Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41235.t1 | XP_013467304.1 | 100 | 96 | 0 | 0 | 1 | 96 | 1 | 96 | 1.40E-43 | 185.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41235.t1 | I3S1M4 | 100.0 | 96 | 0 | 0 | 1 | 96 | 1 | 96 | 9.8e-44 | 185.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene41235 | 0.812665 | 3.78E-51 | -1.69E-46 |
| MS.gene049254 | MS.gene41235 | 0.809302 | 2.02E-50 | -1.69E-46 |
| MS.gene049404 | MS.gene41235 | 0.807123 | 5.89E-50 | -1.69E-46 |
| MS.gene049501 | MS.gene41235 | 0.807903 | 4.03E-50 | -1.69E-46 |
| MS.gene050719 | MS.gene41235 | 0.803161 | 3.98E-49 | -1.69E-46 |
| MS.gene050721 | MS.gene41235 | 0.801077 | 1.07E-48 | -1.69E-46 |
| MS.gene050724 | MS.gene41235 | 0.8117 | 6.14E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene41235 | 0.807982 | 3.87E-50 | -1.69E-46 |
| MS.gene050844 | MS.gene41235 | 0.802947 | 4.41E-49 | -1.69E-46 |
| MS.gene050953 | MS.gene41235 | 0.817411 | 3.34E-52 | -1.69E-46 |
| MS.gene051181 | MS.gene41235 | 0.822795 | 1.96E-53 | -1.69E-46 |
| MS.gene051243 | MS.gene41235 | 0.805077 | 1.59E-49 | -1.69E-46 |
| MS.gene051247 | MS.gene41235 | 0.811501 | 6.78E-51 | -1.69E-46 |
| MS.gene051328 | MS.gene41235 | 0.804453 | 2.14E-49 | -1.69E-46 |
| MS.gene051574 | MS.gene41235 | 0.829184 | 5.93E-55 | -1.69E-46 |
| MS.gene051744 | MS.gene41235 | 0.82575 | 3.95E-54 | -1.69E-46 |
| MS.gene052519 | MS.gene41235 | 0.814957 | 1.18E-51 | -1.69E-46 |
| MS.gene052561 | MS.gene41235 | 0.823678 | 1.22E-53 | -1.69E-46 |
| MS.gene052863 | MS.gene41235 | 0.802239 | 6.16E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene41235 | 0.801068 | 1.07E-48 | -1.69E-46 |
| MS.gene054405 | MS.gene41235 | 0.807975 | 3.89E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene41235 | 0.818862 | 1.57E-52 | -1.69E-46 |
| MS.gene055228 | MS.gene41235 | 0.811705 | 6.12E-51 | -1.69E-46 |
| MS.gene055818 | MS.gene41235 | 0.807164 | 5.78E-50 | -1.69E-46 |
| MS.gene056366 | MS.gene41235 | 0.836565 | 8.69E-57 | -1.69E-46 |
| MS.gene056760 | MS.gene41235 | 0.806934 | 6.46E-50 | -1.69E-46 |
| MS.gene057060 | MS.gene41235 | 0.813629 | 2.32E-51 | -1.69E-46 |
| MS.gene057444 | MS.gene41235 | 0.800696 | 1.28E-48 | -1.69E-46 |
| MS.gene058146 | MS.gene41235 | 0.838425 | 2.90E-57 | -1.69E-46 |
| MS.gene058979 | MS.gene41235 | 0.80629 | 8.84E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene41235 | 0.805345 | 1.40E-49 | -1.69E-46 |
| MS.gene059842 | MS.gene41235 | 0.803433 | 3.49E-49 | -1.69E-46 |
| MS.gene060310 | MS.gene41235 | 0.834186 | 3.47E-56 | -1.69E-46 |
| MS.gene060322 | MS.gene41235 | 0.80766 | 4.54E-50 | -1.69E-46 |
| MS.gene060429 | MS.gene41235 | 0.846444 | 2.16E-59 | -1.69E-46 |
| MS.gene060572 | MS.gene41235 | 0.806343 | 8.62E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41235.t1 | MTR_1g048960 | 100.000 | 96 | 0 | 0 | 1 | 96 | 1 | 96 | 1.00e-66 | 195 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41235.t1 | AT1G72020 | 69.072 | 97 | 29 | 1 | 1 | 96 | 1 | 97 | 2.43e-45 | 141 |
Find 20 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGAGGGATTTGACCTGATT+TGG | 0.301994 | 1.4:+35706625 | None:intergenic |
| CTTGGACAAGATGAAGTATC+AGG | 0.339393 | 1.4:-35704782 | MS.gene41235:CDS |
| TTGACCTGATTTGGAGATAG+AGG | 0.379867 | 1.4:+35706634 | None:intergenic |
| AGTAGAGGATTTCATTCAAC+TGG | 0.419375 | 1.4:-35704874 | MS.gene41235:CDS |
| CAGCAAAAGAAGACAGCATC+TGG | 0.440272 | 1.4:-35704685 | MS.gene41235:CDS |
| GAATCCTCTATCTCCAAATC+AGG | 0.460949 | 1.4:-35706638 | MS.gene41235:intron |
| GTGTTCACAGCTTTCAGCAT+TGG | 0.501579 | 1.4:-35704739 | MS.gene41235:CDS |
| TTCAACTGGCGTGAAGAGGA+TGG | 0.515922 | 1.4:-35704860 | MS.gene41235:CDS |
| TGCATATCACATGTACAACT+TGG | 0.529028 | 1.4:-35704800 | MS.gene41235:CDS |
| AAGAGGATGGGAGGTGGACA+TGG | 0.543948 | 1.4:-35704847 | MS.gene41235:CDS |
| GGCGTGAAGAGGATGGGAGG+TGG | 0.551979 | 1.4:-35704853 | MS.gene41235:CDS |
| TTCATTCAACTGGCGTGAAG+AGG | 0.553273 | 1.4:-35704864 | MS.gene41235:CDS |
| TCAACTGGCGTGAAGAGGAT+GGG | 0.574066 | 1.4:-35704859 | MS.gene41235:CDS |
| GCATATACTCTGGTTCGCTA+TGG | 0.578575 | 1.4:+35704824 | None:intergenic |
| TGGAAAATGACTGCATACAC+AGG | 0.585917 | 1.4:+35704706 | None:intergenic |
| TTGGACAAGATGAAGTATCA+GGG | 0.612137 | 1.4:-35704781 | MS.gene41235:CDS |
| ATAACGATGGCATTGAACAA+CGG | 0.641834 | 1.4:-35706695 | None:intergenic |
| TATGTTGTGACAGTGAGTAG+AGG | 0.664220 | 1.4:-35704889 | MS.gene41235:intron |
| TGATATGCATGCATATACTC+TGG | 0.665333 | 1.4:+35704814 | None:intergenic |
| ACTGGCGTGAAGAGGATGGG+AGG | 0.681452 | 1.4:-35704856 | MS.gene41235:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATTTGATTTATTAATAAA+TGG | - | chr1.4:35704875-35704894 | MS.gene41235:CDS | 10.0% |
| !! | TTGATTTATTAATAAATGGA+GGG | - | chr1.4:35704879-35704898 | MS.gene41235:CDS | 15.0% |
| !!! | AGTTTTATATATGTATTACA+TGG | - | chr1.4:35705560-35705579 | MS.gene41235:intron | 15.0% |
| !!! | GTTTTATATATGTATTACAT+GGG | - | chr1.4:35705561-35705580 | MS.gene41235:intron | 15.0% |
| !!! | TTACATTAGGTTTTTTATTT+GGG | - | chr1.4:35704838-35704857 | MS.gene41235:CDS | 15.0% |
| !!! | TTTGATTTATTAATAAATGG+AGG | - | chr1.4:35704878-35704897 | MS.gene41235:CDS | 15.0% |
| !!! | TTTGTTTTTACTTTCAATTT+CGG | - | chr1.4:35704815-35704834 | MS.gene41235:CDS | 15.0% |
| !! | AATTAACGGTTTAGATTAAA+TGG | - | chr1.4:35705650-35705669 | MS.gene41235:intron | 20.0% |
| !! | GAATATTATTAATGATACTC+TGG | + | chr1.4:35705530-35705549 | None:intergenic | 20.0% |
| !! | TTATTTGACTAATGAACATA+TGG | - | chr1.4:35705472-35705491 | MS.gene41235:intron | 20.0% |
| !!! | AGAATGACTTTTTTTTTATG+TGG | + | chr1.4:35706385-35706404 | None:intergenic | 20.0% |
| !!! | GTTACATTAGGTTTTTTATT+TGG | - | chr1.4:35704837-35704856 | MS.gene41235:CDS | 20.0% |
| !!! | TAAAACAATTTTGTTGTCTA+AGG | - | chr1.4:35705062-35705081 | MS.gene41235:intron | 20.0% |
| !!! | TACATTAGGTTTTTTATTTG+GGG | - | chr1.4:35704839-35704858 | MS.gene41235:CDS | 20.0% |
| ! | AAATCTTCCTCAAAAGTAAT+CGG | + | chr1.4:35704790-35704809 | None:intergenic | 25.0% |
| ! | AAATTAACATGGATCTTAGA+GGG | - | chr1.4:35705211-35705230 | MS.gene41235:intron | 25.0% |
| ! | AAGACCTAAGATAAATTTGA+AGG | + | chr1.4:35705368-35705387 | None:intergenic | 25.0% |
| ! | GTCATTGGATTAACAATTAA+CGG | - | chr1.4:35705636-35705655 | MS.gene41235:intron | 25.0% |
| ! | GTTAAATACAGTTCTTGATT+GGG | - | chr1.4:35706266-35706285 | MS.gene41235:intron | 25.0% |
| ! | TGTTAAATACAGTTCTTGAT+TGG | - | chr1.4:35706265-35706284 | MS.gene41235:intron | 25.0% |
| !! | ATCAATATTTTCAATGCATC+GGG | + | chr1.4:35705010-35705029 | None:intergenic | 25.0% |
| !! | CATCAATATTTTCAATGCAT+CGG | + | chr1.4:35705011-35705030 | None:intergenic | 25.0% |
| !!! | ACATTAGGTTTTTTATTTGG+GGG | - | chr1.4:35704840-35704859 | MS.gene41235:CDS | 25.0% |
| !!! | ATTTTGTACATTTTGATCCA+AGG | + | chr1.4:35705803-35705822 | None:intergenic | 25.0% |
| !!! | GTTTTGATTCCAAATTAACA+TGG | - | chr1.4:35705200-35705219 | MS.gene41235:intron | 25.0% |
| !!! | TGATGTTTTAAATTGCGATT+AGG | - | chr1.4:35704915-35704934 | MS.gene41235:intron | 25.0% |
| !!! | TTGTGGTTTTGTTTATATTG+TGG | - | chr1.4:35704938-35704957 | MS.gene41235:intron | 25.0% |
| AAAGAATTCCTGTTAGTCAT+TGG | - | chr1.4:35705621-35705640 | MS.gene41235:intron | 30.0% | |
| ACTTAAGCACGAATATTCAA+TGG | - | chr1.4:35705945-35705964 | MS.gene41235:intron | 30.0% | |
| ATACAAAATATTGGCGTATG+GGG | - | chr1.4:35706290-35706309 | MS.gene41235:intron | 30.0% | |
| CAAATTAACATGGATCTTAG+AGG | - | chr1.4:35705210-35705229 | MS.gene41235:intron | 30.0% | |
| CATACAAAATATTGGCGTAT+GGG | - | chr1.4:35706289-35706308 | MS.gene41235:intron | 30.0% | |
| CCTAAGATAAATTTGAAGGT+CGG | + | chr1.4:35705364-35705383 | None:intergenic | 30.0% | |
| CTTAAGCACGAATATTCAAT+GGG | - | chr1.4:35705946-35705965 | MS.gene41235:intron | 30.0% | |
| CTTTCAATTTCGGTTACATT+AGG | - | chr1.4:35704825-35704844 | MS.gene41235:CDS | 30.0% | |
| TGATTGGGCATACAAAATAT+TGG | - | chr1.4:35706281-35706300 | MS.gene41235:intron | 30.0% | |
| TTGTTAATCCAATGACTAAC+AGG | + | chr1.4:35705632-35705651 | None:intergenic | 30.0% | |
| TTTCCTAGACATCTTAAAAC+AGG | + | chr1.4:35706420-35706439 | None:intergenic | 30.0% | |
| ! | AAAACATTCTTTGTTGGTTG+TGG | - | chr1.4:35706167-35706186 | MS.gene41235:intron | 30.0% |
| ! | AAACATTCTTTGTTGGTTGT+GGG | - | chr1.4:35706168-35706187 | MS.gene41235:intron | 30.0% |
| ! | GAAGATAAAAGTGTAATGTG+AGG | + | chr1.4:35705688-35705707 | None:intergenic | 30.0% |
| ! | TTTAAATTGCGATTAGGTTG+TGG | - | chr1.4:35704921-35704940 | MS.gene41235:intron | 30.0% |
| ! | TTTTTATGTGGAAACGAAAG+AGG | + | chr1.4:35706373-35706392 | None:intergenic | 30.0% |
| !! | CTCTAAGATCCATGTTAATT+TGG | + | chr1.4:35705212-35705231 | None:intergenic | 30.0% |
| !! | TTGAAAAGTATCAGTATGCA+AGG | + | chr1.4:35705773-35705792 | None:intergenic | 30.0% |
| AAAGAGTCGAAAGAACATGA+AGG | - | chr1.4:35705262-35705281 | MS.gene41235:intron | 35.0% | |
| AAAGCTAACAATATCGCCAT+TGG | - | chr1.4:35706195-35706214 | MS.gene41235:intron | 35.0% | |
| AAGAACATGAAGGGGAAAAA+AGG | - | chr1.4:35705272-35705291 | MS.gene41235:intron | 35.0% | |
| AAGAGGTTCTTGTTAGTCAT+CGG | + | chr1.4:35706356-35706375 | None:intergenic | 35.0% | |
| AAGAGTCGAAAGAACATGAA+GGG | - | chr1.4:35705263-35705282 | MS.gene41235:intron | 35.0% | |
| AGCAGACTAATGTATGAGAA+GGG | - | chr1.4:35705106-35705125 | MS.gene41235:intron | 35.0% | |
| AGTAGAGGATTTCATTCAAC+TGG | - | chr1.4:35706496-35706515 | MS.gene41235:intron | 35.0% | |
| AGTCATCGGATTAAAGTAGA+TGG | + | chr1.4:35706342-35706361 | None:intergenic | 35.0% | |
| ATGCAAAACATCCAAGGATA+GGG | + | chr1.4:35705859-35705878 | None:intergenic | 35.0% | |
| CAACTGAACTAAGAAACAGT+AGG | + | chr1.4:35705396-35705415 | None:intergenic | 35.0% | |
| CATTAAATGCAGCGAAAACA+TGG | + | chr1.4:35705423-35705442 | None:intergenic | 35.0% | |
| CCGACCTTCAAATTTATCTT+AGG | - | chr1.4:35705361-35705380 | MS.gene41235:intron | 35.0% | |
| CGGATTGAACATGAAAGAAA+AGG | + | chr1.4:35704770-35704789 | None:intergenic | 35.0% | |
| GAACATGAAAGAAAAGGTGA+GGG | + | chr1.4:35704764-35704783 | None:intergenic | 35.0% | |
| GCATACAAAATATTGGCGTA+TGG | - | chr1.4:35706288-35706307 | MS.gene41235:intron | 35.0% | |
| TAGCAGACTAATGTATGAGA+AGG | - | chr1.4:35705105-35705124 | MS.gene41235:intron | 35.0% | |
| TCAGAATTTAACTCCTGGAA+GGG | - | chr1.4:35705970-35705989 | MS.gene41235:intron | 35.0% | |
| TGAACATGAAAGAAAAGGTG+AGG | + | chr1.4:35704765-35704784 | None:intergenic | 35.0% | |
| TGATATGCATGCATATACTC+TGG | + | chr1.4:35706559-35706578 | None:intergenic | 35.0% | |
| TGATTCATGCAAAACATCCA+AGG | + | chr1.4:35705865-35705884 | None:intergenic | 35.0% | |
| TGCATATCACATGTACAACT+TGG | - | chr1.4:35706570-35706589 | MS.gene41235:intron | 35.0% | |
| TTCAGAATTTAACTCCTGGA+AGG | - | chr1.4:35705969-35705988 | MS.gene41235:intron | 35.0% | |
| TTTATAGCCTCAAAAGCAGT+TGG | + | chr1.4:35706110-35706129 | None:intergenic | 35.0% | |
| ! | AAAGTATCAGTATGCAAGGA+TGG | + | chr1.4:35705769-35705788 | None:intergenic | 35.0% |
| ! | ATCTTAGAGGGCTTTTGTTA+TGG | - | chr1.4:35705223-35705242 | MS.gene41235:intron | 35.0% |
| ! | TTGGACAAGATGAAGTATCA+GGG | - | chr1.4:35706589-35706608 | MS.gene41235:intron | 35.0% |
| !! | GTACATTTTGATCCAAGGTT+GGG | + | chr1.4:35705798-35705817 | None:intergenic | 35.0% |
| !! | GTTCAATCCGATTACTTTTG+AGG | - | chr1.4:35704780-35704799 | MS.gene41235:CDS | 35.0% |
| !! | TGTACATTTTGATCCAAGGT+TGG | + | chr1.4:35705799-35705818 | None:intergenic | 35.0% |
| !!! | ATGGGTATTTTGATCCAAGA+TGG | + | chr1.4:35705742-35705761 | None:intergenic | 35.0% |
| !!! | TCTCCTGTTTTAAGATGTCT+AGG | - | chr1.4:35706414-35706433 | MS.gene41235:intron | 35.0% |
| AACATACAGAACCCTATCCT+TGG | - | chr1.4:35705845-35705864 | MS.gene41235:intron | 40.0% | |
| AAGATGGCAATGACAACAAG+AGG | + | chr1.4:35705726-35705745 | None:intergenic | 40.0% | |
| AGAGTCGAAAGAACATGAAG+GGG | - | chr1.4:35705264-35705283 | MS.gene41235:intron | 40.0% | |
| AGTATGCAAGGATGGTGATA+TGG | + | chr1.4:35705761-35705780 | None:intergenic | 40.0% | |
| CATGCAAAACATCCAAGGAT+AGG | + | chr1.4:35705860-35705879 | None:intergenic | 40.0% | |
| GAATCCTCTATCTCCAAATC+AGG | - | chr1.4:35704732-35704751 | MS.gene41235:CDS | 40.0% | |
| GGCTGGAAAACATTCTTTGT+TGG | - | chr1.4:35706161-35706180 | MS.gene41235:intron | 40.0% | |
| GTATGCAAGGATGGTGATAT+GGG | + | chr1.4:35705760-35705779 | None:intergenic | 40.0% | |
| GTTAGTGGCATAGTTGTATG+TGG | - | chr1.4:35706046-35706065 | MS.gene41235:intron | 40.0% | |
| TAGGGTTCTGTATGTTTGTG+AGG | + | chr1.4:35705841-35705860 | None:intergenic | 40.0% | |
| TATGTTGTGACAGTGAGTAG+AGG | - | chr1.4:35706481-35706500 | MS.gene41235:intron | 40.0% | |
| TGGAAAATGACTGCATACAC+AGG | + | chr1.4:35706667-35706686 | None:intergenic | 40.0% | |
| TGGGTTCAGAATTTAACTCC+TGG | - | chr1.4:35705965-35705984 | MS.gene41235:intron | 40.0% | |
| ! | CTTGGACAAGATGAAGTATC+AGG | - | chr1.4:35706588-35706607 | MS.gene41235:intron | 40.0% |
| ! | TCTTGTTGTCATTGCCATCT+TGG | - | chr1.4:35705725-35705744 | MS.gene41235:intron | 40.0% |
| !! | AACTCTGTTGGTAGCTTGAT+GGG | + | chr1.4:35706082-35706101 | None:intergenic | 40.0% |
| !! | CTTTTGTTATGGAATCGGTG+TGG | - | chr1.4:35705234-35705253 | MS.gene41235:intron | 40.0% |
| !! | GAGGGCTTTTGTTATGGAAT+CGG | - | chr1.4:35705229-35705248 | MS.gene41235:intron | 40.0% |
| !! | TACTTTTCAAGACCCAACCT+TGG | - | chr1.4:35705783-35705802 | MS.gene41235:intron | 40.0% |
| !! | TTGACCTGATTTGGAGATAG+AGG | + | chr1.4:35704739-35704758 | None:intergenic | 40.0% |
| AACCAGCATCCCCATTTCAA+TGG | - | chr1.4:35706129-35706148 | MS.gene41235:intron | 45.0% | |
| ACCAGCATCCCCATTTCAAT+GGG | - | chr1.4:35706130-35706149 | MS.gene41235:intron | 45.0% | |
| AGGGGATGAATCAGTTTCAG+TGG | - | chr1.4:35706238-35706257 | MS.gene41235:intron | 45.0% | |
| AGTGGCATAGTTGTATGTGG+TGG | - | chr1.4:35706049-35706068 | MS.gene41235:intron | 45.0% | |
| CAGCAAAAGAAGACAGCATC+TGG | - | chr1.4:35706685-35706704 | MS.gene41235:CDS | 45.0% | |
| CCACAAGTAGAGCTGTGTTA+TGG | - | chr1.4:35705037-35705056 | MS.gene41235:intron | 45.0% | |
| CCATAACACAGCTCTACTTG+TGG | + | chr1.4:35705040-35705059 | None:intergenic | 45.0% | |
| GCTAACAATATCGCCATTGG+TGG | - | chr1.4:35706198-35706217 | MS.gene41235:intron | 45.0% | |
| GTGAGGGATTTGACCTGATT+TGG | + | chr1.4:35704748-35704767 | None:intergenic | 45.0% | |
| GTGTTCACAGCTTTCAGCAT+TGG | - | chr1.4:35706631-35706650 | MS.gene41235:intron | 45.0% | |
| TATGTTTGTGAGGTTGAGCG+AGG | + | chr1.4:35705831-35705850 | None:intergenic | 45.0% | |
| TTCATTCAACTGGCGTGAAG+AGG | - | chr1.4:35706506-35706525 | MS.gene41235:intron | 45.0% | |
| ! | ACAATATCGCCATTGGTGGT+AGG | - | chr1.4:35706202-35706221 | MS.gene41235:intron | 45.0% |
| ! | CAGATGCTGTCTTCTTTTGC+TGG | + | chr1.4:35706687-35706706 | None:intergenic | 45.0% |
| ! | GCATATACTCTGGTTCGCTA+TGG | + | chr1.4:35706549-35706568 | None:intergenic | 45.0% |
| !! | ACTCTGTTGGTAGCTTGATG+GGG | + | chr1.4:35706081-35706100 | None:intergenic | 45.0% |
| !! | GAACTCTGTTGGTAGCTTGA+TGG | + | chr1.4:35706083-35706102 | None:intergenic | 45.0% |
| !! | GCGTGAGAGAGTTTTATGCT+CGG | - | chr1.4:35706016-35706035 | MS.gene41235:intron | 45.0% |
| !! | TTCCTCTCCAACTGCTTTTG+AGG | - | chr1.4:35706100-35706119 | MS.gene41235:intron | 45.0% |
| AGCCTCAAAAGCAGTTGGAG+AGG | + | chr1.4:35706105-35706124 | None:intergenic | 50.0% | |
| ATGCTCGGCATCTTCGTTAG+TGG | - | chr1.4:35706031-35706050 | MS.gene41235:intron | 50.0% | |
| CAGTTGGAGAGGAACTCTGT+TGG | + | chr1.4:35706094-35706113 | None:intergenic | 50.0% | |
| CCAGCATCCCCATTTCAATG+GGG | - | chr1.4:35706131-35706150 | MS.gene41235:intron | 50.0% | |
| CCATTTCAATGGGGTGGCAT+CGG | - | chr1.4:35706140-35706159 | MS.gene41235:intron | 50.0% | |
| CGATGCCACCCCATTGAAAT+GGG | + | chr1.4:35706142-35706161 | None:intergenic | 50.0% | |
| GATGCCACCCCATTGAAATG+GGG | + | chr1.4:35706141-35706160 | None:intergenic | 50.0% | |
| GGCATAGTTGTATGTGGTGG+TGG | - | chr1.4:35706052-35706071 | MS.gene41235:intron | 50.0% | |
| TCAACTGGCGTGAAGAGGAT+GGG | - | chr1.4:35706511-35706530 | MS.gene41235:intron | 50.0% | |
| TCTCTGACTTCTACCCTTCC+AGG | + | chr1.4:35705986-35706005 | None:intergenic | 50.0% | |
| TTCAACTGGCGTGAAGAGGA+TGG | - | chr1.4:35706510-35706529 | MS.gene41235:intron | 50.0% | |
| TTTGTGAGGTTGAGCGAGGA+TGG | + | chr1.4:35705827-35705846 | None:intergenic | 50.0% | |
| ! | AACTGATTCATCCCCTCCCA+TGG | + | chr1.4:35706234-35706253 | None:intergenic | 50.0% |
| ! | ACTGATTCATCCCCTCCCAT+GGG | + | chr1.4:35706233-35706252 | None:intergenic | 50.0% |
| AAGAGGATGGGAGGTGGACA+TGG | - | chr1.4:35706523-35706542 | MS.gene41235:intron | 55.0% | |
| CCCCATTGAAATGGGGATGC+TGG | + | chr1.4:35706134-35706153 | None:intergenic | 55.0% | |
| CCGATGCCACCCCATTGAAA+TGG | + | chr1.4:35706143-35706162 | None:intergenic | 55.0% | |
| GCATCCCCATTTCAATGGGG+TGG | - | chr1.4:35706134-35706153 | MS.gene41235:intron | 55.0% | |
| ! | ATCGCCATTGGTGGTAGGTG+TGG | - | chr1.4:35706207-35706226 | MS.gene41235:intron | 55.0% |
| ACTGGCGTGAAGAGGATGGG+AGG | - | chr1.4:35706514-35706533 | MS.gene41235:intron | 60.0% | |
| TGGGCCACACCTACCACCAA+TGG | + | chr1.4:35706214-35706233 | None:intergenic | 60.0% | |
| TGGTGGTAGGTGTGGCCCAT+GGG | - | chr1.4:35706215-35706234 | MS.gene41235:intron | 60.0% | |
| ! | TTGGTGGTAGGTGTGGCCCA+TGG | - | chr1.4:35706214-35706233 | MS.gene41235:intron | 60.0% |
| !! | TTCAATGGGGTGGCATCGGC+TGG | - | chr1.4:35706144-35706163 | MS.gene41235:intron | 60.0% |
| GGCGTGAAGAGGATGGGAGG+TGG | - | chr1.4:35706517-35706536 | MS.gene41235:intron | 65.0% | |
| GGTAGGTGTGGCCCATGGGA+GGG | - | chr1.4:35706219-35706238 | MS.gene41235:intron | 65.0% | |
| GTAGGTGTGGCCCATGGGAG+GGG | - | chr1.4:35706220-35706239 | MS.gene41235:intron | 65.0% | |
| TGGTAGGTGTGGCCCATGGG+AGG | - | chr1.4:35706218-35706237 | MS.gene41235:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 35704681 | 35706711 | 35704681 | ID=MS.gene41235 |
| chr1.4 | mRNA | 35704681 | 35706711 | 35704681 | ID=MS.gene41235.t1;Parent=MS.gene41235 |
| chr1.4 | exon | 35706639 | 35706711 | 35706639 | ID=MS.gene41235.t1.exon1;Parent=MS.gene41235.t1 |
| chr1.4 | CDS | 35706639 | 35706711 | 35706639 | ID=cds.MS.gene41235.t1;Parent=MS.gene41235.t1 |
| chr1.4 | exon | 35704681 | 35704898 | 35704681 | ID=MS.gene41235.t1.exon2;Parent=MS.gene41235.t1 |
| chr1.4 | CDS | 35704681 | 35704898 | 35704681 | ID=cds.MS.gene41235.t1;Parent=MS.gene41235.t1 |
| Gene Sequence |
| Protein sequence |
