Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44052.t1 | RHN80717.1 | 93 | 512 | 36 | 0 | 1 | 512 | 1 | 512 | 5.50E-272 | 946.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44052.t1 | O13633 | 28.8 | 208 | 98 | 4 | 1 | 159 | 1 | 207 | 2.5e-10 | 68.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44052.t1 | A0A396K2H3 | 93.0 | 512 | 36 | 0 | 1 | 512 | 1 | 512 | 4.0e-272 | 946.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049397 | MS.gene44052 | 0.83741 | 5.28E-57 | -1.69E-46 |
| MS.gene04985 | MS.gene44052 | 0.803772 | 2.97E-49 | -1.69E-46 |
| MS.gene049989 | MS.gene44052 | 0.867908 | 9.67E-66 | -1.69E-46 |
| MS.gene050297 | MS.gene44052 | 0.837893 | 3.97E-57 | -1.69E-46 |
| MS.gene050648 | MS.gene44052 | 0.803484 | 3.41E-49 | -1.69E-46 |
| MS.gene05124 | MS.gene44052 | 0.807601 | 4.67E-50 | -1.69E-46 |
| MS.gene051629 | MS.gene44052 | 0.818454 | 1.94E-52 | -1.69E-46 |
| MS.gene051816 | MS.gene44052 | 0.808156 | 3.56E-50 | -1.69E-46 |
| MS.gene052308 | MS.gene44052 | 0.808363 | 3.21E-50 | -1.69E-46 |
| MS.gene052367 | MS.gene44052 | 0.872584 | 2.84E-67 | -1.69E-46 |
| MS.gene053173 | MS.gene44052 | 0.834224 | 3.39E-56 | -1.69E-46 |
| MS.gene053348 | MS.gene44052 | 0.802905 | 4.49E-49 | -1.69E-46 |
| MS.gene053416 | MS.gene44052 | 0.850547 | 1.58E-60 | -1.69E-46 |
| MS.gene053417 | MS.gene44052 | 0.849402 | 3.31E-60 | -1.69E-46 |
| MS.gene05369 | MS.gene44052 | 0.807808 | 4.22E-50 | -1.69E-46 |
| MS.gene054551 | MS.gene44052 | 0.835783 | 1.37E-56 | -1.69E-46 |
| MS.gene054552 | MS.gene44052 | 0.816969 | 4.20E-52 | -1.69E-46 |
| MS.gene054593 | MS.gene44052 | 0.840437 | 8.70E-58 | -1.69E-46 |
| MS.gene055308 | MS.gene44052 | 0.846356 | 2.29E-59 | -1.69E-46 |
| MS.gene055578 | MS.gene44052 | 0.831671 | 1.46E-55 | -1.69E-46 |
| MS.gene055957 | MS.gene44052 | 0.857948 | 1.15E-62 | -1.69E-46 |
| MS.gene056041 | MS.gene44052 | 0.86603 | 3.84E-65 | -1.69E-46 |
| MS.gene056042 | MS.gene44052 | 0.805365 | 1.38E-49 | -1.69E-46 |
| MS.gene05640 | MS.gene44052 | 0.83149 | 1.62E-55 | -1.69E-46 |
| MS.gene056526 | MS.gene44052 | 0.814892 | 1.22E-51 | -1.69E-46 |
| MS.gene057458 | MS.gene44052 | 0.844816 | 5.98E-59 | -1.69E-46 |
| MS.gene058196 | MS.gene44052 | 0.800759 | 1.24E-48 | -1.69E-46 |
| MS.gene058818 | MS.gene44052 | 0.816869 | 4.43E-52 | -1.69E-46 |
| MS.gene058853 | MS.gene44052 | 0.804909 | 1.72E-49 | -1.69E-46 |
| MS.gene059300 | MS.gene44052 | 0.830322 | 3.14E-55 | -1.69E-46 |
| MS.gene059553 | MS.gene44052 | 0.820057 | 8.38E-53 | -1.69E-46 |
| MS.gene060473 | MS.gene44052 | 0.852731 | 3.81E-61 | -1.69E-46 |
| MS.gene060565 | MS.gene44052 | 0.851918 | 6.49E-61 | -1.69E-46 |
| MS.gene06057 | MS.gene44052 | 0.825278 | 5.11E-54 | -1.69E-46 |
| MS.gene06093 | MS.gene44052 | 0.851561 | 8.19E-61 | -1.69E-46 |
| MS.gene061099 | MS.gene44052 | 0.806914 | 6.53E-50 | -1.69E-46 |
| MS.gene061260 | MS.gene44052 | 0.878576 | 2.51E-69 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44052.t1 | MTR_1g081970 | 94.307 | 527 | 23 | 1 | 1 | 527 | 1 | 520 | 0.0 | 1025 |
| MS.gene44052.t1 | MTR_1g060440 | 68.480 | 533 | 122 | 6 | 1 | 511 | 1 | 509 | 0.0 | 702 |
| MS.gene44052.t1 | MTR_7g114150 | 43.494 | 561 | 251 | 9 | 1 | 510 | 1 | 546 | 2.91e-132 | 411 |
| MS.gene44052.t1 | MTR_1g081960 | 65.625 | 256 | 72 | 4 | 1 | 252 | 51 | 294 | 1.30e-103 | 313 |
| MS.gene44052.t1 | MTR_2g020420 | 37.567 | 559 | 277 | 19 | 1 | 511 | 1 | 535 | 5.21e-89 | 293 |
| MS.gene44052.t1 | MTR_4g118660 | 35.000 | 560 | 274 | 12 | 1 | 510 | 42 | 561 | 2.29e-88 | 292 |
| MS.gene44052.t1 | MTR_4g118660 | 33.628 | 113 | 70 | 3 | 416 | 526 | 764 | 873 | 1.23e-11 | 67.8 |
| MS.gene44052.t1 | MTR_1g051765 | 55.691 | 246 | 57 | 2 | 267 | 512 | 40 | 233 | 1.19e-84 | 267 |
| MS.gene44052.t1 | MTR_8g011080 | 32.375 | 522 | 251 | 14 | 1 | 510 | 54 | 485 | 3.34e-62 | 217 |
| MS.gene44052.t1 | MTR_6g059870 | 29.517 | 559 | 325 | 18 | 1 | 506 | 1 | 543 | 1.83e-57 | 204 |
| MS.gene44052.t1 | MTR_2g020420 | 44.681 | 235 | 118 | 4 | 1 | 224 | 1 | 234 | 6.56e-55 | 199 |
| MS.gene44052.t1 | MTR_3g091040 | 42.609 | 230 | 121 | 6 | 1 | 222 | 1 | 227 | 9.41e-49 | 180 |
| MS.gene44052.t1 | MTR_3g091040 | 35.433 | 127 | 76 | 3 | 378 | 501 | 423 | 546 | 9.73e-18 | 87.0 |
| MS.gene44052.t1 | MTR_3g099170 | 25.159 | 628 | 337 | 18 | 1 | 503 | 15 | 634 | 2.94e-38 | 150 |
| MS.gene44052.t1 | MTR_5g097170 | 36.239 | 218 | 110 | 6 | 1 | 218 | 1 | 189 | 2.16e-30 | 125 |
| MS.gene44052.t1 | MTR_5g097170 | 39.785 | 93 | 53 | 2 | 416 | 505 | 450 | 542 | 2.90e-17 | 85.5 |
| MS.gene44052.t1 | MTR_1g082220 | 84.848 | 66 | 10 | 0 | 1 | 66 | 1 | 66 | 6.72e-30 | 116 |
| MS.gene44052.t1 | MTR_1g082220 | 69.492 | 59 | 18 | 0 | 257 | 315 | 90 | 148 | 9.73e-20 | 87.8 |
| MS.gene44052.t1 | MTR_3g082810 | 32.895 | 228 | 120 | 5 | 1 | 226 | 1 | 197 | 2.85e-28 | 119 |
| MS.gene44052.t1 | MTR_3g082810 | 36.220 | 127 | 74 | 4 | 386 | 505 | 407 | 533 | 3.26e-19 | 91.7 |
| MS.gene44052.t1 | MTR_1g051815 | 69.014 | 71 | 21 | 1 | 317 | 387 | 23 | 92 | 3.06e-21 | 88.6 |
| MS.gene44052.t1 | MTR_3g100330 | 29.520 | 271 | 134 | 9 | 1 | 260 | 1 | 225 | 2.19e-20 | 90.5 |
| MS.gene44052.t1 | MTR_5g066100 | 29.032 | 217 | 147 | 4 | 1 | 214 | 2 | 214 | 1.17e-18 | 87.8 |
| MS.gene44052.t1 | MTR_2g436560 | 32.530 | 166 | 73 | 2 | 1 | 128 | 1 | 165 | 3.75e-14 | 74.3 |
| MS.gene44052.t1 | MTR_2g435450 | 42.222 | 90 | 46 | 2 | 47 | 130 | 13 | 102 | 3.19e-13 | 70.5 |
| MS.gene44052.t1 | MTR_4g120450 | 49.231 | 65 | 33 | 0 | 66 | 130 | 36 | 100 | 3.15e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44052.t1 | AT5G18750 | 35.687 | 524 | 273 | 15 | 4 | 506 | 3 | 483 | 1.34e-68 | 237 |
| MS.gene44052.t1 | AT5G18750 | 32.292 | 96 | 63 | 1 | 416 | 509 | 652 | 747 | 4.21e-12 | 69.3 |
| MS.gene44052.t1 | AT3G04980 | 31.341 | 619 | 294 | 18 | 1 | 521 | 1 | 586 | 3.56e-66 | 233 |
| MS.gene44052.t1 | AT3G04980 | 31.341 | 619 | 294 | 18 | 1 | 521 | 1 | 586 | 3.56e-66 | 233 |
| MS.gene44052.t1 | AT5G27240 | 31.366 | 593 | 286 | 21 | 1 | 510 | 1 | 555 | 7.83e-63 | 223 |
| MS.gene44052.t1 | AT5G27240 | 31.366 | 593 | 286 | 21 | 1 | 510 | 1 | 555 | 7.83e-63 | 223 |
| MS.gene44052.t1 | AT5G27240 | 31.366 | 593 | 286 | 21 | 1 | 510 | 1 | 555 | 7.83e-63 | 223 |
| MS.gene44052.t1 | AT3G04980 | 30.449 | 601 | 287 | 18 | 19 | 521 | 1 | 568 | 1.31e-57 | 207 |
| MS.gene44052.t1 | AT3G06340 | 40.984 | 244 | 117 | 4 | 1 | 226 | 1 | 235 | 1.38e-48 | 178 |
| MS.gene44052.t1 | AT3G06340 | 40.984 | 244 | 117 | 4 | 1 | 226 | 1 | 235 | 1.38e-48 | 178 |
| MS.gene44052.t1 | AT3G06340 | 40.984 | 244 | 117 | 4 | 1 | 226 | 1 | 235 | 1.38e-48 | 178 |
| MS.gene44052.t1 | AT3G06340 | 40.984 | 244 | 117 | 4 | 1 | 226 | 1 | 235 | 1.38e-48 | 178 |
| MS.gene44052.t1 | AT5G53150 | 36.290 | 248 | 130 | 5 | 1 | 224 | 1 | 244 | 8.39e-44 | 163 |
| MS.gene44052.t1 | AT5G53150 | 36.290 | 248 | 130 | 5 | 1 | 224 | 1 | 244 | 5.49e-43 | 163 |
| MS.gene44052.t1 | AT5G53150 | 42.857 | 91 | 49 | 2 | 421 | 508 | 448 | 538 | 2.56e-17 | 85.9 |
| MS.gene44052.t1 | AT5G53150 | 36.290 | 248 | 130 | 5 | 1 | 224 | 1 | 244 | 5.49e-43 | 163 |
| MS.gene44052.t1 | AT5G53150 | 42.857 | 91 | 49 | 2 | 421 | 508 | 448 | 538 | 2.56e-17 | 85.9 |
| MS.gene44052.t1 | AT5G53150 | 36.290 | 248 | 130 | 5 | 1 | 224 | 1 | 244 | 6.85e-43 | 163 |
| MS.gene44052.t1 | AT5G53150 | 42.857 | 91 | 49 | 2 | 421 | 508 | 477 | 567 | 2.23e-17 | 86.3 |
| MS.gene44052.t1 | AT5G53150 | 36.290 | 248 | 130 | 5 | 1 | 224 | 1 | 244 | 6.85e-43 | 163 |
| MS.gene44052.t1 | AT5G53150 | 42.857 | 91 | 49 | 2 | 421 | 508 | 477 | 567 | 2.23e-17 | 86.3 |
| MS.gene44052.t1 | AT5G53150 | 36.290 | 248 | 130 | 5 | 1 | 224 | 1 | 244 | 6.85e-43 | 163 |
| MS.gene44052.t1 | AT5G53150 | 42.857 | 91 | 49 | 2 | 421 | 508 | 477 | 567 | 2.23e-17 | 86.3 |
| MS.gene44052.t1 | AT2G25560 | 35.593 | 236 | 135 | 3 | 1 | 222 | 1 | 233 | 4.70e-41 | 157 |
| MS.gene44052.t1 | AT2G25560 | 36.364 | 88 | 49 | 3 | 420 | 502 | 423 | 508 | 1.29e-11 | 67.8 |
| MS.gene44052.t1 | AT5G37380 | 33.094 | 278 | 127 | 4 | 1 | 220 | 1 | 277 | 1.42e-38 | 146 |
| MS.gene44052.t1 | AT5G37380 | 33.094 | 278 | 127 | 4 | 1 | 220 | 1 | 277 | 1.42e-38 | 146 |
| MS.gene44052.t1 | AT5G37380 | 33.094 | 278 | 127 | 4 | 1 | 220 | 1 | 277 | 1.42e-38 | 146 |
| MS.gene44052.t1 | AT5G37380 | 33.094 | 278 | 127 | 4 | 1 | 220 | 1 | 277 | 1.42e-38 | 146 |
| MS.gene44052.t1 | AT5G37380 | 33.094 | 278 | 127 | 4 | 1 | 220 | 1 | 277 | 1.42e-38 | 146 |
| MS.gene44052.t1 | AT5G37380 | 33.094 | 278 | 127 | 4 | 1 | 220 | 1 | 277 | 1.42e-38 | 146 |
| MS.gene44052.t1 | AT5G37380 | 33.094 | 278 | 127 | 4 | 1 | 220 | 1 | 277 | 1.42e-38 | 146 |
| MS.gene44052.t1 | AT5G37380 | 33.094 | 278 | 127 | 4 | 1 | 220 | 1 | 277 | 1.42e-38 | 146 |
| MS.gene44052.t1 | AT5G37380 | 33.094 | 278 | 127 | 4 | 1 | 220 | 1 | 277 | 1.42e-38 | 146 |
| MS.gene44052.t1 | AT2G05230 | 32.540 | 252 | 157 | 5 | 1 | 251 | 1 | 240 | 1.09e-34 | 139 |
| MS.gene44052.t1 | AT2G05230 | 39.773 | 88 | 50 | 2 | 421 | 505 | 473 | 560 | 8.49e-15 | 77.8 |
| MS.gene44052.t1 | AT2G05250 | 32.540 | 252 | 157 | 5 | 1 | 251 | 1 | 240 | 1.09e-34 | 139 |
| MS.gene44052.t1 | AT2G05250 | 39.773 | 88 | 50 | 2 | 421 | 505 | 473 | 560 | 8.49e-15 | 77.8 |
| MS.gene44052.t1 | AT4G19570 | 34.118 | 255 | 127 | 6 | 1 | 220 | 1 | 249 | 2.86e-33 | 133 |
| MS.gene44052.t1 | AT4G19590 | 46.212 | 132 | 71 | 0 | 1 | 132 | 1 | 132 | 1.53e-31 | 125 |
| MS.gene44052.t1 | AT5G37750 | 37.799 | 209 | 92 | 6 | 10 | 217 | 22 | 193 | 1.75e-31 | 122 |
| MS.gene44052.t1 | AT4G19590 | 46.212 | 132 | 71 | 0 | 1 | 132 | 1 | 132 | 1.89e-31 | 125 |
| MS.gene44052.t1 | AT4G19580 | 34.322 | 236 | 111 | 8 | 1 | 193 | 1 | 235 | 9.59e-29 | 116 |
| MS.gene44052.t1 | AT5G37440 | 36.239 | 218 | 102 | 6 | 1 | 217 | 16 | 197 | 1.91e-28 | 115 |
| MS.gene44052.t1 | AT4G19590 | 45.378 | 119 | 65 | 0 | 14 | 132 | 3 | 121 | 1.04e-25 | 108 |
| MS.gene44052.t1 | AT2G35540 | 31.100 | 209 | 111 | 3 | 7 | 215 | 12 | 187 | 1.64e-22 | 101 |
| MS.gene44052.t1 | AT5G18740 | 47.059 | 85 | 44 | 1 | 428 | 511 | 174 | 258 | 5.08e-19 | 90.1 |
| MS.gene44052.t1 | AT5G18730 | 45.055 | 91 | 48 | 2 | 423 | 511 | 39 | 129 | 4.46e-18 | 87.8 |
| MS.gene44052.t1 | AT2G01710 | 28.384 | 229 | 130 | 6 | 4 | 226 | 7 | 207 | 1.03e-16 | 81.6 |
| MS.gene44052.t1 | AT2G01710 | 28.384 | 229 | 130 | 6 | 4 | 226 | 51 | 251 | 2.70e-16 | 80.9 |
| MS.gene44052.t1 | AT5G64360 | 28.962 | 183 | 112 | 6 | 47 | 220 | 58 | 231 | 3.98e-16 | 81.3 |
| MS.gene44052.t1 | AT5G64360 | 28.962 | 183 | 112 | 6 | 47 | 220 | 58 | 231 | 3.98e-16 | 81.3 |
| MS.gene44052.t1 | AT5G64360 | 28.962 | 183 | 112 | 6 | 47 | 220 | 58 | 231 | 3.98e-16 | 81.3 |
| MS.gene44052.t1 | AT5G64360 | 28.962 | 183 | 112 | 6 | 47 | 220 | 58 | 231 | 3.98e-16 | 81.3 |
| MS.gene44052.t1 | AT5G64360 | 28.962 | 183 | 112 | 6 | 47 | 220 | 58 | 231 | 3.98e-16 | 81.3 |
| MS.gene44052.t1 | AT5G64360 | 28.962 | 183 | 112 | 6 | 47 | 220 | 58 | 231 | 3.98e-16 | 81.3 |
| MS.gene44052.t1 | AT5G64360 | 28.962 | 183 | 112 | 6 | 47 | 220 | 58 | 231 | 4.08e-16 | 80.9 |
| MS.gene44052.t1 | AT5G35753 | 39.773 | 88 | 50 | 2 | 421 | 505 | 196 | 283 | 4.64e-16 | 80.9 |
| MS.gene44052.t1 | AT5G09540 | 25.909 | 220 | 138 | 4 | 2 | 218 | 8 | 205 | 1.39e-13 | 71.6 |
| MS.gene44052.t1 | AT3G04960 | 40.449 | 89 | 40 | 4 | 423 | 509 | 325 | 402 | 2.52e-13 | 72.8 |
| MS.gene44052.t1 | AT3G04960 | 40.449 | 89 | 40 | 4 | 423 | 509 | 276 | 353 | 3.01e-13 | 72.4 |
| MS.gene44052.t1 | AT3G04960 | 40.449 | 89 | 40 | 4 | 423 | 509 | 377 | 454 | 3.93e-13 | 72.4 |
| MS.gene44052.t1 | AT3G04960 | 40.449 | 89 | 40 | 4 | 423 | 509 | 328 | 405 | 5.25e-13 | 72.0 |
| MS.gene44052.t1 | AT3G06778 | 35.577 | 104 | 63 | 2 | 44 | 143 | 15 | 118 | 2.20e-12 | 67.4 |
| MS.gene44052.t1 | AT4G39960 | 45.349 | 86 | 47 | 0 | 63 | 148 | 81 | 166 | 1.83e-11 | 66.6 |
| MS.gene44052.t1 | AT4G39960 | 45.349 | 86 | 47 | 0 | 63 | 148 | 81 | 166 | 1.83e-11 | 66.6 |
| MS.gene44052.t1 | AT5G37760 | 31.788 | 151 | 73 | 2 | 13 | 163 | 79 | 199 | 2.93e-11 | 63.5 |
Find 112 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCTGTTGACTTTGGTTC+TGG | 0.183753 | 1.3:-57877959 | None:intergenic |
| GCCTGCGTTGGAACCTTTAT+CGG | 0.260641 | 1.3:-57877719 | None:intergenic |
| TTCTCAAAATTATTGAAATC+TGG | 0.288044 | 1.3:-57878295 | None:intergenic |
| ACCTCATCCCATCCCTCTAA+TGG | 0.305579 | 1.3:+57877443 | MS.gene44052:CDS |
| ATATATGTAGAACTGGAATT+TGG | 0.311647 | 1.3:-57877597 | None:intergenic |
| AAAGCAACACGTTTCATATA+AGG | 0.319773 | 1.3:+57878078 | MS.gene44052:CDS |
| CTACATATATGTTATAAATA+AGG | 0.331085 | 1.3:+57877610 | MS.gene44052:CDS |
| TGAACCTCGCCATCTTCATC+TGG | 0.334839 | 1.3:-57878457 | None:intergenic |
| CTTTCAAGCTGCAGATTACT+TGG | 0.337948 | 1.3:+57878422 | MS.gene44052:CDS |
| AACCTGCACAGCCGACATTC+TGG | 0.340367 | 1.3:+57877552 | MS.gene44052:CDS |
| TTCCCATCATTTGTACAGTT+TGG | 0.341473 | 1.3:+57877692 | MS.gene44052:CDS |
| AACATCAGCATACAGCCTTT+TGG | 0.350504 | 1.3:-57877120 | None:intergenic |
| CAAGCTGTCTAAGTCTGATA+TGG | 0.352317 | 1.3:+57877196 | MS.gene44052:CDS |
| GAAGCTGCTTTCAAGTTGAT+TGG | 0.361899 | 1.3:+57877332 | MS.gene44052:CDS |
| TTTATCACTCAACACCCTAT+TGG | 0.363699 | 1.3:-57877360 | None:intergenic |
| TTGACAAGAGCATAAAATCT+TGG | 0.369389 | 1.3:-57878385 | None:intergenic |
| TCAGAAATTGGGATATCAAT+TGG | 0.372459 | 1.3:+57878644 | MS.gene44052:CDS |
| TGCTGCAGGTTTCCCATTAG+AGG | 0.373658 | 1.3:-57877456 | None:intergenic |
| CAGCATCATGGTCATCTTCA+TGG | 0.379538 | 1.3:-57878105 | None:intergenic |
| AAGCTGCTTTCAAGTTGATT+GGG | 0.381170 | 1.3:+57877333 | MS.gene44052:CDS |
| TTTCTTTATGATTGCTTCCT+CGG | 0.386358 | 1.3:-57877252 | None:intergenic |
| ACATAAAGATGAGAAGATTA+AGG | 0.390025 | 1.3:+57877862 | MS.gene44052:CDS |
| AGTTGATTGGGGAAGCCAAT+AGG | 0.396668 | 1.3:+57877345 | MS.gene44052:CDS |
| CTTCTGACATTCAATCTTGA+AGG | 0.398614 | 1.3:-57878043 | None:intergenic |
| ACAGTTTGGTGCCCCGATAA+AGG | 0.399142 | 1.3:+57877706 | MS.gene44052:CDS |
| TGTATGAAAACATGTGCTAA+TGG | 0.410801 | 1.3:+57877827 | MS.gene44052:CDS |
| CCTGCGTTGGAACCTTTATC+GGG | 0.418804 | 1.3:-57877718 | None:intergenic |
| GTCCAGAATGTCGGCTGTGC+AGG | 0.420134 | 1.3:-57877554 | None:intergenic |
| ACAATGGTCTCTGGACTAGA+AGG | 0.425187 | 1.3:-57878262 | None:intergenic |
| ATGAAGATGGCGAGGTTCAT+TGG | 0.425997 | 1.3:+57878461 | MS.gene44052:CDS |
| CTAGAAGGCATATATGAATC+TGG | 0.427972 | 1.3:-57878247 | None:intergenic |
| TTATAACATATATGTAGAAC+TGG | 0.429465 | 1.3:-57877604 | None:intergenic |
| CCTCATCCCATCCCTCTAAT+GGG | 0.437981 | 1.3:+57877444 | MS.gene44052:CDS |
| CAAGTAATCTGCAGCTTGAA+AGG | 0.439819 | 1.3:-57878421 | None:intergenic |
| GTTGATTGGGGAAGCCAATA+GGG | 0.442301 | 1.3:+57877346 | MS.gene44052:CDS |
| TTGAATCTCTCTGTTGACTT+TGG | 0.447760 | 1.3:-57877965 | None:intergenic |
| GCACCAAACTGTACAAATGA+TGG | 0.448703 | 1.3:-57877695 | None:intergenic |
| AGATTGTGACTCCATTGGTT+TGG | 0.455595 | 1.3:-57877903 | None:intergenic |
| TCTGAAGATTCTCATGTTCA+AGG | 0.457275 | 1.3:+57878193 | MS.gene44052:CDS |
| TTCAGATGGGGATTCAAAGA+AGG | 0.462344 | 1.3:-57877530 | None:intergenic |
| GGAAATGATTATGAAAAGAA+AGG | 0.462654 | 1.3:+57877992 | MS.gene44052:CDS |
| AGCAGAAACTAAAATGCAAA+GGG | 0.462702 | 1.3:+57877061 | MS.gene44052:CDS |
| CGCACTGAAGTTTGCTAACA+AGG | 0.463840 | 1.3:+57877097 | MS.gene44052:CDS |
| TCAGGACAAACAATGGTCTC+TGG | 0.469282 | 1.3:-57878271 | None:intergenic |
| TGTTCAAGGTGATACGGTAT+TGG | 0.472410 | 1.3:+57878207 | MS.gene44052:CDS |
| CTTACATTTCTGACAGAGTA+GGG | 0.472701 | 1.3:-57877633 | None:intergenic |
| CCCATTAGAGGGATGGGATG+AGG | 0.475230 | 1.3:-57877444 | None:intergenic |
| CAAGCTGCAGATTACTTGGT+TGG | 0.486049 | 1.3:+57878426 | MS.gene44052:CDS |
| TTCCTAAGAAGGGAGAAACT+TGG | 0.487126 | 1.3:+57878614 | MS.gene44052:intron |
| GCGGTCTTTATACGACATAA+AGG | 0.497302 | 1.3:+57877388 | MS.gene44052:CDS |
| TTAGGAACTTGATTTGCTGC+AGG | 0.499707 | 1.3:-57877470 | None:intergenic |
| AAATTATTGAAATCTGGATC+AGG | 0.500522 | 1.3:-57878289 | None:intergenic |
| TTGAACTTACCACAAGCAAT+GGG | 0.504197 | 1.3:-57878499 | None:intergenic |
| TCACAATCTTCAAACAATGT+TGG | 0.509713 | 1.3:+57877917 | MS.gene44052:CDS |
| TAGATGCTGCAGCTCTAACA+TGG | 0.513583 | 1.3:-57877418 | None:intergenic |
| CGGCTGTGCAGGTTTCAGAT+GGG | 0.513871 | 1.3:-57877543 | None:intergenic |
| CAGGTTTCCCATTAGAGGGA+TGG | 0.518826 | 1.3:-57877451 | None:intergenic |
| AGGTTTCCCATTAGAGGGAT+GGG | 0.522178 | 1.3:-57877450 | None:intergenic |
| GGTGGAACACCCGTTGGTAG+TGG | 0.522855 | 1.3:+57877770 | MS.gene44052:CDS |
| TCGGCTGTGCAGGTTTCAGA+TGG | 0.522941 | 1.3:-57877544 | None:intergenic |
| TCCTAAGAAGGGAGAAACTT+GGG | 0.524490 | 1.3:+57878615 | MS.gene44052:intron |
| GACTCCATTGGTTTGGACAC+AGG | 0.525130 | 1.3:-57877896 | None:intergenic |
| AAGTAATCTGCAGCTTGAAA+GGG | 0.526697 | 1.3:-57878420 | None:intergenic |
| TTTGAACTTACCACAAGCAA+TGG | 0.531911 | 1.3:-57878500 | None:intergenic |
| TCATCCTTGTTACACTCCAT+TGG | 0.537571 | 1.3:-57877017 | None:intergenic |
| TTCTCATGTTCAAGGTGATA+CGG | 0.537680 | 1.3:+57878201 | MS.gene44052:CDS |
| TTTGAAGATTGTGACTCCAT+TGG | 0.538128 | 1.3:-57877908 | None:intergenic |
| TTCGATGATTCATCTTGTCG+TGG | 0.538609 | 1.3:-57878142 | None:intergenic |
| TCTTACATTTCTGACAGAGT+AGG | 0.540313 | 1.3:-57877634 | None:intergenic |
| TCTGCACATCCACTACCAAC+GGG | 0.540348 | 1.3:-57877779 | None:intergenic |
| CGACATTCTGGACAATGTGC+AGG | 0.540691 | 1.3:+57877564 | MS.gene44052:CDS |
| AAGTCTGATATGGACTGGTA+TGG | 0.542314 | 1.3:+57877206 | MS.gene44052:CDS |
| AGTTTGCTAACAAGGCCAAA+AGG | 0.546529 | 1.3:+57877105 | MS.gene44052:CDS |
| GTCTGCACATCCACTACCAA+CGG | 0.548463 | 1.3:-57877780 | None:intergenic |
| TATTCCTGTGTCCAAACCAA+TGG | 0.549550 | 1.3:+57877892 | MS.gene44052:CDS |
| GCTGCAGGTTTCCCATTAGA+GGG | 0.550927 | 1.3:-57877455 | None:intergenic |
| AAACCAGTCTCTAAAAGTAA+TGG | 0.559060 | 1.3:+57877749 | MS.gene44052:CDS |
| TAGCAGAAACTAAAATGCAA+AGG | 0.560764 | 1.3:+57877060 | MS.gene44052:CDS |
| AAAACATGTGCTAATGGAGT+TGG | 0.565348 | 1.3:+57877833 | MS.gene44052:CDS |
| TCAGATCCTTGCTGTTTGTG+AGG | 0.565840 | 1.3:+57877154 | MS.gene44052:CDS |
| GAAGCTGACCCAGATGAAGA+TGG | 0.566585 | 1.3:+57878448 | MS.gene44052:CDS |
| TCAGATGGGGATTCAAAGAA+GGG | 0.566815 | 1.3:-57877529 | None:intergenic |
| GGCTGTGCAGGTTTCAGATG+GGG | 0.569621 | 1.3:-57877542 | None:intergenic |
| CCCGATAAAGGTTCCAACGC+AGG | 0.570754 | 1.3:+57877718 | MS.gene44052:CDS |
| TGTCTAAGTCTGATATGGAC+TGG | 0.572481 | 1.3:+57877201 | MS.gene44052:CDS |
| GAACCTCGCCATCTTCATCT+GGG | 0.573701 | 1.3:-57878456 | None:intergenic |
| CCAGTCTCTAAAAGTAATGG+TGG | 0.583247 | 1.3:+57877752 | MS.gene44052:CDS |
| AAATCTTGGCATAGCATCAG+TGG | 0.589734 | 1.3:-57878371 | None:intergenic |
| AGGTGATACGGTATTGGAGT+CGG | 0.590303 | 1.3:+57878213 | MS.gene44052:CDS |
| CACCAAACTGTACAAATGAT+GGG | 0.592480 | 1.3:-57877694 | None:intergenic |
| ATCTGGATCAGGACAAACAA+TGG | 0.594934 | 1.3:-57878278 | None:intergenic |
| AGCTGCTTTCAAGTTGATTG+GGG | 0.595219 | 1.3:+57877334 | MS.gene44052:CDS |
| CTCACCAATGGAGTGTAACA+AGG | 0.597020 | 1.3:+57877013 | None:intergenic |
| AAAGATGAGAAGATTAAGGA+TGG | 0.602254 | 1.3:+57877866 | MS.gene44052:CDS |
| AGATGCTGCAGCTCTAACAT+GGG | 0.602611 | 1.3:-57877417 | None:intergenic |
| CTTCAAGATTGAATGTCAGA+AGG | 0.611129 | 1.3:+57878044 | MS.gene44052:CDS |
| TAACAAGGATGACGCTGTGA+AGG | 0.611288 | 1.3:+57877028 | MS.gene44052:CDS |
| GCAGATTTGCCCATTGCTTG+TGG | 0.637267 | 1.3:+57878490 | MS.gene44052:CDS |
| ACAAATGATGGGAAAGTCTG+TGG | 0.637568 | 1.3:-57877683 | None:intergenic |
| GAAGGCATATATGAATCTGG+TGG | 0.638478 | 1.3:-57878244 | None:intergenic |
| TTCATACATGAAGGATACGA+CGG | 0.643724 | 1.3:-57877812 | None:intergenic |
| CTGCACATTGTCCAGAATGT+CGG | 0.643864 | 1.3:-57877563 | None:intergenic |
| AGTAATGGTGGAACACCCGT+TGG | 0.646014 | 1.3:+57877764 | MS.gene44052:CDS |
| TCTCAGAAAACTACAGATCG+TGG | 0.646401 | 1.3:+57878532 | MS.gene44052:CDS |
| CAGATGGGGATTCAAAGAAG+GGG | 0.650743 | 1.3:-57877528 | None:intergenic |
| TGACCCAGATGAAGATGGCG+AGG | 0.654361 | 1.3:+57878453 | MS.gene44052:CDS |
| TCAACAGAGAGATTCAACAC+TGG | 0.681122 | 1.3:+57877971 | MS.gene44052:CDS |
| CTGCGTTGGAACCTTTATCG+GGG | 0.681163 | 1.3:-57877717 | None:intergenic |
| TGTGAACCTCACAAACAGCA+AGG | 0.689042 | 1.3:-57877160 | None:intergenic |
| AATCTGCAGCTTGAAAGGGA+AGG | 0.703720 | 1.3:-57878416 | None:intergenic |
| GCAGAAACTAAAATGCAAAG+GGG | 0.741214 | 1.3:+57877062 | MS.gene44052:CDS |
| TGTTGAGTGATAAAGCAACG+CGG | 0.847765 | 1.3:+57877369 | MS.gene44052:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTACATATATGTTATAAATA+AGG | + | chr1.3:57877610-57877629 | MS.gene44052:CDS | 15.0% |
| !! | TTATAACATATATGTAGAAC+TGG | - | chr1.3:57877607-57877626 | None:intergenic | 20.0% |
| !! | TTCTCAAAATTATTGAAATC+TGG | - | chr1.3:57878298-57878317 | None:intergenic | 20.0% |
| !!! | AGATTTCAATAATTTTGAGA+AGG | + | chr1.3:57878297-57878316 | MS.gene44052:CDS | 20.0% |
| !!! | TTTTGCTGTAAATCAATTAT+GGG | + | chr1.3:57878336-57878355 | MS.gene44052:CDS | 20.0% |
| ! | AAATTATTGAAATCTGGATC+AGG | - | chr1.3:57878292-57878311 | None:intergenic | 25.0% |
| ! | ACATAAAGATGAGAAGATTA+AGG | + | chr1.3:57877862-57877881 | MS.gene44052:CDS | 25.0% |
| ! | ATATATGTAGAACTGGAATT+TGG | - | chr1.3:57877600-57877619 | None:intergenic | 25.0% |
| ! | CATCAGATTCAGTTTATAAA+AGG | + | chr1.3:57878565-57878584 | MS.gene44052:intron | 25.0% |
| ! | GGAAATGATTATGAAAAGAA+AGG | + | chr1.3:57877992-57878011 | MS.gene44052:CDS | 25.0% |
| !!! | GTTTTGCTGTAAATCAATTA+TGG | + | chr1.3:57878335-57878354 | MS.gene44052:CDS | 25.0% |
| AAAGATGAGAAGATTAAGGA+TGG | + | chr1.3:57877866-57877885 | MS.gene44052:CDS | 30.0% | |
| AAAGCAACACGTTTCATATA+AGG | + | chr1.3:57878078-57878097 | MS.gene44052:CDS | 30.0% | |
| AGCAGAAACTAAAATGCAAA+GGG | + | chr1.3:57877061-57877080 | MS.gene44052:CDS | 30.0% | |
| CCTGATAAAAATAAATCTGC+TGG | + | chr1.3:57877305-57877324 | MS.gene44052:CDS | 30.0% | |
| TAGCAGAAACTAAAATGCAA+AGG | + | chr1.3:57877060-57877079 | MS.gene44052:CDS | 30.0% | |
| TCACAATCTTCAAACAATGT+TGG | + | chr1.3:57877917-57877936 | MS.gene44052:CDS | 30.0% | |
| TCAGAAATTGGGATATCAAT+TGG | + | chr1.3:57878644-57878663 | MS.gene44052:CDS | 30.0% | |
| TGTATGAAAACATGTGCTAA+TGG | + | chr1.3:57877827-57877846 | MS.gene44052:CDS | 30.0% | |
| TTTCTTTATGATTGCTTCCT+CGG | - | chr1.3:57877255-57877274 | None:intergenic | 30.0% | |
| ! | AAACCAGTCTCTAAAAGTAA+TGG | + | chr1.3:57877749-57877768 | MS.gene44052:CDS | 30.0% |
| ! | TTGACAAGAGCATAAAATCT+TGG | - | chr1.3:57878388-57878407 | None:intergenic | 30.0% |
| ! | TTGGGCAATTTTCAGAAATT+GGG | + | chr1.3:57878633-57878652 | MS.gene44052:CDS | 30.0% |
| !! | CAATAATTTTGAGAAGGACA+AGG | + | chr1.3:57878303-57878322 | MS.gene44052:CDS | 30.0% |
| !! | TTCTGATGTTTTGTTGCATT+AGG | - | chr1.3:57877491-57877510 | None:intergenic | 30.0% |
| !!! | CCAGCAGATTTATTTTTATC+AGG | - | chr1.3:57877308-57877327 | None:intergenic | 30.0% |
| !!! | TTACTTTTAGAGACTGGTTT+TGG | - | chr1.3:57877749-57877768 | None:intergenic | 30.0% |
| AAAACATGTGCTAATGGAGT+TGG | + | chr1.3:57877833-57877852 | MS.gene44052:CDS | 35.0% | |
| AAGTAATCTGCAGCTTGAAA+GGG | - | chr1.3:57878423-57878442 | None:intergenic | 35.0% | |
| CACCAAACTGTACAAATGAT+GGG | - | chr1.3:57877697-57877716 | None:intergenic | 35.0% | |
| CTTACATTTCTGACAGAGTA+GGG | - | chr1.3:57877636-57877655 | None:intergenic | 35.0% | |
| CTTCAAGATTGAATGTCAGA+AGG | + | chr1.3:57878044-57878063 | MS.gene44052:CDS | 35.0% | |
| CTTCTGACATTCAATCTTGA+AGG | - | chr1.3:57878046-57878065 | None:intergenic | 35.0% | |
| GCAGAAACTAAAATGCAAAG+GGG | + | chr1.3:57877062-57877081 | MS.gene44052:CDS | 35.0% | |
| TACCTAGTGTTTCCTAAGAA+GGG | + | chr1.3:57878604-57878623 | MS.gene44052:intron | 35.0% | |
| TCAGACTGAAAAATTATCCG+AGG | + | chr1.3:57877235-57877254 | MS.gene44052:CDS | 35.0% | |
| TCTGAAGATTCTCATGTTCA+AGG | + | chr1.3:57878193-57878212 | MS.gene44052:CDS | 35.0% | |
| TCTTACATTTCTGACAGAGT+AGG | - | chr1.3:57877637-57877656 | None:intergenic | 35.0% | |
| TTACCTAGTGTTTCCTAAGA+AGG | + | chr1.3:57878603-57878622 | MS.gene44052:intron | 35.0% | |
| TTCATACATGAAGGATACGA+CGG | - | chr1.3:57877815-57877834 | None:intergenic | 35.0% | |
| TTCCCATCATTTGTACAGTT+TGG | + | chr1.3:57877692-57877711 | MS.gene44052:CDS | 35.0% | |
| TTCTCATGTTCAAGGTGATA+CGG | + | chr1.3:57878201-57878220 | MS.gene44052:CDS | 35.0% | |
| TTGAACTTACCACAAGCAAT+GGG | - | chr1.3:57878502-57878521 | None:intergenic | 35.0% | |
| TTTATCACTCAACACCCTAT+TGG | - | chr1.3:57877363-57877382 | None:intergenic | 35.0% | |
| TTTGAACTTACCACAAGCAA+TGG | - | chr1.3:57878503-57878522 | None:intergenic | 35.0% | |
| TTTGAAGATTGTGACTCCAT+TGG | - | chr1.3:57877911-57877930 | None:intergenic | 35.0% | |
| ! | CTAGAAGGCATATATGAATC+TGG | - | chr1.3:57878250-57878269 | None:intergenic | 35.0% |
| ! | CTTGGGCAATTTTCAGAAAT+TGG | + | chr1.3:57878632-57878651 | MS.gene44052:CDS | 35.0% |
| ! | GCACATGTTTTCATACATGA+AGG | - | chr1.3:57877824-57877843 | None:intergenic | 35.0% |
| !! | AAGCTGCTTTCAAGTTGATT+GGG | + | chr1.3:57877333-57877352 | MS.gene44052:CDS | 35.0% |
| !! | ATCTGTAGTTTTCTGAGAGT+TGG | - | chr1.3:57878530-57878549 | None:intergenic | 35.0% |
| !! | TTGAATCTCTCTGTTGACTT+TGG | - | chr1.3:57877968-57877987 | None:intergenic | 35.0% |
| !! | TTTTAGAAGGAACAGCATCA+TGG | - | chr1.3:57878120-57878139 | None:intergenic | 35.0% |
| AAATCTTGGCATAGCATCAG+TGG | - | chr1.3:57878374-57878393 | None:intergenic | 40.0% | |
| ATCTGGATCAGGACAAACAA+TGG | - | chr1.3:57878281-57878300 | None:intergenic | 40.0% | |
| CAAGCTGTCTAAGTCTGATA+TGG | + | chr1.3:57877196-57877215 | MS.gene44052:CDS | 40.0% | |
| CAAGTAATCTGCAGCTTGAA+AGG | - | chr1.3:57878424-57878443 | None:intergenic | 40.0% | |
| CTTTCAAGCTGCAGATTACT+TGG | + | chr1.3:57878422-57878441 | MS.gene44052:CDS | 40.0% | |
| GCACCAAACTGTACAAATGA+TGG | - | chr1.3:57877698-57877717 | None:intergenic | 40.0% | |
| GCGGTCTTTATACGACATAA+AGG | + | chr1.3:57877388-57877407 | MS.gene44052:CDS | 40.0% | |
| TATTCCTGTGTCCAAACCAA+TGG | + | chr1.3:57877892-57877911 | MS.gene44052:CDS | 40.0% | |
| TCAACAGAGAGATTCAACAC+TGG | + | chr1.3:57877971-57877990 | MS.gene44052:CDS | 40.0% | |
| TCAGATGGGGATTCAAAGAA+GGG | - | chr1.3:57877532-57877551 | None:intergenic | 40.0% | |
| TCCTAAGAAGGGAGAAACTT+GGG | + | chr1.3:57878615-57878634 | MS.gene44052:intron | 40.0% | |
| TCTCAGAAAACTACAGATCG+TGG | + | chr1.3:57878532-57878551 | MS.gene44052:CDS | 40.0% | |
| TGTCTAAGTCTGATATGGAC+TGG | + | chr1.3:57877201-57877220 | MS.gene44052:CDS | 40.0% | |
| TGTTCAAGGTGATACGGTAT+TGG | + | chr1.3:57878207-57878226 | MS.gene44052:CDS | 40.0% | |
| TGTTGAGTGATAAAGCAACG+CGG | + | chr1.3:57877369-57877388 | MS.gene44052:CDS | 40.0% | |
| TTCAGATGGGGATTCAAAGA+AGG | - | chr1.3:57877533-57877552 | None:intergenic | 40.0% | |
| TTCCTAAGAAGGGAGAAACT+TGG | + | chr1.3:57878614-57878633 | MS.gene44052:intron | 40.0% | |
| TTCGATGATTCATCTTGTCG+TGG | - | chr1.3:57878145-57878164 | None:intergenic | 40.0% | |
| ! | AACATCAGCATACAGCCTTT+TGG | - | chr1.3:57877123-57877142 | None:intergenic | 40.0% |
| ! | ACAAATGATGGGAAAGTCTG+TGG | - | chr1.3:57877686-57877705 | None:intergenic | 40.0% |
| ! | AGATTGTGACTCCATTGGTT+TGG | - | chr1.3:57877906-57877925 | None:intergenic | 40.0% |
| ! | CCAGTCTCTAAAAGTAATGG+TGG | + | chr1.3:57877752-57877771 | MS.gene44052:CDS | 40.0% |
| ! | GAAGGCATATATGAATCTGG+TGG | - | chr1.3:57878247-57878266 | None:intergenic | 40.0% |
| ! | TCTTGTCGTGGCTTTTTAGA+AGG | - | chr1.3:57878133-57878152 | None:intergenic | 40.0% |
| !! | AAGTCTGATATGGACTGGTA+TGG | + | chr1.3:57877206-57877225 | MS.gene44052:CDS | 40.0% |
| !! | AGCTGCTTTCAAGTTGATTG+GGG | + | chr1.3:57877334-57877353 | MS.gene44052:CDS | 40.0% |
| !! | AGTTTGCTAACAAGGCCAAA+AGG | + | chr1.3:57877105-57877124 | MS.gene44052:CDS | 40.0% |
| !! | CCACCATTACTTTTAGAGAC+TGG | - | chr1.3:57877755-57877774 | None:intergenic | 40.0% |
| !! | GAAGCTGCTTTCAAGTTGAT+TGG | + | chr1.3:57877332-57877351 | MS.gene44052:CDS | 40.0% |
| !! | TTAGGAACTTGATTTGCTGC+AGG | - | chr1.3:57877473-57877492 | None:intergenic | 40.0% |
| !!! | CTTTTAGAGACTGGTTTTGG+TGG | - | chr1.3:57877746-57877765 | None:intergenic | 40.0% |
| !!! | TGAAACGTGTTGCTTTTGTC+TGG | - | chr1.3:57878074-57878093 | None:intergenic | 40.0% |
| AATCTGCAGCTTGAAAGGGA+AGG | - | chr1.3:57878419-57878438 | None:intergenic | 45.0% | |
| AGGTTTCCCATTAGAGGGAT+GGG | - | chr1.3:57877453-57877472 | None:intergenic | 45.0% | |
| AGTTGATTGGGGAAGCCAAT+AGG | + | chr1.3:57877345-57877364 | MS.gene44052:CDS | 45.0% | |
| ATGAAGATGGCGAGGTTCAT+TGG | + | chr1.3:57878461-57878480 | MS.gene44052:CDS | 45.0% | |
| CAAGCTGCAGATTACTTGGT+TGG | + | chr1.3:57878426-57878445 | MS.gene44052:CDS | 45.0% | |
| CAGATGGGGATTCAAAGAAG+GGG | - | chr1.3:57877531-57877550 | None:intergenic | 45.0% | |
| CAGCATCATGGTCATCTTCA+TGG | - | chr1.3:57878108-57878127 | None:intergenic | 45.0% | |
| CTCCCTTCTTAGGAAACACT+AGG | - | chr1.3:57878609-57878628 | None:intergenic | 45.0% | |
| CTGCACATTGTCCAGAATGT+CGG | - | chr1.3:57877566-57877585 | None:intergenic | 45.0% | |
| GTTGATTGGGGAAGCCAATA+GGG | + | chr1.3:57877346-57877365 | MS.gene44052:CDS | 45.0% | |
| TAACAAGGATGACGCTGTGA+AGG | + | chr1.3:57877028-57877047 | MS.gene44052:CDS | 45.0% | |
| TCAGGACAAACAATGGTCTC+TGG | - | chr1.3:57878274-57878293 | None:intergenic | 45.0% | |
| TGTGAACCTCACAAACAGCA+AGG | - | chr1.3:57877163-57877182 | None:intergenic | 45.0% | |
| ! | ACAATGGTCTCTGGACTAGA+AGG | - | chr1.3:57878265-57878284 | None:intergenic | 45.0% |
| ! | AGATGCTGCAGCTCTAACAT+GGG | - | chr1.3:57877420-57877439 | None:intergenic | 45.0% |
| ! | AGGTGATACGGTATTGGAGT+CGG | + | chr1.3:57878213-57878232 | MS.gene44052:CDS | 45.0% |
| ! | TAGATGCTGCAGCTCTAACA+TGG | - | chr1.3:57877421-57877440 | None:intergenic | 45.0% |
| !! | CGCACTGAAGTTTGCTAACA+AGG | + | chr1.3:57877097-57877116 | MS.gene44052:CDS | 45.0% |
| !! | CTCTCTGTTGACTTTGGTTC+TGG | - | chr1.3:57877962-57877981 | None:intergenic | 45.0% |
| !! | TCAGATCCTTGCTGTTTGTG+AGG | + | chr1.3:57877154-57877173 | MS.gene44052:CDS | 45.0% |
| ACCTCATCCCATCCCTCTAA+TGG | + | chr1.3:57877443-57877462 | MS.gene44052:CDS | 50.0% | |
| CAGGTTTCCCATTAGAGGGA+TGG | - | chr1.3:57877454-57877473 | None:intergenic | 50.0% | |
| CCTCATCCCATCCCTCTAAT+GGG | + | chr1.3:57877444-57877463 | MS.gene44052:CDS | 50.0% | |
| CCTGCGTTGGAACCTTTATC+GGG | - | chr1.3:57877721-57877740 | None:intergenic | 50.0% | |
| CGACATTCTGGACAATGTGC+AGG | + | chr1.3:57877564-57877583 | MS.gene44052:CDS | 50.0% | |
| CTGCGTTGGAACCTTTATCG+GGG | - | chr1.3:57877720-57877739 | None:intergenic | 50.0% | |
| GAACCTCGCCATCTTCATCT+GGG | - | chr1.3:57878459-57878478 | None:intergenic | 50.0% | |
| GAAGCTGACCCAGATGAAGA+TGG | + | chr1.3:57878448-57878467 | MS.gene44052:CDS | 50.0% | |
| GCAGATTTGCCCATTGCTTG+TGG | + | chr1.3:57878490-57878509 | MS.gene44052:CDS | 50.0% | |
| GCCCAAGTTTCTCCCTTCTT+AGG | - | chr1.3:57878619-57878638 | None:intergenic | 50.0% | |
| GCCTGCGTTGGAACCTTTAT+CGG | - | chr1.3:57877722-57877741 | None:intergenic | 50.0% | |
| GCTGCAGGTTTCCCATTAGA+GGG | - | chr1.3:57877458-57877477 | None:intergenic | 50.0% | |
| GTCTGCACATCCACTACCAA+CGG | - | chr1.3:57877783-57877802 | None:intergenic | 50.0% | |
| TCTGCACATCCACTACCAAC+GGG | - | chr1.3:57877782-57877801 | None:intergenic | 50.0% | |
| TGAACCTCGCCATCTTCATC+TGG | - | chr1.3:57878460-57878479 | None:intergenic | 50.0% | |
| TGCTGCAGGTTTCCCATTAG+AGG | - | chr1.3:57877459-57877478 | None:intergenic | 50.0% | |
| ! | AGTAATGGTGGAACACCCGT+TGG | + | chr1.3:57877764-57877783 | MS.gene44052:CDS | 50.0% |
| !! | ACAGTTTGGTGCCCCGATAA+AGG | + | chr1.3:57877706-57877725 | MS.gene44052:CDS | 50.0% |
| !! | GACTCCATTGGTTTGGACAC+AGG | - | chr1.3:57877899-57877918 | None:intergenic | 50.0% |
| AACCTGCACAGCCGACATTC+TGG | + | chr1.3:57877552-57877571 | MS.gene44052:CDS | 55.0% | |
| CCCATTAGAGGGATGGGATG+AGG | - | chr1.3:57877447-57877466 | None:intergenic | 55.0% | |
| CCCGATAAAGGTTCCAACGC+AGG | + | chr1.3:57877718-57877737 | MS.gene44052:CDS | 55.0% | |
| CGGCTGTGCAGGTTTCAGAT+GGG | - | chr1.3:57877546-57877565 | None:intergenic | 55.0% | |
| GGCTGTGCAGGTTTCAGATG+GGG | - | chr1.3:57877545-57877564 | None:intergenic | 55.0% | |
| TCGGCTGTGCAGGTTTCAGA+TGG | - | chr1.3:57877547-57877566 | None:intergenic | 55.0% | |
| TGACCCAGATGAAGATGGCG+AGG | + | chr1.3:57878453-57878472 | MS.gene44052:CDS | 55.0% | |
| ! | GGTGGAACACCCGTTGGTAG+TGG | + | chr1.3:57877770-57877789 | MS.gene44052:CDS | 60.0% |
| ! | GTCCAGAATGTCGGCTGTGC+AGG | - | chr1.3:57877557-57877576 | None:intergenic | 60.0% |
| !! | GGTTTTGGTGGAGCCTGCGT+TGG | - | chr1.3:57877734-57877753 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 57877020 | 57878674 | 57877020 | ID=MS.gene44052 |
| chr1.3 | mRNA | 57877020 | 57878674 | 57877020 | ID=MS.gene44052.t1;Parent=MS.gene44052 |
| chr1.3 | exon | 57877020 | 57878553 | 57877020 | ID=MS.gene44052.t1.exon1;Parent=MS.gene44052.t1 |
| chr1.3 | CDS | 57877020 | 57878553 | 57877020 | ID=cds.MS.gene44052.t1;Parent=MS.gene44052.t1 |
| chr1.3 | exon | 57878625 | 57878674 | 57878625 | ID=MS.gene44052.t1.exon2;Parent=MS.gene44052.t1 |
| chr1.3 | CDS | 57878625 | 57878674 | 57878625 | ID=cds.MS.gene44052.t1;Parent=MS.gene44052.t1 |
| Gene Sequence |
| Protein sequence |
