Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40650.t1 | XP_013456336.1 | 95 | 262 | 13 | 0 | 1 | 262 | 1 | 262 | 4.70E-131 | 477.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40650.t1 | A0A072UL21 | 95.0 | 262 | 13 | 0 | 1 | 262 | 1 | 262 | 3.4e-131 | 477.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050315 | MS.gene40650 | 0.807022 | 6.19E-50 | -1.69E-46 |
| MS.gene050507 | MS.gene40650 | 0.803152 | 4.00E-49 | -1.69E-46 |
| MS.gene05081 | MS.gene40650 | 0.80744 | 5.05E-50 | -1.69E-46 |
| MS.gene051171 | MS.gene40650 | 0.844208 | 8.71E-59 | -1.69E-46 |
| MS.gene051242 | MS.gene40650 | 0.842758 | 2.13E-58 | -1.69E-46 |
| MS.gene051244 | MS.gene40650 | 0.8701 | 1.88E-66 | -1.69E-46 |
| MS.gene051552 | MS.gene40650 | -0.813429 | 2.57E-51 | -1.69E-46 |
| MS.gene051838 | MS.gene40650 | 0.807443 | 5.04E-50 | -1.69E-46 |
| MS.gene052134 | MS.gene40650 | 0.806037 | 9.99E-50 | -1.69E-46 |
| MS.gene052469 | MS.gene40650 | 0.814918 | 1.21E-51 | -1.69E-46 |
| MS.gene053330 | MS.gene40650 | 0.887168 | 1.81E-72 | -1.69E-46 |
| MS.gene053971 | MS.gene40650 | 0.823805 | 1.14E-53 | -1.69E-46 |
| MS.gene054343 | MS.gene40650 | 0.838045 | 3.63E-57 | -1.69E-46 |
| MS.gene054344 | MS.gene40650 | 0.803542 | 3.32E-49 | -1.69E-46 |
| MS.gene054884 | MS.gene40650 | -0.856338 | 3.44E-62 | -1.69E-46 |
| MS.gene055370 | MS.gene40650 | 0.864362 | 1.28E-64 | -1.69E-46 |
| MS.gene055539 | MS.gene40650 | 0.803143 | 4.01E-49 | -1.69E-46 |
| MS.gene056305 | MS.gene40650 | 0.800157 | 1.64E-48 | -1.69E-46 |
| MS.gene056351 | MS.gene40650 | 0.815771 | 7.79E-52 | -1.69E-46 |
| MS.gene056633 | MS.gene40650 | 0.960928 | 4.09E-119 | -1.69E-46 |
| MS.gene056664 | MS.gene40650 | 0.882924 | 6.92E-71 | -1.69E-46 |
| MS.gene056678 | MS.gene40650 | -0.813605 | 2.35E-51 | -1.69E-46 |
| MS.gene057196 | MS.gene40650 | 0.865442 | 5.89E-65 | -1.69E-46 |
| MS.gene057332 | MS.gene40650 | 0.861647 | 8.86E-64 | -1.69E-46 |
| MS.gene057658 | MS.gene40650 | 0.842322 | 2.78E-58 | -1.69E-46 |
| MS.gene058076 | MS.gene40650 | -0.818516 | 1.88E-52 | -1.69E-46 |
| MS.gene058158 | MS.gene40650 | -0.808079 | 3.69E-50 | -1.69E-46 |
| MS.gene058233 | MS.gene40650 | 0.829101 | 6.21E-55 | -1.69E-46 |
| MS.gene058276 | MS.gene40650 | 0.806684 | 7.30E-50 | -1.69E-46 |
| MS.gene058418 | MS.gene40650 | -0.804126 | 2.51E-49 | -1.69E-46 |
| MS.gene058746 | MS.gene40650 | 0.928518 | 2.58E-92 | -1.69E-46 |
| MS.gene058838 | MS.gene40650 | 0.816701 | 4.83E-52 | -1.69E-46 |
| MS.gene059023 | MS.gene40650 | 0.803882 | 2.82E-49 | -1.69E-46 |
| MS.gene05914 | MS.gene40650 | 0.871602 | 6.03E-67 | -1.69E-46 |
| MS.gene059512 | MS.gene40650 | 0.880187 | 6.75E-70 | -1.69E-46 |
| MS.gene060087 | MS.gene40650 | -0.818187 | 2.23E-52 | -1.69E-46 |
| MS.gene061231 | MS.gene40650 | 0.855244 | 7.18E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40650.t1 | MTR_4g068770 | 98.092 | 262 | 5 | 0 | 1 | 262 | 1 | 262 | 0.0 | 528 |
| MS.gene40650.t1 | MTR_5g025750 | 47.701 | 174 | 75 | 4 | 77 | 245 | 88 | 250 | 3.68e-48 | 160 |
| MS.gene40650.t1 | MTR_3g032820 | 66.038 | 106 | 10 | 1 | 114 | 193 | 33 | 138 | 1.00e-38 | 132 |
| MS.gene40650.t1 | MTR_4g082590 | 37.079 | 178 | 104 | 2 | 84 | 261 | 123 | 292 | 1.54e-37 | 134 |
| MS.gene40650.t1 | MTR_3g032210 | 81.967 | 61 | 8 | 1 | 113 | 173 | 92 | 149 | 1.07e-27 | 105 |
| MS.gene40650.t1 | MTR_3g032770 | 82.759 | 58 | 8 | 1 | 113 | 168 | 7 | 64 | 5.53e-26 | 98.6 |
| MS.gene40650.t1 | MTR_3g032170 | 61.176 | 85 | 20 | 3 | 109 | 192 | 17 | 89 | 1.26e-24 | 94.7 |
| MS.gene40650.t1 | MTR_3g032217 | 84.091 | 44 | 7 | 0 | 137 | 180 | 1 | 44 | 5.15e-19 | 78.6 |
| MS.gene40650.t1 | MTR_3g032100 | 58.333 | 60 | 25 | 0 | 144 | 203 | 2 | 61 | 2.57e-16 | 72.0 |
| MS.gene40650.t1 | MTR_3g032390 | 64.286 | 56 | 8 | 2 | 137 | 192 | 1 | 44 | 3.45e-12 | 60.5 |
| MS.gene40650.t1 | MTR_3g032405 | 68.182 | 44 | 5 | 1 | 147 | 190 | 8 | 42 | 1.62e-11 | 58.5 |
| MS.gene40650.t1 | MTR_3g032810 | 87.500 | 32 | 4 | 0 | 217 | 248 | 1 | 32 | 7.83e-11 | 56.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40650.t1 | AT5G13720 | 70.943 | 265 | 70 | 4 | 1 | 262 | 1 | 261 | 8.48e-121 | 345 |
| MS.gene40650.t1 | AT4G19390 | 53.073 | 179 | 78 | 1 | 81 | 259 | 98 | 270 | 2.26e-58 | 187 |
| MS.gene40650.t1 | AT4G19390 | 51.099 | 182 | 83 | 1 | 78 | 259 | 7 | 182 | 4.69e-57 | 181 |
Find 49 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAGAGAGAGGATCCTTTA+AGG | 0.208592 | 4.1:+33653675 | None:intergenic |
| TCTGTCGACCGTGCCCTTAA+AGG | 0.289306 | 4.1:-33653689 | MS.gene40650:CDS |
| CTTAAAGGATCCTCTCTCTT+TGG | 0.305772 | 4.1:-33653674 | MS.gene40650:CDS |
| GCTGCAGATGTTTATCTTGC+TGG | 0.317902 | 4.1:-33653785 | MS.gene40650:intron |
| GTTGTTGAATGCATAGTTAA+AGG | 0.320779 | 4.1:+33655549 | None:intergenic |
| TTGAAGCATACAAAGTCTAT+TGG | 0.342156 | 4.1:-33653937 | MS.gene40650:CDS |
| CTTTGGAATGTTCGCTTTGA+AGG | 0.345818 | 4.1:-33653657 | MS.gene40650:intron |
| GCTGTTGGAGGTTCCTTGGC+TGG | 0.360211 | 4.1:-33654459 | MS.gene40650:CDS |
| GCTTGCTGTTGGAGGTTCCT+TGG | 0.375762 | 4.1:-33654463 | MS.gene40650:CDS |
| GTGAAGAGAATAAGGTGTAG+AGG | 0.384322 | 4.1:+33655696 | None:intergenic |
| AAAGAGAGAGGATCCTTTAA+GGG | 0.401841 | 4.1:+33653676 | None:intergenic |
| ATCAGATGAAGAAGAGCTTA+AGG | 0.404031 | 4.1:+33655624 | None:intergenic |
| CTGCTTCTAGTTGAAGCAAT+TGG | 0.409753 | 4.1:-33653875 | MS.gene40650:intron |
| CGGTTGATGTGAAGAGAATA+AGG | 0.410376 | 4.1:+33655688 | None:intergenic |
| CTAATGGCAACCCACTTGTT+AGG | 0.414680 | 4.1:-33655525 | MS.gene40650:CDS |
| TATGCATTCAACAACACTAA+TGG | 0.422687 | 4.1:-33655541 | MS.gene40650:CDS |
| TTGGCACTGCTTGCTGTTGG+AGG | 0.437122 | 4.1:-33654471 | MS.gene40650:CDS |
| AATGTTTGAGAGGAGCAAAA+TGG | 0.444488 | 4.1:-33653455 | MS.gene40650:CDS |
| CACAACAAAGTGTGCCATCC+AGG | 0.447097 | 4.1:-33655585 | MS.gene40650:CDS |
| GGTTGTCATTGCCACAGGAT+TGG | 0.447202 | 4.1:-33653434 | MS.gene40650:CDS |
| GGCACACTTTGTTGTGATGA+TGG | 0.458728 | 4.1:+33655592 | None:intergenic |
| AAAGGCAGGCTCAGTTGGCC+TGG | 0.464199 | 4.1:+33655567 | None:intergenic |
| TGAAGAGAATAAGGTGTAGA+GGG | 0.468705 | 4.1:+33655697 | None:intergenic |
| GCAGGCTCAGTTGGCCTGGA+TGG | 0.471265 | 4.1:+33655571 | None:intergenic |
| CTTGCTTATGCAGATTATGA+AGG | 0.473431 | 4.1:+33653359 | None:intergenic |
| TAACCAAAATACCCTTTCAA+TGG | 0.475319 | 4.1:+33655480 | None:intergenic |
| TAGTTAAAGGCAGGCTCAGT+TGG | 0.496213 | 4.1:+33655562 | None:intergenic |
| TACCGAGTCTTCCATTGAAA+GGG | 0.509099 | 4.1:-33655491 | MS.gene40650:intron |
| AGGAGTTCACACTGGAAAGA+TGG | 0.517911 | 4.1:-33653900 | MS.gene40650:CDS |
| ATACCGAGTCTTCCATTGAA+AGG | 0.525329 | 4.1:-33655492 | MS.gene40650:CDS |
| TTGAATGCATAGTTAAAGGC+AGG | 0.530005 | 4.1:+33655553 | None:intergenic |
| CGATGAACTGAAAACAAAAG+TGG | 0.531141 | 4.1:-33653509 | MS.gene40650:CDS |
| AAAATGGTTGTCATTGCCAC+AGG | 0.534800 | 4.1:-33653439 | MS.gene40650:CDS |
| TGGCAACCCACTTGTTAGGA+TGG | 0.550227 | 4.1:-33655521 | MS.gene40650:CDS |
| GATGAACTGAAAACAAAAGT+GGG | 0.560414 | 4.1:-33653508 | MS.gene40650:CDS |
| TATTGGACAAGTTGTGTCAA+AGG | 0.561661 | 4.1:-33653920 | MS.gene40650:CDS |
| TACCCTTTCAATGGAAGACT+CGG | 0.563849 | 4.1:+33655489 | None:intergenic |
| GCAGAGGAGTGAGCCAGCCA+AGG | 0.567638 | 4.1:+33654446 | None:intergenic |
| GAGAGGATCCTTTAAGGGCA+CGG | 0.580531 | 4.1:+33653681 | None:intergenic |
| TTAAGGGCACGGTCGACAGA+AGG | 0.584565 | 4.1:+33653692 | None:intergenic |
| ACTATACATTTAGAAAGCAG+AGG | 0.602382 | 4.1:+33654430 | None:intergenic |
| TTTGAACCATCCTAACAAGT+GGG | 0.611814 | 4.1:+33655515 | None:intergenic |
| ACAGAAGGTTGCACATCATG+AGG | 0.628237 | 4.1:+33653707 | None:intergenic |
| AGCGAACATTCCAAAGAGAG+AGG | 0.634453 | 4.1:+33653664 | None:intergenic |
| TGTGTCAAAGGAGTTCACAC+TGG | 0.642348 | 4.1:-33653908 | MS.gene40650:CDS |
| ACTTAGTAAATCCAATCCTG+TGG | 0.659554 | 4.1:+33653423 | None:intergenic |
| ATGAACTGAAAACAAAAGTG+GGG | 0.689995 | 4.1:-33653507 | MS.gene40650:CDS |
| TTTGTAAAAGAAACTCGATG+GGG | 0.717920 | 4.1:+33655652 | None:intergenic |
| GATGGGGAAGATGTGATGAA+CGG | 0.743142 | 4.1:+33655668 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATTGACTTAAATATATT+AGG | - | chr4.1:33653663-33653682 | MS.gene40650:CDS | 10.0% |
| !! | ATATGATAGATTTGATAAAT+TGG | - | chr4.1:33654245-33654264 | MS.gene40650:intron | 15.0% |
| !! | ATTTGAAAAATGTTTAATTG+AGG | - | chr4.1:33654198-33654217 | MS.gene40650:intron | 15.0% |
| !! | CAACATAAACAAATATTATA+GGG | - | chr4.1:33653948-33653967 | MS.gene40650:CDS | 15.0% |
| !! | TCAACATAAACAAATATTAT+AGG | - | chr4.1:33653947-33653966 | MS.gene40650:CDS | 15.0% |
| !! | TCAATACTTATAAACAATAA+TGG | + | chr4.1:33653869-33653888 | None:intergenic | 15.0% |
| !!! | AAAAAGTATAATCATCATTA+AGG | + | chr4.1:33654985-33655004 | None:intergenic | 15.0% |
| !!! | AAAAGTATAATCATCATTAA+GGG | + | chr4.1:33654984-33655003 | None:intergenic | 15.0% |
| !!! | ATATATTCTTGATCATTTTA+GGG | - | chr4.1:33655107-33655126 | MS.gene40650:intron | 15.0% |
| !!! | ATGATTATACTTTTTCTTTA+GGG | - | chr4.1:33654990-33655009 | MS.gene40650:intron | 15.0% |
| !!! | TATATATTCTTGATCATTTT+AGG | - | chr4.1:33655106-33655125 | MS.gene40650:intron | 15.0% |
| !! | AAAAAGCTTACAATTAGAAA+AGG | + | chr4.1:33654555-33654574 | None:intergenic | 20.0% |
| !! | AAAGTATAATCATCATTAAG+GGG | + | chr4.1:33654983-33655002 | None:intergenic | 20.0% |
| !! | ACTTTATATTATTCACTTCA+CGG | - | chr4.1:33654137-33654156 | MS.gene40650:intron | 20.0% |
| !! | AGTTCATATCAGTATTAATA+AGG | + | chr4.1:33654926-33654945 | None:intergenic | 20.0% |
| !! | CTTTCTTGAATTCAATAAAA+TGG | - | chr4.1:33655261-33655280 | MS.gene40650:intron | 20.0% |
| !! | TGGAATAGATAAAAATAACA+AGG | + | chr4.1:33653849-33653868 | None:intergenic | 20.0% |
| !!! | AATTTTTGACTTTCGTTTTT+TGG | - | chr4.1:33654591-33654610 | MS.gene40650:intron | 20.0% |
| !!! | CATTTTATTGAATTCAAGAA+AGG | + | chr4.1:33655263-33655282 | None:intergenic | 20.0% |
| !!! | GATGATTATACTTTTTCTTT+AGG | - | chr4.1:33654989-33655008 | MS.gene40650:intron | 20.0% |
| !!! | GTTGTTTTTATAAGTTATCA+TGG | + | chr4.1:33654868-33654887 | None:intergenic | 20.0% |
| !!! | TATTTTCAACTTATGTTCAT+AGG | - | chr4.1:33654838-33654857 | MS.gene40650:intron | 20.0% |
| !!! | TGATTATACTTTTTCTTTAG+GGG | - | chr4.1:33654991-33655010 | MS.gene40650:intron | 20.0% |
| !!! | TTGATGATGTTTAGAATAAA+TGG | - | chr4.1:33654313-33654332 | MS.gene40650:intron | 20.0% |
| !!! | TTTTCTAATTGTAAGCTTTT+TGG | - | chr4.1:33654554-33654573 | MS.gene40650:intron | 20.0% |
| ! | AAATATCCTGGATATATACA+TGG | - | chr4.1:33654349-33654368 | MS.gene40650:intron | 25.0% |
| ! | AACAAGGATATTGAATTGAT+CGG | + | chr4.1:33653833-33653852 | None:intergenic | 25.0% |
| ! | ACAAATGTTAGTAGTTAGTT+TGG | + | chr4.1:33654507-33654526 | None:intergenic | 25.0% |
| ! | ATATCCAGTCAAATATATGA+AGG | + | chr4.1:33655089-33655108 | None:intergenic | 25.0% |
| ! | GTACAAATTTACAAATATCC+TGG | - | chr4.1:33654337-33654356 | MS.gene40650:intron | 25.0% |
| ! | TCATATGCTCTACATATTAT+AGG | - | chr4.1:33653916-33653935 | MS.gene40650:CDS | 25.0% |
| ! | TTAGGTCTGATTATTATCTA+CGG | - | chr4.1:33654751-33654770 | MS.gene40650:intron | 25.0% |
| ! | TTCTTGTAAAAATGTTTGAG+AGG | - | chr4.1:33655616-33655635 | MS.gene40650:CDS | 25.0% |
| !! | ATACTAATGTTACACCTTTT+GGG | - | chr4.1:33654410-33654429 | MS.gene40650:intron | 25.0% |
| !! | TTTTGTAAAAGAAACTCGAT+GGG | + | chr4.1:33653433-33653452 | None:intergenic | 25.0% |
| !!! | GATTATACTTTTTCTTTAGG+GGG | - | chr4.1:33654992-33655011 | MS.gene40650:intron | 25.0% |
| AACATTCCAATGTCTTACTT+AGG | - | chr4.1:33654001-33654020 | MS.gene40650:intron | 30.0% | |
| ACAAGGATATTGAATTGATC+GGG | + | chr4.1:33653832-33653851 | None:intergenic | 30.0% | |
| ACAATACCATGTATATATCC+AGG | + | chr4.1:33654358-33654377 | None:intergenic | 30.0% | |
| ACATTCCAATGTCTTACTTA+GGG | - | chr4.1:33654002-33654021 | MS.gene40650:intron | 30.0% | |
| ACTATACATTTAGAAAGCAG+AGG | + | chr4.1:33654654-33654673 | None:intergenic | 30.0% | |
| ATCAGACTTTACTTAACTCT+CGG | + | chr4.1:33653772-33653791 | None:intergenic | 30.0% | |
| ATGAACTGAAAACAAAAGTG+GGG | - | chr4.1:33655574-33655593 | MS.gene40650:CDS | 30.0% | |
| GACATTGGAATGTTTACTAT+TGG | + | chr4.1:33653995-33654014 | None:intergenic | 30.0% | |
| GATGAACTGAAAACAAAAGT+GGG | - | chr4.1:33655573-33655592 | MS.gene40650:CDS | 30.0% | |
| GGGACTAATTTATAACAATG+AGG | - | chr4.1:33653968-33653987 | MS.gene40650:intron | 30.0% | |
| GTTGTTGAATGCATAGTTAA+AGG | + | chr4.1:33653535-33653554 | None:intergenic | 30.0% | |
| TAACCAAAATACCCTTTCAA+TGG | + | chr4.1:33653604-33653623 | None:intergenic | 30.0% | |
| TATGCATTCAACAACACTAA+TGG | - | chr4.1:33653540-33653559 | MS.gene40650:CDS | 30.0% | |
| TGTGTCCATAGAAAGATTAA+GGG | - | chr4.1:33654723-33654742 | MS.gene40650:intron | 30.0% | |
| TTAATCCCTAAGTAAGACAT+TGG | + | chr4.1:33654010-33654029 | None:intergenic | 30.0% | |
| TTGAAGCATACAAAGTCTAT+TGG | - | chr4.1:33655144-33655163 | MS.gene40650:intron | 30.0% | |
| TTGTGTCCATAGAAAGATTA+AGG | - | chr4.1:33654722-33654741 | MS.gene40650:intron | 30.0% | |
| TTTAATCCTTCGATTCTTAG+AGG | - | chr4.1:33653718-33653737 | MS.gene40650:CDS | 30.0% | |
| TTTCTTACATTGCTTGAAAG+AGG | - | chr4.1:33654783-33654802 | MS.gene40650:intron | 30.0% | |
| TTTGTAAAAGAAACTCGATG+GGG | + | chr4.1:33653432-33653451 | None:intergenic | 30.0% | |
| ! | AAACTTTTTGCAGGAACTAA+AGG | - | chr4.1:33654039-33654058 | MS.gene40650:intron | 30.0% |
| ! | AACCAAAAGAAACTTTTTGC+AGG | - | chr4.1:33654030-33654049 | MS.gene40650:intron | 30.0% |
| ! | CATACTAATGTTACACCTTT+TGG | - | chr4.1:33654409-33654428 | MS.gene40650:intron | 30.0% |
| ! | CTTTTGTAAAAGAAACTCGA+TGG | + | chr4.1:33653434-33653453 | None:intergenic | 30.0% |
| ! | TTAGTAGTTAGTTTGGTAGA+GGG | + | chr4.1:33654500-33654519 | None:intergenic | 30.0% |
| ! | TTCCTGCAAAAAGTTTCTTT+TGG | + | chr4.1:33654035-33654054 | None:intergenic | 30.0% |
| !! | TGATAAATTGGTGATGTGAA+AGG | - | chr4.1:33654257-33654276 | MS.gene40650:intron | 30.0% |
| !!! | GGTACTGTTATGTTGATTTT+TGG | - | chr4.1:33655317-33655336 | MS.gene40650:intron | 30.0% |
| !!! | GTTATGTTGATTTTTGGCAT+GGG | - | chr4.1:33655323-33655342 | MS.gene40650:intron | 30.0% |
| !!! | TGTTATGTTGATTTTTGGCA+TGG | - | chr4.1:33655322-33655341 | MS.gene40650:intron | 30.0% |
| AAAGAGAGAGGATCCTTTAA+GGG | + | chr4.1:33655408-33655427 | None:intergenic | 35.0% | |
| AATGTTTGAGAGGAGCAAAA+TGG | - | chr4.1:33655626-33655645 | MS.gene40650:CDS | 35.0% | |
| ACAAGCCCTTAATCTTTCTA+TGG | + | chr4.1:33654731-33654750 | None:intergenic | 35.0% | |
| ACATGGTATTGTGAATGATG+TGG | - | chr4.1:33654366-33654385 | MS.gene40650:intron | 35.0% | |
| ACATTGCTTGAAAGAGGTTA+CGG | - | chr4.1:33654789-33654808 | MS.gene40650:intron | 35.0% | |
| ACTTAGTAAATCCAATCCTG+TGG | + | chr4.1:33655661-33655680 | None:intergenic | 35.0% | |
| AGACTAGTGTATTTGCACAA+AGG | - | chr4.1:33654065-33654084 | MS.gene40650:intron | 35.0% | |
| ATCAGATGAAGAAGAGCTTA+AGG | + | chr4.1:33653460-33653479 | None:intergenic | 35.0% | |
| CAAGCCTTCATATATTTGAC+TGG | - | chr4.1:33655082-33655101 | MS.gene40650:intron | 35.0% | |
| CATTGCTTCGCATTTACTAA+AGG | + | chr4.1:33654686-33654705 | None:intergenic | 35.0% | |
| CGATGAACTGAAAACAAAAG+TGG | - | chr4.1:33655572-33655591 | MS.gene40650:CDS | 35.0% | |
| CGTTAAGATAATTGAACAGC+TGG | + | chr4.1:33655493-33655512 | None:intergenic | 35.0% | |
| CTTGCTTATGCAGATTATGA+AGG | + | chr4.1:33655725-33655744 | None:intergenic | 35.0% | |
| TATTGGACAAGTTGTGTCAA+AGG | - | chr4.1:33655161-33655180 | MS.gene40650:intron | 35.0% | |
| TGAAGAGAATAAGGTGTAGA+GGG | + | chr4.1:33653387-33653406 | None:intergenic | 35.0% | |
| TTGAATGCATAGTTAAAGGC+AGG | + | chr4.1:33653531-33653550 | None:intergenic | 35.0% | |
| TTTGAACCATCCTAACAAGT+GGG | + | chr4.1:33653569-33653588 | None:intergenic | 35.0% | |
| ! | GAAAGATTAAGGGCTTGTTT+AGG | - | chr4.1:33654733-33654752 | MS.gene40650:intron | 35.0% |
| ! | GACACTAGTGATTTGAAGTA+CGG | - | chr4.1:33653746-33653765 | MS.gene40650:CDS | 35.0% |
| ! | GTATATATCGTCTCCTTTTC+AGG | - | chr4.1:33655518-33655537 | MS.gene40650:CDS | 35.0% |
| ! | GTTAGTAGTTAGTTTGGTAG+AGG | + | chr4.1:33654501-33654520 | None:intergenic | 35.0% |
| ! | TTTTGAACCATCCTAACAAG+TGG | + | chr4.1:33653570-33653589 | None:intergenic | 35.0% |
| !! | TAATGTTACACCTTTTGGGT+TGG | - | chr4.1:33654414-33654433 | MS.gene40650:intron | 35.0% |
| !! | TTTTTCTTTAGGGGGTTTTC+TGG | - | chr4.1:33655000-33655019 | MS.gene40650:intron | 35.0% |
| !!! | AATGTTACACCTTTTGGGTT+GGG | - | chr4.1:33654415-33654434 | MS.gene40650:intron | 35.0% |
| !!! | AGCTTTTTGGTTGTATGATC+AGG | - | chr4.1:33654567-33654586 | MS.gene40650:intron | 35.0% |
| !!! | ATTTTTGGCATGGGCTTATA+TGG | - | chr4.1:33655332-33655351 | MS.gene40650:intron | 35.0% |
| !!! | CTTCCATTGAAAGGGTATTT+TGG | - | chr4.1:33653598-33653617 | MS.gene40650:intron | 35.0% |
| AAAATGGTTGTCATTGCCAC+AGG | - | chr4.1:33655642-33655661 | MS.gene40650:CDS | 40.0% | |
| AGAGGGAGAAAAATCGTTAG+CGG | + | chr4.1:33654483-33654502 | None:intergenic | 40.0% | |
| ATACCGAGTCTTCCATTGAA+AGG | - | chr4.1:33653589-33653608 | MS.gene40650:intron | 40.0% | |
| CAAAGAGAGAGGATCCTTTA+AGG | + | chr4.1:33655409-33655428 | None:intergenic | 40.0% | |
| CTTAAAGGATCCTCTCTCTT+TGG | - | chr4.1:33655407-33655426 | MS.gene40650:intron | 40.0% | |
| GTGAAGAGAATAAGGTGTAG+AGG | + | chr4.1:33653388-33653407 | None:intergenic | 40.0% | |
| TACCCTTTCAATGGAAGACT+CGG | + | chr4.1:33653595-33653614 | None:intergenic | 40.0% | |
| TACCGAGTCTTCCATTGAAA+GGG | - | chr4.1:33653590-33653609 | MS.gene40650:intron | 40.0% | |
| ! | CACTATCCTCTAAGAATCGA+AGG | + | chr4.1:33653727-33653746 | None:intergenic | 40.0% |
| ! | CGGTTGATGTGAAGAGAATA+AGG | + | chr4.1:33653396-33653415 | None:intergenic | 40.0% |
| ! | CTGCTTCTAGTTGAAGCAAT+TGG | - | chr4.1:33655206-33655225 | MS.gene40650:intron | 40.0% |
| !! | CTTTGGAATGTTCGCTTTGA+AGG | - | chr4.1:33655424-33655443 | MS.gene40650:intron | 40.0% |
| !! | GAGCTGATTTTCATCCACTT+AGG | + | chr4.1:33655549-33655568 | None:intergenic | 40.0% |
| ACAGAAGGTTGCACATCATG+AGG | + | chr4.1:33655377-33655396 | None:intergenic | 45.0% | |
| AGCGAACATTCCAAAGAGAG+AGG | + | chr4.1:33655420-33655439 | None:intergenic | 45.0% | |
| AGGAGTTCACACTGGAAAGA+TGG | - | chr4.1:33655181-33655200 | MS.gene40650:intron | 45.0% | |
| CTAATGGCAACCCACTTGTT+AGG | - | chr4.1:33653556-33653575 | MS.gene40650:intron | 45.0% | |
| GATGGGGAAGATGTGATGAA+CGG | + | chr4.1:33653416-33653435 | None:intergenic | 45.0% | |
| GCTGCAGATGTTTATCTTGC+TGG | - | chr4.1:33655296-33655315 | MS.gene40650:intron | 45.0% | |
| TAGTTAAAGGCAGGCTCAGT+TGG | + | chr4.1:33653522-33653541 | None:intergenic | 45.0% | |
| TGTGTCAAAGGAGTTCACAC+TGG | - | chr4.1:33655173-33655192 | MS.gene40650:intron | 45.0% | |
| ! | GGCACACTTTGTTGTGATGA+TGG | + | chr4.1:33653492-33653511 | None:intergenic | 45.0% |
| !! | TATCGTCTCCTTTTCAGGAG+AGG | - | chr4.1:33655523-33655542 | MS.gene40650:CDS | 45.0% |
| !!! | TTTTTGGCACTGCTTGCTGT+TGG | - | chr4.1:33654607-33654626 | MS.gene40650:intron | 45.0% |
| !! | TTAAAATAAAAATAAAAGTA+AGG | + | chr4.1:33653703-33653722 | None:intergenic | 5.0% |
| CACAACAAAGTGTGCCATCC+AGG | - | chr4.1:33653496-33653515 | MS.gene40650:CDS | 50.0% | |
| CACTTAGGCCTCTCCTGAAA+AGG | + | chr4.1:33655534-33655553 | None:intergenic | 50.0% | |
| GGTTGTCATTGCCACAGGAT+TGG | - | chr4.1:33655647-33655666 | MS.gene40650:CDS | 50.0% | |
| ! | GAGAGGATCCTTTAAGGGCA+CGG | + | chr4.1:33655403-33655422 | None:intergenic | 50.0% |
| ! | TGGCAACCCACTTGTTAGGA+TGG | - | chr4.1:33653560-33653579 | MS.gene40650:intron | 50.0% |
| !! | CTTTTCAGGAGAGGCCTAAG+TGG | - | chr4.1:33655532-33655551 | MS.gene40650:CDS | 50.0% |
| CTTCCACGTCCCAACCCAAA+AGG | + | chr4.1:33654427-33654446 | None:intergenic | 55.0% | |
| TCTGTCGACCGTGCCCTTAA+AGG | - | chr4.1:33655392-33655411 | MS.gene40650:intron | 55.0% | |
| ! | TTAAGGGCACGGTCGACAGA+AGG | + | chr4.1:33655392-33655411 | None:intergenic | 55.0% |
| !! | GCTTGCTGTTGGAGGTTCCT+TGG | - | chr4.1:33654618-33654637 | MS.gene40650:intron | 55.0% |
| !! | TTGGCACTGCTTGCTGTTGG+AGG | - | chr4.1:33654610-33654629 | MS.gene40650:intron | 55.0% |
| !!! | ACACCTTTTGGGTTGGGACG+TGG | - | chr4.1:33654421-33654440 | MS.gene40650:intron | 55.0% |
| !!! | CTTTTGGGTTGGGACGTGGA+AGG | - | chr4.1:33654425-33654444 | MS.gene40650:intron | 55.0% |
| AAAGGCAGGCTCAGTTGGCC+TGG | + | chr4.1:33653517-33653536 | None:intergenic | 60.0% | |
| GCTGTTGGAGGTTCCTTGGC+TGG | - | chr4.1:33654622-33654641 | MS.gene40650:intron | 60.0% | |
| GCAGAGGAGTGAGCCAGCCA+AGG | + | chr4.1:33654638-33654657 | None:intergenic | 65.0% | |
| ! | GCAGGCTCAGTTGGCCTGGA+TGG | + | chr4.1:33653513-33653532 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 33653354 | 33655749 | 33653354 | ID=MS.gene40650 |
| chr4.1 | mRNA | 33653354 | 33655749 | 33653354 | ID=MS.gene40650.t1;Parent=MS.gene40650 |
| chr4.1 | exon | 33655492 | 33655749 | 33655492 | ID=MS.gene40650.t1.exon1;Parent=MS.gene40650.t1 |
| chr4.1 | CDS | 33655492 | 33655749 | 33655492 | ID=cds.MS.gene40650.t1;Parent=MS.gene40650.t1 |
| chr4.1 | exon | 33654437 | 33654514 | 33654437 | ID=MS.gene40650.t1.exon2;Parent=MS.gene40650.t1 |
| chr4.1 | CDS | 33654437 | 33654514 | 33654437 | ID=cds.MS.gene40650.t1;Parent=MS.gene40650.t1 |
| chr4.1 | exon | 33653876 | 33653975 | 33653876 | ID=MS.gene40650.t1.exon3;Parent=MS.gene40650.t1 |
| chr4.1 | CDS | 33653876 | 33653975 | 33653876 | ID=cds.MS.gene40650.t1;Parent=MS.gene40650.t1 |
| chr4.1 | exon | 33653658 | 33653800 | 33653658 | ID=MS.gene40650.t1.exon4;Parent=MS.gene40650.t1 |
| chr4.1 | CDS | 33653658 | 33653800 | 33653658 | ID=cds.MS.gene40650.t1;Parent=MS.gene40650.t1 |
| chr4.1 | exon | 33653354 | 33653563 | 33653354 | ID=MS.gene40650.t1.exon5;Parent=MS.gene40650.t1 |
| chr4.1 | CDS | 33653354 | 33653563 | 33653354 | ID=cds.MS.gene40650.t1;Parent=MS.gene40650.t1 |
| Gene Sequence |
| Protein sequence |
