Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43716.t1 | XP_003615503.1 | 96.4 | 496 | 15 | 1 | 1 | 493 | 19 | 514 | 2.20E-156 | 562.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43716.t1 | Q9ZT96 | 77.8 | 465 | 94 | 2 | 34 | 489 | 55 | 519 | 3.8e-93 | 343.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43716.t1 | G7K677 | 96.4 | 496 | 15 | 1 | 1 | 493 | 19 | 514 | 1.6e-156 | 562.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene43716.t1 | TR | mTERF |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050301 | MS.gene43716 | 0.821605 | 3.69E-53 | -1.69E-46 |
MS.gene050529 | MS.gene43716 | 0.812366 | 4.40E-51 | -1.69E-46 |
MS.gene050670 | MS.gene43716 | 0.822198 | 2.69E-53 | -1.69E-46 |
MS.gene051582 | MS.gene43716 | 0.822996 | 1.76E-53 | -1.69E-46 |
MS.gene052188 | MS.gene43716 | 0.84662 | 1.94E-59 | -1.69E-46 |
MS.gene052310 | MS.gene43716 | 0.820375 | 7.09E-53 | -1.69E-46 |
MS.gene052340 | MS.gene43716 | 0.822094 | 2.85E-53 | -1.69E-46 |
MS.gene053836 | MS.gene43716 | 0.817621 | 3.00E-52 | -1.69E-46 |
MS.gene054349 | MS.gene43716 | 0.808318 | 3.28E-50 | -1.69E-46 |
MS.gene055116 | MS.gene43716 | 0.842097 | 3.18E-58 | -1.69E-46 |
MS.gene055428 | MS.gene43716 | 0.804789 | 1.82E-49 | -1.69E-46 |
MS.gene05553 | MS.gene43716 | 0.840586 | 7.95E-58 | -1.69E-46 |
MS.gene055564 | MS.gene43716 | 0.820564 | 6.42E-53 | -1.69E-46 |
MS.gene055859 | MS.gene43716 | 0.808942 | 2.42E-50 | -1.69E-46 |
MS.gene056407 | MS.gene43716 | 0.844769 | 6.16E-59 | -1.69E-46 |
MS.gene056410 | MS.gene43716 | 0.800058 | 1.72E-48 | -1.69E-46 |
MS.gene056796 | MS.gene43716 | 0.828556 | 8.42E-55 | -1.69E-46 |
MS.gene05702 | MS.gene43716 | 0.844389 | 7.79E-59 | -1.69E-46 |
MS.gene057749 | MS.gene43716 | 0.841897 | 3.60E-58 | -1.69E-46 |
MS.gene057823 | MS.gene43716 | 0.827109 | 1.88E-54 | -1.69E-46 |
MS.gene057825 | MS.gene43716 | 0.816236 | 6.13E-52 | -1.69E-46 |
MS.gene058002 | MS.gene43716 | 0.851069 | 1.13E-60 | -1.69E-46 |
MS.gene058082 | MS.gene43716 | 0.82901 | 6.54E-55 | -1.69E-46 |
MS.gene05811 | MS.gene43716 | 0.814492 | 1.50E-51 | -1.69E-46 |
MS.gene058142 | MS.gene43716 | 0.81385 | 2.08E-51 | -1.69E-46 |
MS.gene058233 | MS.gene43716 | 0.805464 | 1.32E-49 | -1.69E-46 |
MS.gene058660 | MS.gene43716 | 0.817607 | 3.02E-52 | -1.69E-46 |
MS.gene05886 | MS.gene43716 | 0.802491 | 5.47E-49 | -1.69E-46 |
MS.gene05907 | MS.gene43716 | 0.84052 | 8.28E-58 | -1.69E-46 |
MS.gene059597 | MS.gene43716 | 0.824774 | 6.73E-54 | -1.69E-46 |
MS.gene059676 | MS.gene43716 | 0.843004 | 1.83E-58 | -1.69E-46 |
MS.gene059688 | MS.gene43716 | 0.816769 | 4.66E-52 | -1.69E-46 |
MS.gene059692 | MS.gene43716 | 0.823013 | 1.74E-53 | -1.69E-46 |
MS.gene059695 | MS.gene43716 | 0.822852 | 1.90E-53 | -1.69E-46 |
MS.gene060403 | MS.gene43716 | 0.822627 | 2.14E-53 | -1.69E-46 |
MS.gene061049 | MS.gene43716 | 0.817116 | 3.90E-52 | -1.69E-46 |
MS.gene061154 | MS.gene43716 | 0.809414 | 1.91E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43716.t1 | MTR_5g068860 | 95.538 | 493 | 19 | 1 | 1 | 490 | 19 | 511 | 0.0 | 931 |
MS.gene43716.t1 | MTR_1g115415 | 53.250 | 400 | 185 | 1 | 82 | 481 | 71 | 468 | 6.15e-155 | 451 |
MS.gene43716.t1 | MTR_8g105560 | 43.128 | 422 | 184 | 4 | 82 | 502 | 49 | 415 | 1.60e-112 | 345 |
MS.gene43716.t1 | MTR_4g070060 | 27.606 | 355 | 249 | 4 | 115 | 463 | 235 | 587 | 1.42e-34 | 137 |
MS.gene43716.t1 | MTR_4g084630 | 23.548 | 310 | 199 | 4 | 155 | 462 | 46 | 319 | 2.95e-31 | 124 |
MS.gene43716.t1 | MTR_4g084630 | 23.182 | 220 | 160 | 3 | 120 | 330 | 43 | 262 | 6.48e-17 | 82.4 |
MS.gene43716.t1 | MTR_2g034600 | 28.425 | 292 | 199 | 7 | 185 | 473 | 210 | 494 | 1.12e-29 | 122 |
MS.gene43716.t1 | MTR_2g034600 | 21.986 | 282 | 171 | 7 | 118 | 354 | 211 | 488 | 3.23e-13 | 72.4 |
MS.gene43716.t1 | MTR_2g034600 | 28.425 | 292 | 199 | 7 | 185 | 473 | 275 | 559 | 1.90e-29 | 122 |
MS.gene43716.t1 | MTR_2g034600 | 21.986 | 282 | 171 | 7 | 118 | 354 | 276 | 553 | 3.00e-13 | 72.4 |
MS.gene43716.t1 | MTR_2g034600 | 28.425 | 292 | 199 | 7 | 185 | 473 | 271 | 555 | 2.19e-29 | 122 |
MS.gene43716.t1 | MTR_2g034600 | 21.986 | 282 | 171 | 7 | 118 | 354 | 272 | 549 | 3.55e-13 | 72.4 |
MS.gene43716.t1 | MTR_5g094610 | 25.982 | 331 | 196 | 9 | 150 | 471 | 191 | 481 | 5.86e-25 | 108 |
MS.gene43716.t1 | MTR_5g094610 | 24.153 | 236 | 166 | 5 | 113 | 340 | 221 | 451 | 4.75e-12 | 68.6 |
MS.gene43716.t1 | MTR_6g003960 | 24.924 | 329 | 241 | 6 | 135 | 461 | 263 | 587 | 5.02e-23 | 103 |
MS.gene43716.t1 | MTR_2g049780 | 25.379 | 264 | 156 | 7 | 202 | 463 | 82 | 306 | 4.47e-17 | 82.4 |
MS.gene43716.t1 | MTR_5g041630 | 25.461 | 271 | 158 | 7 | 190 | 458 | 61 | 289 | 5.97e-14 | 73.2 |
MS.gene43716.t1 | MTR_2g067230 | 23.022 | 278 | 167 | 6 | 190 | 466 | 73 | 304 | 1.08e-13 | 72.8 |
MS.gene43716.t1 | MTR_7g081270 | 23.774 | 265 | 182 | 7 | 206 | 461 | 26 | 279 | 8.10e-12 | 66.2 |
MS.gene43716.t1 | MTR_3g092710 | 22.604 | 407 | 266 | 14 | 98 | 461 | 91 | 491 | 3.36e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43716.t1 | AT4G02990 | 72.473 | 465 | 119 | 2 | 34 | 489 | 55 | 519 | 0.0 | 675 |
MS.gene43716.t1 | AT4G02990 | 72.473 | 465 | 119 | 2 | 34 | 489 | 55 | 519 | 0.0 | 675 |
MS.gene43716.t1 | AT2G44020 | 49.876 | 403 | 200 | 1 | 82 | 484 | 76 | 476 | 2.89e-145 | 427 |
MS.gene43716.t1 | AT2G21710 | 26.854 | 391 | 276 | 7 | 114 | 499 | 241 | 626 | 8.54e-40 | 153 |
MS.gene43716.t1 | AT2G21710 | 24.460 | 278 | 194 | 6 | 81 | 343 | 274 | 550 | 9.81e-18 | 87.0 |
MS.gene43716.t1 | AT4G38160 | 24.638 | 276 | 205 | 3 | 198 | 470 | 54 | 329 | 2.08e-32 | 127 |
MS.gene43716.t1 | AT4G38160 | 20.705 | 227 | 167 | 5 | 116 | 330 | 39 | 264 | 2.40e-14 | 74.7 |
MS.gene43716.t1 | AT4G38160 | 24.638 | 276 | 205 | 3 | 198 | 470 | 54 | 329 | 2.08e-32 | 127 |
MS.gene43716.t1 | AT4G38160 | 20.705 | 227 | 167 | 5 | 116 | 330 | 39 | 264 | 2.40e-14 | 74.7 |
MS.gene43716.t1 | AT4G38160 | 24.638 | 276 | 205 | 3 | 198 | 470 | 54 | 329 | 2.77e-32 | 127 |
MS.gene43716.t1 | AT4G38160 | 20.705 | 227 | 167 | 5 | 116 | 330 | 39 | 264 | 1.91e-14 | 75.5 |
MS.gene43716.t1 | AT4G38160 | 24.638 | 276 | 205 | 3 | 198 | 470 | 54 | 329 | 6.28e-32 | 126 |
MS.gene43716.t1 | AT4G38160 | 20.705 | 227 | 167 | 5 | 116 | 330 | 39 | 264 | 4.07e-14 | 74.3 |
MS.gene43716.t1 | AT4G14605 | 29.434 | 265 | 177 | 7 | 201 | 462 | 211 | 468 | 3.99e-27 | 114 |
MS.gene43716.t1 | AT4G14605 | 29.434 | 265 | 177 | 7 | 201 | 462 | 211 | 468 | 3.99e-27 | 114 |
MS.gene43716.t1 | AT2G21710 | 25.182 | 274 | 203 | 2 | 153 | 425 | 284 | 556 | 3.50e-26 | 112 |
MS.gene43716.t1 | AT2G21710 | 24.460 | 278 | 194 | 6 | 81 | 343 | 274 | 550 | 1.41e-17 | 86.3 |
MS.gene43716.t1 | AT2G21710 | 25.368 | 272 | 201 | 2 | 153 | 423 | 284 | 554 | 4.21e-26 | 112 |
MS.gene43716.t1 | AT2G21710 | 24.460 | 278 | 194 | 6 | 81 | 343 | 274 | 550 | 1.05e-17 | 86.7 |
MS.gene43716.t1 | AT1G78930 | 23.404 | 329 | 247 | 5 | 135 | 461 | 249 | 574 | 7.66e-25 | 108 |
MS.gene43716.t1 | AT5G55580 | 23.529 | 306 | 223 | 7 | 143 | 443 | 38 | 337 | 4.98e-20 | 92.4 |
MS.gene43716.t1 | AT5G55580 | 23.932 | 234 | 167 | 5 | 111 | 337 | 106 | 335 | 1.48e-12 | 69.7 |
MS.gene43716.t1 | AT5G55580 | 24.036 | 337 | 242 | 9 | 143 | 471 | 144 | 474 | 1.40e-19 | 92.0 |
MS.gene43716.t1 | AT5G55580 | 23.932 | 234 | 167 | 5 | 111 | 337 | 212 | 441 | 3.18e-12 | 69.3 |
MS.gene43716.t1 | AT1G61970 | 25.843 | 356 | 245 | 9 | 127 | 473 | 61 | 406 | 4.07e-17 | 84.0 |
MS.gene43716.t1 | AT1G61970 | 25.843 | 356 | 245 | 9 | 127 | 473 | 61 | 406 | 4.07e-17 | 84.0 |
MS.gene43716.t1 | AT1G61970 | 25.843 | 356 | 245 | 9 | 127 | 473 | 61 | 406 | 4.07e-17 | 84.0 |
MS.gene43716.t1 | AT1G61970 | 25.843 | 356 | 245 | 9 | 127 | 473 | 61 | 406 | 4.07e-17 | 84.0 |
MS.gene43716.t1 | AT1G61970 | 25.843 | 356 | 245 | 9 | 127 | 473 | 61 | 406 | 4.07e-17 | 84.0 |
MS.gene43716.t1 | AT1G61970 | 25.843 | 356 | 245 | 9 | 127 | 473 | 61 | 406 | 4.07e-17 | 84.0 |
MS.gene43716.t1 | AT1G61970 | 25.843 | 356 | 245 | 9 | 127 | 473 | 61 | 406 | 4.07e-17 | 84.0 |
MS.gene43716.t1 | AT2G34620 | 26.006 | 323 | 193 | 7 | 145 | 463 | 12 | 292 | 5.56e-17 | 82.0 |
MS.gene43716.t1 | AT5G55580 | 23.711 | 194 | 141 | 4 | 151 | 340 | 185 | 375 | 6.56e-14 | 73.9 |
MS.gene43716.t1 | AT1G62120 | 22.378 | 286 | 186 | 6 | 189 | 441 | 91 | 373 | 4.61e-13 | 71.6 |
MS.gene43716.t1 | AT1G61980 | 22.930 | 314 | 201 | 9 | 189 | 464 | 87 | 397 | 1.64e-12 | 69.7 |
MS.gene43716.t1 | AT1G61980 | 22.930 | 314 | 201 | 9 | 189 | 464 | 87 | 397 | 1.64e-12 | 69.7 |
MS.gene43716.t1 | AT1G61980 | 22.930 | 314 | 201 | 9 | 189 | 464 | 87 | 397 | 1.64e-12 | 69.7 |
MS.gene43716.t1 | AT3G18870 | 27.517 | 149 | 104 | 2 | 314 | 461 | 123 | 268 | 5.16e-12 | 67.0 |
MS.gene43716.t1 | AT2G03050 | 24.510 | 204 | 149 | 5 | 265 | 465 | 71 | 272 | 3.10e-11 | 64.7 |
MS.gene43716.t1 | AT2G03050 | 24.510 | 204 | 149 | 5 | 265 | 465 | 72 | 273 | 3.28e-11 | 64.7 |
MS.gene43716.t1 | AT5G54180 | 24.051 | 395 | 232 | 11 | 94 | 466 | 145 | 493 | 5.90e-11 | 65.1 |
Find 128 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACTAGATTCCCGGAGATTT+TGG | 0.122651 | 5.1:-53531850 | MS.gene43716:CDS |
GCTTGATTACCTTGGTAAAT+TGG | 0.181028 | 5.1:-53532120 | MS.gene43716:CDS |
GAGACACAACCTTATATTCT+TGG | 0.218625 | 5.1:-53531741 | MS.gene43716:CDS |
AATTGCCATGTAATTGTATT+AGG | 0.259846 | 5.1:-53532523 | MS.gene43716:CDS |
TTCCCAGCATTCTTCACTTA+TGG | 0.279890 | 5.1:-53531315 | MS.gene43716:CDS |
GGAAAGGCCTTTGGTAGATT+TGG | 0.285905 | 5.1:-53531343 | MS.gene43716:CDS |
TTATATTCTTGGATTCGATT+TGG | 0.301999 | 5.1:-53531730 | MS.gene43716:CDS |
ACATCTGTTGCTTATTTGAT+TGG | 0.305827 | 5.1:-53531909 | MS.gene43716:CDS |
GCTCAATTCTGTGCTTGATT+TGG | 0.309060 | 5.1:-53531571 | MS.gene43716:CDS |
AGCATTCTTCACTTATGGTT+TGG | 0.313050 | 5.1:-53531310 | MS.gene43716:CDS |
AGTTTGAATCCCAACACTTC+AGG | 0.346326 | 5.1:+53531948 | None:intergenic |
GCCGGTGGTCAAGTATCTTC+AGG | 0.347359 | 5.1:-53532018 | MS.gene43716:CDS |
TTCATAACATCAACCGTAAC+AGG | 0.355753 | 5.1:+53532245 | None:intergenic |
GAATGACCAAATGTTAGAAT+TGG | 0.365180 | 5.1:+53532575 | None:intergenic |
GGACTATGACACTATTGATA+TGG | 0.372055 | 5.1:-53531184 | MS.gene43716:CDS |
GATTTGGATGTTGAGGATTT+CGG | 0.372881 | 5.1:-53531555 | MS.gene43716:CDS |
AAGATTCAATGTTCTGTTGC+TGG | 0.373247 | 5.1:-53532482 | MS.gene43716:CDS |
ACCTTGGTAAATTGGGAGTT+AGG | 0.378790 | 5.1:-53532112 | MS.gene43716:CDS |
AAAATGCCAATTCTAACATT+TGG | 0.379697 | 5.1:-53532581 | MS.gene43716:CDS |
CTTGATTACCTTGGTAAATT+GGG | 0.382917 | 5.1:-53532119 | MS.gene43716:CDS |
AAATCGAATCCAAGAATATA+AGG | 0.400009 | 5.1:+53531732 | None:intergenic |
ACCCGCATCCCCAAAATCTC+CGG | 0.400611 | 5.1:+53531840 | None:intergenic |
TAACAACTATCCTCTTGTAC+TGG | 0.404481 | 5.1:-53532174 | MS.gene43716:CDS |
TGGCGAAATTCAAAGGAAAC+GGG | 0.417191 | 5.1:-53532402 | MS.gene43716:CDS |
AGGCATCTTAACTAGATTCC+CGG | 0.419846 | 5.1:-53531859 | MS.gene43716:CDS |
TGATATGGAAGAGATGGAAA+TGG | 0.426007 | 5.1:-53531169 | MS.gene43716:CDS |
TATGAGTTCTTGCGAGGAAT+CGG | 0.426180 | 5.1:-53532302 | MS.gene43716:CDS |
ATGTAGTGTCAAGAAGAATA+TGG | 0.433633 | 5.1:-53532150 | MS.gene43716:CDS |
GACCGGTGCTGCTGATTCGC+GGG | 0.440005 | 5.1:-53532441 | MS.gene43716:CDS |
TATCTGCAAGCTTCGGCTCT+AGG | 0.443828 | 5.1:+53531604 | None:intergenic |
GTAATTGTATTAGGAAGATA+AGG | 0.444282 | 5.1:-53532514 | MS.gene43716:CDS |
GTGGAGTATCTGGAAAGCTT+GGG | 0.446638 | 5.1:-53531795 | MS.gene43716:CDS |
GTTGCTTATTTGATTGGAAT+CGG | 0.449333 | 5.1:-53531903 | MS.gene43716:CDS |
GCTCAGTATCCTGACATCAT+TGG | 0.449340 | 5.1:-53531633 | MS.gene43716:CDS |
TCAAGACCATCAAGTTCATC+AGG | 0.450633 | 5.1:+53532272 | None:intergenic |
TGTGGAGTATCTGGAAAGCT+TGG | 0.452920 | 5.1:-53531796 | MS.gene43716:CDS |
CTGGTAGGACGTATAGTTAT+AGG | 0.454647 | 5.1:-53532463 | MS.gene43716:CDS |
ATTGTTCCTGATGAACTTGA+TGG | 0.456166 | 5.1:-53532278 | MS.gene43716:CDS |
AATTTCGCCAGAGTCCCGTT+TGG | 0.461902 | 5.1:+53532415 | None:intergenic |
CTGGCGAAATTCAAAGGAAA+CGG | 0.464517 | 5.1:-53532403 | MS.gene43716:CDS |
CCGGTGGTCAAGTATCTTCA+GGG | 0.466032 | 5.1:-53532017 | MS.gene43716:CDS |
CGGGGATCCAAACGGGACTC+TGG | 0.468895 | 5.1:-53532422 | MS.gene43716:CDS |
TGATTCGCGGGGATCCAAAC+GGG | 0.468998 | 5.1:-53532429 | MS.gene43716:CDS |
GAGAGGTATCCTGAAGTGTT+GGG | 0.470423 | 5.1:-53531957 | MS.gene43716:CDS |
CACTATTGATATGGAAGAGA+TGG | 0.470517 | 5.1:-53531175 | MS.gene43716:CDS |
GCCGAACATTAAACTCTTCG+AGG | 0.470544 | 5.1:+53531679 | None:intergenic |
CTTTCCAGATACTCCACAAA+AGG | 0.473709 | 5.1:+53531801 | None:intergenic |
CTTCTCTTATCTGCAAGCTT+CGG | 0.475890 | 5.1:+53531597 | None:intergenic |
CATAACATGGTTGCTAAGAA+AGG | 0.477153 | 5.1:-53531267 | MS.gene43716:CDS |
GCTTCATTCTAGTGTGGTTG+TGG | 0.477857 | 5.1:-53532048 | MS.gene43716:CDS |
AAACCATAAGTGAAGAATGC+TGG | 0.479920 | 5.1:+53531312 | None:intergenic |
GAAAGGATTGAAGTGTTCTC+TGG | 0.480186 | 5.1:-53531250 | MS.gene43716:CDS |
GGACCGGTGCTGCTGATTCG+CGG | 0.485919 | 5.1:-53532442 | MS.gene43716:CDS |
CCCTCGAAGAGTTTAATGTT+CGG | 0.492782 | 5.1:-53531680 | MS.gene43716:CDS |
CTGATTCGCGGGGATCCAAA+CGG | 0.493660 | 5.1:-53532430 | MS.gene43716:CDS |
CAAATGAGGAAGATGATTGT+TGG | 0.494500 | 5.1:-53531435 | MS.gene43716:CDS |
GTGTTGGGATTCAAACTTGA+GGG | 0.498220 | 5.1:-53531942 | MS.gene43716:CDS |
AAGTGAGATGGAAAGGCCTT+TGG | 0.499414 | 5.1:-53531352 | MS.gene43716:CDS |
ATCTGAAATTAAGAAAGATA+AGG | 0.501088 | 5.1:-53532345 | MS.gene43716:CDS |
AATGAATTCATGTCAAATGA+TGG | 0.505787 | 5.1:+53531144 | None:intergenic |
GTTCCTGTGCTTGATTACCT+TGG | 0.506625 | 5.1:-53532128 | MS.gene43716:CDS |
TCAGGGGATGGATATCAAAC+CGG | 0.510690 | 5.1:-53532000 | MS.gene43716:CDS |
AAGGCCTTTCCATCTCACTT+TGG | 0.510909 | 5.1:+53531355 | None:intergenic |
TGAGAGGTATCCTGAAGTGT+TGG | 0.512556 | 5.1:-53531958 | MS.gene43716:CDS |
CCACGTTAACGCAGTTCTTG+CGG | 0.514225 | 5.1:-53532085 | MS.gene43716:CDS |
TGTTACGGTTGATGTTATGA+AGG | 0.514841 | 5.1:-53532243 | MS.gene43716:CDS |
TGGTCTTGAACTTCCTGTTA+CGG | 0.514972 | 5.1:-53532258 | MS.gene43716:CDS |
GAATCTGATTCATCGCTCCT+TGG | 0.517997 | 5.1:+53531114 | None:intergenic |
TTAGCAACCATGTTATGCCT+AGG | 0.519862 | 5.1:+53531273 | None:intergenic |
AGTCTAGCAATAGCTAGCCT+TGG | 0.521140 | 5.1:+53531768 | None:intergenic |
TGTTTAAAGCAAGTAGTTGA+GGG | 0.521469 | 5.1:+53531409 | None:intergenic |
TGTGCTTGATTTGGATGTTG+AGG | 0.522040 | 5.1:-53531562 | MS.gene43716:CDS |
AGGTCGGTTCCAATGATGTC+AGG | 0.523721 | 5.1:+53531624 | None:intergenic |
AACCATAAGTGAAGAATGCT+GGG | 0.531139 | 5.1:+53531313 | None:intergenic |
AATTTCAGATAAACTCGGAC+GGG | 0.532219 | 5.1:+53532358 | None:intergenic |
CCCGCATCCCCAAAATCTCC+GGG | 0.534445 | 5.1:+53531841 | None:intergenic |
ATCTTCCTAATACAATTACA+TGG | 0.538869 | 5.1:+53532518 | None:intergenic |
TCCCCGCGAATCAGCAGCAC+CGG | 0.539690 | 5.1:+53532439 | None:intergenic |
TGCAAGCTTCGGCTCTAGGT+CGG | 0.547317 | 5.1:+53531608 | None:intergenic |
AATTCAAAGGAAACGGGGAG+GGG | 0.548403 | 5.1:-53532396 | MS.gene43716:CDS |
CGATTACTTCCAAAGTGAGA+TGG | 0.549323 | 5.1:-53531364 | MS.gene43716:CDS |
GGGACTCTGGCGAAATTCAA+AGG | 0.550251 | 5.1:-53532409 | MS.gene43716:CDS |
TTCTTAATTTCAGATAAACT+CGG | 0.551846 | 5.1:+53532353 | None:intergenic |
AAATTCAAAGGAAACGGGGA+GGG | 0.552308 | 5.1:-53532397 | MS.gene43716:CDS |
TATTTGATTGGAATCGGTGT+TGG | 0.555605 | 5.1:-53531897 | MS.gene43716:CDS |
ATGTTTAAAGCAAGTAGTTG+AGG | 0.555715 | 5.1:+53531408 | None:intergenic |
CCCTGAAGATACTTGACCAC+CGG | 0.559238 | 5.1:+53532017 | None:intergenic |
AACAACTATCCTCTTGTACT+GGG | 0.560648 | 5.1:-53532173 | MS.gene43716:CDS |
CCGCAAGAACTGCGTTAACG+TGG | 0.564848 | 5.1:+53532085 | None:intergenic |
AGGATACTGAGCAATTATAG+AGG | 0.570014 | 5.1:+53531644 | None:intergenic |
ACACTAGAATGAAGCACTTG+TGG | 0.573884 | 5.1:+53532056 | None:intergenic |
AAATCAACGTGCTTCAGCAT+AGG | 0.578326 | 5.1:+53531486 | None:intergenic |
ACACTACATCCCAGTACAAG+AGG | 0.579075 | 5.1:+53532164 | None:intergenic |
GGTCAAGTATCTTCAGGGGA+TGG | 0.581823 | 5.1:-53532012 | MS.gene43716:CDS |
TGTGGTTGTGGATCTTGTGC+CGG | 0.581899 | 5.1:-53532036 | MS.gene43716:CDS |
ACTTCCAAAGTGAGATGGAA+AGG | 0.582725 | 5.1:-53531359 | MS.gene43716:CDS |
TGAATTCATTGATGCGGCCA+AGG | 0.585206 | 5.1:-53531131 | MS.gene43716:CDS |
TTGACATGAATTCATTGATG+CGG | 0.585388 | 5.1:-53531137 | MS.gene43716:CDS |
ATATTCCTCGTGTTCTTGAG+AGG | 0.588108 | 5.1:-53531974 | MS.gene43716:CDS |
TGAGAAATTTGAGCAACGAA+TGG | 0.590339 | 5.1:-53531205 | MS.gene43716:CDS |
AGAACACGAGGAATATCATC+CGG | 0.593566 | 5.1:+53531981 | None:intergenic |
GATTGAAGTGTTCTCTGGCA+TGG | 0.595640 | 5.1:-53531245 | MS.gene43716:CDS |
ATAAGCAACAGATGTACTCA+TGG | 0.595928 | 5.1:+53531917 | None:intergenic |
TCCTAACTCCCAATTTACCA+AGG | 0.597942 | 5.1:+53532111 | None:intergenic |
CCGAACATTAAACTCTTCGA+GGG | 0.604717 | 5.1:+53531680 | None:intergenic |
AGGACGTATAGTTATAGGAC+CGG | 0.612646 | 5.1:-53532458 | MS.gene43716:CDS |
TTACCAAGGTAATCAAGCAC+AGG | 0.615617 | 5.1:+53532125 | None:intergenic |
TTCAATGTTCTGTTGCTGGT+AGG | 0.617163 | 5.1:-53532478 | MS.gene43716:CDS |
TGGAAAGCTTGGGTATTCCA+AGG | 0.618103 | 5.1:-53531785 | MS.gene43716:CDS |
AACTCAACCAAATCTACCAA+AGG | 0.619874 | 5.1:+53531336 | None:intergenic |
TAATTTCAGATAAACTCGGA+CGG | 0.623058 | 5.1:+53532357 | None:intergenic |
ACAAGTGCTTCATTCTAGTG+TGG | 0.623981 | 5.1:-53532054 | MS.gene43716:CDS |
ATTGTTTATGAGTTCTTGCG+AGG | 0.628501 | 5.1:-53532308 | MS.gene43716:CDS |
TGGAGTCAACTATAAAACCT+AGG | 0.628708 | 5.1:-53531290 | MS.gene43716:CDS |
ACCGGTGCTGCTGATTCGCG+GGG | 0.640590 | 5.1:-53532440 | MS.gene43716:CDS |
TATAAAACCTAGGCATAACA+TGG | 0.645601 | 5.1:-53531280 | MS.gene43716:CDS |
AATCATTGAGAAGATGCCGC+AGG | 0.648015 | 5.1:-53531529 | MS.gene43716:CDS |
GGTGTTGGAAGAAGAGAACT+CGG | 0.656801 | 5.1:-53531882 | MS.gene43716:CDS |
CGGTGGTCAAGTATCTTCAG+GGG | 0.659657 | 5.1:-53532016 | MS.gene43716:CDS |
AGTGTTGGGATTCAAACTTG+AGG | 0.668806 | 5.1:-53531943 | MS.gene43716:CDS |
GGTTGTGGATCTTGTGCCGG+TGG | 0.671700 | 5.1:-53532033 | MS.gene43716:CDS |
GAAATTCAAAGGAAACGGGG+AGG | 0.688989 | 5.1:-53532398 | MS.gene43716:CDS |
TCAGCATAGGTGTAGTACTG+AGG | 0.702066 | 5.1:+53531499 | None:intergenic |
ATAAACAATTTCACGCAACG+TGG | 0.704806 | 5.1:+53532322 | None:intergenic |
GGCGAAATTCAAAGGAAACG+GGG | 0.719631 | 5.1:-53532401 | MS.gene43716:CDS |
GTACTGAGGCTAACTACCTG+CGG | 0.724109 | 5.1:+53531513 | None:intergenic |
GGATACCTCTCAAGAACACG+AGG | 0.733931 | 5.1:+53531969 | None:intergenic |
GTTGGAAGAAGAGAACTCGG+AGG | 0.795387 | 5.1:-53531879 | MS.gene43716:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTCTTAATTTCAGATAAACT+CGG | + | chr5.1:53531287-53531306 | None:intergenic | 20.0% |
!!! | ATCTGAAATTAAGAAAGATA+AGG | - | chr5.1:53531292-53531311 | MS.gene43716:CDS | 20.0% |
! | AAATCGAATCCAAGAATATA+AGG | + | chr5.1:53531908-53531927 | None:intergenic | 25.0% |
! | AATGAATTCATGTCAAATGA+TGG | + | chr5.1:53532496-53532515 | None:intergenic | 25.0% |
! | AATTGCCATGTAATTGTATT+AGG | - | chr5.1:53531114-53531133 | MS.gene43716:CDS | 25.0% |
! | ATCTTCCTAATACAATTACA+TGG | + | chr5.1:53531122-53531141 | None:intergenic | 25.0% |
! | GTAATTGTATTAGGAAGATA+AGG | - | chr5.1:53531123-53531142 | MS.gene43716:CDS | 25.0% |
! | TTATATTCTTGGATTCGATT+TGG | - | chr5.1:53531907-53531926 | MS.gene43716:CDS | 25.0% |
!! | TTGATTTTCTTAAGGATTGT+GGG | - | chr5.1:53532167-53532186 | MS.gene43716:CDS | 25.0% |
ATGTAGTGTCAAGAAGAATA+TGG | - | chr5.1:53531487-53531506 | MS.gene43716:CDS | 30.0% | |
CTTGATTACCTTGGTAAATT+GGG | - | chr5.1:53531518-53531537 | MS.gene43716:CDS | 30.0% | |
GAATGACCAAATGTTAGAAT+TGG | + | chr5.1:53531065-53531084 | None:intergenic | 30.0% | |
GTTGCTTATTTGATTGGAAT+CGG | - | chr5.1:53531734-53531753 | MS.gene43716:CDS | 30.0% | |
TAATTTCAGATAAACTCGGA+CGG | + | chr5.1:53531283-53531302 | None:intergenic | 30.0% | |
TATAAAACCTAGGCATAACA+TGG | - | chr5.1:53532357-53532376 | MS.gene43716:CDS | 30.0% | |
TTGACATGAATTCATTGATG+CGG | - | chr5.1:53532500-53532519 | MS.gene43716:CDS | 30.0% | |
! | ACATCTGTTGCTTATTTGAT+TGG | - | chr5.1:53531728-53531747 | MS.gene43716:CDS | 30.0% |
! | ATGTTTAAAGCAAGTAGTTG+AGG | + | chr5.1:53532232-53532251 | None:intergenic | 30.0% |
! | TGTTTAAAGCAAGTAGTTGA+GGG | + | chr5.1:53532231-53532250 | None:intergenic | 30.0% |
! | TTGATTTTCTTCACAGTTTG+GGG | - | chr5.1:53531423-53531442 | MS.gene43716:CDS | 30.0% |
!! | GTTGATTTTCTTAAGGATTG+TGG | - | chr5.1:53532166-53532185 | MS.gene43716:CDS | 30.0% |
!! | GTTGATTTTCTTCACAGTTT+GGG | - | chr5.1:53531422-53531441 | MS.gene43716:CDS | 30.0% |
!!! | TGTTGATTTTCTTCACAGTT+TGG | - | chr5.1:53531421-53531440 | MS.gene43716:CDS | 30.0% |
AAACCATAAGTGAAGAATGC+TGG | + | chr5.1:53532328-53532347 | None:intergenic | 35.0% | |
AACAACTATCCTCTTGTACT+GGG | - | chr5.1:53531464-53531483 | MS.gene43716:CDS | 35.0% | |
AACCATAAGTGAAGAATGCT+GGG | + | chr5.1:53532327-53532346 | None:intergenic | 35.0% | |
AACTCAACCAAATCTACCAA+AGG | + | chr5.1:53532304-53532323 | None:intergenic | 35.0% | |
AAGATTCAATGTTCTGTTGC+TGG | - | chr5.1:53531155-53531174 | MS.gene43716:CDS | 35.0% | |
AATTTCAGATAAACTCGGAC+GGG | + | chr5.1:53531282-53531301 | None:intergenic | 35.0% | |
AGCATTCTTCACTTATGGTT+TGG | - | chr5.1:53532327-53532346 | MS.gene43716:CDS | 35.0% | |
AGGATACTGAGCAATTATAG+AGG | + | chr5.1:53531996-53532015 | None:intergenic | 35.0% | |
ATAAACAATTTCACGCAACG+TGG | + | chr5.1:53531318-53531337 | None:intergenic | 35.0% | |
ATAAGCAACAGATGTACTCA+TGG | + | chr5.1:53531723-53531742 | None:intergenic | 35.0% | |
ATTGTTCCTGATGAACTTGA+TGG | - | chr5.1:53531359-53531378 | MS.gene43716:CDS | 35.0% | |
ATTGTTTATGAGTTCTTGCG+AGG | - | chr5.1:53531329-53531348 | MS.gene43716:CDS | 35.0% | |
CAAATGAGGAAGATGATTGT+TGG | - | chr5.1:53532202-53532221 | MS.gene43716:CDS | 35.0% | |
CACTATTGATATGGAAGAGA+TGG | - | chr5.1:53532462-53532481 | MS.gene43716:CDS | 35.0% | |
CATAACATGGTTGCTAAGAA+AGG | - | chr5.1:53532370-53532389 | MS.gene43716:CDS | 35.0% | |
GAGACACAACCTTATATTCT+TGG | - | chr5.1:53531896-53531915 | MS.gene43716:CDS | 35.0% | |
GATTTGGATGTTGAGGATTT+CGG | - | chr5.1:53532082-53532101 | MS.gene43716:CDS | 35.0% | |
GCTTGATTACCTTGGTAAAT+TGG | - | chr5.1:53531517-53531536 | MS.gene43716:CDS | 35.0% | |
GGACTATGACACTATTGATA+TGG | - | chr5.1:53532453-53532472 | MS.gene43716:CDS | 35.0% | |
TAACAACTATCCTCTTGTAC+TGG | - | chr5.1:53531463-53531482 | MS.gene43716:CDS | 35.0% | |
TATTTGATTGGAATCGGTGT+TGG | - | chr5.1:53531740-53531759 | MS.gene43716:CDS | 35.0% | |
TGAGAAATTTGAGCAACGAA+TGG | - | chr5.1:53532432-53532451 | MS.gene43716:CDS | 35.0% | |
TGATATGGAAGAGATGGAAA+TGG | - | chr5.1:53532468-53532487 | MS.gene43716:CDS | 35.0% | |
TGGAGTCAACTATAAAACCT+AGG | - | chr5.1:53532347-53532366 | MS.gene43716:CDS | 35.0% | |
TTCATAACATCAACCGTAAC+AGG | + | chr5.1:53531395-53531414 | None:intergenic | 35.0% | |
! | TGTTACGGTTGATGTTATGA+AGG | - | chr5.1:53531394-53531413 | MS.gene43716:CDS | 35.0% |
!!! | GAAGCACGTTGATTTTCTTA+AGG | - | chr5.1:53532159-53532178 | MS.gene43716:CDS | 35.0% |
AAATCAACGTGCTTCAGCAT+AGG | + | chr5.1:53532154-53532173 | None:intergenic | 40.0% | |
AAATTCAAAGGAAACGGGGA+GGG | - | chr5.1:53531240-53531259 | MS.gene43716:CDS | 40.0% | |
ACAAGTGCTTCATTCTAGTG+TGG | - | chr5.1:53531583-53531602 | MS.gene43716:CDS | 40.0% | |
ACCTTGGTAAATTGGGAGTT+AGG | - | chr5.1:53531525-53531544 | MS.gene43716:CDS | 40.0% | |
ACTTCCAAAGTGAGATGGAA+AGG | - | chr5.1:53532278-53532297 | MS.gene43716:CDS | 40.0% | |
AGAACACGAGGAATATCATC+CGG | + | chr5.1:53531659-53531678 | None:intergenic | 40.0% | |
AGGACGTATAGTTATAGGAC+CGG | - | chr5.1:53531179-53531198 | MS.gene43716:CDS | 40.0% | |
AGGCATCTTAACTAGATTCC+CGG | - | chr5.1:53531778-53531797 | MS.gene43716:CDS | 40.0% | |
AGTTTGAATCCCAACACTTC+AGG | + | chr5.1:53531692-53531711 | None:intergenic | 40.0% | |
ATATTCCTCGTGTTCTTGAG+AGG | - | chr5.1:53531663-53531682 | MS.gene43716:CDS | 40.0% | |
CCCTCGAAGAGTTTAATGTT+CGG | - | chr5.1:53531957-53531976 | MS.gene43716:CDS | 40.0% | |
CCGAACATTAAACTCTTCGA+GGG | + | chr5.1:53531960-53531979 | None:intergenic | 40.0% | |
CGATTACTTCCAAAGTGAGA+TGG | - | chr5.1:53532273-53532292 | MS.gene43716:CDS | 40.0% | |
CTGGCGAAATTCAAAGGAAA+CGG | - | chr5.1:53531234-53531253 | MS.gene43716:CDS | 40.0% | |
CTGGTAGGACGTATAGTTAT+AGG | - | chr5.1:53531174-53531193 | MS.gene43716:CDS | 40.0% | |
CTTCTCTTATCTGCAAGCTT+CGG | + | chr5.1:53532043-53532062 | None:intergenic | 40.0% | |
CTTTCCAGATACTCCACAAA+AGG | + | chr5.1:53531839-53531858 | None:intergenic | 40.0% | |
GCTCAATTCTGTGCTTGATT+TGG | - | chr5.1:53532066-53532085 | MS.gene43716:CDS | 40.0% | |
GTGTTGGGATTCAAACTTGA+GGG | - | chr5.1:53531695-53531714 | MS.gene43716:CDS | 40.0% | |
TATGAGTTCTTGCGAGGAAT+CGG | - | chr5.1:53531335-53531354 | MS.gene43716:CDS | 40.0% | |
TCAAGACCATCAAGTTCATC+AGG | + | chr5.1:53531368-53531387 | None:intergenic | 40.0% | |
TCCTAACTCCCAATTTACCA+AGG | + | chr5.1:53531529-53531548 | None:intergenic | 40.0% | |
TGGCGAAATTCAAAGGAAAC+GGG | - | chr5.1:53531235-53531254 | MS.gene43716:CDS | 40.0% | |
TTACCAAGGTAATCAAGCAC+AGG | + | chr5.1:53531515-53531534 | None:intergenic | 40.0% | |
TTAGCAACCATGTTATGCCT+AGG | + | chr5.1:53532367-53532386 | None:intergenic | 40.0% | |
TTCAATGTTCTGTTGCTGGT+AGG | - | chr5.1:53531159-53531178 | MS.gene43716:CDS | 40.0% | |
TTCCCAGCATTCTTCACTTA+TGG | - | chr5.1:53532322-53532341 | MS.gene43716:CDS | 40.0% | |
! | AACTAGATTCCCGGAGATTT+TGG | - | chr5.1:53531787-53531806 | MS.gene43716:CDS | 40.0% |
! | ACACTAGAATGAAGCACTTG+TGG | + | chr5.1:53531584-53531603 | None:intergenic | 40.0% |
! | ACTAGATTCCCGGAGATTTT+GGG | - | chr5.1:53531788-53531807 | MS.gene43716:CDS | 40.0% |
! | AGTGTTGGGATTCAAACTTG+AGG | - | chr5.1:53531694-53531713 | MS.gene43716:CDS | 40.0% |
! | GAAAGGATTGAAGTGTTCTC+TGG | - | chr5.1:53532387-53532406 | MS.gene43716:CDS | 40.0% |
! | GGTTTTCTGTGGATCAAATG+AGG | - | chr5.1:53532188-53532207 | MS.gene43716:CDS | 40.0% |
! | TAAGGATTGTGGGTTTTCTG+TGG | - | chr5.1:53532177-53532196 | MS.gene43716:CDS | 40.0% |
! | TAGAGTCATCAAGCCTTTTG+TGG | - | chr5.1:53531823-53531842 | MS.gene43716:CDS | 40.0% |
! | TGGTCTTGAACTTCCTGTTA+CGG | - | chr5.1:53531379-53531398 | MS.gene43716:CDS | 40.0% |
!! | TGTGCTTGATTTGGATGTTG+AGG | - | chr5.1:53532075-53532094 | MS.gene43716:CDS | 40.0% |
AAGGCCTTTCCATCTCACTT+TGG | + | chr5.1:53532285-53532304 | None:intergenic | 45.0% | |
AAGTGAGATGGAAAGGCCTT+TGG | - | chr5.1:53532285-53532304 | MS.gene43716:CDS | 45.0% | |
AATCATTGAGAAGATGCCGC+AGG | - | chr5.1:53532108-53532127 | MS.gene43716:CDS | 45.0% | |
AATTCAAAGGAAACGGGGAG+GGG | - | chr5.1:53531241-53531260 | MS.gene43716:CDS | 45.0% | |
ACACTACATCCCAGTACAAG+AGG | + | chr5.1:53531476-53531495 | None:intergenic | 45.0% | |
GAAATTCAAAGGAAACGGGG+AGG | - | chr5.1:53531239-53531258 | MS.gene43716:CDS | 45.0% | |
GAATCTGATTCATCGCTCCT+TGG | + | chr5.1:53532526-53532545 | None:intergenic | 45.0% | |
GCCGAACATTAAACTCTTCG+AGG | + | chr5.1:53531961-53531980 | None:intergenic | 45.0% | |
GCTCAGTATCCTGACATCAT+TGG | - | chr5.1:53532004-53532023 | MS.gene43716:CDS | 45.0% | |
GCTTCATTCTAGTGTGGTTG+TGG | - | chr5.1:53531589-53531608 | MS.gene43716:CDS | 45.0% | |
GGAAAGGCCTTTGGTAGATT+TGG | - | chr5.1:53532294-53532313 | MS.gene43716:CDS | 45.0% | |
GGCGAAATTCAAAGGAAACG+GGG | - | chr5.1:53531236-53531255 | MS.gene43716:CDS | 45.0% | |
GTTCCTGTGCTTGATTACCT+TGG | - | chr5.1:53531509-53531528 | MS.gene43716:CDS | 45.0% | |
TCAGCATAGGTGTAGTACTG+AGG | + | chr5.1:53532141-53532160 | None:intergenic | 45.0% | |
TCAGGGGATGGATATCAAAC+CGG | - | chr5.1:53531637-53531656 | MS.gene43716:CDS | 45.0% | |
TGAATTCATTGATGCGGCCA+AGG | - | chr5.1:53532506-53532525 | MS.gene43716:CDS | 45.0% | |
TGGAAAGCTTGGGTATTCCA+AGG | - | chr5.1:53531852-53531871 | MS.gene43716:CDS | 45.0% | |
! | AGTCTAGCAATAGCTAGCCT+TGG | + | chr5.1:53531872-53531891 | None:intergenic | 45.0% |
! | CTAGATTCCCGGAGATTTTG+GGG | - | chr5.1:53531789-53531808 | MS.gene43716:CDS | 45.0% |
! | GATTGAAGTGTTCTCTGGCA+TGG | - | chr5.1:53532392-53532411 | MS.gene43716:CDS | 45.0% |
! | GGTGTTGGAAGAAGAGAACT+CGG | - | chr5.1:53531755-53531774 | MS.gene43716:CDS | 45.0% |
! | GTGGAGTATCTGGAAAGCTT+GGG | - | chr5.1:53531842-53531861 | MS.gene43716:CDS | 45.0% |
! | TGTGGAGTATCTGGAAAGCT+TGG | - | chr5.1:53531841-53531860 | MS.gene43716:CDS | 45.0% |
!! | CAAGCCTTTTGTGGAGTATC+TGG | - | chr5.1:53531832-53531851 | MS.gene43716:CDS | 45.0% |
!! | GAGAGGTATCCTGAAGTGTT+GGG | - | chr5.1:53531680-53531699 | MS.gene43716:CDS | 45.0% |
!! | TGAGAGGTATCCTGAAGTGT+TGG | - | chr5.1:53531679-53531698 | MS.gene43716:CDS | 45.0% |
AATTTCGCCAGAGTCCCGTT+TGG | + | chr5.1:53531225-53531244 | None:intergenic | 50.0% | |
CCACGTTAACGCAGTTCTTG+CGG | - | chr5.1:53531552-53531571 | MS.gene43716:CDS | 50.0% | |
CCCTGAAGATACTTGACCAC+CGG | + | chr5.1:53531623-53531642 | None:intergenic | 50.0% | |
CCGGTGGTCAAGTATCTTCA+GGG | - | chr5.1:53531620-53531639 | MS.gene43716:CDS | 50.0% | |
CGGTGGTCAAGTATCTTCAG+GGG | - | chr5.1:53531621-53531640 | MS.gene43716:CDS | 50.0% | |
GGATACCTCTCAAGAACACG+AGG | + | chr5.1:53531671-53531690 | None:intergenic | 50.0% | |
GGGACTCTGGCGAAATTCAA+AGG | - | chr5.1:53531228-53531247 | MS.gene43716:CDS | 50.0% | |
GGTCAAGTATCTTCAGGGGA+TGG | - | chr5.1:53531625-53531644 | MS.gene43716:CDS | 50.0% | |
GTACTGAGGCTAACTACCTG+CGG | + | chr5.1:53532127-53532146 | None:intergenic | 50.0% | |
GTTGGAAGAAGAGAACTCGG+AGG | - | chr5.1:53531758-53531777 | MS.gene43716:CDS | 50.0% | |
TATCTGCAAGCTTCGGCTCT+AGG | + | chr5.1:53532036-53532055 | None:intergenic | 50.0% | |
TGTGGTTGTGGATCTTGTGC+CGG | - | chr5.1:53531601-53531620 | MS.gene43716:CDS | 50.0% | |
! | AGGTCGGTTCCAATGATGTC+AGG | + | chr5.1:53532016-53532035 | None:intergenic | 50.0% |
ACCCGCATCCCCAAAATCTC+CGG | + | chr5.1:53531800-53531819 | None:intergenic | 55.0% | |
CCGCAAGAACTGCGTTAACG+TGG | + | chr5.1:53531555-53531574 | None:intergenic | 55.0% | |
GCCGGTGGTCAAGTATCTTC+AGG | - | chr5.1:53531619-53531638 | MS.gene43716:CDS | 55.0% | |
TGATTCGCGGGGATCCAAAC+GGG | - | chr5.1:53531208-53531227 | MS.gene43716:CDS | 55.0% | |
! | CTGATTCGCGGGGATCCAAA+CGG | - | chr5.1:53531207-53531226 | MS.gene43716:CDS | 55.0% |
!! | GAGATTTTGGGGATGCGGGT+TGG | - | chr5.1:53531800-53531819 | MS.gene43716:CDS | 55.0% |
!! | TCCCGGAGATTTTGGGGATG+CGG | - | chr5.1:53531795-53531814 | MS.gene43716:CDS | 55.0% |
!! | TGCAAGCTTCGGCTCTAGGT+CGG | + | chr5.1:53532032-53532051 | None:intergenic | 55.0% |
CCCGCATCCCCAAAATCTCC+GGG | + | chr5.1:53531799-53531818 | None:intergenic | 60.0% | |
GGTTGTGGATCTTGTGCCGG+TGG | - | chr5.1:53531604-53531623 | MS.gene43716:CDS | 60.0% | |
!! | CCCGGAGATTTTGGGGATGC+GGG | - | chr5.1:53531796-53531815 | MS.gene43716:CDS | 60.0% |
CGGGGATCCAAACGGGACTC+TGG | - | chr5.1:53531215-53531234 | MS.gene43716:CDS | 65.0% | |
TCCCCGCGAATCAGCAGCAC+CGG | + | chr5.1:53531201-53531220 | None:intergenic | 65.0% | |
!! | ACCGGTGCTGCTGATTCGCG+GGG | - | chr5.1:53531197-53531216 | MS.gene43716:CDS | 65.0% |
!! | GACCGGTGCTGCTGATTCGC+GGG | - | chr5.1:53531196-53531215 | MS.gene43716:CDS | 65.0% |
!! | GGACCGGTGCTGCTGATTCG+CGG | - | chr5.1:53531195-53531214 | MS.gene43716:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 53531059 | 53532600 | 53531059 | ID=MS.gene43716 |
chr5.1 | mRNA | 53531059 | 53532600 | 53531059 | ID=MS.gene43716.t1;Parent=MS.gene43716 |
chr5.1 | exon | 53531059 | 53532600 | 53531059 | ID=MS.gene43716.t1.exon1;Parent=MS.gene43716.t1 |
chr5.1 | CDS | 53531059 | 53532600 | 53531059 | ID=cds.MS.gene43716.t1;Parent=MS.gene43716.t1 |
Gene Sequence |
Protein sequence |