Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48017.t1 | XP_003617362.1 | 89.1 | 594 | 27 | 1 | 1 | 556 | 1 | 594 | 1.40E-257 | 898.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48017.t1 | E7BQV0 | 55.3 | 528 | 194 | 4 | 65 | 554 | 61 | 584 | 1.3e-150 | 534.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48017.t1 | G7K396 | 89.1 | 594 | 27 | 1 | 1 | 556 | 1 | 594 | 1.0e-257 | 898.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050669 | MS.gene48017 | 0.806237 | 9.07E-50 | -1.69E-46 |
| MS.gene050961 | MS.gene48017 | 0.808575 | 2.89E-50 | -1.69E-46 |
| MS.gene051279 | MS.gene48017 | 0.812818 | 3.50E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene48017 | 0.830409 | 2.98E-55 | -1.69E-46 |
| MS.gene052016 | MS.gene48017 | 0.841751 | 3.93E-58 | -1.69E-46 |
| MS.gene052037 | MS.gene48017 | 0.80561 | 1.23E-49 | -1.69E-46 |
| MS.gene052118 | MS.gene48017 | 0.809794 | 1.59E-50 | -1.69E-46 |
| MS.gene052463 | MS.gene48017 | 0.801124 | 1.04E-48 | -1.69E-46 |
| MS.gene053620 | MS.gene48017 | 0.817718 | 2.85E-52 | -1.69E-46 |
| MS.gene054178 | MS.gene48017 | 0.819286 | 1.26E-52 | -1.69E-46 |
| MS.gene05454 | MS.gene48017 | 0.807494 | 4.92E-50 | -1.69E-46 |
| MS.gene054892 | MS.gene48017 | 0.85019 | 1.99E-60 | -1.69E-46 |
| MS.gene054893 | MS.gene48017 | 0.841107 | 5.81E-58 | -1.69E-46 |
| MS.gene055229 | MS.gene48017 | 0.841798 | 3.82E-58 | -1.69E-46 |
| MS.gene05539 | MS.gene48017 | 0.801591 | 8.38E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene48017 | 0.813994 | 1.93E-51 | -1.69E-46 |
| MS.gene056444 | MS.gene48017 | 0.801732 | 7.84E-49 | -1.69E-46 |
| MS.gene056677 | MS.gene48017 | 0.81482 | 1.27E-51 | -1.69E-46 |
| MS.gene056699 | MS.gene48017 | 0.812782 | 3.57E-51 | -1.69E-46 |
| MS.gene05686 | MS.gene48017 | 0.832461 | 9.33E-56 | -1.69E-46 |
| MS.gene057102 | MS.gene48017 | 0.813818 | 2.11E-51 | -1.69E-46 |
| MS.gene057329 | MS.gene48017 | 0.808278 | 3.35E-50 | -1.69E-46 |
| MS.gene058649 | MS.gene48017 | 0.804581 | 2.02E-49 | -1.69E-46 |
| MS.gene059170 | MS.gene48017 | 0.806225 | 9.12E-50 | -1.69E-46 |
| MS.gene059774 | MS.gene48017 | 0.852537 | 4.33E-61 | -1.69E-46 |
| MS.gene05985 | MS.gene48017 | -0.809085 | 2.25E-50 | -1.69E-46 |
| MS.gene060522 | MS.gene48017 | 0.816769 | 4.66E-52 | -1.69E-46 |
| MS.gene060697 | MS.gene48017 | 0.849222 | 3.71E-60 | -1.69E-46 |
| MS.gene060785 | MS.gene48017 | 0.804342 | 2.26E-49 | -1.69E-46 |
| MS.gene060906 | MS.gene48017 | 0.803071 | 4.15E-49 | -1.69E-46 |
| MS.gene061188 | MS.gene48017 | 0.825333 | 4.96E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48017.t1 | MTR_5g090770 | 89.226 | 594 | 26 | 1 | 1 | 556 | 1 | 594 | 0.0 | 1021 |
| MS.gene48017.t1 | MTR_5g090770 | 87.302 | 441 | 18 | 1 | 1 | 403 | 1 | 441 | 0.0 | 748 |
| MS.gene48017.t1 | MTR_2g028950 | 56.624 | 551 | 192 | 5 | 18 | 527 | 19 | 563 | 0.0 | 613 |
| MS.gene48017.t1 | MTR_2g028950 | 54.898 | 490 | 174 | 5 | 18 | 466 | 19 | 502 | 5.66e-179 | 514 |
| MS.gene48017.t1 | MTR_2g039880 | 37.679 | 560 | 297 | 11 | 10 | 527 | 6 | 555 | 4.18e-107 | 333 |
| MS.gene48017.t1 | MTR_1g051025 | 32.792 | 308 | 188 | 6 | 80 | 370 | 80 | 385 | 5.04e-42 | 157 |
| MS.gene48017.t1 | MTR_7g090020 | 32.686 | 309 | 188 | 7 | 80 | 370 | 80 | 386 | 1.47e-41 | 156 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48017.t1 | AT5G45110 | 49.527 | 529 | 215 | 6 | 42 | 524 | 35 | 557 | 1.71e-171 | 498 |
| MS.gene48017.t1 | AT4G19660 | 49.434 | 530 | 203 | 9 | 47 | 524 | 34 | 550 | 2.62e-165 | 482 |
| MS.gene48017.t1 | AT4G19660 | 46.235 | 571 | 215 | 10 | 33 | 524 | 20 | 577 | 1.87e-159 | 468 |
| MS.gene48017.t1 | AT5G45110 | 48.180 | 467 | 194 | 5 | 42 | 466 | 35 | 495 | 1.41e-144 | 427 |
| MS.gene48017.t1 | AT4G26120 | 40.546 | 476 | 259 | 9 | 86 | 552 | 122 | 582 | 1.18e-104 | 327 |
| MS.gene48017.t1 | AT4G26120 | 40.546 | 476 | 259 | 9 | 86 | 552 | 123 | 583 | 1.36e-104 | 327 |
| MS.gene48017.t1 | AT1G64280 | 40.798 | 451 | 247 | 6 | 86 | 527 | 123 | 562 | 3.87e-103 | 323 |
| MS.gene48017.t1 | AT2G41370 | 33.333 | 309 | 188 | 7 | 77 | 370 | 86 | 391 | 1.04e-43 | 162 |
| MS.gene48017.t1 | AT3G57130 | 32.673 | 303 | 190 | 7 | 80 | 370 | 84 | 384 | 2.62e-43 | 161 |
Find 92 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGGGATTGTAATCTTAAT+TGG | 0.155412 | 5.2:-76783292 | None:intergenic |
| GAGCCTTGTCAACAAAATTT+AGG | 0.226635 | 5.2:-76782045 | None:intergenic |
| TGACATGGACATCATATATT+TGG | 0.235777 | 5.2:+76782159 | MS.gene48017:CDS |
| TTTGTATACTGGAAAGTTAA+AGG | 0.276961 | 5.2:+76781179 | MS.gene48017:CDS |
| TTCTTGCATTATTTGTATAC+TGG | 0.287135 | 5.2:+76781168 | MS.gene48017:CDS |
| TGATGTGCAGCCATTAAAAT+TGG | 0.325931 | 5.2:-76782085 | None:intergenic |
| ATGAAAGATTTGGTGCCTTA+TGG | 0.340611 | 5.2:+76781117 | MS.gene48017:intron |
| TTGTGCATATTGTGATTCTA+AGG | 0.357367 | 5.2:+76782405 | MS.gene48017:CDS |
| CATTGCCACATGTTCATTGT+TGG | 0.365929 | 5.2:-76780872 | None:intergenic |
| GCATCAGAAACCACTCTTGA+TGG | 0.370481 | 5.2:+76782562 | MS.gene48017:CDS |
| GTTCAAGAAGTTCTTACTCT+TGG | 0.391310 | 5.2:+76782430 | MS.gene48017:CDS |
| AACGAAGAAAGCACGGTTCA+TGG | 0.394343 | 5.2:+76783550 | MS.gene48017:CDS |
| ATCTGCCCCAGCATTCTCTA+TGG | 0.400544 | 5.2:-76783177 | None:intergenic |
| CGTCAGAGTCCAATGCCTTA+AGG | 0.406730 | 5.2:-76782309 | None:intergenic |
| TGCAAGTTCAACAGCTTTGA+AGG | 0.409850 | 5.2:+76783214 | MS.gene48017:CDS |
| GGTTCCACTTCCATTGCATC+TGG | 0.423349 | 5.2:-76782253 | None:intergenic |
| ATTGCATCTGGTGTTGATTC+CGG | 0.423636 | 5.2:-76782241 | None:intergenic |
| GAAGGCATTTCACAAGGATA+TGG | 0.425039 | 5.2:+76783592 | MS.gene48017:CDS |
| CTTCTTCCGTTCCCTTCTCT+AGG | 0.435165 | 5.2:-76783520 | None:intergenic |
| TGTTCTTTCCTGCGGAGGCA+AGG | 0.474216 | 5.2:+76783150 | MS.gene48017:CDS |
| TGTATCCACGAGGATTCTTA+AGG | 0.478040 | 5.2:-76782468 | None:intergenic |
| AGAAGTTCTTACTCTTGGAT+TGG | 0.484032 | 5.2:+76782435 | MS.gene48017:CDS |
| CTCTTATCATTCACAGTCAC+AGG | 0.484685 | 5.2:-76782274 | None:intergenic |
| CTGTGAATGATAAGAGTGTC+AGG | 0.490919 | 5.2:+76782281 | MS.gene48017:CDS |
| GAGTGTCAGGAAAATCCTTA+AGG | 0.494210 | 5.2:+76782294 | MS.gene48017:CDS |
| CACATGTTCATTGTTGGTTG+AGG | 0.498708 | 5.2:-76780866 | None:intergenic |
| CCTCCGAGTCCAACCTCTGC+CGG | 0.499314 | 5.2:+76782222 | MS.gene48017:CDS |
| CAGGAAAATCCTTAAGGCAT+TGG | 0.500644 | 5.2:+76782300 | MS.gene48017:CDS |
| GGGTAGCCATAGAGAATGCT+GGG | 0.504854 | 5.2:+76783171 | MS.gene48017:CDS |
| TCTGGTGTTGATTCCGGCAG+AGG | 0.505676 | 5.2:-76782235 | None:intergenic |
| AAGCTCTTTCATCTGAAAAG+TGG | 0.506831 | 5.2:-76781301 | None:intergenic |
| ATGGCTACCCTTGCCTCCGC+AGG | 0.508622 | 5.2:-76783158 | None:intergenic |
| AGGGTAGCCATAGAGAATGC+TGG | 0.515215 | 5.2:+76783170 | MS.gene48017:CDS |
| TTTCAATAGTGCAACCAAGA+TGG | 0.516370 | 5.2:-76782527 | None:intergenic |
| TGCATTGTCTTCTACATCAT+CGG | 0.516416 | 5.2:+76783643 | MS.gene48017:CDS |
| TACATCATCGGCAAGTCGTA+GGG | 0.521228 | 5.2:+76783655 | MS.gene48017:CDS |
| ACGAAAGGATCCATCCATCT+TGG | 0.521666 | 5.2:+76782513 | MS.gene48017:CDS |
| ATTCCGGCAGAGGTTGGACT+CGG | 0.522410 | 5.2:-76782225 | None:intergenic |
| TCACGTTGCCGCAAGACGAA+AGG | 0.524031 | 5.2:+76782498 | MS.gene48017:CDS |
| GAATGCAATGAGAGAGAAGC+TGG | 0.524808 | 5.2:-76782120 | None:intergenic |
| GTTCTTTCCTGCGGAGGCAA+GGG | 0.525293 | 5.2:+76783151 | MS.gene48017:CDS |
| TCCAAAGCAAAATTGATAGC+AGG | 0.525538 | 5.2:-76781261 | None:intergenic |
| AAGTTCTATGTCAGTGAACA+TGG | 0.525587 | 5.2:+76782711 | MS.gene48017:CDS |
| CTACATCATCGGCAAGTCGT+AGG | 0.526560 | 5.2:+76783654 | MS.gene48017:CDS |
| GTGTTGATTCCGGCAGAGGT+TGG | 0.527987 | 5.2:-76782231 | None:intergenic |
| AAATTGTGTACAGTTGAGAA+TGG | 0.529000 | 5.2:+76783425 | MS.gene48017:intron |
| TGTGTACAGTTGAGAATGGT+AGG | 0.529889 | 5.2:+76783429 | MS.gene48017:intron |
| GGATGGATCCTTTCGTCTTG+CGG | 0.530660 | 5.2:-76782506 | None:intergenic |
| CTGGATTACCTTGAAAATAG+AGG | 0.531111 | 5.2:+76782775 | MS.gene48017:CDS |
| TTGGTGCCTTATGGTAGTGT+TGG | 0.531830 | 5.2:+76781126 | MS.gene48017:CDS |
| AACACCAGATGCAATGGAAG+TGG | 0.536591 | 5.2:+76782249 | MS.gene48017:CDS |
| CGGCAGAGGTTGGACTCGGA+GGG | 0.538294 | 5.2:-76782221 | None:intergenic |
| AATTTCTTCAACAAGAATCT+CGG | 0.543046 | 5.2:-76780980 | None:intergenic |
| GGAAGGAGTCTCACAAGGAT+AGG | 0.544010 | 5.2:+76782653 | MS.gene48017:CDS |
| CTTGTTGAAGAAATTCCTGT+TGG | 0.546823 | 5.2:+76780988 | MS.gene48017:CDS |
| CATGTTGTCACTTCTGTTGG+TGG | 0.549763 | 5.2:-76781204 | None:intergenic |
| TGCTAGGCTGTTCTTTCCTG+CGG | 0.553264 | 5.2:+76783142 | MS.gene48017:CDS |
| ATGTTGCAGTTGCATTTGCT+AGG | 0.553352 | 5.2:+76783126 | MS.gene48017:intron |
| CATCACTCAATAACTTCTCA+AGG | 0.556447 | 5.2:-76780936 | None:intergenic |
| ATATCTAGACGATGATATGC+CGG | 0.559903 | 5.2:+76783487 | MS.gene48017:CDS |
| TCAGAGATTGACGAGGCGAA+AGG | 0.561716 | 5.2:+76782606 | MS.gene48017:CDS |
| TCATATCCAACACTACCATA+AGG | 0.563466 | 5.2:-76781132 | None:intergenic |
| AGCAGAGAACGAAGAAAGCA+CGG | 0.564815 | 5.2:+76783543 | MS.gene48017:CDS |
| AATAGTGCAACCAAGATGGA+TGG | 0.572602 | 5.2:-76782523 | None:intergenic |
| ATGGCTGAAAATAACCAAGC+AGG | 0.574550 | 5.2:+76783611 | MS.gene48017:CDS |
| TTGAGATGATACAAAACTCA+AGG | 0.576016 | 5.2:-76780806 | None:intergenic |
| GGAATCAACACCAGATGCAA+TGG | 0.582737 | 5.2:+76782243 | MS.gene48017:CDS |
| AGCAGTTTGTCCATCAAGAG+TGG | 0.589661 | 5.2:-76782572 | None:intergenic |
| ACTTAAAGATGAGGTGCAGA+AGG | 0.589892 | 5.2:+76783574 | MS.gene48017:CDS |
| CAACAATGAACATGTGGCAA+TGG | 0.591956 | 5.2:+76780873 | MS.gene48017:CDS |
| TGACGATTTACACATGAGAC+TGG | 0.593091 | 5.2:+76782756 | MS.gene48017:CDS |
| CAATTTGTCAGAGATTGACG+AGG | 0.597048 | 5.2:+76782599 | MS.gene48017:CDS |
| TAGGCTGTTCTTTCCTGCGG+AGG | 0.599150 | 5.2:+76783145 | MS.gene48017:CDS |
| GCAAGTTCAACAGCTTTGAA+GGG | 0.599785 | 5.2:+76783215 | MS.gene48017:CDS |
| ACACATGTTGTCACTTCTGT+TGG | 0.603901 | 5.2:-76781207 | None:intergenic |
| ATTTCAGTCATAACTTCATG+AGG | 0.607057 | 5.2:-76782193 | None:intergenic |
| CCGGCAGAGGTTGGACTCGG+AGG | 0.609492 | 5.2:-76782222 | None:intergenic |
| GAGAGTCGTAAGGTCTGACA+TGG | 0.616876 | 5.2:+76782144 | MS.gene48017:CDS |
| CTCAACCAACAATGAACATG+TGG | 0.620410 | 5.2:+76780867 | MS.gene48017:CDS |
| TAAGAATCCTCGTGGATACA+CGG | 0.628927 | 5.2:+76782471 | MS.gene48017:CDS |
| ACAAGCATAGTGTAGTGCAT+AGG | 0.635531 | 5.2:-76782386 | None:intergenic |
| GTTCATGGAACTTAAAGATG+AGG | 0.636671 | 5.2:+76783565 | MS.gene48017:CDS |
| AAAGTCTTAACCACAAAGTG+AGG | 0.653570 | 5.2:+76783678 | MS.gene48017:CDS |
| GCAGGGGAAGGAGTCTCACA+AGG | 0.661433 | 5.2:+76782648 | MS.gene48017:CDS |
| ATTGCATTCAGAGAGTCGTA+AGG | 0.666386 | 5.2:+76782134 | MS.gene48017:CDS |
| GGTGCAGAAGGCATTTCACA+AGG | 0.668394 | 5.2:+76783586 | MS.gene48017:CDS |
| ATTCTCCTTAAGAATCCTCG+TGG | 0.687759 | 5.2:+76782463 | MS.gene48017:CDS |
| GTGAGTTTGAATAAGCTCAG+TGG | 0.700757 | 5.2:+76780910 | MS.gene48017:CDS |
| GCTGTTGAACTTGCATAGCG+TGG | 0.711386 | 5.2:-76783206 | None:intergenic |
| GGTAGCCATAGAGAATGCTG+GGG | 0.739957 | 5.2:+76783172 | MS.gene48017:CDS |
| TGAAGAACCGTGTATCCACG+AGG | 0.741022 | 5.2:-76782478 | None:intergenic |
| TCAAGCACCTCAGAACAATG+CGG | 0.766562 | 5.2:-76783461 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGAGCAATAAAAATAA+AGG | - | chr5.2:76781387-76781406 | None:intergenic | 15.0% |
| !!! | AAAGTTTCATGAAAATATTT+TGG | - | chr5.2:76783062-76783081 | None:intergenic | 15.0% |
| !!! | ATTTTATTTATACATTTTGC+AGG | + | chr5.2:76781705-76781724 | MS.gene48017:intron | 15.0% |
| !!! | TATTTCAAATTTTATTCACT+TGG | - | chr5.2:76781763-76781782 | None:intergenic | 15.0% |
| !! | AAAGGATTATCATGAAAAAA+CGG | + | chr5.2:76782624-76782643 | MS.gene48017:CDS | 20.0% |
| !!! | AATACTTAATGAATTGATTC+TGG | - | chr5.2:76782980-76782999 | None:intergenic | 20.0% |
| !!! | AATATTTTACGTAGTTTTGT+AGG | - | chr5.2:76781629-76781648 | None:intergenic | 20.0% |
| !!! | TTTCATGAAACTTTTGAATT+TGG | + | chr5.2:76783068-76783087 | MS.gene48017:intron | 20.0% |
| !!! | TTTCATGAACTTTTTAAGAA+AGG | + | chr5.2:76781048-76781067 | MS.gene48017:intron | 20.0% |
| ! | AATTTCTTCAACAAGAATCT+CGG | - | chr5.2:76780983-76781002 | None:intergenic | 25.0% |
| ! | ACATTAGCTCATTTCAAAAA+AGG | - | chr5.2:76781995-76782014 | None:intergenic | 25.0% |
| ! | AGCAATAAAAATAAAGGAGA+AGG | - | chr5.2:76781381-76781400 | None:intergenic | 25.0% |
| ! | AGCACATCAAATTTATATGA+AGG | - | chr5.2:76781815-76781834 | None:intergenic | 25.0% |
| ! | ATATAAATTTGATGTGCTGA+CGG | + | chr5.2:76781817-76781836 | MS.gene48017:intron | 25.0% |
| ! | ATCTTTATACGAACATCAAA+TGG | + | chr5.2:76783374-76783393 | MS.gene48017:intron | 25.0% |
| ! | GAAAATTATAGTATCAAGTC+TGG | - | chr5.2:76781907-76781926 | None:intergenic | 25.0% |
| ! | TCAACTGTACACAATTTAAT+TGG | - | chr5.2:76783422-76783441 | None:intergenic | 25.0% |
| ! | TTCTTGCATTATTTGTATAC+TGG | + | chr5.2:76781168-76781187 | MS.gene48017:CDS | 25.0% |
| ! | TTGAATTTGGAAGCTTATTA+TGG | + | chr5.2:76783081-76783100 | MS.gene48017:intron | 25.0% |
| ! | TTTGTATACTGGAAAGTTAA+AGG | + | chr5.2:76781179-76781198 | MS.gene48017:CDS | 25.0% |
| !! | AGATGTCATTCCAATTTTAA+TGG | + | chr5.2:76782075-76782094 | MS.gene48017:CDS | 25.0% |
| !! | AGCTTAGGATTTACATTTTA+CGG | - | chr5.2:76781463-76781482 | None:intergenic | 25.0% |
| !! | TTTATACATTTTGCAGGTTT+TGG | + | chr5.2:76781711-76781730 | MS.gene48017:intron | 25.0% |
| !!! | CTCAAGTTTTTTTTTTCTTC+CGG | - | chr5.2:76781972-76781991 | None:intergenic | 25.0% |
| !!! | CTTTTTAAGAAAGGAAAAGA+TGG | + | chr5.2:76781057-76781076 | MS.gene48017:intron | 25.0% |
| !!! | GTATGTTTACTTTTGATCTA+GGG | + | chr5.2:76781584-76781603 | MS.gene48017:intron | 25.0% |
| !!! | TTCATGAAAATATTTTGGTG+AGG | - | chr5.2:76783057-76783076 | None:intergenic | 25.0% |
| AAATCTTTCATGAGATACCT+TGG | - | chr5.2:76781108-76781127 | None:intergenic | 30.0% | |
| AAATTGTGTACAGTTGAGAA+TGG | + | chr5.2:76783425-76783444 | MS.gene48017:intron | 30.0% | |
| ACTGTACACAATTTAATTGG+AGG | - | chr5.2:76783419-76783438 | None:intergenic | 30.0% | |
| ATTTCAGTCATAACTTCATG+AGG | - | chr5.2:76782196-76782215 | None:intergenic | 30.0% | |
| CAAGGGATTGTAATCTTAAT+TGG | - | chr5.2:76783295-76783314 | None:intergenic | 30.0% | |
| CCTAAGCTTGAATATTAGAA+AGG | + | chr5.2:76781475-76781494 | MS.gene48017:intron | 30.0% | |
| CCTTTCTAATATTCAAGCTT+AGG | - | chr5.2:76781478-76781497 | None:intergenic | 30.0% | |
| TGACATGGACATCATATATT+TGG | + | chr5.2:76782159-76782178 | MS.gene48017:CDS | 30.0% | |
| TGGTATTCATCGTTGTATAT+TGG | + | chr5.2:76781008-76781027 | MS.gene48017:intron | 30.0% | |
| TTACAATCCCTTGTAAAAAC+AGG | + | chr5.2:76783302-76783321 | MS.gene48017:CDS | 30.0% | |
| TTGAGATGATACAAAACTCA+AGG | - | chr5.2:76780809-76780828 | None:intergenic | 30.0% | |
| TTGGTTGCACTATTGAAAAA+CGG | + | chr5.2:76782532-76782551 | MS.gene48017:CDS | 30.0% | |
| TTGTGCATATTGTGATTCTA+AGG | + | chr5.2:76782405-76782424 | MS.gene48017:CDS | 30.0% | |
| ! | AAGGTATCTCATGAAAGATT+TGG | + | chr5.2:76781107-76781126 | MS.gene48017:intron | 30.0% |
| ! | AGTTTTCTTGTTCTAACAGA+AGG | - | chr5.2:76783272-76783291 | None:intergenic | 30.0% |
| ! | ATATCTTTTTACTGATGCAG+AGG | + | chr5.2:76782017-76782036 | MS.gene48017:intron | 30.0% |
| ! | GTTACTGAATCTTCTTTTAG+AGG | + | chr5.2:76782339-76782358 | MS.gene48017:CDS | 30.0% |
| ! | TATTAGTCTAAGCTAAGCTT+TGG | - | chr5.2:76781668-76781687 | None:intergenic | 30.0% |
| ! | TCTCCTAAATTTTGTTGACA+AGG | + | chr5.2:76782042-76782061 | MS.gene48017:CDS | 30.0% |
| ! | TTCTTTTCCTTTGTGCTATA+TGG | + | chr5.2:76781940-76781959 | MS.gene48017:intron | 30.0% |
| !! | CGTATGTTTACTTTTGATCT+AGG | + | chr5.2:76781583-76781602 | MS.gene48017:intron | 30.0% |
| !! | GTCACTTGCTATTATACTTT+AGG | + | chr5.2:76783008-76783027 | MS.gene48017:intron | 30.0% |
| !!! | GATCATACCTGTTTTTACAA+GGG | - | chr5.2:76783312-76783331 | None:intergenic | 30.0% |
| !!! | TGATCATACCTGTTTTTACA+AGG | - | chr5.2:76783313-76783332 | None:intergenic | 30.0% |
| AAAGATGGAGAAGTTAAGGA+AGG | + | chr5.2:76781072-76781091 | MS.gene48017:intron | 35.0% | |
| AAAGTCTTAACCACAAAGTG+AGG | + | chr5.2:76783678-76783697 | MS.gene48017:CDS | 35.0% | |
| AAGCTCTTTCATCTGAAAAG+TGG | - | chr5.2:76781304-76781323 | None:intergenic | 35.0% | |
| AAGTTCTATGTCAGTGAACA+TGG | + | chr5.2:76782711-76782730 | MS.gene48017:CDS | 35.0% | |
| ACTAATAAGCAACAGCAGAT+TGG | + | chr5.2:76781681-76781700 | MS.gene48017:intron | 35.0% | |
| AGAAGTTCTTACTCTTGGAT+TGG | + | chr5.2:76782435-76782454 | MS.gene48017:CDS | 35.0% | |
| AGGAAAAGATGGAGAAGTTA+AGG | + | chr5.2:76781068-76781087 | MS.gene48017:intron | 35.0% | |
| ATACAACGATGAATACCAAC+AGG | - | chr5.2:76781006-76781025 | None:intergenic | 35.0% | |
| ATATCTAGACGATGATATGC+CGG | + | chr5.2:76783487-76783506 | MS.gene48017:CDS | 35.0% | |
| ATGCCTTTAGATGATTCTAG+AGG | + | chr5.2:76782832-76782851 | MS.gene48017:intron | 35.0% | |
| ATTCACTTGGAACATAGATG+AGG | - | chr5.2:76781750-76781769 | None:intergenic | 35.0% | |
| CATCACTCAATAACTTCTCA+AGG | - | chr5.2:76780939-76780958 | None:intergenic | 35.0% | |
| CTGGATTACCTTGAAAATAG+AGG | + | chr5.2:76782775-76782794 | MS.gene48017:CDS | 35.0% | |
| CTTGTTGAAGAAATTCCTGT+TGG | + | chr5.2:76780988-76781007 | MS.gene48017:CDS | 35.0% | |
| GGTAGACAAACATGCTTATT+AGG | - | chr5.2:76781794-76781813 | None:intergenic | 35.0% | |
| GTTCAAGAAGTTCTTACTCT+TGG | + | chr5.2:76782430-76782449 | MS.gene48017:CDS | 35.0% | |
| GTTCATGGAACTTAAAGATG+AGG | + | chr5.2:76783565-76783584 | MS.gene48017:CDS | 35.0% | |
| TATCATGAAAAAACGGTGCA+GGG | + | chr5.2:76782631-76782650 | MS.gene48017:CDS | 35.0% | |
| TCATATCCAACACTACCATA+AGG | - | chr5.2:76781135-76781154 | None:intergenic | 35.0% | |
| TCCTTTGTGCTATATGGAAT+AGG | + | chr5.2:76781946-76781965 | MS.gene48017:intron | 35.0% | |
| TGATGTGCAGCCATTAAAAT+TGG | - | chr5.2:76782088-76782107 | None:intergenic | 35.0% | |
| TGCATTGTCTTCTACATCAT+CGG | + | chr5.2:76783643-76783662 | MS.gene48017:CDS | 35.0% | |
| TTACGGTCCATTTCACAATA+TGG | - | chr5.2:76781446-76781465 | None:intergenic | 35.0% | |
| TTATCATGAAAAAACGGTGC+AGG | + | chr5.2:76782630-76782649 | MS.gene48017:CDS | 35.0% | |
| TTTCAATAGTGCAACCAAGA+TGG | - | chr5.2:76782530-76782549 | None:intergenic | 35.0% | |
| ! | GACAAGTACCTCTATTTTCA+AGG | - | chr5.2:76782786-76782805 | None:intergenic | 35.0% |
| ! | GAGCCTTGTCAACAAAATTT+AGG | - | chr5.2:76782048-76782067 | None:intergenic | 35.0% |
| ! | TCCAAAGCAAAATTGATAGC+AGG | - | chr5.2:76781264-76781283 | None:intergenic | 35.0% |
| ! | TCCTGCTATCAATTTTGCTT+TGG | + | chr5.2:76781260-76781279 | MS.gene48017:CDS | 35.0% |
| !! | ACACCTCTAGAATCATCTAA+AGG | - | chr5.2:76782838-76782857 | None:intergenic | 35.0% |
| !! | ATGAAAGATTTGGTGCCTTA+TGG | + | chr5.2:76781117-76781136 | MS.gene48017:intron | 35.0% |
| !! | GATGTTTTTGTCCTAGAGAA+GGG | + | chr5.2:76783509-76783528 | MS.gene48017:CDS | 35.0% |
| !! | TTCTCTAGGACAAAAACATC+CGG | - | chr5.2:76783509-76783528 | None:intergenic | 35.0% |
| !!! | AGAGCTTGCTTTAGTTTTTC+AGG | + | chr5.2:76781317-76781336 | MS.gene48017:CDS | 35.0% |
| AATAGTGCAACCAAGATGGA+TGG | - | chr5.2:76782526-76782545 | None:intergenic | 40.0% | |
| ACAAGCATAGTGTAGTGCAT+AGG | - | chr5.2:76782389-76782408 | None:intergenic | 40.0% | |
| ACTTAAAGATGAGGTGCAGA+AGG | + | chr5.2:76783574-76783593 | MS.gene48017:CDS | 40.0% | |
| AGAATTCAGCCAAAATGCCT+AGG | - | chr5.2:76781527-76781546 | None:intergenic | 40.0% | |
| AGAGCAAATCTGACAAGTTC+AGG | + | chr5.2:76781418-76781437 | MS.gene48017:intron | 40.0% | |
| ATCATGAAAAAACGGTGCAG+GGG | + | chr5.2:76782632-76782651 | MS.gene48017:CDS | 40.0% | |
| ATGCAGATGAAAAACCTGCT+TGG | - | chr5.2:76783628-76783647 | None:intergenic | 40.0% | |
| ATGGCTGAAAATAACCAAGC+AGG | + | chr5.2:76783611-76783630 | MS.gene48017:CDS | 40.0% | |
| ATGTTGCAGTTGCATTTGCT+AGG | + | chr5.2:76783126-76783145 | MS.gene48017:intron | 40.0% | |
| ATTCTCCTTAAGAATCCTCG+TGG | + | chr5.2:76782463-76782482 | MS.gene48017:CDS | 40.0% | |
| ATTGCATTCAGAGAGTCGTA+AGG | + | chr5.2:76782134-76782153 | MS.gene48017:CDS | 40.0% | |
| CAACAATGAACATGTGGCAA+TGG | + | chr5.2:76780873-76780892 | MS.gene48017:CDS | 40.0% | |
| CAATTTGTCAGAGATTGACG+AGG | + | chr5.2:76782599-76782618 | MS.gene48017:CDS | 40.0% | |
| CAGGAAAATCCTTAAGGCAT+TGG | + | chr5.2:76782300-76782319 | MS.gene48017:CDS | 40.0% | |
| CATTGCCACATGTTCATTGT+TGG | - | chr5.2:76780875-76780894 | None:intergenic | 40.0% | |
| CCAACACAGGAAAACAGATT+TGG | - | chr5.2:76781875-76781894 | None:intergenic | 40.0% | |
| CTCAACCAACAATGAACATG+TGG | + | chr5.2:76780867-76780886 | MS.gene48017:CDS | 40.0% | |
| CTCTTATCATTCACAGTCAC+AGG | - | chr5.2:76782277-76782296 | None:intergenic | 40.0% | |
| CTGGATAAATACACCAACAC+AGG | - | chr5.2:76781888-76781907 | None:intergenic | 40.0% | |
| GAGCAAATCTGACAAGTTCA+GGG | + | chr5.2:76781419-76781438 | MS.gene48017:intron | 40.0% | |
| GAGTGTCAGGAAAATCCTTA+AGG | + | chr5.2:76782294-76782313 | MS.gene48017:CDS | 40.0% | |
| GCACAAGAAAATGACGCTTA+AGG | - | chr5.2:76781359-76781378 | None:intergenic | 40.0% | |
| GCCTATTCCATATAGCACAA+AGG | - | chr5.2:76781950-76781969 | None:intergenic | 40.0% | |
| GGAGAAGTTAAGGAAGGAAA+GGG | + | chr5.2:76781078-76781097 | MS.gene48017:intron | 40.0% | |
| GTGAGTTTGAATAAGCTCAG+TGG | + | chr5.2:76780910-76780929 | MS.gene48017:CDS | 40.0% | |
| TAAGAATCCTCGTGGATACA+CGG | + | chr5.2:76782471-76782490 | MS.gene48017:CDS | 40.0% | |
| TCAGGGTCCATATTGTGAAA+TGG | + | chr5.2:76781436-76781455 | MS.gene48017:intron | 40.0% | |
| TGACGATTTACACATGAGAC+TGG | + | chr5.2:76782756-76782775 | MS.gene48017:CDS | 40.0% | |
| TGAGGTTCTTATGTGTGGAT+TGG | - | chr5.2:76783039-76783058 | None:intergenic | 40.0% | |
| TGGAGAAGTTAAGGAAGGAA+AGG | + | chr5.2:76781077-76781096 | MS.gene48017:intron | 40.0% | |
| TGTATCCACGAGGATTCTTA+AGG | - | chr5.2:76782471-76782490 | None:intergenic | 40.0% | |
| TGTGTACAGTTGAGAATGGT+AGG | + | chr5.2:76783429-76783448 | MS.gene48017:intron | 40.0% | |
| TTGTGCTATATGGAATAGGC+CGG | + | chr5.2:76781950-76781969 | MS.gene48017:intron | 40.0% | |
| TTTGGTGAGGTTCTTATGTG+TGG | - | chr5.2:76783044-76783063 | None:intergenic | 40.0% | |
| ! | ACACATGTTGTCACTTCTGT+TGG | - | chr5.2:76781210-76781229 | None:intergenic | 40.0% |
| ! | CACATGTTCATTGTTGGTTG+AGG | - | chr5.2:76780869-76780888 | None:intergenic | 40.0% |
| ! | CCAAATCTGTTTTCCTGTGT+TGG | + | chr5.2:76781872-76781891 | MS.gene48017:intron | 40.0% |
| ! | TGCAAGTTCAACAGCTTTGA+AGG | + | chr5.2:76783214-76783233 | MS.gene48017:CDS | 40.0% |
| ! | TTTTGTCCTAGAGAAGGGAA+CGG | + | chr5.2:76783514-76783533 | MS.gene48017:CDS | 40.0% |
| !! | ATTGCATCTGGTGTTGATTC+CGG | - | chr5.2:76782244-76782263 | None:intergenic | 40.0% |
| !! | CTGTGAATGATAAGAGTGTC+AGG | + | chr5.2:76782281-76782300 | MS.gene48017:CDS | 40.0% |
| !! | GAAGGCATTTCACAAGGATA+TGG | + | chr5.2:76783592-76783611 | MS.gene48017:CDS | 40.0% |
| !! | GCAAGTTCAACAGCTTTGAA+GGG | + | chr5.2:76783215-76783234 | MS.gene48017:CDS | 40.0% |
| !! | GGATGTTTTTGTCCTAGAGA+AGG | + | chr5.2:76783508-76783527 | MS.gene48017:CDS | 40.0% |
| !!! | CTTTTTTCCGCATTGTTCTG+AGG | + | chr5.2:76783454-76783473 | MS.gene48017:CDS | 40.0% |
| AACACCAGATGCAATGGAAG+TGG | + | chr5.2:76782249-76782268 | MS.gene48017:CDS | 45.0% | |
| ACGAAAGGATCCATCCATCT+TGG | + | chr5.2:76782513-76782532 | MS.gene48017:CDS | 45.0% | |
| AGCAGAGAACGAAGAAAGCA+CGG | + | chr5.2:76783543-76783562 | MS.gene48017:CDS | 45.0% | |
| AGCAGTTTGTCCATCAAGAG+TGG | - | chr5.2:76782575-76782594 | None:intergenic | 45.0% | |
| GAATGCAATGAGAGAGAAGC+TGG | - | chr5.2:76782123-76782142 | None:intergenic | 45.0% | |
| GCATCAGAAACCACTCTTGA+TGG | + | chr5.2:76782562-76782581 | MS.gene48017:CDS | 45.0% | |
| GGAATCAACACCAGATGCAA+TGG | + | chr5.2:76782243-76782262 | MS.gene48017:CDS | 45.0% | |
| TACATCATCGGCAAGTCGTA+GGG | + | chr5.2:76783655-76783674 | MS.gene48017:CDS | 45.0% | |
| TCAAGCACCTCAGAACAATG+CGG | - | chr5.2:76783464-76783483 | None:intergenic | 45.0% | |
| ! | AACGAAGAAAGCACGGTTCA+TGG | + | chr5.2:76783550-76783569 | MS.gene48017:CDS | 45.0% |
| ! | CATGTTGTCACTTCTGTTGG+TGG | - | chr5.2:76781207-76781226 | None:intergenic | 45.0% |
| ! | TTGGTGCCTTATGGTAGTGT+TGG | + | chr5.2:76781126-76781145 | MS.gene48017:CDS | 45.0% |
| AGGAAGGAAAGGGAAAGCCA+AGG | + | chr5.2:76781088-76781107 | MS.gene48017:intron | 50.0% | |
| AGGGTAGCCATAGAGAATGC+TGG | + | chr5.2:76783170-76783189 | MS.gene48017:CDS | 50.0% | |
| ATCTGCCCCAGCATTCTCTA+TGG | - | chr5.2:76783180-76783199 | None:intergenic | 50.0% | |
| ATGCATGAGATGGTGACTGC+AGG | + | chr5.2:76781845-76781864 | MS.gene48017:intron | 50.0% | |
| CGTCAGAGTCCAATGCCTTA+AGG | - | chr5.2:76782312-76782331 | None:intergenic | 50.0% | |
| CTACATCATCGGCAAGTCGT+AGG | + | chr5.2:76783654-76783673 | MS.gene48017:CDS | 50.0% | |
| CTTCTTCCGTTCCCTTCTCT+AGG | - | chr5.2:76783523-76783542 | None:intergenic | 50.0% | |
| GAGAGTCGTAAGGTCTGACA+TGG | + | chr5.2:76782144-76782163 | MS.gene48017:CDS | 50.0% | |
| GCTGTTGAACTTGCATAGCG+TGG | - | chr5.2:76783209-76783228 | None:intergenic | 50.0% | |
| GGAAGGAGTCTCACAAGGAT+AGG | + | chr5.2:76782653-76782672 | MS.gene48017:CDS | 50.0% | |
| GGATGGATCCTTTCGTCTTG+CGG | - | chr5.2:76782509-76782528 | None:intergenic | 50.0% | |
| GGGTAGCCATAGAGAATGCT+GGG | + | chr5.2:76783171-76783190 | MS.gene48017:CDS | 50.0% | |
| GGTAGCCATAGAGAATGCTG+GGG | + | chr5.2:76783172-76783191 | MS.gene48017:CDS | 50.0% | |
| GGTTCCACTTCCATTGCATC+TGG | - | chr5.2:76782256-76782275 | None:intergenic | 50.0% | |
| TCAGAGATTGACGAGGCGAA+AGG | + | chr5.2:76782606-76782625 | MS.gene48017:CDS | 50.0% | |
| TGAAAAAACGGTGCAGGGGA+AGG | + | chr5.2:76782636-76782655 | MS.gene48017:CDS | 50.0% | |
| TGAAGAACCGTGTATCCACG+AGG | - | chr5.2:76782481-76782500 | None:intergenic | 50.0% | |
| TGCTAGGCTGTTCTTTCCTG+CGG | + | chr5.2:76783142-76783161 | MS.gene48017:CDS | 50.0% | |
| ! | AGTCGGAGACCTAGGCATTT+TGG | + | chr5.2:76781515-76781534 | MS.gene48017:intron | 50.0% |
| !! | GGTGCAGAAGGCATTTCACA+AGG | + | chr5.2:76783586-76783605 | MS.gene48017:CDS | 50.0% |
| ATTCCGGCAGAGGTTGGACT+CGG | - | chr5.2:76782228-76782247 | None:intergenic | 55.0% | |
| GACGGCGTGAATGCATGAGA+TGG | + | chr5.2:76781835-76781854 | MS.gene48017:intron | 55.0% | |
| GTTCTTTCCTGCGGAGGCAA+GGG | + | chr5.2:76783151-76783170 | MS.gene48017:CDS | 55.0% | |
| TAGGCTGTTCTTTCCTGCGG+AGG | + | chr5.2:76783145-76783164 | MS.gene48017:CDS | 55.0% | |
| TCACGTTGCCGCAAGACGAA+AGG | + | chr5.2:76782498-76782517 | MS.gene48017:CDS | 55.0% | |
| TGTTCTTTCCTGCGGAGGCA+AGG | + | chr5.2:76783150-76783169 | MS.gene48017:CDS | 55.0% | |
| !! | GTGTTGATTCCGGCAGAGGT+TGG | - | chr5.2:76782234-76782253 | None:intergenic | 55.0% |
| !! | TCTGGTGTTGATTCCGGCAG+AGG | - | chr5.2:76782238-76782257 | None:intergenic | 55.0% |
| CTAGGTCTCCGACTGCAGAG+CGG | - | chr5.2:76781509-76781528 | None:intergenic | 60.0% | |
| GCAGGGGAAGGAGTCTCACA+AGG | + | chr5.2:76782648-76782667 | MS.gene48017:CDS | 60.0% | |
| TACTGCAGCCGCTCTGCAGT+CGG | + | chr5.2:76781498-76781517 | MS.gene48017:intron | 60.0% | |
| ATGGCTACCCTTGCCTCCGC+AGG | - | chr5.2:76783161-76783180 | None:intergenic | 65.0% | |
| CCTCCGAGTCCAACCTCTGC+CGG | + | chr5.2:76782222-76782241 | MS.gene48017:CDS | 65.0% | |
| CGCTCTGCAGTCGGAGACCT+AGG | + | chr5.2:76781507-76781526 | MS.gene48017:intron | 65.0% | |
| CGGCAGAGGTTGGACTCGGA+GGG | - | chr5.2:76782224-76782243 | None:intergenic | 65.0% | |
| CCGGCAGAGGTTGGACTCGG+AGG | - | chr5.2:76782225-76782244 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 76780775 | 76783709 | 76780775 | ID=MS.gene48017 |
| chr5.2 | mRNA | 76780775 | 76783709 | 76780775 | ID=MS.gene48017.t1;Parent=MS.gene48017 |
| chr5.2 | exon | 76780775 | 76781009 | 76780775 | ID=MS.gene48017.t1.exon1;Parent=MS.gene48017.t1 |
| chr5.2 | CDS | 76780775 | 76781009 | 76780775 | ID=cds.MS.gene48017.t1;Parent=MS.gene48017.t1 |
| chr5.2 | exon | 76781124 | 76781338 | 76781124 | ID=MS.gene48017.t1.exon2;Parent=MS.gene48017.t1 |
| chr5.2 | CDS | 76781124 | 76781338 | 76781124 | ID=cds.MS.gene48017.t1;Parent=MS.gene48017.t1 |
| chr5.2 | exon | 76782037 | 76782796 | 76782037 | ID=MS.gene48017.t1.exon3;Parent=MS.gene48017.t1 |
| chr5.2 | CDS | 76782037 | 76782796 | 76782037 | ID=cds.MS.gene48017.t1;Parent=MS.gene48017.t1 |
| chr5.2 | exon | 76783135 | 76783323 | 76783135 | ID=MS.gene48017.t1.exon4;Parent=MS.gene48017.t1 |
| chr5.2 | CDS | 76783135 | 76783323 | 76783135 | ID=cds.MS.gene48017.t1;Parent=MS.gene48017.t1 |
| chr5.2 | exon | 76783438 | 76783709 | 76783438 | ID=MS.gene48017.t1.exon5;Parent=MS.gene48017.t1 |
| chr5.2 | CDS | 76783438 | 76783709 | 76783438 | ID=cds.MS.gene48017.t1;Parent=MS.gene48017.t1 |
| Gene Sequence |
| Protein sequence |
