AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene43716


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43716.t1 MTR_5g068860 95.538 493 19 1 1 490 19 511 0.0 931
MS.gene43716.t1 MTR_1g115415 53.250 400 185 1 82 481 71 468 6.15e-155 451
MS.gene43716.t1 MTR_8g105560 43.128 422 184 4 82 502 49 415 1.60e-112 345
MS.gene43716.t1 MTR_4g070060 27.606 355 249 4 115 463 235 587 1.42e-34 137
MS.gene43716.t1 MTR_4g084630 23.548 310 199 4 155 462 46 319 2.95e-31 124
MS.gene43716.t1 MTR_4g084630 23.182 220 160 3 120 330 43 262 6.48e-17 82.4
MS.gene43716.t1 MTR_2g034600 28.425 292 199 7 185 473 210 494 1.12e-29 122
MS.gene43716.t1 MTR_2g034600 21.986 282 171 7 118 354 211 488 3.23e-13 72.4
MS.gene43716.t1 MTR_2g034600 28.425 292 199 7 185 473 275 559 1.90e-29 122
MS.gene43716.t1 MTR_2g034600 21.986 282 171 7 118 354 276 553 3.00e-13 72.4
MS.gene43716.t1 MTR_2g034600 28.425 292 199 7 185 473 271 555 2.19e-29 122
MS.gene43716.t1 MTR_2g034600 21.986 282 171 7 118 354 272 549 3.55e-13 72.4
MS.gene43716.t1 MTR_5g094610 25.982 331 196 9 150 471 191 481 5.86e-25 108
MS.gene43716.t1 MTR_5g094610 24.153 236 166 5 113 340 221 451 4.75e-12 68.6
MS.gene43716.t1 MTR_6g003960 24.924 329 241 6 135 461 263 587 5.02e-23 103
MS.gene43716.t1 MTR_2g049780 25.379 264 156 7 202 463 82 306 4.47e-17 82.4
MS.gene43716.t1 MTR_5g041630 25.461 271 158 7 190 458 61 289 5.97e-14 73.2
MS.gene43716.t1 MTR_2g067230 23.022 278 167 6 190 466 73 304 1.08e-13 72.8
MS.gene43716.t1 MTR_7g081270 23.774 265 182 7 206 461 26 279 8.10e-12 66.2
MS.gene43716.t1 MTR_3g092710 22.604 407 266 14 98 461 91 491 3.36e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43716.t1 AT4G02990 72.473 465 119 2 34 489 55 519 0.0 675
MS.gene43716.t1 AT4G02990 72.473 465 119 2 34 489 55 519 0.0 675
MS.gene43716.t1 AT2G44020 49.876 403 200 1 82 484 76 476 2.89e-145 427
MS.gene43716.t1 AT2G21710 26.854 391 276 7 114 499 241 626 8.54e-40 153
MS.gene43716.t1 AT2G21710 24.460 278 194 6 81 343 274 550 9.81e-18 87.0
MS.gene43716.t1 AT4G38160 24.638 276 205 3 198 470 54 329 2.08e-32 127
MS.gene43716.t1 AT4G38160 20.705 227 167 5 116 330 39 264 2.40e-14 74.7
MS.gene43716.t1 AT4G38160 24.638 276 205 3 198 470 54 329 2.08e-32 127
MS.gene43716.t1 AT4G38160 20.705 227 167 5 116 330 39 264 2.40e-14 74.7
MS.gene43716.t1 AT4G38160 24.638 276 205 3 198 470 54 329 2.77e-32 127
MS.gene43716.t1 AT4G38160 20.705 227 167 5 116 330 39 264 1.91e-14 75.5
MS.gene43716.t1 AT4G38160 24.638 276 205 3 198 470 54 329 6.28e-32 126
MS.gene43716.t1 AT4G38160 20.705 227 167 5 116 330 39 264 4.07e-14 74.3
MS.gene43716.t1 AT4G14605 29.434 265 177 7 201 462 211 468 3.99e-27 114
MS.gene43716.t1 AT4G14605 29.434 265 177 7 201 462 211 468 3.99e-27 114
MS.gene43716.t1 AT2G21710 25.182 274 203 2 153 425 284 556 3.50e-26 112
MS.gene43716.t1 AT2G21710 24.460 278 194 6 81 343 274 550 1.41e-17 86.3
MS.gene43716.t1 AT2G21710 25.368 272 201 2 153 423 284 554 4.21e-26 112
MS.gene43716.t1 AT2G21710 24.460 278 194 6 81 343 274 550 1.05e-17 86.7
MS.gene43716.t1 AT1G78930 23.404 329 247 5 135 461 249 574 7.66e-25 108
MS.gene43716.t1 AT5G55580 23.529 306 223 7 143 443 38 337 4.98e-20 92.4
MS.gene43716.t1 AT5G55580 23.932 234 167 5 111 337 106 335 1.48e-12 69.7
MS.gene43716.t1 AT5G55580 24.036 337 242 9 143 471 144 474 1.40e-19 92.0
MS.gene43716.t1 AT5G55580 23.932 234 167 5 111 337 212 441 3.18e-12 69.3
MS.gene43716.t1 AT1G61970 25.843 356 245 9 127 473 61 406 4.07e-17 84.0
MS.gene43716.t1 AT1G61970 25.843 356 245 9 127 473 61 406 4.07e-17 84.0
MS.gene43716.t1 AT1G61970 25.843 356 245 9 127 473 61 406 4.07e-17 84.0
MS.gene43716.t1 AT1G61970 25.843 356 245 9 127 473 61 406 4.07e-17 84.0
MS.gene43716.t1 AT1G61970 25.843 356 245 9 127 473 61 406 4.07e-17 84.0
MS.gene43716.t1 AT1G61970 25.843 356 245 9 127 473 61 406 4.07e-17 84.0
MS.gene43716.t1 AT1G61970 25.843 356 245 9 127 473 61 406 4.07e-17 84.0
MS.gene43716.t1 AT2G34620 26.006 323 193 7 145 463 12 292 5.56e-17 82.0
MS.gene43716.t1 AT5G55580 23.711 194 141 4 151 340 185 375 6.56e-14 73.9
MS.gene43716.t1 AT1G62120 22.378 286 186 6 189 441 91 373 4.61e-13 71.6
MS.gene43716.t1 AT1G61980 22.930 314 201 9 189 464 87 397 1.64e-12 69.7
MS.gene43716.t1 AT1G61980 22.930 314 201 9 189 464 87 397 1.64e-12 69.7
MS.gene43716.t1 AT1G61980 22.930 314 201 9 189 464 87 397 1.64e-12 69.7
MS.gene43716.t1 AT3G18870 27.517 149 104 2 314 461 123 268 5.16e-12 67.0
MS.gene43716.t1 AT2G03050 24.510 204 149 5 265 465 71 272 3.10e-11 64.7
MS.gene43716.t1 AT2G03050 24.510 204 149 5 265 465 72 273 3.28e-11 64.7
MS.gene43716.t1 AT5G54180 24.051 395 232 11 94 466 145 493 5.90e-11 65.1

Find 128 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTAGATTCCCGGAGATTT+TGG 0.122651 5.1:-53531850 MS.gene43716:CDS
GCTTGATTACCTTGGTAAAT+TGG 0.181028 5.1:-53532120 MS.gene43716:CDS
GAGACACAACCTTATATTCT+TGG 0.218625 5.1:-53531741 MS.gene43716:CDS
AATTGCCATGTAATTGTATT+AGG 0.259846 5.1:-53532523 MS.gene43716:CDS
TTCCCAGCATTCTTCACTTA+TGG 0.279890 5.1:-53531315 MS.gene43716:CDS
GGAAAGGCCTTTGGTAGATT+TGG 0.285905 5.1:-53531343 MS.gene43716:CDS
TTATATTCTTGGATTCGATT+TGG 0.301999 5.1:-53531730 MS.gene43716:CDS
ACATCTGTTGCTTATTTGAT+TGG 0.305827 5.1:-53531909 MS.gene43716:CDS
GCTCAATTCTGTGCTTGATT+TGG 0.309060 5.1:-53531571 MS.gene43716:CDS
AGCATTCTTCACTTATGGTT+TGG 0.313050 5.1:-53531310 MS.gene43716:CDS
AGTTTGAATCCCAACACTTC+AGG 0.346326 5.1:+53531948 None:intergenic
GCCGGTGGTCAAGTATCTTC+AGG 0.347359 5.1:-53532018 MS.gene43716:CDS
TTCATAACATCAACCGTAAC+AGG 0.355753 5.1:+53532245 None:intergenic
GAATGACCAAATGTTAGAAT+TGG 0.365180 5.1:+53532575 None:intergenic
GGACTATGACACTATTGATA+TGG 0.372055 5.1:-53531184 MS.gene43716:CDS
GATTTGGATGTTGAGGATTT+CGG 0.372881 5.1:-53531555 MS.gene43716:CDS
AAGATTCAATGTTCTGTTGC+TGG 0.373247 5.1:-53532482 MS.gene43716:CDS
ACCTTGGTAAATTGGGAGTT+AGG 0.378790 5.1:-53532112 MS.gene43716:CDS
AAAATGCCAATTCTAACATT+TGG 0.379697 5.1:-53532581 MS.gene43716:CDS
CTTGATTACCTTGGTAAATT+GGG 0.382917 5.1:-53532119 MS.gene43716:CDS
AAATCGAATCCAAGAATATA+AGG 0.400009 5.1:+53531732 None:intergenic
ACCCGCATCCCCAAAATCTC+CGG 0.400611 5.1:+53531840 None:intergenic
TAACAACTATCCTCTTGTAC+TGG 0.404481 5.1:-53532174 MS.gene43716:CDS
TGGCGAAATTCAAAGGAAAC+GGG 0.417191 5.1:-53532402 MS.gene43716:CDS
AGGCATCTTAACTAGATTCC+CGG 0.419846 5.1:-53531859 MS.gene43716:CDS
TGATATGGAAGAGATGGAAA+TGG 0.426007 5.1:-53531169 MS.gene43716:CDS
TATGAGTTCTTGCGAGGAAT+CGG 0.426180 5.1:-53532302 MS.gene43716:CDS
ATGTAGTGTCAAGAAGAATA+TGG 0.433633 5.1:-53532150 MS.gene43716:CDS
GACCGGTGCTGCTGATTCGC+GGG 0.440005 5.1:-53532441 MS.gene43716:CDS
TATCTGCAAGCTTCGGCTCT+AGG 0.443828 5.1:+53531604 None:intergenic
GTAATTGTATTAGGAAGATA+AGG 0.444282 5.1:-53532514 MS.gene43716:CDS
GTGGAGTATCTGGAAAGCTT+GGG 0.446638 5.1:-53531795 MS.gene43716:CDS
GTTGCTTATTTGATTGGAAT+CGG 0.449333 5.1:-53531903 MS.gene43716:CDS
GCTCAGTATCCTGACATCAT+TGG 0.449340 5.1:-53531633 MS.gene43716:CDS
TCAAGACCATCAAGTTCATC+AGG 0.450633 5.1:+53532272 None:intergenic
TGTGGAGTATCTGGAAAGCT+TGG 0.452920 5.1:-53531796 MS.gene43716:CDS
CTGGTAGGACGTATAGTTAT+AGG 0.454647 5.1:-53532463 MS.gene43716:CDS
ATTGTTCCTGATGAACTTGA+TGG 0.456166 5.1:-53532278 MS.gene43716:CDS
AATTTCGCCAGAGTCCCGTT+TGG 0.461902 5.1:+53532415 None:intergenic
CTGGCGAAATTCAAAGGAAA+CGG 0.464517 5.1:-53532403 MS.gene43716:CDS
CCGGTGGTCAAGTATCTTCA+GGG 0.466032 5.1:-53532017 MS.gene43716:CDS
CGGGGATCCAAACGGGACTC+TGG 0.468895 5.1:-53532422 MS.gene43716:CDS
TGATTCGCGGGGATCCAAAC+GGG 0.468998 5.1:-53532429 MS.gene43716:CDS
GAGAGGTATCCTGAAGTGTT+GGG 0.470423 5.1:-53531957 MS.gene43716:CDS
CACTATTGATATGGAAGAGA+TGG 0.470517 5.1:-53531175 MS.gene43716:CDS
GCCGAACATTAAACTCTTCG+AGG 0.470544 5.1:+53531679 None:intergenic
CTTTCCAGATACTCCACAAA+AGG 0.473709 5.1:+53531801 None:intergenic
CTTCTCTTATCTGCAAGCTT+CGG 0.475890 5.1:+53531597 None:intergenic
CATAACATGGTTGCTAAGAA+AGG 0.477153 5.1:-53531267 MS.gene43716:CDS
GCTTCATTCTAGTGTGGTTG+TGG 0.477857 5.1:-53532048 MS.gene43716:CDS
AAACCATAAGTGAAGAATGC+TGG 0.479920 5.1:+53531312 None:intergenic
GAAAGGATTGAAGTGTTCTC+TGG 0.480186 5.1:-53531250 MS.gene43716:CDS
GGACCGGTGCTGCTGATTCG+CGG 0.485919 5.1:-53532442 MS.gene43716:CDS
CCCTCGAAGAGTTTAATGTT+CGG 0.492782 5.1:-53531680 MS.gene43716:CDS
CTGATTCGCGGGGATCCAAA+CGG 0.493660 5.1:-53532430 MS.gene43716:CDS
CAAATGAGGAAGATGATTGT+TGG 0.494500 5.1:-53531435 MS.gene43716:CDS
GTGTTGGGATTCAAACTTGA+GGG 0.498220 5.1:-53531942 MS.gene43716:CDS
AAGTGAGATGGAAAGGCCTT+TGG 0.499414 5.1:-53531352 MS.gene43716:CDS
ATCTGAAATTAAGAAAGATA+AGG 0.501088 5.1:-53532345 MS.gene43716:CDS
AATGAATTCATGTCAAATGA+TGG 0.505787 5.1:+53531144 None:intergenic
GTTCCTGTGCTTGATTACCT+TGG 0.506625 5.1:-53532128 MS.gene43716:CDS
TCAGGGGATGGATATCAAAC+CGG 0.510690 5.1:-53532000 MS.gene43716:CDS
AAGGCCTTTCCATCTCACTT+TGG 0.510909 5.1:+53531355 None:intergenic
TGAGAGGTATCCTGAAGTGT+TGG 0.512556 5.1:-53531958 MS.gene43716:CDS
CCACGTTAACGCAGTTCTTG+CGG 0.514225 5.1:-53532085 MS.gene43716:CDS
TGTTACGGTTGATGTTATGA+AGG 0.514841 5.1:-53532243 MS.gene43716:CDS
TGGTCTTGAACTTCCTGTTA+CGG 0.514972 5.1:-53532258 MS.gene43716:CDS
GAATCTGATTCATCGCTCCT+TGG 0.517997 5.1:+53531114 None:intergenic
TTAGCAACCATGTTATGCCT+AGG 0.519862 5.1:+53531273 None:intergenic
AGTCTAGCAATAGCTAGCCT+TGG 0.521140 5.1:+53531768 None:intergenic
TGTTTAAAGCAAGTAGTTGA+GGG 0.521469 5.1:+53531409 None:intergenic
TGTGCTTGATTTGGATGTTG+AGG 0.522040 5.1:-53531562 MS.gene43716:CDS
AGGTCGGTTCCAATGATGTC+AGG 0.523721 5.1:+53531624 None:intergenic
AACCATAAGTGAAGAATGCT+GGG 0.531139 5.1:+53531313 None:intergenic
AATTTCAGATAAACTCGGAC+GGG 0.532219 5.1:+53532358 None:intergenic
CCCGCATCCCCAAAATCTCC+GGG 0.534445 5.1:+53531841 None:intergenic
ATCTTCCTAATACAATTACA+TGG 0.538869 5.1:+53532518 None:intergenic
TCCCCGCGAATCAGCAGCAC+CGG 0.539690 5.1:+53532439 None:intergenic
TGCAAGCTTCGGCTCTAGGT+CGG 0.547317 5.1:+53531608 None:intergenic
AATTCAAAGGAAACGGGGAG+GGG 0.548403 5.1:-53532396 MS.gene43716:CDS
CGATTACTTCCAAAGTGAGA+TGG 0.549323 5.1:-53531364 MS.gene43716:CDS
GGGACTCTGGCGAAATTCAA+AGG 0.550251 5.1:-53532409 MS.gene43716:CDS
TTCTTAATTTCAGATAAACT+CGG 0.551846 5.1:+53532353 None:intergenic
AAATTCAAAGGAAACGGGGA+GGG 0.552308 5.1:-53532397 MS.gene43716:CDS
TATTTGATTGGAATCGGTGT+TGG 0.555605 5.1:-53531897 MS.gene43716:CDS
ATGTTTAAAGCAAGTAGTTG+AGG 0.555715 5.1:+53531408 None:intergenic
CCCTGAAGATACTTGACCAC+CGG 0.559238 5.1:+53532017 None:intergenic
AACAACTATCCTCTTGTACT+GGG 0.560648 5.1:-53532173 MS.gene43716:CDS
CCGCAAGAACTGCGTTAACG+TGG 0.564848 5.1:+53532085 None:intergenic
AGGATACTGAGCAATTATAG+AGG 0.570014 5.1:+53531644 None:intergenic
ACACTAGAATGAAGCACTTG+TGG 0.573884 5.1:+53532056 None:intergenic
AAATCAACGTGCTTCAGCAT+AGG 0.578326 5.1:+53531486 None:intergenic
ACACTACATCCCAGTACAAG+AGG 0.579075 5.1:+53532164 None:intergenic
GGTCAAGTATCTTCAGGGGA+TGG 0.581823 5.1:-53532012 MS.gene43716:CDS
TGTGGTTGTGGATCTTGTGC+CGG 0.581899 5.1:-53532036 MS.gene43716:CDS
ACTTCCAAAGTGAGATGGAA+AGG 0.582725 5.1:-53531359 MS.gene43716:CDS
TGAATTCATTGATGCGGCCA+AGG 0.585206 5.1:-53531131 MS.gene43716:CDS
TTGACATGAATTCATTGATG+CGG 0.585388 5.1:-53531137 MS.gene43716:CDS
ATATTCCTCGTGTTCTTGAG+AGG 0.588108 5.1:-53531974 MS.gene43716:CDS
TGAGAAATTTGAGCAACGAA+TGG 0.590339 5.1:-53531205 MS.gene43716:CDS
AGAACACGAGGAATATCATC+CGG 0.593566 5.1:+53531981 None:intergenic
GATTGAAGTGTTCTCTGGCA+TGG 0.595640 5.1:-53531245 MS.gene43716:CDS
ATAAGCAACAGATGTACTCA+TGG 0.595928 5.1:+53531917 None:intergenic
TCCTAACTCCCAATTTACCA+AGG 0.597942 5.1:+53532111 None:intergenic
CCGAACATTAAACTCTTCGA+GGG 0.604717 5.1:+53531680 None:intergenic
AGGACGTATAGTTATAGGAC+CGG 0.612646 5.1:-53532458 MS.gene43716:CDS
TTACCAAGGTAATCAAGCAC+AGG 0.615617 5.1:+53532125 None:intergenic
TTCAATGTTCTGTTGCTGGT+AGG 0.617163 5.1:-53532478 MS.gene43716:CDS
TGGAAAGCTTGGGTATTCCA+AGG 0.618103 5.1:-53531785 MS.gene43716:CDS
AACTCAACCAAATCTACCAA+AGG 0.619874 5.1:+53531336 None:intergenic
TAATTTCAGATAAACTCGGA+CGG 0.623058 5.1:+53532357 None:intergenic
ACAAGTGCTTCATTCTAGTG+TGG 0.623981 5.1:-53532054 MS.gene43716:CDS
ATTGTTTATGAGTTCTTGCG+AGG 0.628501 5.1:-53532308 MS.gene43716:CDS
TGGAGTCAACTATAAAACCT+AGG 0.628708 5.1:-53531290 MS.gene43716:CDS
ACCGGTGCTGCTGATTCGCG+GGG 0.640590 5.1:-53532440 MS.gene43716:CDS
TATAAAACCTAGGCATAACA+TGG 0.645601 5.1:-53531280 MS.gene43716:CDS
AATCATTGAGAAGATGCCGC+AGG 0.648015 5.1:-53531529 MS.gene43716:CDS
GGTGTTGGAAGAAGAGAACT+CGG 0.656801 5.1:-53531882 MS.gene43716:CDS
CGGTGGTCAAGTATCTTCAG+GGG 0.659657 5.1:-53532016 MS.gene43716:CDS
AGTGTTGGGATTCAAACTTG+AGG 0.668806 5.1:-53531943 MS.gene43716:CDS
GGTTGTGGATCTTGTGCCGG+TGG 0.671700 5.1:-53532033 MS.gene43716:CDS
GAAATTCAAAGGAAACGGGG+AGG 0.688989 5.1:-53532398 MS.gene43716:CDS
TCAGCATAGGTGTAGTACTG+AGG 0.702066 5.1:+53531499 None:intergenic
ATAAACAATTTCACGCAACG+TGG 0.704806 5.1:+53532322 None:intergenic
GGCGAAATTCAAAGGAAACG+GGG 0.719631 5.1:-53532401 MS.gene43716:CDS
GTACTGAGGCTAACTACCTG+CGG 0.724109 5.1:+53531513 None:intergenic
GGATACCTCTCAAGAACACG+AGG 0.733931 5.1:+53531969 None:intergenic
GTTGGAAGAAGAGAACTCGG+AGG 0.795387 5.1:-53531879 MS.gene43716:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCTTAATTTCAGATAAACT+CGG + chr5.1:53531287-53531306 None:intergenic 20.0%
!!! ATCTGAAATTAAGAAAGATA+AGG - chr5.1:53531292-53531311 MS.gene43716:CDS 20.0%
! AAATCGAATCCAAGAATATA+AGG + chr5.1:53531908-53531927 None:intergenic 25.0%
! AATGAATTCATGTCAAATGA+TGG + chr5.1:53532496-53532515 None:intergenic 25.0%
! AATTGCCATGTAATTGTATT+AGG - chr5.1:53531114-53531133 MS.gene43716:CDS 25.0%
! ATCTTCCTAATACAATTACA+TGG + chr5.1:53531122-53531141 None:intergenic 25.0%
! GTAATTGTATTAGGAAGATA+AGG - chr5.1:53531123-53531142 MS.gene43716:CDS 25.0%
! TTATATTCTTGGATTCGATT+TGG - chr5.1:53531907-53531926 MS.gene43716:CDS 25.0%
!! TTGATTTTCTTAAGGATTGT+GGG - chr5.1:53532167-53532186 MS.gene43716:CDS 25.0%
ATGTAGTGTCAAGAAGAATA+TGG - chr5.1:53531487-53531506 MS.gene43716:CDS 30.0%
CTTGATTACCTTGGTAAATT+GGG - chr5.1:53531518-53531537 MS.gene43716:CDS 30.0%
GAATGACCAAATGTTAGAAT+TGG + chr5.1:53531065-53531084 None:intergenic 30.0%
GTTGCTTATTTGATTGGAAT+CGG - chr5.1:53531734-53531753 MS.gene43716:CDS 30.0%
TAATTTCAGATAAACTCGGA+CGG + chr5.1:53531283-53531302 None:intergenic 30.0%
TATAAAACCTAGGCATAACA+TGG - chr5.1:53532357-53532376 MS.gene43716:CDS 30.0%
TTGACATGAATTCATTGATG+CGG - chr5.1:53532500-53532519 MS.gene43716:CDS 30.0%
! ACATCTGTTGCTTATTTGAT+TGG - chr5.1:53531728-53531747 MS.gene43716:CDS 30.0%
! ATGTTTAAAGCAAGTAGTTG+AGG + chr5.1:53532232-53532251 None:intergenic 30.0%
! TGTTTAAAGCAAGTAGTTGA+GGG + chr5.1:53532231-53532250 None:intergenic 30.0%
! TTGATTTTCTTCACAGTTTG+GGG - chr5.1:53531423-53531442 MS.gene43716:CDS 30.0%
!! GTTGATTTTCTTAAGGATTG+TGG - chr5.1:53532166-53532185 MS.gene43716:CDS 30.0%
!! GTTGATTTTCTTCACAGTTT+GGG - chr5.1:53531422-53531441 MS.gene43716:CDS 30.0%
!!! TGTTGATTTTCTTCACAGTT+TGG - chr5.1:53531421-53531440 MS.gene43716:CDS 30.0%
AAACCATAAGTGAAGAATGC+TGG + chr5.1:53532328-53532347 None:intergenic 35.0%
AACAACTATCCTCTTGTACT+GGG - chr5.1:53531464-53531483 MS.gene43716:CDS 35.0%
AACCATAAGTGAAGAATGCT+GGG + chr5.1:53532327-53532346 None:intergenic 35.0%
AACTCAACCAAATCTACCAA+AGG + chr5.1:53532304-53532323 None:intergenic 35.0%
AAGATTCAATGTTCTGTTGC+TGG - chr5.1:53531155-53531174 MS.gene43716:CDS 35.0%
AATTTCAGATAAACTCGGAC+GGG + chr5.1:53531282-53531301 None:intergenic 35.0%
AGCATTCTTCACTTATGGTT+TGG - chr5.1:53532327-53532346 MS.gene43716:CDS 35.0%
AGGATACTGAGCAATTATAG+AGG + chr5.1:53531996-53532015 None:intergenic 35.0%
ATAAACAATTTCACGCAACG+TGG + chr5.1:53531318-53531337 None:intergenic 35.0%
ATAAGCAACAGATGTACTCA+TGG + chr5.1:53531723-53531742 None:intergenic 35.0%
ATTGTTCCTGATGAACTTGA+TGG - chr5.1:53531359-53531378 MS.gene43716:CDS 35.0%
ATTGTTTATGAGTTCTTGCG+AGG - chr5.1:53531329-53531348 MS.gene43716:CDS 35.0%
CAAATGAGGAAGATGATTGT+TGG - chr5.1:53532202-53532221 MS.gene43716:CDS 35.0%
CACTATTGATATGGAAGAGA+TGG - chr5.1:53532462-53532481 MS.gene43716:CDS 35.0%
CATAACATGGTTGCTAAGAA+AGG - chr5.1:53532370-53532389 MS.gene43716:CDS 35.0%
GAGACACAACCTTATATTCT+TGG - chr5.1:53531896-53531915 MS.gene43716:CDS 35.0%
GATTTGGATGTTGAGGATTT+CGG - chr5.1:53532082-53532101 MS.gene43716:CDS 35.0%
GCTTGATTACCTTGGTAAAT+TGG - chr5.1:53531517-53531536 MS.gene43716:CDS 35.0%
GGACTATGACACTATTGATA+TGG - chr5.1:53532453-53532472 MS.gene43716:CDS 35.0%
TAACAACTATCCTCTTGTAC+TGG - chr5.1:53531463-53531482 MS.gene43716:CDS 35.0%
TATTTGATTGGAATCGGTGT+TGG - chr5.1:53531740-53531759 MS.gene43716:CDS 35.0%
TGAGAAATTTGAGCAACGAA+TGG - chr5.1:53532432-53532451 MS.gene43716:CDS 35.0%
TGATATGGAAGAGATGGAAA+TGG - chr5.1:53532468-53532487 MS.gene43716:CDS 35.0%
TGGAGTCAACTATAAAACCT+AGG - chr5.1:53532347-53532366 MS.gene43716:CDS 35.0%
TTCATAACATCAACCGTAAC+AGG + chr5.1:53531395-53531414 None:intergenic 35.0%
! TGTTACGGTTGATGTTATGA+AGG - chr5.1:53531394-53531413 MS.gene43716:CDS 35.0%
!!! GAAGCACGTTGATTTTCTTA+AGG - chr5.1:53532159-53532178 MS.gene43716:CDS 35.0%
AAATCAACGTGCTTCAGCAT+AGG + chr5.1:53532154-53532173 None:intergenic 40.0%
AAATTCAAAGGAAACGGGGA+GGG - chr5.1:53531240-53531259 MS.gene43716:CDS 40.0%
ACAAGTGCTTCATTCTAGTG+TGG - chr5.1:53531583-53531602 MS.gene43716:CDS 40.0%
ACCTTGGTAAATTGGGAGTT+AGG - chr5.1:53531525-53531544 MS.gene43716:CDS 40.0%
ACTTCCAAAGTGAGATGGAA+AGG - chr5.1:53532278-53532297 MS.gene43716:CDS 40.0%
AGAACACGAGGAATATCATC+CGG + chr5.1:53531659-53531678 None:intergenic 40.0%
AGGACGTATAGTTATAGGAC+CGG - chr5.1:53531179-53531198 MS.gene43716:CDS 40.0%
AGGCATCTTAACTAGATTCC+CGG - chr5.1:53531778-53531797 MS.gene43716:CDS 40.0%
AGTTTGAATCCCAACACTTC+AGG + chr5.1:53531692-53531711 None:intergenic 40.0%
ATATTCCTCGTGTTCTTGAG+AGG - chr5.1:53531663-53531682 MS.gene43716:CDS 40.0%
CCCTCGAAGAGTTTAATGTT+CGG - chr5.1:53531957-53531976 MS.gene43716:CDS 40.0%
CCGAACATTAAACTCTTCGA+GGG + chr5.1:53531960-53531979 None:intergenic 40.0%
CGATTACTTCCAAAGTGAGA+TGG - chr5.1:53532273-53532292 MS.gene43716:CDS 40.0%
CTGGCGAAATTCAAAGGAAA+CGG - chr5.1:53531234-53531253 MS.gene43716:CDS 40.0%
CTGGTAGGACGTATAGTTAT+AGG - chr5.1:53531174-53531193 MS.gene43716:CDS 40.0%
CTTCTCTTATCTGCAAGCTT+CGG + chr5.1:53532043-53532062 None:intergenic 40.0%
CTTTCCAGATACTCCACAAA+AGG + chr5.1:53531839-53531858 None:intergenic 40.0%
GCTCAATTCTGTGCTTGATT+TGG - chr5.1:53532066-53532085 MS.gene43716:CDS 40.0%
GTGTTGGGATTCAAACTTGA+GGG - chr5.1:53531695-53531714 MS.gene43716:CDS 40.0%
TATGAGTTCTTGCGAGGAAT+CGG - chr5.1:53531335-53531354 MS.gene43716:CDS 40.0%
TCAAGACCATCAAGTTCATC+AGG + chr5.1:53531368-53531387 None:intergenic 40.0%
TCCTAACTCCCAATTTACCA+AGG + chr5.1:53531529-53531548 None:intergenic 40.0%
TGGCGAAATTCAAAGGAAAC+GGG - chr5.1:53531235-53531254 MS.gene43716:CDS 40.0%
TTACCAAGGTAATCAAGCAC+AGG + chr5.1:53531515-53531534 None:intergenic 40.0%
TTAGCAACCATGTTATGCCT+AGG + chr5.1:53532367-53532386 None:intergenic 40.0%
TTCAATGTTCTGTTGCTGGT+AGG - chr5.1:53531159-53531178 MS.gene43716:CDS 40.0%
TTCCCAGCATTCTTCACTTA+TGG - chr5.1:53532322-53532341 MS.gene43716:CDS 40.0%
! AACTAGATTCCCGGAGATTT+TGG - chr5.1:53531787-53531806 MS.gene43716:CDS 40.0%
! ACACTAGAATGAAGCACTTG+TGG + chr5.1:53531584-53531603 None:intergenic 40.0%
! ACTAGATTCCCGGAGATTTT+GGG - chr5.1:53531788-53531807 MS.gene43716:CDS 40.0%
! AGTGTTGGGATTCAAACTTG+AGG - chr5.1:53531694-53531713 MS.gene43716:CDS 40.0%
! GAAAGGATTGAAGTGTTCTC+TGG - chr5.1:53532387-53532406 MS.gene43716:CDS 40.0%
! GGTTTTCTGTGGATCAAATG+AGG - chr5.1:53532188-53532207 MS.gene43716:CDS 40.0%
! TAAGGATTGTGGGTTTTCTG+TGG - chr5.1:53532177-53532196 MS.gene43716:CDS 40.0%
! TAGAGTCATCAAGCCTTTTG+TGG - chr5.1:53531823-53531842 MS.gene43716:CDS 40.0%
! TGGTCTTGAACTTCCTGTTA+CGG - chr5.1:53531379-53531398 MS.gene43716:CDS 40.0%
!! TGTGCTTGATTTGGATGTTG+AGG - chr5.1:53532075-53532094 MS.gene43716:CDS 40.0%
AAGGCCTTTCCATCTCACTT+TGG + chr5.1:53532285-53532304 None:intergenic 45.0%
AAGTGAGATGGAAAGGCCTT+TGG - chr5.1:53532285-53532304 MS.gene43716:CDS 45.0%
AATCATTGAGAAGATGCCGC+AGG - chr5.1:53532108-53532127 MS.gene43716:CDS 45.0%
AATTCAAAGGAAACGGGGAG+GGG - chr5.1:53531241-53531260 MS.gene43716:CDS 45.0%
ACACTACATCCCAGTACAAG+AGG + chr5.1:53531476-53531495 None:intergenic 45.0%
GAAATTCAAAGGAAACGGGG+AGG - chr5.1:53531239-53531258 MS.gene43716:CDS 45.0%
GAATCTGATTCATCGCTCCT+TGG + chr5.1:53532526-53532545 None:intergenic 45.0%
GCCGAACATTAAACTCTTCG+AGG + chr5.1:53531961-53531980 None:intergenic 45.0%
GCTCAGTATCCTGACATCAT+TGG - chr5.1:53532004-53532023 MS.gene43716:CDS 45.0%
GCTTCATTCTAGTGTGGTTG+TGG - chr5.1:53531589-53531608 MS.gene43716:CDS 45.0%
GGAAAGGCCTTTGGTAGATT+TGG - chr5.1:53532294-53532313 MS.gene43716:CDS 45.0%
GGCGAAATTCAAAGGAAACG+GGG - chr5.1:53531236-53531255 MS.gene43716:CDS 45.0%
GTTCCTGTGCTTGATTACCT+TGG - chr5.1:53531509-53531528 MS.gene43716:CDS 45.0%
TCAGCATAGGTGTAGTACTG+AGG + chr5.1:53532141-53532160 None:intergenic 45.0%
TCAGGGGATGGATATCAAAC+CGG - chr5.1:53531637-53531656 MS.gene43716:CDS 45.0%
TGAATTCATTGATGCGGCCA+AGG - chr5.1:53532506-53532525 MS.gene43716:CDS 45.0%
TGGAAAGCTTGGGTATTCCA+AGG - chr5.1:53531852-53531871 MS.gene43716:CDS 45.0%
! AGTCTAGCAATAGCTAGCCT+TGG + chr5.1:53531872-53531891 None:intergenic 45.0%
! CTAGATTCCCGGAGATTTTG+GGG - chr5.1:53531789-53531808 MS.gene43716:CDS 45.0%
! GATTGAAGTGTTCTCTGGCA+TGG - chr5.1:53532392-53532411 MS.gene43716:CDS 45.0%
! GGTGTTGGAAGAAGAGAACT+CGG - chr5.1:53531755-53531774 MS.gene43716:CDS 45.0%
! GTGGAGTATCTGGAAAGCTT+GGG - chr5.1:53531842-53531861 MS.gene43716:CDS 45.0%
! TGTGGAGTATCTGGAAAGCT+TGG - chr5.1:53531841-53531860 MS.gene43716:CDS 45.0%
!! CAAGCCTTTTGTGGAGTATC+TGG - chr5.1:53531832-53531851 MS.gene43716:CDS 45.0%
!! GAGAGGTATCCTGAAGTGTT+GGG - chr5.1:53531680-53531699 MS.gene43716:CDS 45.0%
!! TGAGAGGTATCCTGAAGTGT+TGG - chr5.1:53531679-53531698 MS.gene43716:CDS 45.0%
AATTTCGCCAGAGTCCCGTT+TGG + chr5.1:53531225-53531244 None:intergenic 50.0%
CCACGTTAACGCAGTTCTTG+CGG - chr5.1:53531552-53531571 MS.gene43716:CDS 50.0%
CCCTGAAGATACTTGACCAC+CGG + chr5.1:53531623-53531642 None:intergenic 50.0%
CCGGTGGTCAAGTATCTTCA+GGG - chr5.1:53531620-53531639 MS.gene43716:CDS 50.0%
CGGTGGTCAAGTATCTTCAG+GGG - chr5.1:53531621-53531640 MS.gene43716:CDS 50.0%
GGATACCTCTCAAGAACACG+AGG + chr5.1:53531671-53531690 None:intergenic 50.0%
GGGACTCTGGCGAAATTCAA+AGG - chr5.1:53531228-53531247 MS.gene43716:CDS 50.0%
GGTCAAGTATCTTCAGGGGA+TGG - chr5.1:53531625-53531644 MS.gene43716:CDS 50.0%
GTACTGAGGCTAACTACCTG+CGG + chr5.1:53532127-53532146 None:intergenic 50.0%
GTTGGAAGAAGAGAACTCGG+AGG - chr5.1:53531758-53531777 MS.gene43716:CDS 50.0%
TATCTGCAAGCTTCGGCTCT+AGG + chr5.1:53532036-53532055 None:intergenic 50.0%
TGTGGTTGTGGATCTTGTGC+CGG - chr5.1:53531601-53531620 MS.gene43716:CDS 50.0%
! AGGTCGGTTCCAATGATGTC+AGG + chr5.1:53532016-53532035 None:intergenic 50.0%
ACCCGCATCCCCAAAATCTC+CGG + chr5.1:53531800-53531819 None:intergenic 55.0%
CCGCAAGAACTGCGTTAACG+TGG + chr5.1:53531555-53531574 None:intergenic 55.0%
GCCGGTGGTCAAGTATCTTC+AGG - chr5.1:53531619-53531638 MS.gene43716:CDS 55.0%
TGATTCGCGGGGATCCAAAC+GGG - chr5.1:53531208-53531227 MS.gene43716:CDS 55.0%
! CTGATTCGCGGGGATCCAAA+CGG - chr5.1:53531207-53531226 MS.gene43716:CDS 55.0%
!! GAGATTTTGGGGATGCGGGT+TGG - chr5.1:53531800-53531819 MS.gene43716:CDS 55.0%
!! TCCCGGAGATTTTGGGGATG+CGG - chr5.1:53531795-53531814 MS.gene43716:CDS 55.0%
!! TGCAAGCTTCGGCTCTAGGT+CGG + chr5.1:53532032-53532051 None:intergenic 55.0%
CCCGCATCCCCAAAATCTCC+GGG + chr5.1:53531799-53531818 None:intergenic 60.0%
GGTTGTGGATCTTGTGCCGG+TGG - chr5.1:53531604-53531623 MS.gene43716:CDS 60.0%
!! CCCGGAGATTTTGGGGATGC+GGG - chr5.1:53531796-53531815 MS.gene43716:CDS 60.0%
CGGGGATCCAAACGGGACTC+TGG - chr5.1:53531215-53531234 MS.gene43716:CDS 65.0%
TCCCCGCGAATCAGCAGCAC+CGG + chr5.1:53531201-53531220 None:intergenic 65.0%
!! ACCGGTGCTGCTGATTCGCG+GGG - chr5.1:53531197-53531216 MS.gene43716:CDS 65.0%
!! GACCGGTGCTGCTGATTCGC+GGG - chr5.1:53531196-53531215 MS.gene43716:CDS 65.0%
!! GGACCGGTGCTGCTGATTCG+CGG - chr5.1:53531195-53531214 MS.gene43716:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 53531059 53532600 53531059 ID=MS.gene43716
chr5.1 mRNA 53531059 53532600 53531059 ID=MS.gene43716.t1;Parent=MS.gene43716
chr5.1 exon 53531059 53532600 53531059 ID=MS.gene43716.t1.exon1;Parent=MS.gene43716.t1
chr5.1 CDS 53531059 53532600 53531059 ID=cds.MS.gene43716.t1;Parent=MS.gene43716.t1
Gene Sequence

>MS.gene43716

ATGCCAATTCTAACATTTGGTCATTCTAAGTTAACTGCTGCTACACTAGCTCTTCAATTGCCATGTAATTGTATTAGGAAGATAAGGTTTATTACAAAGATTCAATGTTCTGTTGCTGGTAGGACGTATAGTTATAGGACCGGTGCTGCTGATTCGCGGGGATCCAAACGGGACTCTGGCGAAATTCAAAGGAAACGGGGAGGGGCATCGTCGTTGTATGCCCGTCCGAGTTTATCTGAAATTAAGAAAGATAAGGCCACGTTGCGTGAAATTGTTTATGAGTTCTTGCGAGGAATCGGCATTGTTCCTGATGAACTTGATGGTCTTGAACTTCCTGTTACGGTTGATGTTATGAAGGAGCGTGTTGATTTTCTTCACAGTTTGGGGCTTACGATTGAAGACATTAACAACTATCCTCTTGTACTGGGATGTAGTGTCAAGAAGAATATGGTTCCTGTGCTTGATTACCTTGGTAAATTGGGAGTTAGGAAATCCACGTTAACGCAGTTCTTGCGGAGATATCCACAAGTGCTTCATTCTAGTGTGGTTGTGGATCTTGTGCCGGTGGTCAAGTATCTTCAGGGGATGGATATCAAACCGGATGATATTCCTCGTGTTCTTGAGAGGTATCCTGAAGTGTTGGGATTCAAACTTGAGGGAACCATGAGTACATCTGTTGCTTATTTGATTGGAATCGGTGTTGGAAGAAGAGAACTCGGAGGCATCTTAACTAGATTCCCGGAGATTTTGGGGATGCGGGTTGGTAGAGTCATCAAGCCTTTTGTGGAGTATCTGGAAAGCTTGGGTATTCCAAGGCTAGCTATTGCTAGACTGATAGAGACACAACCTTATATTCTTGGATTCGATTTGGACGAGAAAGTGAAGTCAAATGTCAAATCCCTCGAAGAGTTTAATGTTCGGCAGACATTGCTTGCCTCTATAATTGCTCAGTATCCTGACATCATTGGAACCGACCTAGAGCCGAAGCTTGCAGATAAGAGAAGTGTGCTCAATTCTGTGCTTGATTTGGATGTTGAGGATTTCGGCTTAATCATTGAGAAGATGCCGCAGGTAGTTAGCCTCAGTACTACACCTATGCTGAAGCACGTTGATTTTCTTAAGGATTGTGGGTTTTCTGTGGATCAAATGAGGAAGATGATTGTTGGATGCCCTCAACTACTTGCTTTAAACATTGATATCATGAAACTTAGCTTCGATTACTTCCAAAGTGAGATGGAAAGGCCTTTGGTAGATTTGGTTGAGTTCCCAGCATTCTTCACTTATGGTTTGGAGTCAACTATAAAACCTAGGCATAACATGGTTGCTAAGAAAGGATTGAAGTGTTCTCTGGCATGGATGCTTAATTGTTCTGATGAGAAATTTGAGCAACGAATGGACTATGACACTATTGATATGGAAGAGATGGAAATGGAACCATCATTTGACATGAATTCATTGATGCGGCCAAGGAGCGATGAATCAGATTCTGATTATGAAGACAGTGATTATGATGATGATGATGATGATGATGATGATGAGTAA

Protein sequence

>MS.gene43716.t1

MPILTFGHSKLTAATLALQLPCNCIRKIRFITKIQCSVAGRTYSYRTGAADSRGSKRDSGEIQRKRGGASSLYARPSLSEIKKDKATLREIVYEFLRGIGIVPDELDGLELPVTVDVMKERVDFLHSLGLTIEDINNYPLVLGCSVKKNMVPVLDYLGKLGVRKSTLTQFLRRYPQVLHSSVVVDLVPVVKYLQGMDIKPDDIPRVLERYPEVLGFKLEGTMSTSVAYLIGIGVGRRELGGILTRFPEILGMRVGRVIKPFVEYLESLGIPRLAIARLIETQPYILGFDLDEKVKSNVKSLEEFNVRQTLLASIIAQYPDIIGTDLEPKLADKRSVLNSVLDLDVEDFGLIIEKMPQVVSLSTTPMLKHVDFLKDCGFSVDQMRKMIVGCPQLLALNIDIMKLSFDYFQSEMERPLVDLVEFPAFFTYGLESTIKPRHNMVAKKGLKCSLAWMLNCSDEKFEQRMDYDTIDMEEMEMEPSFDMNSLMRPRSDESDSDYEDSDYDDDDDDDDDE