Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40322.t1 | XP_013461985.1 | 99.8 | 418 | 1 | 0 | 1 | 418 | 41 | 458 | 4.60E-237 | 830.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40322.t1 | P28011 | 99.8 | 418 | 1 | 0 | 1 | 418 | 1 | 418 | 1.9e-239 | 829.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40322.t1 | A0A072V2E4 | 99.8 | 418 | 1 | 0 | 1 | 418 | 1 | 418 | 3.3e-237 | 830.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene40322 | -0.801642 | 8.18E-49 | -1.69E-46 |
| MS.gene050353 | MS.gene40322 | 0.837709 | 4.43E-57 | -1.69E-46 |
| MS.gene050354 | MS.gene40322 | 0.833574 | 4.93E-56 | -1.69E-46 |
| MS.gene050380 | MS.gene40322 | 0.803409 | 3.53E-49 | -1.69E-46 |
| MS.gene050800 | MS.gene40322 | 0.869472 | 3.02E-66 | -1.69E-46 |
| MS.gene050926 | MS.gene40322 | 0.822094 | 2.85E-53 | -1.69E-46 |
| MS.gene050937 | MS.gene40322 | 0.812852 | 3.44E-51 | -1.69E-46 |
| MS.gene051113 | MS.gene40322 | 0.821515 | 3.87E-53 | -1.69E-46 |
| MS.gene05141 | MS.gene40322 | 0.811987 | 5.32E-51 | -1.69E-46 |
| MS.gene051694 | MS.gene40322 | -0.845958 | 2.93E-59 | -1.69E-46 |
| MS.gene05234 | MS.gene40322 | 0.829075 | 6.31E-55 | -1.69E-46 |
| MS.gene053421 | MS.gene40322 | 0.834533 | 2.84E-56 | -1.69E-46 |
| MS.gene053632 | MS.gene40322 | -0.807531 | 4.83E-50 | -1.69E-46 |
| MS.gene054422 | MS.gene40322 | 0.802858 | 4.59E-49 | -1.69E-46 |
| MS.gene054435 | MS.gene40322 | 0.819409 | 1.18E-52 | -1.69E-46 |
| MS.gene054437 | MS.gene40322 | 0.826369 | 2.82E-54 | -1.69E-46 |
| MS.gene054447 | MS.gene40322 | 0.824527 | 7.69E-54 | -1.69E-46 |
| MS.gene056942 | MS.gene40322 | -0.80321 | 3.89E-49 | -1.69E-46 |
| MS.gene060482 | MS.gene40322 | -0.804246 | 2.37E-49 | -1.69E-46 |
| MS.gene060602 | MS.gene40322 | 0.817131 | 3.87E-52 | -1.69E-46 |
| MS.gene061226 | MS.gene40322 | 0.815269 | 1.01E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene33167 | MS.gene40322 | PPI |
| MS.gene40322 | MS.gene060918 | PPI |
| MS.gene40322 | MS.gene016021 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40322.t1 | MTR_3g110065 | 99.761 | 418 | 1 | 0 | 1 | 418 | 41 | 458 | 0.0 | 856 |
| MS.gene40322.t1 | MTR_3g110065 | 99.761 | 418 | 1 | 0 | 1 | 418 | 1 | 418 | 0.0 | 855 |
| MS.gene40322.t1 | MTR_3g110065 | 99.744 | 391 | 1 | 0 | 1 | 391 | 41 | 431 | 0.0 | 804 |
| MS.gene40322.t1 | MTR_1g013050 | 56.250 | 400 | 173 | 2 | 12 | 410 | 59 | 457 | 1.25e-164 | 471 |
| MS.gene40322.t1 | MTR_4g080140 | 50.877 | 399 | 194 | 1 | 16 | 414 | 25 | 421 | 2.54e-146 | 422 |
| MS.gene40322.t1 | MTR_4g080130 | 48.622 | 399 | 196 | 3 | 16 | 413 | 20 | 410 | 1.36e-134 | 392 |
| MS.gene40322.t1 | MTR_4g014910 | 50.000 | 54 | 27 | 0 | 288 | 341 | 23 | 76 | 5.32e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40322.t1 | AT5G11520 | 81.731 | 416 | 76 | 0 | 1 | 416 | 32 | 447 | 0.0 | 731 |
| MS.gene40322.t1 | AT5G19550 | 83.127 | 403 | 68 | 0 | 15 | 417 | 2 | 404 | 0.0 | 717 |
| MS.gene40322.t1 | AT1G62800 | 72.772 | 404 | 110 | 0 | 15 | 418 | 2 | 405 | 0.0 | 640 |
| MS.gene40322.t1 | AT1G62800 | 72.277 | 404 | 110 | 1 | 15 | 418 | 2 | 403 | 0.0 | 632 |
| MS.gene40322.t1 | AT1G62800 | 70.710 | 338 | 99 | 0 | 15 | 352 | 2 | 339 | 0.0 | 525 |
| MS.gene40322.t1 | AT4G31990 | 54.545 | 396 | 178 | 2 | 16 | 410 | 51 | 445 | 2.87e-161 | 462 |
| MS.gene40322.t1 | AT4G31990 | 54.545 | 396 | 178 | 2 | 16 | 410 | 51 | 445 | 2.87e-161 | 462 |
| MS.gene40322.t1 | AT4G31990 | 54.545 | 396 | 178 | 2 | 16 | 410 | 46 | 440 | 9.15e-161 | 460 |
| MS.gene40322.t1 | AT4G31990 | 54.545 | 396 | 178 | 2 | 16 | 410 | 51 | 445 | 1.03e-160 | 461 |
| MS.gene40322.t1 | AT2G30970 | 52.174 | 391 | 185 | 1 | 24 | 414 | 39 | 427 | 8.00e-148 | 427 |
| MS.gene40322.t1 | AT2G30970 | 52.174 | 391 | 185 | 1 | 24 | 414 | 39 | 427 | 8.00e-148 | 427 |
Find 113 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACCCAAGTTGAGCTTAAT+TGG | 0.150989 | 3.4:+94953316 | None:intergenic |
| GCGAAGAACATGGGTCTTTA+TGG | 0.189310 | 3.4:-94951236 | MS.gene40322:CDS |
| TTTCTTTGACAGTGCTTATC+AGG | 0.256759 | 3.4:-94951595 | MS.gene40322:intron |
| AGTCACATTATCAAGCAAAT+TGG | 0.295698 | 3.4:-94950406 | MS.gene40322:CDS |
| ACCACTGTTCAAGGCTTATC+TGG | 0.296478 | 3.4:-94952187 | MS.gene40322:CDS |
| AGCCAGATGTGGGACTGTTT+TGG | 0.314178 | 3.4:+94949647 | None:intergenic |
| GCCCTGCTATTCAAGAGAAC+AGG | 0.323064 | 3.4:-94952213 | MS.gene40322:CDS |
| AAGTCAAGCCCTCGTGTTGC+TGG | 0.342959 | 3.4:+94951916 | None:intergenic |
| CATCAGATGTCAGGTATATA+TGG | 0.350575 | 3.4:+94950326 | None:intergenic |
| GATCTTGGTTCTGCCCCATC+TGG | 0.359579 | 3.4:-94951726 | MS.gene40322:CDS |
| TACTCAAGTCCTCCTATTCA+TGG | 0.370617 | 3.4:-94950870 | MS.gene40322:CDS |
| AAGGAGTATATTCCAATTGT+TGG | 0.372264 | 3.4:-94952497 | MS.gene40322:CDS |
| TGCTGATGGTGGAGAATTGC+TGG | 0.380748 | 3.4:-94951273 | MS.gene40322:CDS |
| ACAGGACTTCTTGAGGATCT+TGG | 0.382872 | 3.4:-94951741 | MS.gene40322:intron |
| TATACTTGCCAACACCTACT+TGG | 0.385684 | 3.4:-94952002 | MS.gene40322:CDS |
| GTACTGGTTCGCTAAGAGTT+GGG | 0.400671 | 3.4:-94952165 | MS.gene40322:CDS |
| CACCCAAGTTGAGCTTAATT+GGG | 0.413455 | 3.4:+94953317 | None:intergenic |
| CTCCAAAACAGTCCCACATC+TGG | 0.425931 | 3.4:-94949649 | MS.gene40322:CDS |
| ATTGGAATGTTTACTTTCAC+AGG | 0.428060 | 3.4:-94950388 | MS.gene40322:CDS |
| GTTCAAGGCTTATCTGGTAC+TGG | 0.432196 | 3.4:-94952181 | MS.gene40322:CDS |
| ACACCGAGGATAGGATCTTC+AGG | 0.432488 | 3.4:+94953790 | None:intergenic |
| ATACTTGCCAACACCTACTT+GGG | 0.432758 | 3.4:-94952001 | MS.gene40322:CDS |
| AAGTTGAGCTTAATTGGGCT+TGG | 0.436518 | 3.4:+94953322 | None:intergenic |
| AGGAGTATATTCCAATTGTT+GGG | 0.451682 | 3.4:-94952496 | MS.gene40322:CDS |
| TGCAGGAGGATTAGCATGGC+TGG | 0.453349 | 3.4:-94949678 | MS.gene40322:intron |
| AACAGGGTTACCACTGTTCA+AGG | 0.453722 | 3.4:-94952196 | MS.gene40322:CDS |
| ACCCTGTTCTCTTGAATAGC+AGG | 0.458243 | 3.4:+94952211 | None:intergenic |
| GTTCGTTTGTTTGTTGCTGA+TGG | 0.463816 | 3.4:-94951287 | MS.gene40322:CDS |
| TGATCCAACGCTTGAACAAT+GGG | 0.468112 | 3.4:-94951658 | MS.gene40322:CDS |
| CCATGTTCTTCGCATAACTC+TGG | 0.469261 | 3.4:+94951246 | None:intergenic |
| AAATCAGCGAGCCCAACAAT+TGG | 0.471038 | 3.4:+94952485 | None:intergenic |
| ACACGAGGGCTTGACTTTCA+AGG | 0.475131 | 3.4:-94951910 | MS.gene40322:intron |
| CATATATACCTGACATCTGA+TGG | 0.476268 | 3.4:-94950325 | MS.gene40322:CDS |
| TGACTGGACTATTGAGTTGA+AGG | 0.476617 | 3.4:-94950724 | MS.gene40322:CDS |
| ACAATGGATGCACCATGAAT+AGG | 0.476661 | 3.4:+94950858 | None:intergenic |
| CATTGAAATTTAAGCAACTC+GGG | 0.476742 | 3.4:+94949602 | None:intergenic |
| TGCTCCCATTGTTCAAGCGT+TGG | 0.479098 | 3.4:+94951654 | None:intergenic |
| GGTACTGGTTCGCTAAGAGT+TGG | 0.481361 | 3.4:-94952166 | MS.gene40322:CDS |
| GTCAAGATGGAAACTTGCTC+AGG | 0.481636 | 3.4:+94950358 | None:intergenic |
| AATAGGAGGACTTGAGTACA+TGG | 0.483790 | 3.4:+94950875 | None:intergenic |
| GCCAACTGAAACTTGTGATT+AGG | 0.484457 | 3.4:-94950899 | MS.gene40322:CDS |
| CAAACATGTCATTCAATAGT+TGG | 0.485862 | 3.4:+94952621 | None:intergenic |
| TCAGGGATTTGTACAATGAC+TGG | 0.487365 | 3.4:-94950740 | MS.gene40322:intron |
| ATGGTACTCTTTAGTCAAGA+TGG | 0.489731 | 3.4:+94950345 | None:intergenic |
| TTGATCCAACGCTTGAACAA+TGG | 0.495724 | 3.4:-94951659 | MS.gene40322:CDS |
| GAATAGGTACACCAGGTGAT+TGG | 0.497772 | 3.4:-94950429 | MS.gene40322:intron |
| TCAGCAACAAACAAACGAAC+AGG | 0.500179 | 3.4:+94951290 | None:intergenic |
| TCAGAAGAAGCGGTTGGAGA+AGG | 0.502905 | 3.4:+94953841 | None:intergenic |
| TACTGGTTCGCTAAGAGTTG+GGG | 0.504319 | 3.4:-94952164 | MS.gene40322:CDS |
| TGTCTTACCCATCAGATGTC+AGG | 0.505685 | 3.4:+94950317 | None:intergenic |
| TCACTACCTGTCCTTGAGAA+TGG | 0.510089 | 3.4:+94950830 | None:intergenic |
| AAGCCCAATTAAGCTCAACT+TGG | 0.516784 | 3.4:-94953320 | MS.gene40322:CDS |
| CGTTTGTTTGTTGCTGATGG+TGG | 0.521870 | 3.4:-94951284 | MS.gene40322:CDS |
| CCAGAGTTATGCGAAGAACA+TGG | 0.522554 | 3.4:-94951246 | MS.gene40322:CDS |
| CTTGAGAATGGCGGCCACAA+TGG | 0.525791 | 3.4:+94950842 | None:intergenic |
| ATTAAGCTCAACTTGGGTGT+TGG | 0.529955 | 3.4:-94953313 | MS.gene40322:CDS |
| ACGAACGAGATGAGCGAAGA+CGG | 0.543404 | 3.4:+94953816 | None:intergenic |
| ATCTGCATCTAGACTTCCAC+TGG | 0.543479 | 3.4:+94951319 | None:intergenic |
| CATGTTCTTCGCATAACTCT+GGG | 0.545873 | 3.4:+94951247 | None:intergenic |
| TGGCCGCCATTCTCAAGGAC+AGG | 0.547950 | 3.4:-94950836 | MS.gene40322:intron |
| ATAAGATTCTAACCTCAGTT+CGG | 0.549064 | 3.4:+94953284 | None:intergenic |
| TGATAAGCACTGTCAAAGAA+AGG | 0.550216 | 3.4:+94951597 | None:intergenic |
| TTTGTATGATTGCCCCAAGT+AGG | 0.551425 | 3.4:+94951988 | None:intergenic |
| AGTCAGCGGATGTTTCAAGC+AGG | 0.552000 | 3.4:-94950929 | MS.gene40322:CDS |
| GTTCCTTACAGGACTTCTTG+AGG | 0.552621 | 3.4:-94951748 | MS.gene40322:intron |
| ACATTGAAATTTAAGCAACT+CGG | 0.554651 | 3.4:+94949601 | None:intergenic |
| GCCTAATCACAAGTTTCAGT+TGG | 0.558972 | 3.4:+94950898 | None:intergenic |
| GCAAAACAACAGATCCAGAT+GGG | 0.564621 | 3.4:+94951712 | None:intergenic |
| TTTGATGCTTTACGTGCTAG+AGG | 0.574452 | 3.4:-94950663 | MS.gene40322:intron |
| ACGGAATCAGAAGAAGCGGT+TGG | 0.574811 | 3.4:+94953835 | None:intergenic |
| TGAAATGCTTACAATGCTCA+AGG | 0.575001 | 3.4:+94951199 | None:intergenic |
| CATTGTGGCCGCCATTCTCA+AGG | 0.579863 | 3.4:-94950841 | MS.gene40322:CDS |
| GGAAGGTAAACCCCTTGTGT+TGG | 0.582281 | 3.4:-94952666 | MS.gene40322:CDS |
| GCTCCTGAAGATCCTATCCT+CGG | 0.583735 | 3.4:-94953793 | MS.gene40322:CDS |
| TGCAATTGAATAGGTACACC+AGG | 0.584729 | 3.4:-94950436 | MS.gene40322:intron |
| CCCTGCTATTCAAGAGAACA+GGG | 0.585827 | 3.4:-94952212 | MS.gene40322:CDS |
| TACTATGCTCCAGCAACACG+AGG | 0.591280 | 3.4:-94951925 | MS.gene40322:CDS |
| AGCGTTGGATCAACACCAGT+AGG | 0.595444 | 3.4:+94951669 | None:intergenic |
| GGTCTTTATGGTGAACGTGT+TGG | 0.597249 | 3.4:-94951224 | MS.gene40322:CDS |
| AGCCCAATTAAGCTCAACTT+GGG | 0.600473 | 3.4:-94953319 | MS.gene40322:CDS |
| CCCTGTTCTCTTGAATAGCA+GGG | 0.601948 | 3.4:+94952212 | None:intergenic |
| GCCTCACAACATCCAACACA+AGG | 0.602594 | 3.4:+94952654 | None:intergenic |
| ATATATACCTGACATCTGAT+GGG | 0.603581 | 3.4:-94950324 | MS.gene40322:intron |
| GCATGTGCACATAACCCTAC+TGG | 0.605334 | 3.4:-94951684 | MS.gene40322:CDS |
| AACAAACATACACCGAGGAT+AGG | 0.605565 | 3.4:+94953781 | None:intergenic |
| ACCAGATAAGCCTTGAACAG+TGG | 0.611040 | 3.4:+94952186 | None:intergenic |
| GTCAGCGGATGTTTCAAGCA+GGG | 0.615517 | 3.4:-94950928 | MS.gene40322:CDS |
| TATTCATGGTGCATCCATTG+TGG | 0.615918 | 3.4:-94950856 | MS.gene40322:CDS |
| AGCAAAACAACAGATCCAGA+TGG | 0.618409 | 3.4:+94951711 | None:intergenic |
| GACTATTGAGTTGAAGGCAA+TGG | 0.618768 | 3.4:-94950718 | MS.gene40322:CDS |
| CAGAGTTATGCGAAGAACAT+GGG | 0.621421 | 3.4:-94951245 | MS.gene40322:CDS |
| ATGGATGCACCATGAATAGG+AGG | 0.622449 | 3.4:+94950861 | None:intergenic |
| TTGGAATGTTTACTTTCACA+GGG | 0.622534 | 3.4:-94950387 | MS.gene40322:CDS |
| GCGTTGGATCAACACCAGTA+GGG | 0.625083 | 3.4:+94951670 | None:intergenic |
| TGTATTGCATCAGCCAGATG+TGG | 0.629141 | 3.4:+94949636 | None:intergenic |
| ATTGTGCAGGAGGATTAGCA+TGG | 0.631015 | 3.4:-94949682 | MS.gene40322:intron |
| TCCCCAGGTCAGCAAGTCAG+CGG | 0.637569 | 3.4:-94950943 | MS.gene40322:intron |
| GTATTGCATCAGCCAGATGT+GGG | 0.644231 | 3.4:+94949637 | None:intergenic |
| GAAGACGGAATCAGAAGAAG+CGG | 0.647565 | 3.4:+94953831 | None:intergenic |
| CCCTTGTGTTGGATGTTGTG+AGG | 0.649198 | 3.4:-94952655 | MS.gene40322:CDS |
| GGTAACTGTCGCTTACAACA+AGG | 0.650998 | 3.4:-94953347 | MS.gene40322:CDS |
| TACTTGGGGCAATCATACAA+AGG | 0.652701 | 3.4:-94951986 | MS.gene40322:CDS |
| CTCACAACATCCAACACAAG+GGG | 0.662888 | 3.4:+94952656 | None:intergenic |
| TGATTGCCCCAAGTAGGTGT+TGG | 0.664181 | 3.4:+94951994 | None:intergenic |
| TACTTGCCAACACCTACTTG+GGG | 0.669923 | 3.4:-94952000 | MS.gene40322:CDS |
| TGTTGGTGCTTACCGAACTG+AGG | 0.670501 | 3.4:-94953296 | MS.gene40322:intron |
| ATAATGTGACTCCAATCACC+TGG | 0.679037 | 3.4:+94950418 | None:intergenic |
| CCTCACAACATCCAACACAA+GGG | 0.691571 | 3.4:+94952655 | None:intergenic |
| ACTGGTTCGCTAAGAGTTGG+GGG | 0.694356 | 3.4:-94952163 | MS.gene40322:CDS |
| CTACCTGTCCTTGAGAATGG+CGG | 0.699592 | 3.4:+94950833 | None:intergenic |
| ACTATGCTCCAGCAACACGA+GGG | 0.711939 | 3.4:-94951924 | MS.gene40322:CDS |
| CAAAACAACAGATCCAGATG+GGG | 0.713598 | 3.4:+94951713 | None:intergenic |
| ATAGGAGGACTTGAGTACAT+GGG | 0.714033 | 3.4:+94950876 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGCATAATAATTTAAAAAT+TGG | - | chr3.4:94950294-94950313 | MS.gene40322:intron | 10.0% |
| !! | TTAGTTAAAAAAATATAAAG+GGG | + | chr3.4:94951392-94951411 | None:intergenic | 10.0% |
| !!! | AAGAATTTATTTTGTTATTA+AGG | - | chr3.4:94953435-94953454 | MS.gene40322:intron | 10.0% |
| !!! | AATTTTTTTTTTTTTTTTGG+TGG | + | chr3.4:94951192-94951211 | None:intergenic | 10.0% |
| !!! | ATTTTTAAATTATTATGCAT+TGG | + | chr3.4:94950294-94950313 | None:intergenic | 10.0% |
| !! | CAAAAAAAAAAAAAAAACAG+AGG | + | chr3.4:94950076-94950095 | None:intergenic | 15.0% |
| !!! | ATTAAATGGAGATAATTTTA+TGG | - | chr3.4:94952301-94952320 | MS.gene40322:intron | 15.0% |
| !!! | TTAAATGGAGATAATTTTAT+GGG | - | chr3.4:94952302-94952321 | MS.gene40322:intron | 15.0% |
| !! | AAATGAATGATTACACATAA+GGG | + | chr3.4:94953732-94953751 | None:intergenic | 20.0% |
| !! | AATATCACAAATCTTATGTT+AGG | - | chr3.4:94950576-94950595 | MS.gene40322:intron | 20.0% |
| !! | CATAATTGGATTTCATTTAA+TGG | - | chr3.4:94951687-94951706 | MS.gene40322:CDS | 20.0% |
| !! | TAAATGAATGATTACACATA+AGG | + | chr3.4:94953733-94953752 | None:intergenic | 20.0% |
| !! | TACATACTTTCAAAAATCTT+TGG | + | chr3.4:94953557-94953576 | None:intergenic | 20.0% |
| !! | TCAATACTCAATAACATAAT+TGG | - | chr3.4:94951673-94951692 | MS.gene40322:CDS | 20.0% |
| !! | TTATTAACAGCAAAAGAAAT+TGG | + | chr3.4:94953300-94953319 | None:intergenic | 20.0% |
| !! | TTCAATAAAAGAATATGCAT+TGG | + | chr3.4:94952091-94952110 | None:intergenic | 20.0% |
| !!! | AATCATCAGTAACAAAATTT+TGG | + | chr3.4:94950039-94950058 | None:intergenic | 20.0% |
| !!! | AGGTTAGAATCTTATTTATT+TGG | - | chr3.4:94950197-94950216 | MS.gene40322:intron | 20.0% |
| !!! | ATTTATTTTGTTATTAAGGC+TGG | - | chr3.4:94953439-94953458 | MS.gene40322:intron | 20.0% |
| !!! | GGTTAGAATCTTATTTATTT+GGG | - | chr3.4:94950198-94950217 | MS.gene40322:intron | 20.0% |
| !!! | GTTTTCTCATAAACTATTTT+GGG | - | chr3.4:94950481-94950500 | MS.gene40322:intron | 20.0% |
| !!! | TAATCATCTTTTGCATAATT+TGG | - | chr3.4:94950641-94950660 | MS.gene40322:intron | 20.0% |
| !!! | TGTTTTCTCATAAACTATTT+TGG | - | chr3.4:94950480-94950499 | MS.gene40322:intron | 20.0% |
| !!! | TTTTCTCATAAACTATTTTG+GGG | - | chr3.4:94950482-94950501 | MS.gene40322:intron | 20.0% |
| ! | AAAAGATGATTATGCAGTAT+AGG | + | chr3.4:94950633-94950652 | None:intergenic | 25.0% |
| ! | AAGATTCAAGAGATTAGAAA+TGG | + | chr3.4:94951998-94952017 | None:intergenic | 25.0% |
| ! | ACTCTTTCTTTACTATCAAA+TGG | + | chr3.4:94950454-94950473 | None:intergenic | 25.0% |
| ! | AGGGAAAAAATCATATTGAA+TGG | + | chr3.4:94952369-94952388 | None:intergenic | 25.0% |
| ! | AGTTATGCATAATTTATGCA+AGG | - | chr3.4:94951155-94951174 | MS.gene40322:intron | 25.0% |
| ! | ATTGTAGAAAAGGAAAATCA+GGG | + | chr3.4:94952504-94952523 | None:intergenic | 25.0% |
| ! | CAACTCAAATAAATGTTTCA+TGG | + | chr3.4:94953004-94953023 | None:intergenic | 25.0% |
| ! | GGGAAAAAATCATATTGAAT+GGG | + | chr3.4:94952368-94952387 | None:intergenic | 25.0% |
| ! | TAATATTGCTGTATATCGTT+GGG | - | chr3.4:94951409-94951428 | MS.gene40322:intron | 25.0% |
| ! | TATTGATCATGATGCATATT+GGG | + | chr3.4:94951659-94951678 | None:intergenic | 25.0% |
| ! | TATTGTAGAAAAGGAAAATC+AGG | + | chr3.4:94952505-94952524 | None:intergenic | 25.0% |
| ! | TGACTTGATTAAGAGAATAA+TGG | + | chr3.4:94953369-94953388 | None:intergenic | 25.0% |
| ! | TTGATACAAATGCGAAAATA+AGG | + | chr3.4:94951625-94951644 | None:intergenic | 25.0% |
| !! | AAAAGAAAGTATAGTGAATC+AGG | + | chr3.4:94950880-94950899 | None:intergenic | 25.0% |
| !! | AAGCATTTCAAAGCATTAAA+TGG | - | chr3.4:94952287-94952306 | MS.gene40322:intron | 25.0% |
| !! | AATCTTATTTATTTGGGATG+TGG | - | chr3.4:94950204-94950223 | MS.gene40322:intron | 25.0% |
| !! | TGAAATATATAGGCATTGTT+TGG | - | chr3.4:94950373-94950392 | MS.gene40322:CDS | 25.0% |
| !! | TTTTTCTACATAAAGAAGCT+TGG | - | chr3.4:94952448-94952467 | MS.gene40322:CDS | 25.0% |
| !!! | ACATCTATTTTTGTTCAACA+GGG | - | chr3.4:94952126-94952145 | MS.gene40322:intron | 25.0% |
| !!! | GTCTTCATTCTGAAATATAT+AGG | - | chr3.4:94950363-94950382 | MS.gene40322:CDS | 25.0% |
| !!! | GTTGCATTCTTTTTAGTTTA+AGG | - | chr3.4:94953613-94953632 | MS.gene40322:intron | 25.0% |
| AAAGTATGTACTGTTTGATG+TGG | - | chr3.4:94953567-94953586 | MS.gene40322:intron | 30.0% | |
| AAGAATATGCATTGGAGATA+TGG | + | chr3.4:94952083-94952102 | None:intergenic | 30.0% | |
| ACATGATTCAAATCATAAGC+AGG | + | chr3.4:94952389-94952408 | None:intergenic | 30.0% | |
| AGTCACATTATCAAGCAAAT+TGG | - | chr3.4:94953067-94953086 | MS.gene40322:intron | 30.0% | |
| ATAAAGGGGATAGAAAGTTA+AGG | + | chr3.4:94951378-94951397 | None:intergenic | 30.0% | |
| ATAAGATTCTAACCTCAGTT+CGG | + | chr3.4:94950192-94950211 | None:intergenic | 30.0% | |
| ATATATACCTGACATCTGAT+GGG | - | chr3.4:94953149-94953168 | MS.gene40322:intron | 30.0% | |
| ATCTTAATGAGATGCGAAAT+TGG | + | chr3.4:94949791-94949810 | None:intergenic | 30.0% | |
| ATTGAATGGGATGAAATACA+AGG | + | chr3.4:94952355-94952374 | None:intergenic | 30.0% | |
| ATTGGAATGTTTACTTTCAC+AGG | - | chr3.4:94953085-94953104 | MS.gene40322:intron | 30.0% | |
| CAAACATGTCATTCAATAGT+TGG | + | chr3.4:94950855-94950874 | None:intergenic | 30.0% | |
| CATGATTCAAATCATAAGCA+GGG | + | chr3.4:94952388-94952407 | None:intergenic | 30.0% | |
| CTAATATTGCTGTATATCGT+TGG | - | chr3.4:94951408-94951427 | MS.gene40322:intron | 30.0% | |
| CTGTTGAACAAAAATAGATG+TGG | + | chr3.4:94952127-94952146 | None:intergenic | 30.0% | |
| GAAATATATATCCATGCTGT+AGG | + | chr3.4:94953703-94953722 | None:intergenic | 30.0% | |
| GATTGAATTTCAAAGCGATA+CGG | - | chr3.4:94949909-94949928 | MS.gene40322:intron | 30.0% | |
| GTCATTGAAAATGCATGTTA+AGG | - | chr3.4:94950663-94950682 | MS.gene40322:intron | 30.0% | |
| TAAGGAATGATAGATCGATA+AGG | - | chr3.4:94950681-94950700 | MS.gene40322:CDS | 30.0% | |
| TATTTCTCCTGCAATTGAAT+AGG | - | chr3.4:94953028-94953047 | MS.gene40322:intron | 30.0% | |
| TGATAAAGAACTGTACAGAA+AGG | + | chr3.4:94952877-94952896 | None:intergenic | 30.0% | |
| TGTGTCTGTGTTTGAAAAAT+AGG | - | chr3.4:94950105-94950124 | MS.gene40322:intron | 30.0% | |
| TTCAAGAGATTAGAAATGGT+TGG | + | chr3.4:94951994-94952013 | None:intergenic | 30.0% | |
| TTGGAATGTTTACTTTCACA+GGG | - | chr3.4:94953086-94953105 | MS.gene40322:intron | 30.0% | |
| ! | AAGGAGTATATTCCAATTGT+TGG | - | chr3.4:94950976-94950995 | MS.gene40322:intron | 30.0% |
| ! | AGAATCTTTTGCAATTCCTT+TGG | - | chr3.4:94952846-94952865 | MS.gene40322:intron | 30.0% |
| ! | AGGAGTATATTCCAATTGTT+GGG | - | chr3.4:94950977-94950996 | MS.gene40322:intron | 30.0% |
| ! | GTAAAGCATCAAAAAGTTGT+TGG | + | chr3.4:94952803-94952822 | None:intergenic | 30.0% |
| ! | GTATTGATCATGATGCATAT+TGG | + | chr3.4:94951660-94951679 | None:intergenic | 30.0% |
| ! | TCAAAAACACATGTTACTTG+TGG | + | chr3.4:94952474-94952493 | None:intergenic | 30.0% |
| ! | TCATACAAAGGTTTTCAACT+TGG | - | chr3.4:94951499-94951518 | MS.gene40322:intron | 30.0% |
| !! | TGACTTGTGAGTTTTACTAA+TGG | - | chr3.4:94950768-94950787 | MS.gene40322:intron | 30.0% |
| !! | TTCTGTTCTGCATTGTTTTT+AGG | - | chr3.4:94950944-94950963 | MS.gene40322:intron | 30.0% |
| !! | TTGAGTGCTAAGCTTATTTT+TGG | - | chr3.4:94951018-94951037 | MS.gene40322:intron | 30.0% |
| !!! | CACATCTATTTTTGTTCAAC+AGG | - | chr3.4:94952125-94952144 | MS.gene40322:intron | 30.0% |
| !!! | CATGCATTTTTTTATTGTGC+AGG | - | chr3.4:94953778-94953797 | MS.gene40322:intron | 30.0% |
| AAAGAAATTGGACAACAGCA+TGG | + | chr3.4:94953288-94953307 | None:intergenic | 35.0% | |
| AAGAAAACAAACATACACCG+AGG | + | chr3.4:94949700-94949719 | None:intergenic | 35.0% | |
| AAGATCAAGGCAAACAAACA+CGG | + | chr3.4:94951439-94951458 | None:intergenic | 35.0% | |
| AATGCATGTCTTGAGTTATG+TGG | + | chr3.4:94953766-94953785 | None:intergenic | 35.0% | |
| AGGGCTATGTTCAAAAAAGT+GGG | + | chr3.4:94951245-94951264 | None:intergenic | 35.0% | |
| ATAATGCGCTGAAAAGATCA+AGG | + | chr3.4:94951452-94951471 | None:intergenic | 35.0% | |
| ATCTGTAGTGATTAGTGATC+TGG | - | chr3.4:94952329-94952348 | MS.gene40322:intron | 35.0% | |
| ATGGTACTCTTTAGTCAAGA+TGG | + | chr3.4:94953131-94953150 | None:intergenic | 35.0% | |
| ATTGTACAAATCCCTGAAAG+AGG | + | chr3.4:94952730-94952749 | None:intergenic | 35.0% | |
| CATATATACCTGACATCTGA+TGG | - | chr3.4:94953148-94953167 | MS.gene40322:intron | 35.0% | |
| CATCAGATGTCAGGTATATA+TGG | + | chr3.4:94953150-94953169 | None:intergenic | 35.0% | |
| TGAAATGCTTACAATGCTCA+AGG | + | chr3.4:94952277-94952296 | None:intergenic | 35.0% | |
| TTATGCAGTATAGGTCTGTT+TGG | + | chr3.4:94950624-94950643 | None:intergenic | 35.0% | |
| TTATGTCCACACACAAGTTA+TGG | + | chr3.4:94951941-94951960 | None:intergenic | 35.0% | |
| TTCAATTAGTTCAGACGAGT+AGG | - | chr3.4:94953196-94953215 | MS.gene40322:intron | 35.0% | |
| TTTCTTTGACAGTGCTTATC+AGG | - | chr3.4:94951878-94951897 | MS.gene40322:intron | 35.0% | |
| ! | CATGGATTATCCCAAGAAAT+GGG | + | chr3.4:94952028-94952047 | None:intergenic | 35.0% |
| ! | GGTAGAAGTATATTCTTGTG+TGG | + | chr3.4:94952062-94952081 | None:intergenic | 35.0% |
| ! | TGATAAGCACTGTCAAAGAA+AGG | + | chr3.4:94951879-94951898 | None:intergenic | 35.0% |
| ! | TTTCTACCATAACTTGTGTG+TGG | - | chr3.4:94951932-94951951 | MS.gene40322:CDS | 35.0% |
| !! | GGGAGCATTTATTGTAGAAA+AGG | + | chr3.4:94952514-94952533 | None:intergenic | 35.0% |
| !!! | GCATTTTTTTATTGTGCAGG+AGG | - | chr3.4:94953781-94953800 | MS.gene40322:intron | 35.0% |
| !!! | TTTTTTTTGGTGGTGAACCT+CGG | + | chr3.4:94951182-94951201 | None:intergenic | 35.0% |
| AACAAACATACACCGAGGAT+AGG | + | chr3.4:94949695-94949714 | None:intergenic | 40.0% | |
| AAGAAGTCCTGTAAGGAACA+AGG | + | chr3.4:94951724-94951743 | None:intergenic | 40.0% | |
| AAGCCCAATTAAGCTCAACT+TGG | - | chr3.4:94950153-94950172 | MS.gene40322:intron | 40.0% | |
| AAGTGGGCAAAAGAACAGTT+AGG | + | chr3.4:94951229-94951248 | None:intergenic | 40.0% | |
| AAGTTGAGCTTAATTGGGCT+TGG | + | chr3.4:94950154-94950173 | None:intergenic | 40.0% | |
| AATAGGAGGACTTGAGTACA+TGG | + | chr3.4:94952601-94952620 | None:intergenic | 40.0% | |
| AATCCTTGAAAGATTCTCGC+AGG | + | chr3.4:94952975-94952994 | None:intergenic | 40.0% | |
| ACAATGGATGCACCATGAAT+AGG | + | chr3.4:94952618-94952637 | None:intergenic | 40.0% | |
| AGCAAAACAACAGATCCAGA+TGG | + | chr3.4:94951765-94951784 | None:intergenic | 40.0% | |
| AGCCCAATTAAGCTCAACTT+GGG | - | chr3.4:94950154-94950173 | MS.gene40322:intron | 40.0% | |
| AGTTGCAATGTGCAACATGT+TGG | - | chr3.4:94953326-94953345 | MS.gene40322:CDS | 40.0% | |
| ATAATGTGACTCCAATCACC+TGG | + | chr3.4:94953058-94953077 | None:intergenic | 40.0% | |
| ATACTTGCCAACACCTACTT+GGG | - | chr3.4:94951472-94951491 | MS.gene40322:intron | 40.0% | |
| ATAGGAGGACTTGAGTACAT+GGG | + | chr3.4:94952600-94952619 | None:intergenic | 40.0% | |
| ATTAAGCTCAACTTGGGTGT+TGG | - | chr3.4:94950160-94950179 | MS.gene40322:intron | 40.0% | |
| CAAAACAACAGATCCAGATG+GGG | + | chr3.4:94951763-94951782 | None:intergenic | 40.0% | |
| CAAATCACATGTGTCAGTGT+TGG | - | chr3.4:94950330-94950349 | MS.gene40322:CDS | 40.0% | |
| CAATATACTTCTGCTTCCCT+TGG | - | chr3.4:94952668-94952687 | MS.gene40322:CDS | 40.0% | |
| CAGAGTTATGCGAAGAACAT+GGG | - | chr3.4:94952228-94952247 | MS.gene40322:intron | 40.0% | |
| CAGGGCTATGTTCAAAAAAG+TGG | + | chr3.4:94951246-94951265 | None:intergenic | 40.0% | |
| CATAATTTATGCAAGGTCCG+AGG | - | chr3.4:94951162-94951181 | MS.gene40322:intron | 40.0% | |
| CATGTTCTTCGCATAACTCT+GGG | + | chr3.4:94952229-94952248 | None:intergenic | 40.0% | |
| CCATTTCTTGGGATAATCCA+TGG | - | chr3.4:94952026-94952045 | MS.gene40322:intron | 40.0% | |
| CTTGAAGCTTCCCATTTCTT+GGG | - | chr3.4:94952015-94952034 | MS.gene40322:intron | 40.0% | |
| GCAAAACAACAGATCCAGAT+GGG | + | chr3.4:94951764-94951783 | None:intergenic | 40.0% | |
| GCCAACTGAAACTTGTGATT+AGG | - | chr3.4:94952574-94952593 | MS.gene40322:intron | 40.0% | |
| GCCTAATCACAAGTTTCAGT+TGG | + | chr3.4:94952578-94952597 | None:intergenic | 40.0% | |
| GTTCCAGTTAAGTGTGAACA+TGG | - | chr3.4:94953245-94953264 | MS.gene40322:intron | 40.0% | |
| GTTGCAATGTGCAACATGTT+GGG | - | chr3.4:94953327-94953346 | MS.gene40322:CDS | 40.0% | |
| GTTTATCTCTACCTACAGCA+TGG | - | chr3.4:94953689-94953708 | MS.gene40322:intron | 40.0% | |
| TACTCAAGTCCTCCTATTCA+TGG | - | chr3.4:94952603-94952622 | MS.gene40322:intron | 40.0% | |
| TACTTGGGGCAATCATACAA+AGG | - | chr3.4:94951487-94951506 | MS.gene40322:intron | 40.0% | |
| TATACTTGCCAACACCTACT+TGG | - | chr3.4:94951471-94951490 | MS.gene40322:intron | 40.0% | |
| TATGAGAGATGATGCTGTCT+CGG | - | chr3.4:94953638-94953657 | MS.gene40322:intron | 40.0% | |
| TATTCATGGTGCATCCATTG+TGG | - | chr3.4:94952617-94952636 | MS.gene40322:intron | 40.0% | |
| TCAGCAACAAACAAACGAAC+AGG | + | chr3.4:94952186-94952205 | None:intergenic | 40.0% | |
| TCAGGGATTTGTACAATGAC+TGG | - | chr3.4:94952733-94952752 | MS.gene40322:intron | 40.0% | |
| TCTTGAAGCTTCCCATTTCT+TGG | - | chr3.4:94952014-94952033 | MS.gene40322:intron | 40.0% | |
| TGATCCAACGCTTGAACAAT+GGG | - | chr3.4:94951815-94951834 | MS.gene40322:intron | 40.0% | |
| TGCAATTGAATAGGTACACC+AGG | - | chr3.4:94953037-94953056 | MS.gene40322:intron | 40.0% | |
| TGGTGTACCTATTCAATTGC+AGG | + | chr3.4:94953038-94953057 | None:intergenic | 40.0% | |
| TGTGTGGACATTATTCACCA+TGG | + | chr3.4:94952046-94952065 | None:intergenic | 40.0% | |
| TTCTACAATAAATGCTCCCC+AGG | - | chr3.4:94952515-94952534 | MS.gene40322:intron | 40.0% | |
| TTGATCCAACGCTTGAACAA+TGG | - | chr3.4:94951814-94951833 | MS.gene40322:intron | 40.0% | |
| TTGCAATGTGCAACATGTTG+GGG | - | chr3.4:94953328-94953347 | MS.gene40322:CDS | 40.0% | |
| TTTGATGCTTTACGTGCTAG+AGG | - | chr3.4:94952810-94952829 | MS.gene40322:intron | 40.0% | |
| TTTGTATGATTGCCCCAAGT+AGG | + | chr3.4:94951488-94951507 | None:intergenic | 40.0% | |
| ! | ACAAAGGTTTTCAACTTGGC+AGG | - | chr3.4:94951503-94951522 | MS.gene40322:intron | 40.0% |
| ! | ACACCCAAGTTGAGCTTAAT+TGG | + | chr3.4:94950160-94950179 | None:intergenic | 40.0% |
| ! | CACCCAAGTTGAGCTTAATT+GGG | + | chr3.4:94950159-94950178 | None:intergenic | 40.0% |
| ! | CCATGGATTATCCCAAGAAA+TGG | + | chr3.4:94952029-94952048 | None:intergenic | 40.0% |
| ! | GTTCGTTTGTTTGTTGCTGA+TGG | - | chr3.4:94952186-94952205 | MS.gene40322:CDS | 40.0% |
| !! | GACTATTGAGTTGAAGGCAA+TGG | - | chr3.4:94952755-94952774 | MS.gene40322:intron | 40.0% |
| !! | TGACTGGACTATTGAGTTGA+AGG | - | chr3.4:94952749-94952768 | MS.gene40322:intron | 40.0% |
| !!! | ACTTGTTTTGCTCCTCTTTC+AGG | - | chr3.4:94952715-94952734 | MS.gene40322:intron | 40.0% |
| !!! | AGCTTATTTTTGGTGCAGAC+AGG | - | chr3.4:94951028-94951047 | MS.gene40322:intron | 40.0% |
| !!! | CTTGTTTTGCTCCTCTTTCA+GGG | - | chr3.4:94952716-94952735 | MS.gene40322:intron | 40.0% |
| !!! | TGTTTTTAGGTCACGCAACA+AGG | - | chr3.4:94950957-94950976 | MS.gene40322:intron | 40.0% |
| AAATCAGCGAGCCCAACAAT+TGG | + | chr3.4:94950991-94951010 | None:intergenic | 45.0% | |
| AACAGGGTTACCACTGTTCA+AGG | - | chr3.4:94951277-94951296 | MS.gene40322:CDS | 45.0% | |
| AAGTCCTGTAAGGAACAAGG+AGG | + | chr3.4:94951721-94951740 | None:intergenic | 45.0% | |
| AATGGCCTGTGATACTTACC+AGG | - | chr3.4:94950786-94950805 | MS.gene40322:intron | 45.0% | |
| ACAGGACTTCTTGAGGATCT+TGG | - | chr3.4:94951732-94951751 | MS.gene40322:CDS | 45.0% | |
| ACCACTGTTCAAGGCTTATC+TGG | - | chr3.4:94951286-94951305 | MS.gene40322:CDS | 45.0% | |
| ACCAGATAAGCCTTGAACAG+TGG | + | chr3.4:94951290-94951309 | None:intergenic | 45.0% | |
| ACCCTGTTCTCTTGAATAGC+AGG | + | chr3.4:94951265-94951284 | None:intergenic | 45.0% | |
| ACCTTCCTGGTAAGTATCAC+AGG | + | chr3.4:94950794-94950813 | None:intergenic | 45.0% | |
| AGTCCTGTAAGGAACAAGGA+GGG | + | chr3.4:94951720-94951739 | None:intergenic | 45.0% | |
| ATAACTGAGCTAAGCTCACG+GGG | + | chr3.4:94951141-94951160 | None:intergenic | 45.0% | |
| ATATGTCCAAGTCCAGCCAA+GGG | + | chr3.4:94952687-94952706 | None:intergenic | 45.0% | |
| ATCTGCATCTAGACTTCCAC+TGG | + | chr3.4:94952157-94952176 | None:intergenic | 45.0% | |
| ATGCTTTACGTGCTAGAGGT+TGG | - | chr3.4:94952814-94952833 | MS.gene40322:intron | 45.0% | |
| ATGGATGCACCATGAATAGG+AGG | + | chr3.4:94952615-94952634 | None:intergenic | 45.0% | |
| CATAACTGAGCTAAGCTCAC+GGG | + | chr3.4:94951142-94951161 | None:intergenic | 45.0% | |
| CCAGAGTTATGCGAAGAACA+TGG | - | chr3.4:94952227-94952246 | MS.gene40322:intron | 45.0% | |
| CCATGTTCTTCGCATAACTC+TGG | + | chr3.4:94952230-94952249 | None:intergenic | 45.0% | |
| CCCTGCTATTCAAGAGAACA+GGG | - | chr3.4:94951261-94951280 | MS.gene40322:CDS | 45.0% | |
| CCCTGTTCTCTTGAATAGCA+GGG | + | chr3.4:94951264-94951283 | None:intergenic | 45.0% | |
| CCTCACAACATCCAACACAA+GGG | + | chr3.4:94950821-94950840 | None:intergenic | 45.0% | |
| CTCACAACATCCAACACAAG+GGG | + | chr3.4:94950820-94950839 | None:intergenic | 45.0% | |
| GAAGACGGAATCAGAAGAAG+CGG | + | chr3.4:94949645-94949664 | None:intergenic | 45.0% | |
| GAATAGGTACACCAGGTGAT+TGG | - | chr3.4:94953044-94953063 | MS.gene40322:intron | 45.0% | |
| GATCCTCAAGAAGTCCTGTA+AGG | + | chr3.4:94951731-94951750 | None:intergenic | 45.0% | |
| GCACCATGTTCACACTTAAC+TGG | + | chr3.4:94953251-94953270 | None:intergenic | 45.0% | |
| GCATAACTGAGCTAAGCTCA+CGG | + | chr3.4:94951143-94951162 | None:intergenic | 45.0% | |
| GCGAAGAACATGGGTCTTTA+TGG | - | chr3.4:94952237-94952256 | MS.gene40322:intron | 45.0% | |
| GGTCTTTATGGTGAACGTGT+TGG | - | chr3.4:94952249-94952268 | MS.gene40322:intron | 45.0% | |
| GTACAGAAAGGACAAGCCAA+AGG | + | chr3.4:94952865-94952884 | None:intergenic | 45.0% | |
| GTATTGCATCAGCCAGATGT+GGG | + | chr3.4:94953839-94953858 | None:intergenic | 45.0% | |
| GTTCAAGGCTTATCTGGTAC+TGG | - | chr3.4:94951292-94951311 | MS.gene40322:CDS | 45.0% | |
| GTTCCTTACAGGACTTCTTG+AGG | - | chr3.4:94951725-94951744 | MS.gene40322:CDS | 45.0% | |
| TACTTGCCAACACCTACTTG+GGG | - | chr3.4:94951473-94951492 | MS.gene40322:intron | 45.0% | |
| TCACTACCTGTCCTTGAGAA+TGG | + | chr3.4:94952646-94952665 | None:intergenic | 45.0% | |
| TCTCCTGCGAGAATCTTTCA+AGG | - | chr3.4:94952969-94952988 | MS.gene40322:intron | 45.0% | |
| TGCAATGTGCAACATGTTGG+GGG | - | chr3.4:94953329-94953348 | MS.gene40322:CDS | 45.0% | |
| TGTATTGCATCAGCCAGATG+TGG | + | chr3.4:94953840-94953859 | None:intergenic | 45.0% | |
| TGTCTTACCCATCAGATGTC+AGG | + | chr3.4:94953159-94953178 | None:intergenic | 45.0% | |
| ! | ATTGTGCAGGAGGATTAGCA+TGG | - | chr3.4:94953791-94953810 | MS.gene40322:intron | 45.0% |
| ! | CGTTTGTTTGTTGCTGATGG+TGG | - | chr3.4:94952189-94952208 | MS.gene40322:CDS | 45.0% |
| ! | GGTAACTGTCGCTTACAACA+AGG | - | chr3.4:94950126-94950145 | MS.gene40322:intron | 45.0% |
| ! | GTCAAGATGGAAACTTGCTC+AGG | + | chr3.4:94953118-94953137 | None:intergenic | 45.0% |
| !! | GTACTGGTTCGCTAAGAGTT+GGG | - | chr3.4:94951308-94951327 | MS.gene40322:CDS | 45.0% |
| !! | TACTGGTTCGCTAAGAGTTG+GGG | - | chr3.4:94951309-94951328 | MS.gene40322:CDS | 45.0% |
| !! | ATTAGTTAAAAAAATATAAA+GGG | + | chr3.4:94951393-94951412 | None:intergenic | 5.0% |
| !! | TATTAGTTAAAAAAATATAA+AGG | + | chr3.4:94951394-94951413 | None:intergenic | 5.0% |
| !!! | AAGAATTTTTTTTTTTTTTT+TGG | + | chr3.4:94951195-94951214 | None:intergenic | 5.0% |
| ACACAAGGGGTTTACCTTCC+TGG | + | chr3.4:94950807-94950826 | None:intergenic | 50.0% | |
| ACACCGAGGATAGGATCTTC+AGG | + | chr3.4:94949686-94949705 | None:intergenic | 50.0% | |
| ACACGAGGGCTTGACTTTCA+AGG | - | chr3.4:94951563-94951582 | MS.gene40322:intron | 50.0% | |
| ACGAACGAGATGAGCGAAGA+CGG | + | chr3.4:94949660-94949679 | None:intergenic | 50.0% | |
| ACGGAATCAGAAGAAGCGGT+TGG | + | chr3.4:94949641-94949660 | None:intergenic | 50.0% | |
| ACTATGCTCCAGCAACACGA+GGG | - | chr3.4:94951549-94951568 | MS.gene40322:intron | 50.0% | |
| AGTCAGCGGATGTTTCAAGC+AGG | - | chr3.4:94952544-94952563 | MS.gene40322:intron | 50.0% | |
| ATACTTCTGCTTCCCTTGGC+TGG | - | chr3.4:94952672-94952691 | MS.gene40322:intron | 50.0% | |
| CAGCATGGTACGCAAGCTAT+AGG | + | chr3.4:94953273-94953292 | None:intergenic | 50.0% | |
| CATATGTCCAAGTCCAGCCA+AGG | + | chr3.4:94952688-94952707 | None:intergenic | 50.0% | |
| CCCTTGTGTTGGATGTTGTG+AGG | - | chr3.4:94950818-94950837 | MS.gene40322:intron | 50.0% | |
| CTACCTGTCCTTGAGAATGG+CGG | + | chr3.4:94952643-94952662 | None:intergenic | 50.0% | |
| CTCCAAAACAGTCCCACATC+TGG | - | chr3.4:94953824-94953843 | MS.gene40322:CDS | 50.0% | |
| GCATGTGCACATAACCCTAC+TGG | - | chr3.4:94951789-94951808 | MS.gene40322:intron | 50.0% | |
| GCCCTGCTATTCAAGAGAAC+AGG | - | chr3.4:94951260-94951279 | MS.gene40322:CDS | 50.0% | |
| GCCTCACAACATCCAACACA+AGG | + | chr3.4:94950822-94950841 | None:intergenic | 50.0% | |
| GCCTGTGATACTTACCAGGA+AGG | - | chr3.4:94950790-94950809 | MS.gene40322:intron | 50.0% | |
| GCGTTGGATCAACACCAGTA+GGG | + | chr3.4:94951806-94951825 | None:intergenic | 50.0% | |
| GCTCCTGAAGATCCTATCCT+CGG | - | chr3.4:94949680-94949699 | MS.gene40322:intron | 50.0% | |
| GGAAGGTAAACCCCTTGTGT+TGG | - | chr3.4:94950807-94950826 | MS.gene40322:intron | 50.0% | |
| GTCAGCGGATGTTTCAAGCA+GGG | - | chr3.4:94952545-94952564 | MS.gene40322:intron | 50.0% | |
| GTCCTGTAAGGAACAAGGAG+GGG | + | chr3.4:94951719-94951738 | None:intergenic | 50.0% | |
| TACTATGCTCCAGCAACACG+AGG | - | chr3.4:94951548-94951567 | MS.gene40322:intron | 50.0% | |
| TCAGAAGAAGCGGTTGGAGA+AGG | + | chr3.4:94949635-94949654 | None:intergenic | 50.0% | |
| TCCTGTAAGGAACAAGGAGG+GGG | + | chr3.4:94951718-94951737 | None:intergenic | 50.0% | |
| TGATTGCCCCAAGTAGGTGT+TGG | + | chr3.4:94951482-94951501 | None:intergenic | 50.0% | |
| TGCTCCCATTGTTCAAGCGT+TGG | + | chr3.4:94951822-94951841 | None:intergenic | 50.0% | |
| ! | AGCCAGATGTGGGACTGTTT+TGG | + | chr3.4:94953829-94953848 | None:intergenic | 50.0% |
| ! | AGCGTTGGATCAACACCAGT+AGG | + | chr3.4:94951807-94951826 | None:intergenic | 50.0% |
| ! | CGATACGGTTCTGATGCTGA+TGG | - | chr3.4:94949924-94949943 | MS.gene40322:intron | 50.0% |
| ! | GTTCAACAGGGTTTTGCCAG+TGG | - | chr3.4:94952138-94952157 | MS.gene40322:CDS | 50.0% |
| ! | TGTTGGTGCTTACCGAACTG+AGG | - | chr3.4:94950177-94950196 | MS.gene40322:intron | 50.0% |
| !! | ACTGGTTCGCTAAGAGTTGG+GGG | - | chr3.4:94951310-94951329 | MS.gene40322:CDS | 50.0% |
| !! | GGTACTGGTTCGCTAAGAGT+TGG | - | chr3.4:94951307-94951326 | MS.gene40322:CDS | 50.0% |
| !! | TGCTGATGGTGGAGAATTGC+TGG | - | chr3.4:94952200-94952219 | MS.gene40322:CDS | 50.0% |
| AAGTCAAGCCCTCGTGTTGC+TGG | + | chr3.4:94951560-94951579 | None:intergenic | 55.0% | |
| CATTGTGGCCGCCATTCTCA+AGG | - | chr3.4:94952632-94952651 | MS.gene40322:CDS | 55.0% | |
| CTTGAGAATGGCGGCCACAA+TGG | + | chr3.4:94952634-94952653 | None:intergenic | 55.0% | |
| TCCCCCTCCTTGTTCCTTAC+AGG | - | chr3.4:94951714-94951733 | MS.gene40322:CDS | 55.0% | |
| ! | TGCAGGAGGATTAGCATGGC+TGG | - | chr3.4:94953795-94953814 | MS.gene40322:CDS | 55.0% |
| !! | ATCCGCTGACTTGCTGACCT+GGG | + | chr3.4:94952535-94952554 | None:intergenic | 55.0% |
| !! | GATCTTGGTTCTGCCCCATC+TGG | - | chr3.4:94951747-94951766 | MS.gene40322:intron | 55.0% |
| CTGCTTCCCTTGGCTGGACT+TGG | - | chr3.4:94952678-94952697 | MS.gene40322:intron | 60.0% | |
| TCCCCAGGTCAGCAAGTCAG+CGG | - | chr3.4:94952530-94952549 | MS.gene40322:intron | 60.0% | |
| TGGCCGCCATTCTCAAGGAC+AGG | - | chr3.4:94952637-94952656 | MS.gene40322:CDS | 60.0% | |
| !! | CATCCGCTGACTTGCTGACC+TGG | + | chr3.4:94952536-94952555 | None:intergenic | 60.0% |
| !! | TCCGCTGACTTGCTGACCTG+GGG | + | chr3.4:94952534-94952553 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 94949611 | 94953884 | 94949611 | ID=MS.gene40322 |
| chr3.4 | mRNA | 94949611 | 94953884 | 94949611 | ID=MS.gene40322.t1;Parent=MS.gene40322 |
| chr3.4 | exon | 94953792 | 94953884 | 94953792 | ID=MS.gene40322.t1.exon1;Parent=MS.gene40322.t1 |
| chr3.4 | CDS | 94953792 | 94953884 | 94953792 | ID=cds.MS.gene40322.t1;Parent=MS.gene40322.t1 |
| chr3.4 | exon | 94953297 | 94953368 | 94953297 | ID=MS.gene40322.t1.exon2;Parent=MS.gene40322.t1 |
| chr3.4 | CDS | 94953297 | 94953368 | 94953297 | ID=cds.MS.gene40322.t1;Parent=MS.gene40322.t1 |
| chr3.4 | exon | 94952626 | 94952687 | 94952626 | ID=MS.gene40322.t1.exon3;Parent=MS.gene40322.t1 |
| chr3.4 | CDS | 94952626 | 94952687 | 94952626 | ID=cds.MS.gene40322.t1;Parent=MS.gene40322.t1 |
| chr3.4 | exon | 94952446 | 94952529 | 94952446 | ID=MS.gene40322.t1.exon4;Parent=MS.gene40322.t1 |
| chr3.4 | CDS | 94952446 | 94952529 | 94952446 | ID=cds.MS.gene40322.t1;Parent=MS.gene40322.t1 |
| chr3.4 | exon | 94952135 | 94952234 | 94952135 | ID=MS.gene40322.t1.exon5;Parent=MS.gene40322.t1 |
| chr3.4 | CDS | 94952135 | 94952234 | 94952135 | ID=cds.MS.gene40322.t1;Parent=MS.gene40322.t1 |
| chr3.4 | exon | 94951911 | 94952031 | 94951911 | ID=MS.gene40322.t1.exon6;Parent=MS.gene40322.t1 |
| chr3.4 | CDS | 94951911 | 94952031 | 94951911 | ID=cds.MS.gene40322.t1;Parent=MS.gene40322.t1 |
| chr3.4 | exon | 94951596 | 94951759 | 94951596 | ID=MS.gene40322.t1.exon7;Parent=MS.gene40322.t1 |
| chr3.4 | CDS | 94951596 | 94951759 | 94951596 | ID=cds.MS.gene40322.t1;Parent=MS.gene40322.t1 |
| chr3.4 | exon | 94951211 | 94951348 | 94951211 | ID=MS.gene40322.t1.exon8;Parent=MS.gene40322.t1 |
| chr3.4 | CDS | 94951211 | 94951348 | 94951211 | ID=cds.MS.gene40322.t1;Parent=MS.gene40322.t1 |
| chr3.4 | exon | 94950837 | 94950958 | 94950837 | ID=MS.gene40322.t1.exon9;Parent=MS.gene40322.t1 |
| chr3.4 | CDS | 94950837 | 94950958 | 94950837 | ID=cds.MS.gene40322.t1;Parent=MS.gene40322.t1 |
| chr3.4 | exon | 94950664 | 94950758 | 94950664 | ID=MS.gene40322.t1.exon10;Parent=MS.gene40322.t1 |
| chr3.4 | CDS | 94950664 | 94950758 | 94950664 | ID=cds.MS.gene40322.t1;Parent=MS.gene40322.t1 |
| chr3.4 | exon | 94950325 | 94950445 | 94950325 | ID=MS.gene40322.t1.exon11;Parent=MS.gene40322.t1 |
| chr3.4 | CDS | 94950325 | 94950445 | 94950325 | ID=cds.MS.gene40322.t1;Parent=MS.gene40322.t1 |
| chr3.4 | exon | 94949611 | 94949695 | 94949611 | ID=MS.gene40322.t1.exon12;Parent=MS.gene40322.t1 |
| chr3.4 | CDS | 94949611 | 94949695 | 94949611 | ID=cds.MS.gene40322.t1;Parent=MS.gene40322.t1 |
| Gene Sequence |
| Protein sequence |
