Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41879.t1 | XP_003624853.1 | 96.2 | 239 | 9 | 0 | 1 | 239 | 1 | 239 | 8.70E-124 | 453 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41879.t1 | Q9M1K3 | 62.3 | 231 | 85 | 2 | 10 | 239 | 8 | 237 | 1.1e-79 | 297.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41879.t1 | B7FN52 | 96.2 | 239 | 9 | 0 | 1 | 239 | 1 | 239 | 6.3e-124 | 453.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene41879 | 0.819451 | 1.15E-52 | -1.69E-46 |
| MS.gene049254 | MS.gene41879 | 0.831444 | 1.66E-55 | -1.69E-46 |
| MS.gene049350 | MS.gene41879 | 0.819769 | 9.76E-53 | -1.69E-46 |
| MS.gene049711 | MS.gene41879 | 0.821523 | 3.86E-53 | -1.69E-46 |
| MS.gene049807 | MS.gene41879 | 0.81056 | 1.09E-50 | -1.69E-46 |
| MS.gene050559 | MS.gene41879 | 0.80445 | 2.15E-49 | -1.69E-46 |
| MS.gene051332 | MS.gene41879 | 0.81714 | 3.85E-52 | -1.69E-46 |
| MS.gene051744 | MS.gene41879 | 0.813215 | 2.86E-51 | -1.69E-46 |
| MS.gene052533 | MS.gene41879 | 0.803802 | 2.93E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene41879 | 0.810649 | 1.04E-50 | -1.69E-46 |
| MS.gene054479 | MS.gene41879 | 0.802824 | 4.67E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene41879 | 0.804746 | 1.86E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene41879 | 0.807317 | 5.36E-50 | -1.69E-46 |
| MS.gene055586 | MS.gene41879 | 0.802051 | 6.74E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene41879 | 0.810007 | 1.43E-50 | -1.69E-46 |
| MS.gene056699 | MS.gene41879 | 0.837343 | 5.50E-57 | -1.69E-46 |
| MS.gene057102 | MS.gene41879 | 0.843273 | 1.55E-58 | -1.69E-46 |
| MS.gene057208 | MS.gene41879 | 0.809522 | 1.81E-50 | -1.69E-46 |
| MS.gene058355 | MS.gene41879 | 0.811561 | 6.58E-51 | -1.69E-46 |
| MS.gene05985 | MS.gene41879 | -0.832915 | 7.20E-56 | -1.69E-46 |
| MS.gene059965 | MS.gene41879 | 0.803665 | 3.13E-49 | -1.69E-46 |
| MS.gene060777 | MS.gene41879 | 0.806942 | 6.44E-50 | -1.69E-46 |
| MS.gene060932 | MS.gene41879 | 0.806526 | 7.88E-50 | -1.69E-46 |
| MS.gene060935 | MS.gene41879 | 0.810807 | 9.59E-51 | -1.69E-46 |
| MS.gene060937 | MS.gene41879 | 0.81358 | 2.38E-51 | -1.69E-46 |
| MS.gene061188 | MS.gene41879 | 0.833218 | 6.05E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41879.t1 | MTR_7g088310 | 96.234 | 239 | 9 | 0 | 1 | 239 | 1 | 239 | 4.29e-169 | 466 |
| MS.gene41879.t1 | MTR_4g049340 | 38.000 | 150 | 87 | 3 | 87 | 231 | 90 | 238 | 4.29e-25 | 99.4 |
| MS.gene41879.t1 | MTR_6g033010 | 30.705 | 241 | 131 | 6 | 10 | 226 | 9 | 237 | 3.96e-24 | 97.1 |
| MS.gene41879.t1 | MTR_7g085070 | 33.755 | 237 | 140 | 8 | 10 | 231 | 10 | 244 | 8.08e-24 | 96.3 |
| MS.gene41879.t1 | MTR_6g033010 | 30.653 | 199 | 100 | 8 | 10 | 183 | 9 | 194 | 1.85e-13 | 67.4 |
| MS.gene41879.t1 | MTR_6g033010 | 30.653 | 199 | 100 | 8 | 10 | 183 | 9 | 194 | 5.57e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41879.t1 | AT3G56950 | 62.338 | 231 | 85 | 2 | 10 | 239 | 8 | 237 | 3.13e-104 | 301 |
| MS.gene41879.t1 | AT3G56950 | 62.338 | 231 | 85 | 2 | 10 | 239 | 8 | 237 | 5.69e-104 | 301 |
| MS.gene41879.t1 | AT3G04090 | 35.461 | 141 | 86 | 2 | 87 | 223 | 87 | 226 | 6.91e-17 | 77.4 |
| MS.gene41879.t1 | AT5G18290 | 27.542 | 236 | 149 | 7 | 12 | 231 | 10 | 239 | 2.47e-16 | 75.9 |
| MS.gene41879.t1 | AT5G18290 | 27.542 | 236 | 149 | 7 | 12 | 231 | 10 | 239 | 2.47e-16 | 75.9 |
Find 58 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATTCGTCTTCAAAATTCT+TGG | 0.243461 | 7.2:-20358761 | MS.gene41879:CDS |
| CGAAAATAGTTGCCTCTATA+GGG | 0.253238 | 7.2:+20355359 | None:intergenic |
| AGGAACACATCCTTGTTTAC+TGG | 0.291486 | 7.2:-20355387 | MS.gene41879:CDS |
| TTCTATCTTTCTTGTGGGTA+TGG | 0.320623 | 7.2:-20358802 | MS.gene41879:CDS |
| GCGAAAATAGTTGCCTCTAT+AGG | 0.326073 | 7.2:+20355358 | None:intergenic |
| TATTGACATGTTCAGGTAAT+GGG | 0.328570 | 7.2:-20355442 | MS.gene41879:intron |
| TATTAATCCCATCAGGTGTT+TGG | 0.370566 | 7.2:-20355805 | MS.gene41879:intron |
| CGCGGTCCCTGTCCTACTTC+GGG | 0.374648 | 7.2:+20355745 | None:intergenic |
| CAGGTGTTTGGATCTATTGT+TGG | 0.377920 | 7.2:-20355793 | MS.gene41879:CDS |
| TTTGAATGTTGACATTCATC+AGG | 0.394171 | 7.2:-20355722 | MS.gene41879:CDS |
| GATGGAACGACGAAGTAGTT+TGG | 0.401724 | 7.2:-20358843 | MS.gene41879:CDS |
| TTGCCAAAGTTTCTCGTGGT+GGG | 0.420248 | 7.2:-20358664 | MS.gene41879:CDS |
| AAGTGTTAACTTGGAGAGGC+TGG | 0.451033 | 7.2:+20355597 | None:intergenic |
| AAGTTAACACTTCATATACT+TGG | 0.461419 | 7.2:-20355586 | MS.gene41879:CDS |
| GACCCCACCACGAGAAACTT+TGG | 0.464214 | 7.2:+20358661 | None:intergenic |
| TTACTGGCTTGCCCCTATAG+AGG | 0.464558 | 7.2:-20355371 | MS.gene41879:CDS |
| ACGCGGTCCCTGTCCTACTT+CGG | 0.466726 | 7.2:+20355744 | None:intergenic |
| TGCTTTCAGAATTCCTGCTC+AGG | 0.468353 | 7.2:-20358573 | MS.gene41879:intron |
| TCTTTCTTGTGGGTATGGTC+TGG | 0.485815 | 7.2:-20358797 | MS.gene41879:CDS |
| TCTTTACAATCTCGCCGATA+GGG | 0.487656 | 7.2:+20358726 | None:intergenic |
| TACCATTCCCGAAGTAGGAC+AGG | 0.491255 | 7.2:-20355752 | MS.gene41879:CDS |
| TTCTGAAAGCAACACAGAAA+AGG | 0.497664 | 7.2:+20358585 | None:intergenic |
| ATTGATACCATTCCCGAAGT+AGG | 0.499692 | 7.2:-20355757 | MS.gene41879:CDS |
| AGGTTCAGAATTACCTGAGC+AGG | 0.503453 | 7.2:+20358560 | None:intergenic |
| ACAACAGTACTTACAGCTGC+GGG | 0.513240 | 7.2:+20355535 | None:intergenic |
| CTTGCCAAAGTTTCTCGTGG+TGG | 0.513744 | 7.2:-20358665 | MS.gene41879:CDS |
| TGCCAAAGTTTCTCGTGGTG+GGG | 0.514080 | 7.2:-20358663 | MS.gene41879:CDS |
| GAAATTTCTTCATGAAGACT+TGG | 0.517517 | 7.2:-20355624 | MS.gene41879:CDS |
| TTCCTTGCCAAAGTTTCTCG+TGG | 0.539089 | 7.2:-20358668 | MS.gene41879:CDS |
| AAGTATATGAAGTGTTAACT+TGG | 0.539530 | 7.2:+20355588 | None:intergenic |
| TCCCTGTCCTACTTCGGGAA+TGG | 0.542268 | 7.2:+20355750 | None:intergenic |
| ATCTTTACAATCTCGCCGAT+AGG | 0.544528 | 7.2:+20358725 | None:intergenic |
| ACATGTTCAGGTAATGGGAT+GGG | 0.544677 | 7.2:-20355437 | MS.gene41879:intron |
| GCAATTGTAAGCATTTCACT+TGG | 0.559581 | 7.2:-20355670 | MS.gene41879:CDS |
| ATGGGATGGGCTTATGCTCG+AGG | 0.561401 | 7.2:-20355424 | MS.gene41879:CDS |
| TGGGATGGGCTTATGCTCGA+GGG | 0.562784 | 7.2:-20355423 | MS.gene41879:CDS |
| CTTTACAATCTCGCCGATAG+GGG | 0.572023 | 7.2:+20358727 | None:intergenic |
| TGCGGGGTTCATACAACCAC+CGG | 0.572841 | 7.2:+20355552 | None:intergenic |
| CATCAGGGAGCATTAACAGA+AGG | 0.579352 | 7.2:-20355706 | MS.gene41879:CDS |
| CAATTGTAAGCATTTCACTT+GGG | 0.591125 | 7.2:-20355669 | MS.gene41879:CDS |
| GACATGTTCAGGTAATGGGA+TGG | 0.594916 | 7.2:-20355438 | MS.gene41879:intron |
| AAACAAGAACATGTTGAGGA+TGG | 0.600692 | 7.2:+20358694 | None:intergenic |
| TTGTCTGATGCTATCTCTCG+TGG | 0.601098 | 7.2:-20358620 | MS.gene41879:CDS |
| TTGAATGTTGACATTCATCA+GGG | 0.603420 | 7.2:-20355721 | MS.gene41879:CDS |
| TAGGGGCAAGCCAGTAAACA+AGG | 0.604165 | 7.2:+20355377 | None:intergenic |
| TATGAAGTGTTAACTTGGAG+AGG | 0.604810 | 7.2:+20355593 | None:intergenic |
| ATACTTGGTTCTGATCTGAC+CGG | 0.615126 | 7.2:-20355571 | MS.gene41879:CDS |
| GCATCAGACAAAACAGTGAG+AGG | 0.620218 | 7.2:+20358632 | None:intergenic |
| AAGCAAACAAGAACATGTTG+AGG | 0.623346 | 7.2:+20358690 | None:intergenic |
| GAAAATAGTTGCCTCTATAG+GGG | 0.627983 | 7.2:+20355360 | None:intergenic |
| TACAACAGTACTTACAGCTG+CGG | 0.633608 | 7.2:+20355534 | None:intergenic |
| CACCACGAGAAACTTTGGCA+AGG | 0.654727 | 7.2:+20358666 | None:intergenic |
| ACCATTCCCGAAGTAGGACA+GGG | 0.659470 | 7.2:-20355751 | MS.gene41879:CDS |
| CTTGGTTCTGATCTGACCGG+TGG | 0.665509 | 7.2:-20355568 | MS.gene41879:CDS |
| GGGATGGGCTTATGCTCGAG+GGG | 0.671783 | 7.2:-20355422 | MS.gene41879:CDS |
| TCGAGGGGATCACATAACAA+AGG | 0.700357 | 7.2:-20355407 | MS.gene41879:CDS |
| CAACAGTACTTACAGCTGCG+GGG | 0.746373 | 7.2:+20355536 | None:intergenic |
| TGAATGTCAACATTCAAACG+CGG | 0.764386 | 7.2:+20355727 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAATAATCCTTGAAAT+GGG | - | chr7.2:20357069-20357088 | MS.gene41879:intron | 15.0% |
| !!! | ATTAAATCTCTTAATAGTTT+TGG | - | chr7.2:20355808-20355827 | MS.gene41879:intron | 15.0% |
| !!! | CATTGTTTTTTTATTTTTAC+TGG | - | chr7.2:20355666-20355685 | MS.gene41879:CDS | 15.0% |
| !! | AACTATTTGTAGTGATTTAA+AGG | - | chr7.2:20357755-20357774 | MS.gene41879:intron | 20.0% |
| !! | AATAAAATTGCAGGAAAATA+AGG | - | chr7.2:20356095-20356114 | MS.gene41879:intron | 20.0% |
| !! | ATTGTATGAAATAAAATTGC+AGG | - | chr7.2:20356086-20356105 | MS.gene41879:intron | 20.0% |
| !! | GAATTAAATAATCCTTGAAA+TGG | - | chr7.2:20357068-20357087 | MS.gene41879:intron | 20.0% |
| !! | GTTAAATATCCAAAACTAAT+TGG | + | chr7.2:20356716-20356735 | None:intergenic | 20.0% |
| !! | GTTGTACAAGTTTATTATAA+AGG | - | chr7.2:20357319-20357338 | MS.gene41879:intron | 20.0% |
| !! | TTCTTATAAAAAAGACAAGA+AGG | + | chr7.2:20355602-20355621 | None:intergenic | 20.0% |
| !!! | ATTGATTATCAGATATTTTC+TGG | - | chr7.2:20356812-20356831 | MS.gene41879:intron | 20.0% |
| !!! | TTTATTTTTACTGGTCAAAA+AGG | - | chr7.2:20355675-20355694 | MS.gene41879:CDS | 20.0% |
| ! | AAAGTAACTACAGATAAACT+CGG | + | chr7.2:20358620-20358639 | None:intergenic | 25.0% |
| ! | AAGTTAACACTTCATATACT+TGG | - | chr7.2:20358541-20358560 | MS.gene41879:intron | 25.0% |
| ! | CATTATGGATAATAGGAATA+TGG | + | chr7.2:20356212-20356231 | None:intergenic | 25.0% |
| ! | CCAAATATCTCTCAATTTAT+TGG | + | chr7.2:20356268-20356287 | None:intergenic | 25.0% |
| ! | CCAATAAATTGAGAGATATT+TGG | - | chr7.2:20356265-20356284 | MS.gene41879:intron | 25.0% |
| ! | TATAAATATGAGAAAAGCCA+AGG | + | chr7.2:20356185-20356204 | None:intergenic | 25.0% |
| ! | TATTGTTTGTGGAATATTTG+TGG | - | chr7.2:20356673-20356692 | MS.gene41879:intron | 25.0% |
| ! | TCACTTTGATATATATAGCT+TGG | - | chr7.2:20355734-20355753 | MS.gene41879:CDS | 25.0% |
| ! | TTATTCGTCTTCAAAATTCT+TGG | - | chr7.2:20355366-20355385 | MS.gene41879:CDS | 25.0% |
| !! | AAGTATATGAAGTGTTAACT+TGG | + | chr7.2:20358542-20358561 | None:intergenic | 25.0% |
| !! | ATTTCCATGAATTTTTGTTG+TGG | + | chr7.2:20358488-20358507 | None:intergenic | 25.0% |
| !! | ATTTTGTTCTATCTTTCTTG+TGG | - | chr7.2:20355319-20355338 | MS.gene41879:CDS | 25.0% |
| !! | CTACATACTAGATTTTTGAA+AGG | - | chr7.2:20357110-20357129 | MS.gene41879:intron | 25.0% |
| !! | TGGCTTTTCTCATATTTATA+AGG | - | chr7.2:20356185-20356204 | MS.gene41879:intron | 25.0% |
| !! | TTTTGTTCTATCTTTCTTGT+GGG | - | chr7.2:20355320-20355339 | MS.gene41879:CDS | 25.0% |
| !!! | ATCTCTTAATAGTTTTGGAT+TGG | - | chr7.2:20355813-20355832 | MS.gene41879:intron | 25.0% |
| !!! | CTCAGAATTTGTTAAAAACA+TGG | - | chr7.2:20357612-20357631 | MS.gene41879:intron | 25.0% |
| AAATTCTAGACACCTAATCT+AGG | + | chr7.2:20357567-20357586 | None:intergenic | 30.0% | |
| AATATCACAAGTCATTGTCT+TGG | - | chr7.2:20356359-20356378 | MS.gene41879:intron | 30.0% | |
| AATGAGTCTTAGAGTTAGAA+GGG | + | chr7.2:20356236-20356255 | None:intergenic | 30.0% | |
| AGAATTTGACTGCCTAATAT+TGG | - | chr7.2:20357580-20357599 | MS.gene41879:intron | 30.0% | |
| AGATCTTTATTGACATGTTC+AGG | - | chr7.2:20358678-20358697 | MS.gene41879:CDS | 30.0% | |
| AGGAACCAAATACTTTCATT+TGG | + | chr7.2:20356998-20357017 | None:intergenic | 30.0% | |
| ATATTCCATGCTTATTTCCT+TGG | - | chr7.2:20356165-20356184 | MS.gene41879:intron | 30.0% | |
| CAATTGTAAGCATTTCACTT+GGG | - | chr7.2:20358458-20358477 | MS.gene41879:intron | 30.0% | |
| GAAATTTCTTCATGAAGACT+TGG | - | chr7.2:20358503-20358522 | MS.gene41879:intron | 30.0% | |
| GAGACATAAACACCAATATT+AGG | + | chr7.2:20357595-20357614 | None:intergenic | 30.0% | |
| GAGTTTATCTGTAGTTACTT+TGG | - | chr7.2:20358619-20358638 | MS.gene41879:CDS | 30.0% | |
| GATTGTCATTCTAATATGCA+TGG | - | chr7.2:20358299-20358318 | MS.gene41879:intron | 30.0% | |
| GGAACCAAATACTTTCATTT+GGG | + | chr7.2:20356997-20357016 | None:intergenic | 30.0% | |
| TAATGAGTCTTAGAGTTAGA+AGG | + | chr7.2:20356237-20356256 | None:intergenic | 30.0% | |
| TATTGACATGTTCAGGTAAT+GGG | - | chr7.2:20358685-20358704 | MS.gene41879:CDS | 30.0% | |
| TGAATTGATCTATCACGAAT+TGG | - | chr7.2:20356783-20356802 | MS.gene41879:intron | 30.0% | |
| TGGAACATGTATATTGTTTG+TGG | - | chr7.2:20356662-20356681 | MS.gene41879:intron | 30.0% | |
| TGGTTGAGATGCATAAAAAA+AGG | + | chr7.2:20358244-20358263 | None:intergenic | 30.0% | |
| TTACTTTGGTATCATAGCTT+TGG | - | chr7.2:20358633-20358652 | MS.gene41879:CDS | 30.0% | |
| TTATTGACATGTTCAGGTAA+TGG | - | chr7.2:20358684-20358703 | MS.gene41879:CDS | 30.0% | |
| TTGAATGTTGACATTCATCA+GGG | - | chr7.2:20358406-20358425 | MS.gene41879:intron | 30.0% | |
| TTTGAATGTTGACATTCATC+AGG | - | chr7.2:20358405-20358424 | MS.gene41879:intron | 30.0% | |
| ! | ACTGTTTTCTGTTCTATAAC+AGG | + | chr7.2:20358823-20358842 | None:intergenic | 30.0% |
| ! | GATTATCAGATATTTTCTGG+AGG | - | chr7.2:20356815-20356834 | MS.gene41879:intron | 30.0% |
| ! | TCATAATCGAGATGTTACTT+AGG | + | chr7.2:20357926-20357945 | None:intergenic | 30.0% |
| ! | TGCTCATTTGTTAATGCAAT+TGG | - | chr7.2:20356642-20356661 | MS.gene41879:intron | 30.0% |
| ! | TTTTCTGTTCTATAACAGGT+CGG | + | chr7.2:20358819-20358838 | None:intergenic | 30.0% |
| !! | AAGTTTTGTACTGCATACTT+TGG | - | chr7.2:20356313-20356332 | MS.gene41879:intron | 30.0% |
| !! | ACAAGGATACCAATTAGTTT+TGG | - | chr7.2:20356704-20356723 | MS.gene41879:intron | 30.0% |
| !! | ACTCTAAGACTCATTACAAT+TGG | - | chr7.2:20356241-20356260 | MS.gene41879:intron | 30.0% |
| !! | GATTTTTGAAAGGCTGATAT+TGG | - | chr7.2:20357120-20357139 | MS.gene41879:intron | 30.0% |
| !! | TTGCAAGATCTTTTGATTCA+TGG | - | chr7.2:20357868-20357887 | MS.gene41879:intron | 30.0% |
| !!! | GTGATTTTAACTCCTAGATT+AGG | - | chr7.2:20357552-20357571 | MS.gene41879:intron | 30.0% |
| AAAAGCCAAGGAAATAAGCA+TGG | + | chr7.2:20356173-20356192 | None:intergenic | 35.0% | |
| AAACAAGAACATGTTGAGGA+TGG | + | chr7.2:20355436-20355455 | None:intergenic | 35.0% | |
| AACAAAACATTATGCATCCC+TGG | + | chr7.2:20358195-20358214 | None:intergenic | 35.0% | |
| AAGCAAACAAGAACATGTTG+AGG | + | chr7.2:20355440-20355459 | None:intergenic | 35.0% | |
| AATAGATCCAAACACCTGAT+GGG | + | chr7.2:20358332-20358351 | None:intergenic | 35.0% | |
| AATTGGTATCCTTGTAGTCT+AGG | + | chr7.2:20356699-20356718 | None:intergenic | 35.0% | |
| AGACAAGAAGGAGAAAAAGA+AGG | + | chr7.2:20355590-20355609 | None:intergenic | 35.0% | |
| AGTGATAAATGTTGCGAGAT+TGG | - | chr7.2:20355983-20356002 | MS.gene41879:intron | 35.0% | |
| ATAGAATCACAGCAATGCTT+AGG | - | chr7.2:20358121-20358140 | MS.gene41879:intron | 35.0% | |
| ATATGTACACCAAAGACAGA+GGG | - | chr7.2:20357035-20357054 | MS.gene41879:intron | 35.0% | |
| ATGAGTCTTAGAGTTAGAAG+GGG | + | chr7.2:20356235-20356254 | None:intergenic | 35.0% | |
| ATGGTACTCGTAAGATCAAT+CGG | - | chr7.2:20357495-20357514 | MS.gene41879:intron | 35.0% | |
| ATTATGACTACCAGTGTTAG+GGG | - | chr7.2:20357939-20357958 | MS.gene41879:intron | 35.0% | |
| ATTTCCGAATAGTGCATACA+AGG | - | chr7.2:20356403-20356422 | MS.gene41879:intron | 35.0% | |
| CATTTGAGAAGTTGTAAGAG+TGG | - | chr7.2:20355883-20355902 | MS.gene41879:intron | 35.0% | |
| CGAAAATAGTTGCCTCTATA+GGG | + | chr7.2:20358771-20358790 | None:intergenic | 35.0% | |
| CTTGAAGCTTCAACTATTCT+TGG | - | chr7.2:20358077-20358096 | MS.gene41879:intron | 35.0% | |
| CTTGCCACAACAAAAATTCA+TGG | - | chr7.2:20358481-20358500 | MS.gene41879:intron | 35.0% | |
| CTTTCCTTGTATGCACTATT+CGG | + | chr7.2:20356410-20356429 | None:intergenic | 35.0% | |
| GAAAATAGTTGCCTCTATAG+GGG | + | chr7.2:20358770-20358789 | None:intergenic | 35.0% | |
| GATTATGACTACCAGTGTTA+GGG | - | chr7.2:20357938-20357957 | MS.gene41879:intron | 35.0% | |
| GCAATTGTAAGCATTTCACT+TGG | - | chr7.2:20358457-20358476 | MS.gene41879:intron | 35.0% | |
| GGATAGTAAAATGAGAGAAG+AGG | - | chr7.2:20356116-20356135 | MS.gene41879:intron | 35.0% | |
| GTAAAATGAGAGAAGAGGTT+AGG | - | chr7.2:20356121-20356140 | MS.gene41879:intron | 35.0% | |
| GTAGTCATACAAAACAGTAC+AGG | - | chr7.2:20355853-20355872 | MS.gene41879:intron | 35.0% | |
| TATTAATCCCATCAGGTGTT+TGG | - | chr7.2:20358322-20358341 | MS.gene41879:intron | 35.0% | |
| TCCTAAAAGATGCACGAAAA+AGG | - | chr7.2:20357226-20357245 | MS.gene41879:intron | 35.0% | |
| TCGAGTCTTTAACAAAACAC+TGG | + | chr7.2:20357146-20357165 | None:intergenic | 35.0% | |
| TCGCAACATTTATCACTTCA+TGG | + | chr7.2:20355980-20355999 | None:intergenic | 35.0% | |
| TGAATGTCAACATTCAAACG+CGG | + | chr7.2:20358403-20358422 | None:intergenic | 35.0% | |
| TGACACAGGATTAATGTCAT+GGG | - | chr7.2:20357285-20357304 | MS.gene41879:intron | 35.0% | |
| TGAGATCTGATAAAAAGAGC+AGG | + | chr7.2:20356936-20356955 | None:intergenic | 35.0% | |
| TTCTATCTTTCTTGTGGGTA+TGG | - | chr7.2:20355325-20355344 | MS.gene41879:CDS | 35.0% | |
| ! | ATCGAGATGTTACTTAGGAT+TGG | + | chr7.2:20357921-20357940 | None:intergenic | 35.0% |
| ! | ATGACTTGTGATATTGAGAC+AGG | + | chr7.2:20356354-20356373 | None:intergenic | 35.0% |
| ! | ATGTTACTTAGGATTGGGAA+GGG | + | chr7.2:20357915-20357934 | None:intergenic | 35.0% |
| ! | GGATTTTATCATACCCCTAT+CGG | - | chr7.2:20355387-20355406 | MS.gene41879:CDS | 35.0% |
| ! | GTGTTATGTATTTTCGTCTC+TGG | - | chr7.2:20357634-20357653 | MS.gene41879:intron | 35.0% |
| ! | TATGAAGTGTTAACTTGGAG+AGG | + | chr7.2:20358537-20358556 | None:intergenic | 35.0% |
| ! | TCGAGATGTTACTTAGGATT+GGG | + | chr7.2:20357920-20357939 | None:intergenic | 35.0% |
| ! | TGTCTTTGGTGTACATATGT+GGG | + | chr7.2:20357033-20357052 | None:intergenic | 35.0% |
| ! | TTCTGAAAGCAACACAGAAA+AGG | + | chr7.2:20355545-20355564 | None:intergenic | 35.0% |
| !! | CTGTCCCAAATGAAAGTATT+TGG | - | chr7.2:20356990-20357009 | MS.gene41879:intron | 35.0% |
| !! | TCCTTTTTCGTGCATCTTTT+AGG | + | chr7.2:20357230-20357249 | None:intergenic | 35.0% |
| !! | TGGAGGTATTTATCAAGTTG+AGG | - | chr7.2:20356832-20356851 | MS.gene41879:intron | 35.0% |
| !!! | CATCTTTTAGGATGTAGTAG+AGG | + | chr7.2:20357218-20357237 | None:intergenic | 35.0% |
| !!! | GGTTTTTTCGTTGTTTGTGT+TGG | - | chr7.2:20357776-20357795 | MS.gene41879:intron | 35.0% |
| AACAAATGAGCAGACATGCA+AGG | + | chr7.2:20356634-20356653 | None:intergenic | 40.0% | |
| ACAAATGAGCAGACATGCAA+GGG | + | chr7.2:20356633-20356652 | None:intergenic | 40.0% | |
| ACAATCACACAGTCATGTTC+AGG | - | chr7.2:20356565-20356584 | MS.gene41879:intron | 40.0% | |
| AGCTTCAACTATTCTTGGTC+TGG | - | chr7.2:20358082-20358101 | MS.gene41879:intron | 40.0% | |
| ATCACAAGTCATTGTCTTGG+AGG | - | chr7.2:20356362-20356381 | MS.gene41879:intron | 40.0% | |
| ATCTTTACAATCTCGCCGAT+AGG | + | chr7.2:20355405-20355424 | None:intergenic | 40.0% | |
| ATTGATACCATTCCCGAAGT+AGG | - | chr7.2:20358370-20358389 | MS.gene41879:intron | 40.0% | |
| ATTGCAATTGTGCCTGTGAT+TGG | + | chr7.2:20357446-20357465 | None:intergenic | 40.0% | |
| CAATAGATCCAAACACCTGA+TGG | + | chr7.2:20358333-20358352 | None:intergenic | 40.0% | |
| CAATCACACAGTCATGTTCA+GGG | - | chr7.2:20356566-20356585 | MS.gene41879:intron | 40.0% | |
| CACTTACCAATCAACCTGTT+AGG | - | chr7.2:20356954-20356973 | MS.gene41879:intron | 40.0% | |
| CAGGTGTTTGGATCTATTGT+TGG | - | chr7.2:20358334-20358353 | MS.gene41879:intron | 40.0% | |
| CATATGTACACCAAAGACAG+AGG | - | chr7.2:20357034-20357053 | MS.gene41879:intron | 40.0% | |
| CCTCAAATATCGCAAGATCA+CGG | + | chr7.2:20357411-20357430 | None:intergenic | 40.0% | |
| CGATTATGACTACCAGTGTT+AGG | - | chr7.2:20357937-20357956 | MS.gene41879:intron | 40.0% | |
| GAATCACAATGTAGCCTAAC+AGG | + | chr7.2:20356971-20356990 | None:intergenic | 40.0% | |
| GATTGATCTTACGAGTACCA+TGG | + | chr7.2:20357496-20357515 | None:intergenic | 40.0% | |
| GCGAAAATAGTTGCCTCTAT+AGG | + | chr7.2:20358772-20358791 | None:intergenic | 40.0% | |
| GTGACACAGGATTAATGTCA+TGG | - | chr7.2:20357284-20357303 | MS.gene41879:intron | 40.0% | |
| GTTCGAGACATTCATGTCAT+TGG | + | chr7.2:20358264-20358283 | None:intergenic | 40.0% | |
| TAAAATATCCAGCCATGCCA+AGG | + | chr7.2:20358038-20358057 | None:intergenic | 40.0% | |
| TACAACAGTACTTACAGCTG+CGG | + | chr7.2:20358596-20358615 | None:intergenic | 40.0% | |
| TAGATTTGAACCCCTAACAC+TGG | + | chr7.2:20357952-20357971 | None:intergenic | 40.0% | |
| TATTTGTGGCCTAGACTACA+AGG | - | chr7.2:20356687-20356706 | MS.gene41879:intron | 40.0% | |
| TCTTTACAATCTCGCCGATA+GGG | + | chr7.2:20355404-20355423 | None:intergenic | 40.0% | |
| TGATAGAGTCTCGTCTTAGA+TGG | - | chr7.2:20355924-20355943 | MS.gene41879:intron | 40.0% | |
| TGCATGGTATTAATCCCATC+AGG | - | chr7.2:20358315-20358334 | MS.gene41879:intron | 40.0% | |
| TTGAAGCAATATACTCCCTC+AGG | + | chr7.2:20355702-20355721 | None:intergenic | 40.0% | |
| TTGCAATTGTGCCTGTGATT+GGG | + | chr7.2:20357445-20357464 | None:intergenic | 40.0% | |
| TTTGGTGGGATTGATGAGAT+TGG | - | chr7.2:20357530-20357549 | MS.gene41879:intron | 40.0% | |
| ! | AATCGGATTGACGAGTGTTT+TGG | - | chr7.2:20357512-20357531 | MS.gene41879:intron | 40.0% |
| ! | AGGAACACATCCTTGTTTAC+TGG | - | chr7.2:20358740-20358759 | MS.gene41879:CDS | 40.0% |
| ! | CACATGTACTGCGATTTTTG+TGG | + | chr7.2:20356765-20356784 | None:intergenic | 40.0% |
| ! | CTGTCTTTGGTGTACATATG+TGG | + | chr7.2:20357034-20357053 | None:intergenic | 40.0% |
| ! | GATGTTACTTAGGATTGGGA+AGG | + | chr7.2:20357916-20357935 | None:intergenic | 40.0% |
| ! | TGCTTGTGATTGATGATCCA+TGG | - | chr7.2:20357476-20357495 | MS.gene41879:intron | 40.0% |
| ! | TGTTACTTAGGATTGGGAAG+GGG | + | chr7.2:20357914-20357933 | None:intergenic | 40.0% |
| !! | ACATATACACTGGTGCTATG+GGG | + | chr7.2:20358156-20358175 | None:intergenic | 40.0% |
| !! | ACATGTTCAGGTAATGGGAT+GGG | - | chr7.2:20358690-20358709 | MS.gene41879:CDS | 40.0% |
| !! | ATACTTGGTTCTGATCTGAC+CGG | - | chr7.2:20358556-20358575 | MS.gene41879:intron | 40.0% |
| !! | ATGTAGCCTAACAGGTTGAT+TGG | + | chr7.2:20356963-20356982 | None:intergenic | 40.0% |
| !! | CACATATACACTGGTGCTAT+GGG | + | chr7.2:20358157-20358176 | None:intergenic | 40.0% |
| !! | GAAGGGGCATTATGGATAAT+AGG | + | chr7.2:20356219-20356238 | None:intergenic | 40.0% |
| !! | TAGAGTTAGAAGGGGCATTA+TGG | + | chr7.2:20356227-20356246 | None:intergenic | 40.0% |
| ACAACAGTACTTACAGCTGC+GGG | + | chr7.2:20358595-20358614 | None:intergenic | 45.0% | |
| ACCATCACATGCACCAATCA+AGG | + | chr7.2:20356867-20356886 | None:intergenic | 45.0% | |
| ACCTTGATTGGTGCATGTGA+TGG | - | chr7.2:20356863-20356882 | MS.gene41879:intron | 45.0% | |
| ACTAGCACAATCCCAATCAC+AGG | - | chr7.2:20357431-20357450 | MS.gene41879:intron | 45.0% | |
| ACTGGTCAAAAAGGACCTGA+GGG | - | chr7.2:20355684-20355703 | MS.gene41879:CDS | 45.0% | |
| AGGCACAATTGCAATCTGGT+AGG | - | chr7.2:20357451-20357470 | MS.gene41879:intron | 45.0% | |
| AGGTTCAGAATTACCTGAGC+AGG | + | chr7.2:20355570-20355589 | None:intergenic | 45.0% | |
| ATCACATGCACCAATCAAGG+TGG | + | chr7.2:20356864-20356883 | None:intergenic | 45.0% | |
| CAAGCGATTTGCCCATTTCA+AGG | + | chr7.2:20357083-20357102 | None:intergenic | 45.0% | |
| CATGTGATCGTATGTGACAC+AGG | - | chr7.2:20357271-20357290 | MS.gene41879:intron | 45.0% | |
| CCATAGCACCAGTGTATATG+TGG | - | chr7.2:20358155-20358174 | MS.gene41879:intron | 45.0% | |
| CCGTGATCTTGCGATATTTG+AGG | - | chr7.2:20357408-20357427 | MS.gene41879:intron | 45.0% | |
| CTGTGTCACATACGATCACA+TGG | + | chr7.2:20357273-20357292 | None:intergenic | 45.0% | |
| CTTGAAATGGGCAAATCGCT+TGG | - | chr7.2:20357081-20357100 | MS.gene41879:intron | 45.0% | |
| CTTTACAATCTCGCCGATAG+GGG | + | chr7.2:20355403-20355422 | None:intergenic | 45.0% | |
| GAGTGGATCTAGTTGTACTG+AGG | - | chr7.2:20355900-20355919 | MS.gene41879:intron | 45.0% | |
| GCATCAGACAAAACAGTGAG+AGG | + | chr7.2:20355498-20355517 | None:intergenic | 45.0% | |
| TACACCAAAGACAGAGGGAA+GGG | - | chr7.2:20357040-20357059 | MS.gene41879:intron | 45.0% | |
| TACTGGTCAAAAAGGACCTG+AGG | - | chr7.2:20355683-20355702 | MS.gene41879:CDS | 45.0% | |
| TATGTGGGACTGTGGACAAA+AGG | + | chr7.2:20357018-20357037 | None:intergenic | 45.0% | |
| TCACAGGCACAATTGCAATC+TGG | - | chr7.2:20357447-20357466 | MS.gene41879:intron | 45.0% | |
| TCACATCGCCACATATACAC+TGG | + | chr7.2:20358166-20358185 | None:intergenic | 45.0% | |
| TCGAGGGGATCACATAACAA+AGG | - | chr7.2:20358720-20358739 | MS.gene41879:CDS | 45.0% | |
| TCTAGTGAAACCCCTATCCT+TGG | - | chr7.2:20358018-20358037 | MS.gene41879:intron | 45.0% | |
| TCTTTCTTGTGGGTATGGTC+TGG | - | chr7.2:20355330-20355349 | MS.gene41879:CDS | 45.0% | |
| TGATTGGTGCATGTGATGGT+GGG | - | chr7.2:20356867-20356886 | MS.gene41879:intron | 45.0% | |
| TGCTTTCAGAATTCCTGCTC+AGG | - | chr7.2:20355554-20355573 | MS.gene41879:CDS | 45.0% | |
| TGTATATGTGGCGATGTGAG+AGG | - | chr7.2:20358167-20358186 | MS.gene41879:intron | 45.0% | |
| TTCCTTGCCAAAGTTTCTCG+TGG | - | chr7.2:20355459-20355478 | MS.gene41879:intron | 45.0% | |
| TTGATTGGTGCATGTGATGG+TGG | - | chr7.2:20356866-20356885 | MS.gene41879:intron | 45.0% | |
| TTGCCAAAGTTTCTCGTGGT+GGG | - | chr7.2:20355463-20355482 | MS.gene41879:intron | 45.0% | |
| TTGTCTGATGCTATCTCTCG+TGG | - | chr7.2:20355507-20355526 | MS.gene41879:intron | 45.0% | |
| ! | AAGTGTTAACTTGGAGAGGC+TGG | + | chr7.2:20358533-20358552 | None:intergenic | 45.0% |
| ! | AGGCAACTATTTTCGCAGTG+TGG | - | chr7.2:20358776-20358795 | MS.gene41879:CDS | 45.0% |
| ! | CCACATATACACTGGTGCTA+TGG | + | chr7.2:20358158-20358177 | None:intergenic | 45.0% |
| !! | CATCAGGGAGCATTAACAGA+AGG | - | chr7.2:20358421-20358440 | MS.gene41879:intron | 45.0% |
| !! | GACATGTTCAGGTAATGGGA+TGG | - | chr7.2:20358689-20358708 | MS.gene41879:CDS | 45.0% |
| !!! | GGATTGACGAGTGTTTTGGT+GGG | - | chr7.2:20357516-20357535 | MS.gene41879:intron | 45.0% |
| ACAGTCATGTTCAGGGTCAC+GGG | - | chr7.2:20356573-20356592 | MS.gene41879:intron | 50.0% | |
| ACCATTCCCGAAGTAGGACA+GGG | - | chr7.2:20358376-20358395 | MS.gene41879:intron | 50.0% | |
| AGTAGCAGTTGCCAAGCAAC+TGG | + | chr7.2:20356524-20356543 | None:intergenic | 50.0% | |
| ATCCAGCCATGCCAAGGATA+GGG | + | chr7.2:20358032-20358051 | None:intergenic | 50.0% | |
| CAACAGTACTTACAGCTGCG+GGG | + | chr7.2:20358594-20358613 | None:intergenic | 50.0% | |
| CACAGTCATGTTCAGGGTCA+CGG | - | chr7.2:20356572-20356591 | MS.gene41879:intron | 50.0% | |
| CACCACGAGAAACTTTGGCA+AGG | + | chr7.2:20355464-20355483 | None:intergenic | 50.0% | |
| CTTGCCAAAGTTTCTCGTGG+TGG | - | chr7.2:20355462-20355481 | MS.gene41879:intron | 50.0% | |
| GGTGTACATATGTGGGACTG+TGG | + | chr7.2:20357026-20357045 | None:intergenic | 50.0% | |
| GTACACCAAAGACAGAGGGA+AGG | - | chr7.2:20357039-20357058 | MS.gene41879:intron | 50.0% | |
| GTAGCAGTTGCCAAGCAACT+GGG | + | chr7.2:20356523-20356542 | None:intergenic | 50.0% | |
| TACCATTCCCGAAGTAGGAC+AGG | - | chr7.2:20358375-20358394 | MS.gene41879:intron | 50.0% | |
| TAGGGGCAAGCCAGTAAACA+AGG | + | chr7.2:20358753-20358772 | None:intergenic | 50.0% | |
| TATCCAGCCATGCCAAGGAT+AGG | + | chr7.2:20358033-20358052 | None:intergenic | 50.0% | |
| TGAAACCCCTATCCTTGGCA+TGG | - | chr7.2:20358023-20358042 | MS.gene41879:intron | 50.0% | |
| TGCCAAAGTTTCTCGTGGTG+GGG | - | chr7.2:20355464-20355483 | MS.gene41879:intron | 50.0% | |
| TGCCAAGCAACTGGGTATCT+AGG | + | chr7.2:20356515-20356534 | None:intergenic | 50.0% | |
| TGCCTAGATACCCAGTTGCT+TGG | - | chr7.2:20356510-20356529 | MS.gene41879:intron | 50.0% | |
| TTGGTCTGGCATGCATCAAC+AGG | - | chr7.2:20358096-20358115 | MS.gene41879:intron | 50.0% | |
| ! | GATTGGTGCATGTGATGGTG+GGG | - | chr7.2:20356868-20356887 | MS.gene41879:intron | 50.0% |
| !! | CGGATTGACGAGTGTTTTGG+TGG | - | chr7.2:20357515-20357534 | MS.gene41879:intron | 50.0% |
| !! | GAGGCATTGTCCACCTTGAT+TGG | - | chr7.2:20356851-20356870 | MS.gene41879:intron | 50.0% |
| !! | TTACTGGCTTGCCCCTATAG+AGG | - | chr7.2:20358756-20358775 | MS.gene41879:CDS | 50.0% |
| ACCAAAGACAGAGGGAAGGG+CGG | - | chr7.2:20357043-20357062 | MS.gene41879:intron | 55.0% | |
| GACCCCACCACGAGAAACTT+TGG | + | chr7.2:20355469-20355488 | None:intergenic | 55.0% | |
| TCCAGCCATGCCAAGGATAG+GGG | + | chr7.2:20358031-20358050 | None:intergenic | 55.0% | |
| TCCCTGTCCTACTTCGGGAA+TGG | + | chr7.2:20358380-20358399 | None:intergenic | 55.0% | |
| TGCGGGGTTCATACAACCAC+CGG | + | chr7.2:20358578-20358597 | None:intergenic | 55.0% | |
| TGGCGATGTGAGAGGAACCA+GGG | - | chr7.2:20358175-20358194 | MS.gene41879:intron | 55.0% | |
| ! | ATGGGATGGGCTTATGCTCG+AGG | - | chr7.2:20358703-20358722 | MS.gene41879:CDS | 55.0% |
| ! | TGGGATGGGCTTATGCTCGA+GGG | - | chr7.2:20358704-20358723 | MS.gene41879:CDS | 55.0% |
| !! | CTTGGTTCTGATCTGACCGG+TGG | - | chr7.2:20358559-20358578 | MS.gene41879:intron | 55.0% |
| ACCCCTATCCTTGGCATGGC+TGG | - | chr7.2:20358027-20358046 | MS.gene41879:intron | 60.0% | |
| ACCGCCCTTCCCTCTGTCTT+TGG | + | chr7.2:20357047-20357066 | None:intergenic | 60.0% | |
| ACGCGGTCCCTGTCCTACTT+CGG | + | chr7.2:20358386-20358405 | None:intergenic | 60.0% | |
| GCAGACATGCAAGGGCGACT+CGG | + | chr7.2:20356625-20356644 | None:intergenic | 60.0% | |
| GTGGCGATGTGAGAGGAACC+AGG | - | chr7.2:20358174-20358193 | MS.gene41879:intron | 60.0% | |
| ! | GGGATGGGCTTATGCTCGAG+GGG | - | chr7.2:20358705-20358724 | MS.gene41879:CDS | 60.0% |
| CGCGGTCCCTGTCCTACTTC+GGG | + | chr7.2:20358385-20358404 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 20355285 | 20358864 | 20355285 | ID=MS.gene41879 |
| chr7.2 | mRNA | 20355285 | 20358864 | 20355285 | ID=MS.gene41879.t1;Parent=MS.gene41879 |
| chr7.2 | exon | 20358574 | 20358864 | 20358574 | ID=MS.gene41879.t1.exon1;Parent=MS.gene41879.t1 |
| chr7.2 | CDS | 20358574 | 20358864 | 20358574 | ID=cds.MS.gene41879.t1;Parent=MS.gene41879.t1 |
| chr7.2 | exon | 20355549 | 20355812 | 20355549 | ID=MS.gene41879.t1.exon2;Parent=MS.gene41879.t1 |
| chr7.2 | CDS | 20355549 | 20355812 | 20355549 | ID=cds.MS.gene41879.t1;Parent=MS.gene41879.t1 |
| chr7.2 | exon | 20355285 | 20355449 | 20355285 | ID=MS.gene41879.t1.exon3;Parent=MS.gene41879.t1 |
| chr7.2 | CDS | 20355285 | 20355449 | 20355285 | ID=cds.MS.gene41879.t1;Parent=MS.gene41879.t1 |
| Gene Sequence |
| Protein sequence |
