:intergenic 30.0%
!!! CACTTTTGAAATGAGCAATT+TGG + chr4.1:1785958-1785977 MS.gene052670:intron 30.0%
AAAGTCAAGCATGCATTAGT+CGG + chr4.1:1786148-1786167 MS.gene052670:CDS 35.0%
AAATTCATGAATCACGAGAC+AGG + chr4.1:1786087-1786106 MS.gene052670:intron 35.0%
AACAGTAAGTAAAGTGTACC+TGG - chr4.1:1785511-1785530 None:intergenic 35.0%
AATGAAAAACCTCTCAAGGA+AGG + chr4.1:1788063-1788082 MS.gene052670:CDS 35.0%
AATTCATGAGCTAATTGAGC+TGG - chr4.1:1785191-1785210 None:intergenic 35.0%
ACACTTGGAGATAAACTATG+CGG - chr4.1:1785986-1786005 None:intergenic 35.0%
ACACTTTCCCACCAAATTAA+TGG + chr4.1:1787949-1787968 MS.gene052670:CDS 35.0%
ACTTAAGTCTTTAGATGCTG+AGG + chr4.1:1787856-1787875 MS.gene052670:CDS 35.0%
AGATAGACAATTGTAGCTTC+TGG - chr4.1:1785865-1785884 None:intergenic 35.0%
ATCAAATGGGTAACAAGAGA+AGG + chr4.1:1784964-1784983 MS.gene052670:CDS 35.0%
ATTGCTCATTTCAAAAGTGG+GGG - chr4.1:1785957-1785976 None:intergenic 35.0%
CAAGGGTTGAATAAGTTAAG+AGG - chr4.1:1787624-1787643 None:intergenic 35.0%
CAATTAGGTCAGTACCAATT+GGG - chr4.1:1785068-1785087 None:intergenic 35.0%
CATGGTAACAAGCAATCAAA+TGG + chr4.1:1786268-1786287 MS.gene052670:CDS 35.0%
CTAAAGACTTAAGTGTGTTG+AGG - chr4.1:1787850-1787869 None:intergenic 35.0%
CTATCTCATCTAAATCTAGC+TGG + chr4.1:1786776-1786795 MS.gene052670:CDS 35.0%
CTCTTAACTTATTCAACCCT+TGG + chr4.1:1787622-1787641 MS.gene052670:intron 35.0%
GACCCTTTATTACTTTGCTA+TGG + chr4.1:1786584-1786603 MS.gene052670:CDS 35.0%
GGTAAAGCTTCTTTCATCAA+AGG + chr4.1:1788084-1788103 MS.gene052670:CDS 35.0%
GGTTAATTACGTCCATTGAA+TGG + chr4.1:1786994-1787013 MS.gene052670:intron 35.0%
GTCGTCGATGTTGAATAAAT+TGG + chr4.1:1785300-1785319 MS.gene052670:intron 35.0%
TCCAAATGCTAGAATTGTTC+AGG + chr4.1:1786351-1786370 MS.gene052670:CDS 35.0%
TCCTGAACAATTCTAGCATT+TGG - chr4.1:1786355-1786374 None:intergenic 35.0%
TCGATTCCTCAAATGGTTTA+GGG + chr4.1:1785022-1785041 MS.gene052670:CDS 35.0%
TCGGTGTAAATAATGTTGGT+AGG + chr4.1:1785740-1785759 MS.gene052670:intron 35.0%
TGTATCGAGCTCAAATATGA+TGG + chr4.1:1786671-1786690 MS.gene052670:CDS 35.0%
TTAGTATTGTCTCTTTCACC+GGG + chr4.1:1787584-1787603 MS.gene052670:intron 35.0%
! AATTTTACTTACCGGGAACA+TGG - chr4.1:1785167-1785186 None:intergenic 35.0%
! ACTCTTCCTATTTTCTTTCC+TGG + chr4.1:1785446-1785465 MS.gene052670:CDS 35.0%
! AGCTGGTAATTTTACTTACC+GGG - chr4.1:1785174-1785193 None:intergenic 35.0%
! ATAGGAAGAGTGTAAGTTTG+TGG - chr4.1:1785437-1785456 None:intergenic 35.0%
! ATTTTACTTACCGGGAACAT+GGG - chr4.1:1785166-1785185 None:intergenic 35.0%
! CAAAACTTGGATCTTTTTGG+TGG + chr4.1:1785393-1785412 MS.gene052670:CDS 35.0%
! CTCTTCCTATTTTCTTTCCT+GGG + chr4.1:1785447-1785466 MS.gene052670:CDS 35.0%
! CTTTTGGATTCTGAACTGAA+TGG - chr4.1:1788023-1788042 None:intergenic 35.0%
! GAGCTGGTAATTTTACTTAC+CGG - chr4.1:1785175-1785194 None:intergenic 35.0%
! GTTTGAAGCTTCTTCATGAA+AGG + chr4.1:1785369-1785388 MS.gene052670:CDS 35.0%
! TAGGAAGAGTGTAAGTTTGT+GGG - chr4.1:1785436-1785455 None:intergenic 35.0%
! TCTTCCTATTTTCTTTCCTG+GGG + chr4.1:1785448-1785467 MS.gene052670:CDS 35.0%
! TGTTTTCCCTCTGTTCATTA+AGG + chr4.1:1787493-1787512 MS.gene052670:intron 35.0%
! TTTACACCGAATTTTACCAC+TGG - chr4.1:1785730-1785749 None:intergenic 35.0%
!! CAAATATGATGGTGCTCTTT+TGG + chr4.1:1786682-1786701 MS.gene052670:CDS 35.0%
!! TATCTCCAAGTGTAGTTTTG+GGG + chr4.1:1785993-1786012 MS.gene052670:intron 35.0%
!! TCAAGAGCATTCAAGTTACA+TGG + chr4.1:1786250-1786269 MS.gene052670:CDS 35.0%
AAATGGGTAACAAGAGAAGG+TGG + chr4.1:1784967-1784986 MS.gene052670:CDS 40.0%
AAATTCTTGATGTCTTCCCC+AGG - chr4.1:1785467-1785486 None:intergenic 40.0%
AAGTGTACCTGGTGAAGAAT+AGG - chr4.1:1785500-1785519 None:intergenic 40.0%
AATGACACACAGAGCAATCA+AGG - chr4.1:1787921-1787940 None:intergenic 40.0%
AGATGCTTCATCTCTTGGAT+GGG + chr4.1:1786210-1786229 MS.gene052670:CDS 40.0%
AGCATTTGGCAGATGAATTG+TGG + chr4.1:1785333-1785352 MS.gene052670:intron 40.0%
AGTACTCCTTGCAAGTGATA+TGG + chr4.1:1787805-1787824 MS.gene052670:CDS 40.0%
ATCCACACGATCTCATCAAA+TGG + chr4.1:1784950-1784969 MS.gene052670:CDS 40.0%
ATGTTAGCACAAGAGCCATA+AGG + chr4.1:1787697-1787716 MS.gene052670:intron 40.0%
ATTGTTCAGGAACAAGAAGC+CGG + chr4.1:1786364-1786383 MS.gene052670:CDS 40.0%
CACTAACCCTAAACCATTTG+AGG - chr4.1:1785031-1785050 None:intergenic 40.0%
CTCGATTCCTCAAATGGTTT+AGG + chr4.1:1785021-1785040 MS.gene052670:CDS 40.0%
CTTCATGAAAGGGCAAAACT+TGG + chr4.1:1785380-1785399 MS.gene052670:CDS 40.0%
GAACATGGGAGGTTAATTGA+AGG - chr4.1:1785152-1785171 None:intergenic 40.0%
GAAGTAGATGCTTCATCTCT+TGG + chr4.1:1786205-1786224 MS.gene052670:CDS 40.0%
GAATTGTGGGCAATGAAACT+GGG + chr4.1:1785347-1785366 MS.gene052670:CDS 40.0%
GATAGAATAAGTTCCTGCCA+TGG - chr4.1:1786761-1786780 None:intergenic 40.0%
GCAATTAGGTCAGTACCAAT+TGG - chr4.1:1785069-1785088 None:intergenic 40.0%
GCATTTGGCAGATGAATTGT+GGG + chr4.1:1785334-1785353 MS.gene052670:intron 40.0%
GCTAAGGAAGATATCCCAAT+TGG + chr4.1:1785051-1785070 MS.gene052670:CDS 40.0%
GCTTACTGTACTTTGCAGAA+AGG + chr4.1:1787408-1787427 MS.gene052670:intron 40.0%
GCTTCTTTCATCAAAGGAGA+CGG + chr4.1:1788090-1788109 MS.gene052670:CDS 40.0%
GGTGGGCAAGAAATAATAGA+AGG + chr4.1:1787761-1787780 MS.gene052670:CDS 40.0%
GTTAGCGCTGTTAAAGTATG+TGG + chr4.1:1786973-1786992 MS.gene052670:intron 40.0%
TAGATGCTTCATCTCTTGGA+TGG + chr4.1:1786209-1786228 MS.gene052670:CDS 40.0%
TAGTATTGTCTCTTTCACCG+GGG + chr4.1:1787585-1787604 MS.gene052670:intron 40.0%
TCAAGGTACGAAATACAGCA+AGG - chr4.1:1787904-1787923 None:intergenic 40.0%
TCCACACGATCTCATCAAAT+GGG + chr4.1:1784951-1784970 MS.gene052670:CDS 40.0%
TCTTCCCCAGGAAAGAAAAT+AGG - chr4.1:1785455-1785474 None:intergenic 40.0%
TGAATTGTGGGCAATGAAAC+TGG + chr4.1:1785346-1785365 MS.gene052670:CDS 40.0%
TGAGCTCGATACAGTCATAA+GGG - chr4.1:1786664-1786683 None:intergenic 40.0%
TGGAAGATACCTTGAGATCT+GGG - chr4.1:1786808-1786827 None:intergenic 40.0%
TGTGGGAGATTACTGATGTA+TGG - chr4.1:1785419-1785438 None:intergenic 40.0%
TGTGTTGAGGAAGAGCAATT+AGG - chr4.1:1785083-1785102 None:intergenic 40.0%
TTCATGTAACAGGTGAGCTT+AGG + chr4.1:1787740-1787759 MS.gene052670:intron 40.0%
TTGAGCTCGATACAGTCATA+AGG - chr4.1:1786665-1786684 None:intergenic 40.0%
TTGGACAATGTGGTAGCATT+TGG + chr4.1:1785319-1785338 MS.gene052670:intron 40.0%
! CTCAAATGGTTTAGGGTTAG+TGG + chr4.1:1785029-1785048 MS.gene052670:CDS 40.0%
! GAGATGAAGCATCTACTTCT+TGG - chr4.1:1786204-1786223 None:intergenic 40.0%
! GGGCAAAACTTGGATCTTTT+TGG + chr4.1:1785390-1785409 MS.gene052670:CDS 40.0%
!! TCAATTAGAGGGAGCATCAT+GGG - chr4.1:1786310-1786329 None:intergenic 40.0%
!! TTATAGTTGGTGGTGGTAGT+TGG + chr4.1:1784830-1784849 MS.gene052670:CDS 40.0%
AAGTGCAGAGGAATGTGTTG+AGG - chr4.1:1785096-1785115 None:intergenic 45.0%
ACAATTGTAGCTTCTGGTGC+TGG - chr4.1:1785859-1785878 None:intergenic 45.0%
ACACCAGATAAGCATCCGTT+TGG + chr4.1:1786175-1786194 MS.gene052670:CDS 45.0%
ACCCATTTGATGAGATCGTG+TGG - chr4.1:1784955-1784974 None:intergenic 45.0%
AGGTCATTTGCAACACCAAG+AGG - chr4.1:1787884-1787903 None:intergenic 45.0%
AGTTGCACATTGCTCTTGTG+AGG - chr4.1:1785786-1785805 None:intergenic 45.0%
ATGTAACAGGTGAGCTTAGG+TGG + chr4.1:1787743-1787762 MS.gene052670:intron 45.0%
ATTTCTCTACACCTGCTCCA+TGG + chr4.1:1786741-1786760 MS.gene052670:CDS 45.0%
CAATTAACCTCCCATGTTCC+CGG + chr4.1:1785153-1785172 MS.gene052670:CDS 45.0%
CACTTGCCATATCACTTGCA+AGG - chr4.1:1787814-1787833 None:intergenic 45.0%
CATGGGAGGTTAATTGAAGG+AGG - chr4.1:1785149-1785168 None:intergenic 45.0%
CTATGCTCCTATTCTTCACC+AGG + chr4.1:1785490-1785509 MS.gene052670:CDS 45.0%
GAAGCTTTACCTTCCTTGAG+AGG - chr4.1:1788075-1788094 None:intergenic 45.0%
GATGAAGATGCGCATGTTAG+TGG - chr4.1:1784898-1784917 None:intergenic 45.0%
GCACAACTCGATTCCTCAAA+TGG + chr4.1:1785015-1785034 MS.gene052670:CDS 45.0%
GGAAGATACCTTGAGATCTG+GGG - chr4.1:1786807-1786826 None:intergenic 45.0%
GGAAGGCCTTAATGAACAGA+GGG - chr4.1:1787502-1787521 None:intergenic 45.0%
GGAGCAGGTGTAGAGAAATT+TGG - chr4.1:1786740-1786759 None:intergenic 45.0%
GTGGAAGATACCTTGAGATC+TGG - chr4.1:1786809-1786828 None:intergenic 45.0%
TAGCACAAAGATGTGGGTGA+AGG + chr4.1:1786387-1786406 MS.gene052670:CDS 45.0%
TCATCATCGTTGAAGTGCAG+AGG - chr4.1:1785108-1785127 None:intergenic 45.0%
TCTACTTCTTGGCCACCAAA+CGG - chr4.1:1786193-1786212 None:intergenic 45.0%
TGACACCCCAAAACTACACT+TGG - chr4.1:1786001-1786020 None:intergenic 45.0%
TGTAACAGGTGAGCTTAGGT+GGG + chr4.1:1787744-1787763 MS.gene052670:intron 45.0%
TGTGGCTGAGAAAGCAATCA+AGG + chr4.1:1786556-1786575 MS.gene052670:CDS 45.0%
TTGATGAGATCGTGTGGATG+AGG - chr4.1:1784949-1784968 None:intergenic 45.0%
! TGGTTTAGGGTTAGTGGCTA+AGG + chr4.1:1785035-1785054 MS.gene052670:CDS 45.0%
! TTATTGAAGCAGGGTGCTTC+AGG + chr4.1:1787983-1788002 MS.gene052670:CDS 45.0%
!! AGCACAACTGATTTGAGCCA+AGG - chr4.1:1787642-1787661 None:intergenic 45.0%
!! GCACAACTGATTTGAGCCAA+GGG - chr4.1:1787641-1787660 None:intergenic 45.0%
!! GTCAATTAGAGGGAGCATCA+TGG - chr4.1:1786311-1786330 None:intergenic 45.0%
!! TGGTGGTGGTAGTTGGAAAA+CGG + chr4.1:1784837-1784856 MS.gene052670:CDS 45.0%
AAGCCGGTAGCACAAAGATG+TGG + chr4.1:1786380-1786399 MS.gene052670:CDS 50.0%
AAGGAGACGGTCACTACTGA+AGG + chr4.1:1788103-1788122 MS.gene052670:CDS 50.0%
AGCCGGTAGCACAAAGATGT+GGG + chr4.1:1786381-1786400 MS.gene052670:CDS 50.0%
ATAAGTTCCTGCCATGGAGC+AGG - chr4.1:1786755-1786774 None:intergenic 50.0%
CACCCACATCTTTGTGCTAC+CGG - chr4.1:1786386-1786405 None:intergenic 50.0%
CCACCAAACGGATGCTTATC+TGG - chr4.1:1786181-1786200 None:intergenic 50.0%
CCAGATAAGCATCCGTTTGG+TGG + chr4.1:1786178-1786197 MS.gene052670:CDS 50.0%
GCTTTCTCAGCCACAACCTA+AGG - chr4.1:1786551-1786570 None:intergenic 50.0%
GGGAAGGCCTTAATGAACAG+AGG - chr4.1:1787503-1787522 None:intergenic 50.0%
GTGTGTGTGTGTGTGTGTCT+GGG - chr4.1:1786449-1786468 None:intergenic 50.0%
GTTGTGCCATCTTCACAGCA+CGG - chr4.1:1785002-1785021 None:intergenic 50.0%
TGCCAAACTGCAAATCCGCA+AGG - chr4.1:1786055-1786074 None:intergenic 50.0%
TGCCTTGCGGATTTGCAGTT+TGG + chr4.1:1786050-1786069 MS.gene052670:intron 50.0%
TGGAGAAACCCCAGATCTCA+AGG + chr4.1:1786796-1786815 MS.gene052670:CDS 50.0%
TGTGTGTGTGTGTGTGTGTC+TGG - chr4.1:1786450-1786469 None:intergenic 50.0%
TTACTTACCGGGAACATGGG+AGG - chr4.1:1785163-1785182 None:intergenic 50.0%
TTAGATGCTGAGGCTCCTCT+TGG + chr4.1:1787866-1787885 MS.gene052670:CDS 50.0%
! GAGGATTCAGGTTCAAACCC+CGG - chr4.1:1787605-1787624 None:intergenic 50.0%
! GCTCTGTGTGTCATTGCACT+AGG + chr4.1:1787926-1787945 MS.gene052670:CDS 50.0%
! TCTTTTGGATGCTGCGAGCA+TGG + chr4.1:1786697-1786716 MS.gene052670:CDS 50.0%
!! CTGGTGCTGGTCACAAATGT+TGG - chr4.1:1785846-1785865 None:intergenic 50.0%
ATCTGCAGTGCAGTGCAGAG+AGG - chr4.1:1785591-1785610 None:intergenic 55.0%
CGTTCACCGTGCTGTGAAGA+TGG + chr4.1:1784993-1785012 MS.gene052670:CDS 55.0%
GTCTGGGAGAGGAGTCATGA+AGG - chr4.1:1786433-1786452 None:intergenic 55.0%
TGTGTGTGTGTGTCTGGGAG+AGG - chr4.1:1786444-1786463 None:intergenic 55.0%
CTCTACACCTGCTCCATGGC+AGG + chr4.1:1786745-1786764 MS.gene052670:CDS 60.0%
GATGCTGCGAGCATGGCAGC+TGG + chr4.1:1786704-1786723 MS.gene052670:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 1784826 1788129 1784826 ID=MS.gene052670
chr4.1 mRNA 1784826 1788129 1784826 ID=MS.gene052670.t1;Parent=MS.gene052670
chr4.1 exon 1784826 1785174 1784826 ID=MS.gene052670.t1.exon1;Parent=MS.gene052670.t1
chr4.1 CDS 1784826 1785174 1784826 ID=cds.MS.gene052670.t1;Parent=MS.gene052670.t1
chr4.1 exon 1785345 1785511 1785345 ID=MS.gene052670.t1.exon2;Parent=MS.gene052670.t1
chr4.1 CDS 1785345 1785511 1785345 ID=cds.MS.gene052670.t1;Parent=MS.gene052670.t1
chr4.1 exon 1786109 1786408 1786109 ID=MS.gene052670.t1.exon3;Parent=MS.gene052670.t1
chr4.1 CDS 1786109 1786408 1786109 ID=cds.MS.gene052670.t1;Parent=MS.gene052670.t1
chr4.1 exon 1786554 1786817 1786554 ID=MS.gene052670.t1.exon4;Parent=MS.gene052670.t1
chr4.1 CDS 1786554 1786817 1786554 ID=cds.MS.gene052670.t1;Parent=MS.gene052670.t1
chr4.1 exon 1787752 1788129 1787752 ID=MS.gene052670.t1.exon5;Parent=MS.gene052670.t1
chr4.1 CDS 1787752 1788129 1787752 ID=cds.MS.gene052670.t1;Parent=MS.gene052670.t1
Gene Sequence

>MS.gene052670

ATGGTTATAGTTGGTGGTGGTAGTTGGAAAACGGCGATGTTAATGTCATCGTCGTTGAGTCACGTGCGTCCACTAACATGCGCATCTTCATCTTCATCTTCATCTTCATCACGAATAGCTCCTCATCCACACGATCTCATCAAATGGGTAACAAGAGAAGGTGGATTCGTTCACCGTGCTGTGAAGATGGCACAACTCGATTCCTCAAATGGTTTAGGGTTAGTGGCTAAGGAAGATATCCCAATTGGTACTGACCTAATTGCTCTTCCTCAACACATTCCTCTGCACTTCAACGATGATGATCGCAACTCTCACTCTCTCCTCCTTCAATTAACCTCCCATGTTCCCGGTAAGTAAAATTACCAGCTCAATTAGCTCATGAATTTGTATCTGTATGATAAGAAGAATTTATGTTATAAGCATTTAATTAAATGTTTATCCAAACAAGACTCTAGAAAGAAATAGTATTGAGTTGTCGTCGATGTTGAATAAATTGGACAATGTGGTAGCATTTGGCAGATGAATTGTGGGCAATGAAACTGGGTTTGAAGCTTCTTCATGAAAGGGCAAAACTTGGATCTTTTTGGTGGCCATACATCAGTAATCTCCCACAAACTTACACTCTTCCTATTTTCTTTCCTGGGGAAGACATCAAGAATTTGCACTATGCTCCTATTCTTCACCAGGTACACTTTACTTACTGTTAATCATTTTCGACTATACTATGTTATATGAAAAAAAAATTAGTATAATGCTTTGTGGCCTCTCTGCACTGCACTGCAGATTGCTAATCAAGAAAAGAAAAATGCAATTTTGTTCATCTTCATTTTGACTAGAGAAATGCATATAAGTATACGGCATATAATTAAGAATCTGTTGAACTATGATTTTTGTGTAAAAACCAGTGGTAAAATTCGGTGTAAATAATGTTGGTAGGTTTTTATTACTTCTCTCAGTCCTCACAAGAGCAATGTGCAACTTGTTCTCTTTGAAACATTTGAAATATTCTTAAGATATCCAACATTTGTGACCAGCACCAGAAGCTACAATTGTCTATCTCAGTGTCTATTAATTATGTGGCTTAATTGCACTTTTGACTCCTAATTATCACGATTTAGTTATTTTTGTCCCCCACTTTTGAAATGAGCAATTTGGATCCGCATAGTTTATCTCCAAGTGTAGTTTTGGGGTGTCAAAAATGCAATTAAGTCTAATTATTTTGAATGCCTTGCGGATTTGCAGTTTGGCAGCTAATTTTGTCAAATTCATGAATCACGAGACAGGTAAACAAAAGATGCCGATTTCTTCTTGATTTTGAGCAAAAAGTCAAGCATGCATTAGTCGGTCTTACACCAGATAAGCATCCGTTTGGTGGCCAAGAAGTAGATGCTTCATCTCTTGGATGGGCGATGTCAGCAGTTTCATCAAGAGCATTCAAGTTACATGGTAACAAGCAATCAAATGGGATAAACTTTGACATTCCCATGATGCTCCCTCTAATTGACATGTGTAATCATAGTTTCAATCCAAATGCTAGAATTGTTCAGGAACAAGAAGCCGGTAGCACAAAGATGTGGGTGAAGGCATGTTATTTCATACTCTTTCCTTCATGACTCCTCTCCCAGACACACACACACACACACACACACGCTCACACGTCAAATTCTGCTTTTAGAAACAACTATTCTTTAGATTTTTCTTTGCTGAGAAATTCAATATTTACCTTAGGTTGTGGCTGAGAAAGCAATCAAGGAAGATGACCCTTTATTACTTTGCTATGGATGTTTAAGCAATGATCTTTTCCTTCTTGATTATGGATTTGTGATACAGTCAAACCCTTATGACTGTATCGAGCTCAAATATGATGGTGCTCTTTTGGATGCTGCGAGCATGGCAGCTGGAGTTTCTTCACCAAATTTCTCTACACCTGCTCCATGGCAGGAACTTATTCTATCTCATCTAAATCTAGCTGGAGAAACCCCAGATCTCAAGGTATCTTCCACAAAATTCTATAGCTGTATTTAATTACTACTATTTAAAAATGAAAACTACTATTGGATGTTAAATAAGTGCTCTTACTCTTTCTATTAAAGAAATGACATTTTGACACACAAATTTGACATAAAATTTTGACAAATATTTAGAATGTTAGCGCTGTTAAAGTATGTGGTTAATTACGTCCATTGAATGGTTAATAAATATAAATATAACAAATTGTTGCAATTCATTAATGATATACTCAACACCGTTAACGACCATTTTGAATGTCATTAATCTCAATGTTCATTTGAGTATGTTTGAACACAAATTGTGGTTAATGAATATCATATATAAATATTTGAACACCTTAAAATCATGTATATTTGAATCCAGTTTGGATGATTAATATATGGATATATGAATATATGTGTTTGTGTGTGTTGGAAAACCTGAAAAATTATGTATAATGACGTTCAAAATCGCAGTTTATTTTCATCAATCATCTAATGAATGTAATTGACCATATATACTTAACGATCTAAATGTTTAATTTTGATGTCAAGTTTGTATGTCAAAAAAACACAACTCTTTCTATTATATAAGCTTACTGTACTTTGCAGAAAGGTTTAATCTCTTCTTTGTAGATGCATCAATACTACGTCCATAATCCATTATTTTTACGCATTATGTTTTCCCTCTGTTCATTAAGGCCTTCCCATAGAATAACTATGAACTTTCATAGTAATGTTTTTATAGCAAATATTGGTAATTAGTTATATTAGTATTGTCTCTTTCACCGGGGTTTGAACCTGAATCCTCTTAACTTATTCAACCCTTGGCTCAAATCAGTTGTGCTACTCAACTTCCCAAAACTTTCATATCAATTGGTTGATGTTAGCACAAGAGCCATAAGGTCATAATTTGATTTACTTTTTTCATGTAACAGGTGAGCTTAGGTGGGCAAGAAATAATAGAAGGTCGTTTGTTGGCTGCACTAAGAGTACTCCTTGCAAGTGATATGGCAAGTGTACAAAAGCATGACCTCAACACACTTAAGTCTTTAGATGCTGAGGCTCCTCTTGGTGTTGCAAATGACCTTGCTGTATTTCGTACCTTGATTGCTCTGTGTGTCATTGCACTAGGACACTTTCCCACCAAATTAATGGATGATGAATCTTTATTGAAGCAGGGTGCTTCAGGTTCAACAGAATTAGCCATTCAGTTCAGAATCCAAAAGAAGTCTGTAATTATAGATGTAATGAAAAACCTCTCAAGGAAGGTAAAGCTTCTTTCATCAAAGGAGACGGTCACTACTGAAGGCTAA

Protein sequence

>MS.gene052670.t1

MVIVGGGSWKTAMLMSSSLSHVRPLTCASSSSSSSSSRIAPHPHDLIKWVTREGGFVHRAVKMAQLDSSNGLGLVAKEDIPIGTDLIALPQHIPLHFNDDDRNSHSLLLQLTSHVPDELWAMKLGLKLLHERAKLGSFWWPYISNLPQTYTLPIFFPGEDIKNLHYAPILHQVNKRCRFLLDFEQKVKHALVGLTPDKHPFGGQEVDASSLGWAMSAVSSRAFKLHGNKQSNGINFDIPMMLPLIDMCNHSFNPNARIVQEQEAGSTKMWVKVVAEKAIKEDDPLLLCYGCLSNDLFLLDYGFVIQSNPYDCIELKYDGALLDAASMAAGVSSPNFSTPAPWQELILSHLNLAGETPDLKVSLGGQEIIEGRLLAALRVLLASDMASVQKHDLNTLKSLDAEAPLGVANDLAVFRTLIALCVIALGHFPTKLMDDESLLKQGASGSTELAIQFRIQKKSVIIDVMKNLSRKVKLLSSKETVTTEG