AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene43727


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43727.t1 MTR_5g069055 98.854 349 4 0 512 860 10 358 0.0 704
MS.gene43727.t1 MTR_5g069050 93.410 349 8 1 512 860 51 384 0.0 654
MS.gene43727.t1 MTR_1g061050 87.966 349 42 0 512 860 10 358 0.0 629
MS.gene43727.t1 MTR_5g096670 77.904 353 77 1 508 860 6 357 0.0 552
MS.gene43727.t1 MTR_4g057670 56.215 354 150 4 508 860 51 400 6.99e-126 384
MS.gene43727.t1 MTR_4g071860 56.215 354 150 4 508 860 51 400 8.47e-126 384
MS.gene43727.t1 MTR_1g109200 53.782 357 160 4 505 860 39 391 2.74e-123 377
MS.gene43727.t1 MTR_4g071880 50.980 357 152 6 508 860 49 386 1.57e-105 331
MS.gene43727.t1 MTR_7g103920 67.708 96 6 1 614 709 11 81 5.61e-34 125
MS.gene43727.t1 MTR_8g098345 37.762 143 80 3 2 141 137 273 1.99e-13 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43727.t1 AT3G52930 88.825 349 39 0 512 860 10 358 0.0 640
MS.gene43727.t1 AT2G36460 87.393 349 44 0 512 860 10 358 0.0 627
MS.gene43727.t1 AT5G03690 86.571 350 46 1 512 860 10 359 0.0 603
MS.gene43727.t1 AT5G03690 86.533 349 46 1 513 860 45 393 0.0 600
MS.gene43727.t1 AT4G26530 76.204 353 84 0 508 860 6 358 0.0 551
MS.gene43727.t1 AT4G26530 76.204 353 84 0 508 860 6 358 0.0 551
MS.gene43727.t1 AT4G26530 76.204 353 84 0 508 860 6 358 0.0 551
MS.gene43727.t1 AT4G26520 71.060 349 101 0 512 860 7 355 1.71e-171 500
MS.gene43727.t1 AT4G26520 71.060 349 101 0 512 860 7 355 1.71e-171 500
MS.gene43727.t1 AT4G26520 71.060 349 101 0 512 860 10 358 2.31e-171 500
MS.gene43727.t1 AT4G26520 71.182 347 100 0 512 858 10 356 9.43e-170 496
MS.gene43727.t1 AT2G36460 87.266 267 34 0 594 860 1 267 9.93e-167 484
MS.gene43727.t1 AT2G36460 87.266 267 34 0 594 860 1 267 9.93e-167 484
MS.gene43727.t1 AT5G03690 86.142 267 36 1 595 860 1 267 1.34e-154 453
MS.gene43727.t1 AT5G03690 86.142 267 36 1 595 860 1 267 1.34e-154 453
MS.gene43727.t1 AT2G21330 56.857 350 146 4 512 860 54 399 5.25e-126 385
MS.gene43727.t1 AT4G38970 56.571 350 147 4 512 860 53 398 8.13e-126 384
MS.gene43727.t1 AT2G01140 55.085 354 154 4 508 860 42 391 1.25e-123 378
MS.gene43727.t1 AT2G21330 54.857 350 143 5 512 860 54 389 2.11e-117 362
MS.gene43727.t1 AT4G38970 56.031 257 111 2 512 767 53 308 5.14e-89 287
MS.gene43727.t1 AT2G21330 55.686 255 111 2 512 765 54 307 1.97e-88 283

Find 224 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTCTGCATTGGAATTTAA+TGG 0.154655 5.1:-53655101 MS.gene43727:CDS
GCATTGGAATTTAATGGTTT+TGG 0.181892 5.1:-53655095 MS.gene43727:CDS
CACAAGCATCAAAGATTTAA+TGG 0.187810 5.1:-53654373 MS.gene43727:CDS
ATGTGGTGATATGGCAATTT+TGG 0.189525 5.1:-53654916 MS.gene43727:CDS
CAAAAGTAGAGTGGCTAATT+TGG 0.204253 5.1:+53653726 None:intergenic
TGGACCCTTTCCTTCTCTTT+TGG 0.209134 5.1:-53648106 MS.gene43727:CDS
GTAATAATCTTTGTCTTAAC+TGG 0.246158 5.1:+53654435 None:intergenic
TAGTGGTTCGTCAAAATTTC+CGG 0.251335 5.1:+53655187 None:intergenic
CAAATTAGCCACTCTACTTT+TGG 0.257165 5.1:-53653725 MS.gene43727:CDS
CTTACCCTTGACTTGGTTGA+TGG 0.263243 5.1:+53648135 None:intergenic
GTTATGGAACACAATCAAAA+AGG 0.273275 5.1:-53655280 MS.gene43727:CDS
CTCCAGCTCAATAAAATTCT+TGG 0.284353 5.1:+53653765 None:intergenic
CATTTCGAGTGTAGTGGTTT+TGG 0.285269 5.1:-53653824 MS.gene43727:CDS
GGCGACTCTTGGAACTTATA+AGG 0.306060 5.1:-53647981 MS.gene43727:CDS
AAATCCTTGTTGAACAGTTA+TGG 0.317791 5.1:-53655296 MS.gene43727:CDS
ACAACTTTGTCCGGTGGTTT+CGG 0.329233 5.1:+53654690 None:intergenic
TCTACGTGACAACTGCAATA+TGG 0.333401 5.1:+53654552 None:intergenic
AACAAAGCTGGTGTGCTTCC+TGG 0.336917 5.1:-53648694 MS.gene43727:CDS
CTCCATATTGGTTCTATGTA+TGG 0.337466 5.1:-53653906 MS.gene43727:CDS
CAGGTGCACGTTTCGCTAAA+TGG 0.343443 5.1:-53648567 MS.gene43727:CDS
CAAAATTTCCGGCGAATTCT+CGG 0.344124 5.1:+53655198 None:intergenic
TTTATAGTTACCTTGACTTT+TGG 0.352271 5.1:-53653966 MS.gene43727:CDS
ATGGTGTGGATTAGTGGATA+TGG 0.355002 5.1:-53653887 MS.gene43727:CDS
CACCATACATAGAACCAATA+TGG 0.358172 5.1:+53653904 None:intergenic
GAGTGCTCAGATGGCTCATT+GGG 0.370466 5.1:+53648523 None:intergenic
CAGGTGACATGCGGTGGTTT+AGG 0.376015 5.1:+53654741 None:intergenic
ATCATGATGATGAGGATAAA+TGG 0.379659 5.1:-53654075 MS.gene43727:CDS
CCACATGAAAACAATTTATC+AGG 0.379738 5.1:+53654933 None:intergenic
ACCACCACTCAGGGTCTTGA+TGG 0.384125 5.1:-53648622 MS.gene43727:CDS
TAGACGCTTTCCAATTGTTC+CGG 0.385779 5.1:+53649457 None:intergenic
ACCTTTGGTGCATCAGATCC+AGG 0.397934 5.1:+53648283 None:intergenic
GTATCCTTGTACAGGGCATC+CGG 0.398780 5.1:-53653680 MS.gene43727:CDS
ATCTGAATTTCCTTCTGCAT+TGG 0.401304 5.1:-53655111 MS.gene43727:CDS
GCTTCAAGAGAGTGCCTTCA+AGG 0.401651 5.1:+53648320 None:intergenic
GATGAGTCAACCGGAACAAT+TGG 0.403195 5.1:-53649467 MS.gene43727:CDS
ATGCTTGTGCAAATCAGTTT+AGG 0.404227 5.1:+53654387 None:intergenic
GGTGGTTTCTCCATCAGTTC+CGG 0.405974 5.1:+53648639 None:intergenic
CTGCAATATGGCGGTTTAGC+TGG 0.407037 5.1:+53654564 None:intergenic
GAGCCTGAGATCCTTGTTGA+TGG 0.408703 5.1:-53648427 MS.gene43727:CDS
TTTATCCTCATCATCATGAT+TGG 0.409966 5.1:+53654078 None:intergenic
ATTGTGGAAGTATGATCATT+TGG 0.410218 5.1:+53654490 None:intergenic
TGGTGGCAGCATAAACTTCC+AGG 0.415072 5.1:+53653992 None:intergenic
CTAGAAAACACTGTCGTTGA+TGG 0.416018 5.1:-53655167 MS.gene43727:CDS
ACAACCTCGGGTGCAACCTT+TGG 0.418995 5.1:+53648268 None:intergenic
GGTGTCCTTCAGTACCTTAG+TGG 0.421088 5.1:-53649365 MS.gene43727:CDS
AGCAGCAAGAATACCCTTGC+CGG 0.424830 5.1:+53649490 None:intergenic
AAGGGTACCGTTGAGCTTGC+CGG 0.426023 5.1:-53648658 MS.gene43727:CDS
GCTAATTCTGAGGCGACTCT+TGG 0.431168 5.1:-53647992 MS.gene43727:CDS
GATCCAGGGGTAACCATGTT+AGG 0.432972 5.1:+53648298 None:intergenic
CTGCAGCGGTGCTTTGGTAG+AGG 0.433294 5.1:+53649321 None:intergenic
ATGCATTAGTGTTAAGCAAC+TGG 0.435203 5.1:-53653800 MS.gene43727:CDS
GACCACCATGTCCTCCTTGA+AGG 0.437194 5.1:-53648334 MS.gene43727:CDS
CGTGACCTTCGAACCACCTT+GGG 0.438784 5.1:+53655244 None:intergenic
AGTACCCTCAAGGCATGGTC+TGG 0.442363 5.1:-53648067 MS.gene43727:CDS
GGAGCAATTATATATATTCC+TGG 0.442656 5.1:-53654010 MS.gene43727:CDS
TAGTGGAGTCATCCTCTTTG+AGG 0.444154 5.1:-53649348 MS.gene43727:CDS
GCGACTCTTGGAACTTATAA+GGG 0.449304 5.1:-53647980 MS.gene43727:CDS
AGGTCACGGATGTGCAGAAA+AGG 0.449986 5.1:-53655229 MS.gene43727:CDS
AGCATCAAAGATTTAATGGC+AGG 0.453800 5.1:-53654369 MS.gene43727:CDS
AGGATCTCAGGCTCAACAAT+TGG 0.457558 5.1:+53648436 None:intergenic
ATGGCTTCTTACCCTTGACT+TGG 0.461709 5.1:+53648128 None:intergenic
TTGTCCGGTGGTTTCGGCTG+TGG 0.462685 5.1:+53654696 None:intergenic
AAGTACCTGCAGCGGTGCTT+TGG 0.463580 5.1:+53649315 None:intergenic
GGACACCAGGGGCGGTGAAA+AGG 0.463623 5.1:+53649381 None:intergenic
CGAAGGGTCATCATGAGTAT+AGG 0.465091 5.1:+53654591 None:intergenic
AGAGTGCTCAGATGGCTCAT+TGG 0.465315 5.1:+53648522 None:intergenic
CCATGAGAATGCCTATGGTT+TGG 0.465357 5.1:-53648497 MS.gene43727:CDS
CTCAAGAAGCTTTGTTGACA+AGG 0.466664 5.1:-53648021 MS.gene43727:CDS
ATAAGCTAATTTCATGACAT+TGG 0.466938 5.1:+53654467 None:intergenic
TGGCGTGCAGTGCTTAAAAT+CGG 0.467744 5.1:-53648547 MS.gene43727:CDS
CTATGTATGGTGTGGATTAG+TGG 0.468647 5.1:-53653893 MS.gene43727:CDS
GCGGTTTAGCTGGTGGTCGA+AGG 0.468822 5.1:+53654574 None:intergenic
TTGGCATATGACAGCATATC+GGG 0.470641 5.1:+53648474 None:intergenic
GAGGACATGGTGGTCATTCA+AGG 0.470656 5.1:+53648342 None:intergenic
TAGTATCACACAATTGTCTT+CGG 0.470817 5.1:-53654781 MS.gene43727:CDS
CTCTACCAAAGCACCGCTGC+AGG 0.473908 5.1:-53649320 MS.gene43727:intron
CTTGGCATATGACAGCATAT+CGG 0.474293 5.1:+53648473 None:intergenic
TCCGGTGGTTTCGGCTGTGG+TGG 0.479716 5.1:+53654699 None:intergenic
CCAGACAAGAAAACAACAGC+TGG 0.481066 5.1:+53648196 None:intergenic
GTGGAGACAACAACTTTGTC+CGG 0.481750 5.1:+53654681 None:intergenic
CTTGCCGGGTGTGCCGATGT+AGG 0.484543 5.1:+53649505 None:intergenic
GTGTGCTCAGCAACAACCTC+GGG 0.487306 5.1:+53648256 None:intergenic
AGAATCATGTTGAATTCTTG+TGG 0.490207 5.1:+53654968 None:intergenic
GGTGGTTTCGGCTGTGGTGG+AGG 0.490650 5.1:+53654702 None:intergenic
AGCTTTGTTGACAAGGGCTA+AGG 0.490730 5.1:-53648014 MS.gene43727:CDS
TAGGCAGTTGTTCAACAAGC+TGG 0.492068 5.1:+53654406 None:intergenic
GTTGATGTCTTGAACAAAGC+TGG 0.494911 5.1:-53648706 MS.gene43727:CDS
TGCAGCGGTGCTTTGGTAGA+GGG 0.495649 5.1:+53649322 None:intergenic
TTGGTACAAGTCCATTCTCT+TGG 0.496399 5.1:+53648455 None:intergenic
CCGTGACCTTCGAACCACCT+TGG 0.498523 5.1:+53655243 None:intergenic
CAATTCTCAATACTTGTACA+TGG 0.502698 5.1:-53653702 MS.gene43727:CDS
AGCTGGGACTGCAGCAGGTA+CGG 0.503571 5.1:+53648213 None:intergenic
GCTGCCTACATCGGCACACC+CGG 0.503985 5.1:-53649509 MS.gene43727:CDS
CTTGCTGCTGATGAGTCAAC+CGG 0.504792 5.1:-53649476 MS.gene43727:CDS
TGTGCCGATGTAGGCAGCAT+TGG 0.506890 5.1:+53649514 None:intergenic
TGTACATGGTATCCTTGTAC+AGG 0.507333 5.1:-53653688 MS.gene43727:CDS
GTTGAGCTTGCCGGAACTGA+TGG 0.507933 5.1:-53648649 MS.gene43727:CDS
GGTCCATCAACAAGGATCTC+AGG 0.508887 5.1:+53648424 None:intergenic
GCTGTCATATGCCAAGAGAA+TGG 0.511282 5.1:-53648466 MS.gene43727:CDS
CAATGTTAGTTGTACTCACA+TGG 0.511945 5.1:-53654832 MS.gene43727:CDS
TGGTGTGCTTCCTGGTATCA+AGG 0.513204 5.1:-53648686 MS.gene43727:CDS
GGGCGGTGAAAAGGAGTTCA+CGG 0.513566 5.1:+53649390 None:intergenic
CCCTTGTCAACCTTGATACC+AGG 0.513576 5.1:+53648676 None:intergenic
TTAGGATTGTCATAGACTGT+TGG 0.515515 5.1:+53654156 None:intergenic
TATTTGACAAAATGTGTGTA+TGG 0.516272 5.1:-53654867 MS.gene43727:CDS
AGATTTAATGGCAGGGAATG+TGG 0.517915 5.1:-53654361 MS.gene43727:CDS
CCCTTCCAAAAGAGAAGGAA+AGG 0.518782 5.1:+53648101 None:intergenic
ACAACAGCTGGGACTGCAGC+AGG 0.520425 5.1:+53648208 None:intergenic
TTTATTGAGCTGGAGCAGAC+AGG 0.520578 5.1:-53653757 MS.gene43727:CDS
TTGTTCAAGACATCAACAAA+AGG 0.521488 5.1:+53648712 None:intergenic
TGTCCTTGCAGCATGCTACA+AGG 0.521812 5.1:-53648365 MS.gene43727:CDS
CCCTGGATCTGATGCACCAA+AGG 0.525088 5.1:-53648284 MS.gene43727:CDS
CTACATCGGCACACCCGGCA+AGG 0.526541 5.1:-53649504 MS.gene43727:CDS
TATAAGGGTAACTCTAAACT+TGG 0.526782 5.1:-53647965 MS.gene43727:CDS
CTAAGGTACTGAAGGACACC+AGG 0.526807 5.1:+53649368 None:intergenic
TGGTGGACAGAGTGAGGAAG+AGG 0.529702 5.1:-53648176 MS.gene43727:CDS
TCTATCCATGAGAATGCCTA+TGG 0.529948 5.1:-53648502 MS.gene43727:CDS
GGAGGTACAAAGAGATATCA+AGG 0.530634 5.1:-53655146 MS.gene43727:CDS
TGACTTGGTTGATGGCATTG+AGG 0.532962 5.1:+53648143 None:intergenic
ATTGCCAATGCTGCCTACAT+CGG 0.536003 5.1:-53649518 MS.gene43727:CDS
GGTAACTCTAAACTTGGTGC+TGG 0.539715 5.1:-53647959 MS.gene43727:CDS
TTTCGGCTGTGGTGGAGGAT+AGG 0.540209 5.1:+53654707 None:intergenic
GTGTGATACTATCAAGAAGA+TGG 0.542322 5.1:+53654793 None:intergenic
AAGCCTAACATGGTTACCCC+TGG 0.543234 5.1:-53648301 MS.gene43727:CDS
TTCACGGAGAGCACGTCTGT+TGG 0.544051 5.1:+53649406 None:intergenic
CACTCTCTTGAAGCCTAACA+TGG 0.547031 5.1:-53648311 MS.gene43727:CDS
CCAAACCATAGGCATTCTCA+TGG 0.550708 5.1:+53648497 None:intergenic
TCCACCACAGCCGAAACCAC+CGG 0.551333 5.1:-53654700 MS.gene43727:CDS
AAAGAGAAGGAAAGGGTCCA+TGG 0.554272 5.1:+53648109 None:intergenic
TGGTGTGGATTAGTGGATAT+GGG 0.554649 5.1:-53653886 MS.gene43727:CDS
GGTTCAGCAAAATTATATTG+TGG 0.556641 5.1:-53654133 MS.gene43727:CDS
AAGTCAAGGGTAAGAAGCCA+TGG 0.558340 5.1:-53648126 MS.gene43727:CDS
TGTGCTAAGTACTATGAAGC+AGG 0.559793 5.1:-53648586 MS.gene43727:CDS
TCCTGGTATCAAGGTTGACA+AGG 0.560548 5.1:-53648677 MS.gene43727:CDS
GCAGCAAGAATACCCTTGCC+GGG 0.561946 5.1:+53649491 None:intergenic
ACTCAGGGTCTTGATGGACT+TGG 0.562479 5.1:-53648616 MS.gene43727:CDS
CCAAGGTGGTTCGAAGGTCA+CGG 0.562682 5.1:-53655243 MS.gene43727:CDS
CTTGTCTGGTGGACAGAGTG+AGG 0.562758 5.1:-53648182 MS.gene43727:CDS
CTCAGAGAGTCTTCATGTGA+AGG 0.562837 5.1:-53647933 MS.gene43727:CDS
CCACCCGGATGCCCTGTACA+AGG 0.564450 5.1:+53653676 None:intergenic
TGATGGAGAAACCACCACTC+AGG 0.570496 5.1:-53648632 MS.gene43727:CDS
AGTGGTCATTTCGAGTGTAG+TGG 0.570782 5.1:-53653830 MS.gene43727:CDS
ATGAGTATAGGTGGTTCAAA+CGG 0.573032 5.1:+53654603 None:intergenic
CGGTTTAGCTGGTGGTCGAA+GGG 0.574514 5.1:+53654575 None:intergenic
GATGGCATTGAGGTTGACAC+TGG 0.575533 5.1:+53648153 None:intergenic
GGTAGAGGGTTTCCTCAAAG+AGG 0.575881 5.1:+53649336 None:intergenic
CTTTACCAATCATGATGATG+AGG 0.578122 5.1:-53654083 MS.gene43727:CDS
TACATCGGCACACCCGGCAA+GGG 0.581098 5.1:-53649503 MS.gene43727:CDS
CAGTTGTCACGTAGAAAATG+AGG 0.581874 5.1:-53654544 MS.gene43727:CDS
TCATGGATAGAGTGCTCAGA+TGG 0.581969 5.1:+53648514 None:intergenic
CCTTTGGTGCATCAGATCCA+GGG 0.582593 5.1:+53648284 None:intergenic
GATGGAGAAACCACCACTCA+GGG 0.584183 5.1:-53648631 MS.gene43727:CDS
CAATGCCATCAACCAAGTCA+AGG 0.584504 5.1:-53648140 MS.gene43727:CDS
GTCAAGGTAACTATAAAGCA+TGG 0.584604 5.1:+53653972 None:intergenic
ATCAGTTCCGGCAAGCTCAA+CGG 0.584893 5.1:+53648651 None:intergenic
GGAGGTAATGCCAAAACAGA+AGG 0.585279 5.1:+53653925 None:intergenic
GGTCACGGATGTGCAGAAAA+GGG 0.585611 5.1:-53655228 MS.gene43727:CDS
GAGTGCCTTCAAGGAGGACA+TGG 0.586352 5.1:+53648329 None:intergenic
TATCCTTGTACAGGGCATCC+GGG 0.586905 5.1:-53653679 MS.gene43727:CDS
GGAATGTGGAAGAACATAAG+TGG 0.587247 5.1:-53654347 MS.gene43727:CDS
CAATATGGCGGTTTAGCTGG+TGG 0.588906 5.1:+53654567 None:intergenic
TGCACCAAAGGTTGCACCCG+AGG 0.589398 5.1:-53648272 MS.gene43727:CDS
CAAAGAGGATGACTCCACTA+AGG 0.590051 5.1:+53649351 None:intergenic
AGGTGGTGTGTGCAATGTCA+TGG 0.591983 5.1:+53654889 None:intergenic
TGACTCCACTAAGGTACTGA+AGG 0.592512 5.1:+53649360 None:intergenic
TATTGGTTCTATGTATGGTG+TGG 0.592967 5.1:-53653901 MS.gene43727:CDS
GCATGCTGCAAGGACACGCT+CGG 0.593245 5.1:+53648372 None:intergenic
TTATTGAGCTGGAGCAGACA+GGG 0.596865 5.1:-53653756 MS.gene43727:CDS
AACAGTCTATGACAATCCTA+AGG 0.597333 5.1:-53654154 MS.gene43727:CDS
GAACAACTCCGAGAATTCGC+CGG 0.599600 5.1:-53655206 MS.gene43727:CDS
AGCATATCGGGCCAAACCAT+AGG 0.599950 5.1:+53648486 None:intergenic
GCATCAAAGATTTAATGGCA+GGG 0.600672 5.1:-53654368 MS.gene43727:CDS
AAGTGCCCTTCCAAAAGAGA+AGG 0.603752 5.1:+53648096 None:intergenic
AACAGAGTACCCTCAAGGCA+TGG 0.603839 5.1:-53648072 MS.gene43727:CDS
GGTGGTTCAAACGGTGACAA+TGG 0.604713 5.1:+53654612 None:intergenic
ATGAAAACAATTTATCAGGA+AGG 0.607596 5.1:+53654937 None:intergenic
CCATTAAATTCCAATGCAGA+AGG 0.609854 5.1:+53655101 None:intergenic
ACTAACCCAAGGTGGTTCGA+AGG 0.609940 5.1:-53655249 MS.gene43727:CDS
AATTTCATGACATTGGATTG+TGG 0.610005 5.1:+53654474 None:intergenic
AATGCCATCAACCAAGTCAA+GGG 0.616498 5.1:-53648139 MS.gene43727:CDS
CCTTCCAAAAGAGAAGGAAA+GGG 0.621042 5.1:+53648102 None:intergenic
TCTCTGCATACCAAAAGTCA+AGG 0.624429 5.1:+53653956 None:intergenic
TCCATCAAGACCCTGAGTGG+TGG 0.624702 5.1:+53648621 None:intergenic
AAATTGATATAAACTGACAC+TGG 0.625652 5.1:+53655002 None:intergenic
AGGCCTTGTAGCATGCTGCA+AGG 0.628730 5.1:+53648362 None:intergenic
TGGAAGTATGATCATTTGGA+TGG 0.630669 5.1:+53654494 None:intergenic
TGTCATGAGGTCCATCAACA+AGG 0.633917 5.1:+53648416 None:intergenic
AGTGTGCTCAGCAACAACCT+CGG 0.636805 5.1:+53648255 None:intergenic
GAGAATTGCCAAAAGTAGAG+TGG 0.637109 5.1:+53653717 None:intergenic
TGCCTTCAAGGAGGACATGG+TGG 0.637134 5.1:+53648332 None:intergenic
TCAAGAAGCTTTGTTGACAA+GGG 0.640371 5.1:-53648020 MS.gene43727:CDS
TGTGATACTATCAAGAAGAT+GGG 0.640679 5.1:+53654794 None:intergenic
AGGGTCATCATGAGTATAGG+TGG 0.640955 5.1:+53654594 None:intergenic
CAGACAAGAAAACAACAGCT+GGG 0.641298 5.1:+53648197 None:intergenic
GAAAACACTGTCGTTGATGG+AGG 0.641799 5.1:-53655164 MS.gene43727:CDS
AAGGGCTAAGGCTAATTCTG+AGG 0.645764 5.1:-53648002 MS.gene43727:CDS
CTTTGGTGCATCAGATCCAG+GGG 0.655083 5.1:+53648285 None:intergenic
TGTTCCATAACTGTTCAACA+AGG 0.655854 5.1:+53655292 None:intergenic
GAGACAACAACTTTGTCCGG+TGG 0.655953 5.1:+53654684 None:intergenic
AAGTCCATCAAGACCCTGAG+TGG 0.657276 5.1:+53648618 None:intergenic
CATTAGTGTTAAGCAACTGG+AGG 0.660410 5.1:-53653797 MS.gene43727:CDS
ACTCTGTACAAGTAGCATTG+TGG 0.662861 5.1:+53654662 None:intergenic
TGGAAAAGAAGAAAATGTGA+AGG 0.663229 5.1:-53648047 MS.gene43727:CDS
ATAACACAGGTGACATGCGG+TGG 0.667087 5.1:+53654735 None:intergenic
ACGTGACAACTGCAATATGG+CGG 0.668692 5.1:+53654555 None:intergenic
TAGGAAGCAAGTACCTGCAG+CGG 0.669563 5.1:+53649307 None:intergenic
GTACATGGTATCCTTGTACA+GGG 0.670723 5.1:-53653687 MS.gene43727:CDS
AATGCTTAGAGAATGTGAAG+TGG 0.670998 5.1:-53653848 MS.gene43727:CDS
GTCACGTAGAAAATGAGGCG+TGG 0.671323 5.1:-53654539 MS.gene43727:CDS
CCTGGTATCAAGGTTGACAA+GGG 0.676179 5.1:-53648676 MS.gene43727:CDS
ACTTCAACAGAGTACCCTCA+AGG 0.678437 5.1:-53648077 MS.gene43727:CDS
ACAATAACACAGGTGACATG+CGG 0.685365 5.1:+53654732 None:intergenic
TAAGGTACTGAAGGACACCA+GGG 0.689754 5.1:+53649369 None:intergenic
CATACATAGAACCAATATGG+AGG 0.690514 5.1:+53653907 None:intergenic
AGGATAGGCAACAATAACAC+AGG 0.702580 5.1:+53654722 None:intergenic
AGGGAGGTAACACTAACCCA+AGG 0.703783 5.1:-53655260 MS.gene43727:CDS
AGTGCTCAGATGGCTCATTG+GGG 0.704686 5.1:+53648524 None:intergenic
CTTCACATGAAGACTCTCTG+AGG 0.707482 5.1:+53647934 None:intergenic
TCAAGAGAGTGCCTTCAAGG+AGG 0.717476 5.1:+53648323 None:intergenic
CCTTGTACAGGGCATCCGGG+TGG 0.719900 5.1:-53653676 MS.gene43727:intron
AAGGTAACTATAAAGCATGG+TGG 0.747504 5.1:+53653975 None:intergenic
GAGGTAACACTAACCCAAGG+TGG 0.748503 5.1:-53655257 MS.gene43727:CDS
AAGGTACTGAAGGACACCAG+GGG 0.750874 5.1:+53649370 None:intergenic
GTACTGAAGGACACCAGGGG+CGG 0.769749 5.1:+53649373 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr5.1 gene 53647919 53655357 53647919 ID=MS.gene43727
chr5.1 mRNA 53647919 53655357 53647919 ID=MS.gene43727.t1;Parent=MS.gene43727
chr5.1 exon 53654346 53655357 53654346 ID=MS.gene43727.t1.exon1;Parent=MS.gene43727.t1
chr5.1 CDS 53654346 53655357 53654346 ID=cds.MS.gene43727.t1;Parent=MS.gene43727.t1
chr5.1 exon 53653677 53654198 53653677 ID=MS.gene43727.t1.exon2;Parent=MS.gene43727.t1
chr5.1 CDS 53653677 53654198 53653677 ID=cds.MS.gene43727.t1;Parent=MS.gene43727.t1
chr5.1 exon 53649321 53649548 53649321 ID=MS.gene43727.t1.exon3;Parent=MS.gene43727.t1
chr5.1 CDS 53649321 53649548 53649321 ID=cds.MS.gene43727.t1;Parent=MS.gene43727.t1
chr5.1 exon 53647919 53648739 53647919 ID=MS.gene43727.t1.exon4;Parent=MS.gene43727.t1
chr5.1 CDS 53647919 53648739 53647919 ID=cds.MS.gene43727.t1;Parent=MS.gene43727.t1
Gene Sequence

>MS.gene43727

ATGAGGACGATTACTGACACTACAGAGTCATTTGCAATTAAATCCTTGTTGAACAGTTATGGAACACAATCAAAAAGGGAGGTAACACTAACCCAAGGTGGTTCGAAGGTCACGGATGTGCAGAAAAGGGAACAACTCCGAGAATTCGCCGGAAATTTTGACGAACCACTAGAAAACACTGTCGTTGATGGAGGTACAAAGAGATATCAAGGTTTGTCTGTAAAATCTGAATTTCCTTCTGCATTGGAATTTAATGGTTTTGGGAAAAGTGGACAAAGAGTAACAGAACCTATGATAAAATTAGATGAATTTTTGATTGAAAGTAAGGTGCTGCCAGTGTCAGTTTATATCAATTTTGATGTGGATTCCACAAGAATTCAACATGATTCTAGATTTGTCCTTCCTGATAAATTGTTTTCATGTGGTGATATGGCAATTTTGGGATTCCATGACATTGCACACACCACCTATTTGACAAAATGTGTGTATGGAATGCTCAATTACAATGTTAGTTGTACTCACATGGATAATCATTTAAACACCCATCTTCTTGATAGTATCACACAATTGTCTTCGGTTTTTAATCGACAACTACCTAAACCACCGCATGTCACCTGTGTTATTGTTGCCTATCCTCCACCACAGCCGAAACCACCGGACAAAGTTGTTGTCTCCACAATGCTACTTGTACAGAGTCTGAAACTATCTGAGCGAGTAGTTGTTCCATTGTCACCGTTTGAACCACCTATACTCATGATGACCCTTCGACCACCAGCTAAACCGCCATATTGCAGTTGTCACGTAGAAAATGAGGCGTGGATAGTATACTTGATTCTGATCGCCATCCAAATGATCATACTTCCACAATCCAATGTCATGAAATTAGCTTATATGTGTTTACCAGTTAAGACAAAGATTATTACTCAACACCAGCTTGTTGAACAACTGCCTAAACTGATTTGCACAAGCATCAAAGATTTAATGGCAGGGAATGTGGAAGAACATAAGTGGAGTATGGCTTTGCACTTGTTAAAGACATACAAGCCTTTGATGGAAGGGGGATTGTTCCTTGTTAAGCAGACGATTCTTGAGACATTTGCAAACACATGGCATTTTTTTCATCATTAATTCACTTCACTTTGGGATGATCATGAAGCAGTTGTTTTTGAGGCAAATCTTCCAACAGTCTATGACAATCCTAAGGTTCAGCAAAATTATATTGTGGATTTTTTTCATGGTAGTCTTGGCATTGCTTTACCAATCATGATGATGAGGATAAATGGTGTAACATACGTTGAGAAGTTTTATATCATTTTTGGTGATGGGGAGCAATTATATATATTCCTGGAAGTTTATGCTGCCACCATGCTTTATAGTTACCTTGACTTTTGGTATGCAGAGATTTTTATGCCTTCTGTTTTGGCATTACCTCCATATTGGTTCTATGTATGGTGTGGATTAGTGGATATGGGACACAAACTTGTTACAATGCTTAGAGAATGTGAAGTGGTCATTTCGAGTGTAGTGGTTTTGGAATGCATTAGTGTTAAGCAACTGGAGGAATCAATTGCCAAGAATTTTATTGAGCTGGAGCAGACAGGGTTAGCAACCAAATTAGCCACTCTACTTTTGGCAATTCTCAATACTTGTACATGGTATCCTTGTACAGGGCATCCGGGTGGTAATGGCTTTTTTTTCTATACCGAAGGGTCTTTACAATTTCATCAATGGGATCCGGGTGGATGTTCTCTTGTTCATGGGAAGGTCCATCTGACTTGGAAGCAAAGGAAAGACATTACTATCACTCAACAAACATTGTGGAAAGTTCAACCTTGAGGACAAGGTTGATTTTTAATGGGGATGGTAATGTAATGAGTCAAATAGTTGAAAGGGGCAATATGGAAAATGTGAATGTGGACTCTTATAAATAAGAGAAGGTCAAAGGGAAAAACGAATGGAAATTGTGATGTCAAAATCTTCTTTTCTATCTGAACTCTCTTCTCTCTGATTCTTCCTTTTTTATTGTAATCATTCAAGTAGCTTTGAAACTTATTTTACTTCATCAATTCAATAAAACAGTTTAAAGATTCTACTTAGTTTTAAGGTACATTACAATTTTCTACGAGATTTTTTCATTCATTTATTGGCCTTACTCTTGTATTATCGAGCATCATAAGATCACACGAACATGTGCTAGAATAAATAAGAGTTGTGTTATTTGAACATCTATTTATCTGACAACTTTGGAGACAACTAAAATTTTATAAAGAAAATGAGGCATTGACACAAAAATCAAAACAATAGAAAAAGAAAGTAAAATTATAATGTGACTATGAGAGAAAAAATTATCACAAAAATTATCAAAAAATAGTTGTTCAAATATAATTTCTCAATAAATAAATCCCCTAAATGAATTTTCTTAGTTTGAGTGATTATTCTCAAACTGTCAAGATGAGACACCTTGAACAACAACAACAAAAGAAAATCGATAGTGTTACAAATACTCCCTCCCTCCCTTCGTCCCTCAATAGATGACCTAGTTGACTCTGACGCACGTACCAATGCATATGTTTTATCTTTGATATCTTCGATTCTCTACTAAAAAAAATTATGAAAATTTAATATTTTAAAAATATTCATCGAGACGAATCCAACAACATCTTACATGATATTATTTATCTTTGTGAATTAGTAGAAAAATATGGTCAAAATATGTCAAGTCAATAATGTATATTGTCAACTAAAGGGACGGAGGGAGTATTTGTTAGTGCTTGCAATATAATATTTTTAACGGGCAAAGATTTTTTTTTTATAGTTCAACGCATAGGCTACTACGACTATAGAATAAACACACACGCAGTGGCGGAGCCACGTTATGCCCAGGGGATGCACATGAACCCCCTCACTTTTCCAAATTACACCTATTTTTAATGTTATTTTAATACTTGAACACCCTCAATTTTATTGCTTGAACCCTCTCCGCAGAGAAAGCTGCTTGTTGCACCTCTGTATTGGACATTTGGACAGTTAAAGTCTCACATAGATAGTGTAGTCTATAGTACAATATCAGCTATAGGTTTGCAGACTACAAAGTCAAAACACACTAATACTTTATAATCTAGTAATTGGAATTAATATATTTACTCAACTTGATCAATTCAACAACGATATATATTGAATAAATATATTTACTAGCTTTATTATATGTCAATTTTTGTTAGGAAAAGCAGCTTCATCTATCATTAATCAGTTAAATGTTGGGATTTTTTTGTTTTTGTTTTTGAGAAAGTTAAATGTTGGGAATTAAAATTAAAACATGTTGCTTTTTTTTAAGGAAAACCATGTTGGATTTGTTTGTCGGTTACAAGTTATCTAAAAACAGTTCATTCCACTATTGTCTTATATATCTTAGTTAAAGAACATTTTAGTTTACTTATTATGTGTTCATAAAAAAATTATATATCTTAGTTGATGCAAAATAATGGCAATTTTCAGGTCCAAAAATATCCAATTAATATTCTATATTAAAAAAAAAATCCACTTAACATAACGGGTAACATTAAAATCAAAGGTCTCGTCTTTAATTTCATGTCAATCAATAACTGTCTTCGGACTTATATTGAGAGATATGTGTTCGATAACACAGATTATTATTCAATTATTTTATAAACATTAAATCACGTAAAGAACAATTATAAAATATGTATGTAATTTTGTACCCAAAAAAATGTATGTAATTTAAGTACAATACTATAATTTTTAATATATATAATTTTATATATATTATTATAAAAAAATTAAAATTTAAAAGTTTGAACCCCCTGCCTCAAGGTCCTGGCAACGCCACTGCACACACGTACCTCTTGCACGCTTGAAAAATAATGTCATTTAGCAACATCATCAATATGGTTTATGGTGAACACTAAAGTGTCCATAGTTGTGGGGGACGACACTCCTCCTAGCTACTTATTGAATTGTAAGGTTAAACTTTAGTGTATACGTTGAGGGCTCCAAAGGAGACAAGAGTTACGGTTTGAGTTCTTGGTAGAGCACTAAGCATTATCCATGCCTTCGTGTCTTCTACGTTTTATCAAATGCTCCCTCCATTTATCTTGCTTTTTCAAAAGAGACAAAGGAATAGATACATAAAATAAATTTTGACAAGATATATTCTTAGAAATCATAGTTGGGTCTAACACAAACCCACAAAACCGGTTTGTGAGGTGAGGATTGTCACCACTTATAAATACATTGTCAGGCATCACCTATCCGATGTGGGACTCTTAACATTTATGTTGTAAAACACCAAAAATGTAATTATATCTGATAAAAAAAACCAATATAATATAATTATATTAACATAGAGTTCATGTTTTCTCTCTTATTTCTCTCTTACATGGTAATGCCAATAGTTTCATTAGATGTATTTTATACAATGTCCATATTCGTACAATGTAAATTTATAATGTTCAGATTATATCGTAGAATCGATTGCCGATATAGATTGTATGACATTTCGCTCACACCTCTTGTAACTTAAGTTTAAGTTTTTTTTTTTTACACAAACTGAAGTTTAAGTTTTTTTTTTTTACACAAACTTAAGTTTAACTTAAAACCATACCCTTAATTTTCTAAGGGTTAATAGTGTTTTTCACCCCTGTAATATATGCCATTTCCGGTTTTCGCCCCTATAAAATTTTTGGTTTGATTTGCACCCTCGTAAAATTTTTTTTCTTCCGGAAAACACCCTTTTTAGGTCATTCAAAAAACTTTTTTTCAAGAATTTTTGGTTTTTGAATAACCTAAAAAGGGTGTTTTCCGGAAATTTTTTTTTTTTACGAGGGTGCAAATCAAACCAAAAATTTTACGAGGGCGAAAACCGGAAATAACATATATTACAGGGGTGAAAAATACTATTAACCCATTTTCTAATAAACATAGATGAAAAACATGATTCAACGTAGAGAAAGAAACAAGTTTGATTGAAAGTGGACCATAATGGGCTTCAGTTTGAGTAACCCATGTGCCCAACAAAAGCGGGTTTTTCAACCTAAAAACCGCCTTAGTAGATCCAACGGCAGTCCATAGAGACAGATAACCAACCACCAAACCAAGGTCGATACATCCAATCGTTGTACGCCTCCTTTGTTGTCTTGTTTCCCAATCCATCATAATCACTATATATAAACCCAAAACCTCACTTTATTTCTCACTCTCTCTCTCACTACCTTATTCATTCTTAACCTACCCTCTTTTTCATTCTCTTCCAAAACAAACCTACCTCGATCATGTCGAACTTCAAGAGCAAGTACCATGGTATAATTCTATTCTCTTCTATACTTTCTATGTTTTTTGTCTTGCTTAGATCTATTGTTATCACCTTCGGATCTTGCTCAATTTTTTGTTTGTTTTCTTTATTCTTTGTTCTGTTTTATTTGTATGGATCGGTAATTGTTGGTTTTAGTTTAGAGTTTGTTAATTTCAGATCTAACTTTTTTATGATTTTAATTTATTTATTGAAAATTAGTTCTTAATTATTCATTACATCAGATCCTTAAAGGGTTTTGATATAAATCACAGTTTTAATATTTATGAAATTGTAAATCAGGGAAAATAAAATCAAGTAGATCTGTTTAAGGTATAAGTTATTTACTTTATAAATATGAGATCACTGTTGATGATCTATGTTGTTCATAATTTGATTTTGCTTATGTCTAATCATGATTAATTTTGGGTATTTATTTGTTAATTAGATTGTTGCAGTAAGGTTTATAGTTGTGTTGGTACTGATTTTTGTGAGAATTTGCAGATGAGCTTATTGCCAATGCTGCCTACATCGGCACACCCGGCAAGGGTATTCTTGCTGCTGATGAGTCAACCGGAACAATTGGAAAGCGTCTAGCTAGCATCAGCGTTGAGAATGTTGAATCCAACAGACGTGCTCTCCGTGAACTCCTTTTCACCGCCCCTGGTGTCCTTCAGTACCTTAGTGGAGTCATCCTCTTTGAGGAAACCCTCTACCAAAGCACCGCTGCAGGTACTTGCTTCCTAGTTCCTACAATCTGAACAATATTTACTGAACTTATTTTTTATCTGATACGTTTGCTCCTTGAATTGTTCATCAATACATCTTTTGTTATCATGTTAGTGTCTTTGTAAATAGATTGTTATCATGTCTATTGCTTTGTATTGTAAAAGTTTGGATCGTGGTATATCATCAGTTACTTTCAACATGCTTTTTTATATGTCAATGACTCTGAACATGAATACTTATCATATCTATTGCTTTGTGAAGTTTGGTATATGATTGATCACGTGTTGCCTTTAACACGTTTTCTTTTATGTCAATTGCTTTGAAGAGTCTTTATTATGATAAGAAATAGTGATCCATCATGTTAGGAAGCAATAGACATAATACATAACAAGTTGTTCGCATGCTTGCATTTCTCCCCCCGTTTTTGGGATGCAAAAAATGTTTATATCTATGTTTGAATGAGTTGTGTATGTGTTTTTCCTGCTTATGAAGCTGTTCTTGATTGCTTCTTTTTGTGGTGTGTGAATTATGATTGATGACATTGTTGTTGTTCTTGTACACTTACATGAATGTATTTTTTTTAGGCAAGCCTTTTGTTGATGTCTTGAACAAAGCTGGTGTGCTTCCTGGTATCAAGGTTGACAAGGGTACCGTTGAGCTTGCCGGAACTGATGGAGAAACCACCACTCAGGGTCTTGATGGACTTGGTGCTCGTTGTGCTAAGTACTATGAAGCAGGTGCACGTTTCGCTAAATGGCGTGCAGTGCTTAAAATCGGCCCCAATGAGCCATCTGAGCACTCTATCCATGAGAATGCCTATGGTTTGGCCCGATATGCTGTCATATGCCAAGAGAATGGACTTGTACCAATTGTTGAGCCTGAGATCCTTGTTGATGGACCTCATGACATTCAAAAGTGTGCTGCTGTTACCGAGCGTGTCCTTGCAGCATGCTACAAGGCCTTGAATGACCACCATGTCCTCCTTGAAGGCACTCTCTTGAAGCCTAACATGGTTACCCCTGGATCTGATGCACCAAAGGTTGCACCCGAGGTTGTTGCTGAGCACACTGTTAGAGCTTTGCAGAGAACCGTACCTGCTGCAGTCCCAGCTGTTGTTTTCTTGTCTGGTGGACAGAGTGAGGAAGAGGCCAGTGTCAACCTCAATGCCATCAACCAAGTCAAGGGTAAGAAGCCATGGACCCTTTCCTTCTCTTTTGGAAGGGCACTTCAACAGAGTACCCTCAAGGCATGGTCTGGAAAAGAAGAAAATGTGAAGGCTGCTCAAGAAGCTTTGTTGACAAGGGCTAAGGCTAATTCTGAGGCGACTCTTGGAACTTATAAGGGTAACTCTAAACTTGGTGCTGGTGCCTCAGAGAGTCTTCATGTGAAGGACTACAAGTATTGA

Protein sequence

>MS.gene43727.t1

MRTITDTTESFAIKSLLNSYGTQSKREVTLTQGGSKVTDVQKREQLREFAGNFDEPLENTVVDGGTKRYQGLSVKSEFPSALEFNGFGKSGQRVTEPMIKLDEFLIESKVLPVSVYINFDVDSTRIQHDSRFVLPDKLFSCGDMAILGFHDIAHTTYLTKCVYGMLNYNVSCTHMDNHLNTHLLDSITQLSSVFNRQLPKPPHVTCVIVAYPPPQPKPPDKVVVSTMLLVQSLKLSERVVVPLSPFEPPILMMTLRPPAKPPYCSCHVENEAWIVYLILIAIQMIILPQSNVMKLAYMCLPVKTKIITQHQLVEQLPKLICTSIKDLMAGNVEEHKWIVFEANLPTVYDNPKVQQNYIVDFFHGSLGIALPIMMMRINGVTYVEKFYIIFGDGEQLYIFLEVYAATMLYSYLDFWYAEIFMPSVLALPPYWFYVWCGLVDMGHKLVTMLRECEVVISSVVVLECISVKQLEESIAKNFIELEQTGLATKLATLLLAILNTCTWYPCTGHPGDELIANAAYIGTPGKGILAADESTGTIGKRLASISVENVESNRRALRELLFTAPGVLQYLSGVILFEETLYQSTAAGKPFVDVLNKAGVLPGIKVDKGTVELAGTDGETTTQGLDGLGARCAKYYEAGARFAKWRAVLKIGPNEPSEHSIHENAYGLARYAVICQENGLVPIVEPEILVDGPHDIQKCAAVTERVLAACYKALNDHHVLLEGTLLKPNMVTPGSDAPKVAPEVVAEHTVRALQRTVPAAVPAVVFLSGGQSEEEASVNLNAINQVKGKKPWTLSFSFGRALQQSTLKAWSGKEENVKAAQEALLTRAKANSEATLGTYKGNSKLGAGASESLHVKDYKY