AlfalfaGEDB | MS.gene48487

M. sativa cultivar XinJiangDaYe / MS.gene48487

KEGG: -
GO: GO:0003674 GO:0003824 GO:0016787
PFAM: PF07859.16

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48487.t1	XP_003603016.1	95.6	316	14	0	1	316	1	316	2.10E-178	634.8

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48487.t1	Q9SX78	54.7	320	132	5	1	316	1	311	5.3e-101	369.0

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48487.t1	G7J6B0	95.6	316	14	0	1	316	1	316	1.5e-178	634.8

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene054628	MS.gene48487	0.974014	2.05E-137	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene48487	MS.gene26528	PPI
MS.gene26526	MS.gene48487	PPI
MS.gene053470	MS.gene48487	PPI
MS.gene48487	MS.gene047802	PPI
MS.gene23692	MS.gene48487	PPI
MS.gene48487	MS.gene053480	PPI
MS.gene053479	MS.gene48487	PPI
MS.gene39628	MS.gene48487	PPI
MS.gene48487	MS.gene047804	PPI
MS.gene48487	MS.gene051696	PPI
MS.gene047803	MS.gene48487	PPI
MS.gene39627	MS.gene48487	PPI
MS.gene022960	MS.gene48487	PPI
MS.gene26527	MS.gene48487	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48487.t1	MTR_3g101420	95.570	316	14	0	1	316	1	316	0.0	620
MS.gene48487.t1	MTR_4g086510	43.077	325	170	7	1	316	1	319	2.64e-93	280
MS.gene48487.t1	MTR_4g086480	42.901	324	169	5	1	314	1	318	2.44e-91	275
MS.gene48487.t1	MTR_5g005850	42.812	320	174	6	4	314	9	328	6.51e-90	271
MS.gene48487.t1	MTR_7g056207	42.405	316	168	6	8	315	41	350	2.92e-88	268
MS.gene48487.t1	MTR_4g086540	44.373	311	144	5	8	314	19	304	1.09e-85	260
MS.gene48487.t1	MTR_4g086470	43.590	312	165	4	10	316	14	319	9.00e-85	258
MS.gene48487.t1	MTR_1g105020	40.446	314	176	5	10	314	11	322	2.50e-82	252
MS.gene48487.t1	MTR_3g450680	40.379	317	181	5	8	316	17	333	3.61e-79	244
MS.gene48487.t1	MTR_1g104930	43.963	323	168	7	2	316	7	324	1.06e-73	230
MS.gene48487.t1	MTR_5g005920	37.383	321	187	6	8	316	14	332	4.76e-73	228
MS.gene48487.t1	MTR_8g040860	39.806	309	177	5	15	316	24	330	2.34e-70	221
MS.gene48487.t1	MTR_7g051020	40.923	325	178	7	2	316	7	327	2.11e-69	219
MS.gene48487.t1	MTR_5g005900	38.154	325	189	7	3	316	5	328	4.64e-67	213
MS.gene48487.t1	MTR_1g104933	42.222	315	169	7	8	316	11	318	4.14e-64	205
MS.gene48487.t1	MTR_1g012430	35.443	316	187	6	8	316	4	309	1.34e-53	178
MS.gene48487.t1	MTR_1g111280	35.647	317	180	7	8	312	27	331	1.46e-53	179
MS.gene48487.t1	MTR_7g406880	34.347	329	183	10	15	316	29	351	6.10e-51	172
MS.gene48487.t1	MTR_4g050140	32.372	312	194	6	15	316	13	317	1.49e-47	162
MS.gene48487.t1	MTR_7g107040	31.715	309	197	5	14	314	14	316	3.37e-44	154
MS.gene48487.t1	MTR_6g464120	35.094	265	150	6	15	265	24	280	3.17e-41	150
MS.gene48487.t1	MTR_8g035520	31.629	313	196	8	15	316	21	326	9.99e-40	142
MS.gene48487.t1	MTR_8g035540	31.429	315	194	9	15	314	9	316	1.06e-39	142
MS.gene48487.t1	MTR_1g102160	32.509	283	160	9	15	276	19	291	2.71e-39	141
MS.gene48487.t1	MTR_1g102170	34.483	261	148	7	20	266	43	294	2.28e-38	139
MS.gene48487.t1	MTR_6g464510	33.439	314	177	9	20	315	28	327	5.07e-38	137
MS.gene48487.t1	MTR_6g065270	32.131	305	171	9	34	316	47	337	1.50e-37	137
MS.gene48487.t1	MTR_0007s0520	31.661	319	184	9	17	316	23	326	1.56e-37	136
MS.gene48487.t1	MTR_1g082210	32.530	249	138	5	32	261	53	290	9.23e-36	132
MS.gene48487.t1	MTR_6g065400	31.000	300	177	7	34	316	49	335	2.05e-35	131
MS.gene48487.t1	MTR_6g065370	31.333	300	176	7	34	316	49	335	2.83e-35	130
MS.gene48487.t1	MTR_3g012440	29.499	339	201	10	10	316	10	342	2.42e-33	125
MS.gene48487.t1	MTR_1g089310	30.323	310	171	9	20	297	38	334	4.89e-33	125
MS.gene48487.t1	MTR_1g089310	32.389	247	141	6	65	297	116	350	5.97e-33	125
MS.gene48487.t1	MTR_6g065110	31.525	295	172	7	38	315	54	335	1.08e-32	124
MS.gene48487.t1	MTR_6g464320	30.503	318	187	10	18	315	23	326	1.35e-32	123
MS.gene48487.t1	MTR_6g464280	30.909	330	180	10	14	315	16	325	6.18e-32	121
MS.gene48487.t1	MTR_6g065340	30.068	296	169	7	34	316	60	330	2.10e-31	120
MS.gene48487.t1	MTR_6g065120	29.900	301	180	8	34	316	50	337	2.00e-30	118
MS.gene48487.t1	MTR_8g035500	29.537	281	170	8	15	276	12	283	4.99e-30	116
MS.gene48487.t1	MTR_7g093950	31.290	310	172	12	32	315	53	347	1.52e-29	115
MS.gene48487.t1	MTR_6g065430	28.956	297	182	8	32	314	46	327	2.41e-26	106
MS.gene48487.t1	MTR_6g022710	28.049	246	138	9	63	272	153	395	2.55e-18	85.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48487.t1	AT1G47480	54.688	320	132	5	1	316	1	311	1.63e-125	362
MS.gene48487.t1	AT3G48690	41.009	317	171	5	10	314	8	320	8.62e-82	251
MS.gene48487.t1	AT3G48700	41.379	319	166	6	13	314	11	325	4.69e-81	249
MS.gene48487.t1	AT2G03550	41.214	313	172	6	9	316	7	312	1.40e-80	247
MS.gene48487.t1	AT1G49650	42.173	313	167	6	12	315	66	373	5.11e-80	248
MS.gene48487.t1	AT1G49640	41.667	312	162	7	13	314	12	313	2.73e-76	236
MS.gene48487.t1	AT1G19190	39.308	318	174	6	9	316	7	315	4.29e-75	233
MS.gene48487.t1	AT1G49660	41.587	315	169	6	10	314	8	317	1.18e-74	232
MS.gene48487.t1	AT5G16080	33.333	327	186	10	8	315	29	342	4.51e-48	164
MS.gene48487.t1	AT1G68620	35.117	299	166	8	10	296	26	308	7.02e-48	164
MS.gene48487.t1	AT5G06570	32.051	312	198	6	15	315	18	326	3.12e-39	141
MS.gene48487.t1	AT5G06570	32.051	312	198	6	15	315	18	326	3.12e-39	141
MS.gene48487.t1	AT5G06570	32.051	312	198	6	15	315	33	341	4.51e-39	141
MS.gene48487.t1	AT5G06570	32.051	312	198	6	15	315	33	341	4.51e-39	141
MS.gene48487.t1	AT3G05120	30.094	319	186	7	20	315	38	342	2.88e-38	139
MS.gene48487.t1	AT5G27320	29.968	317	187	7	20	315	38	340	1.20e-37	137
MS.gene48487.t1	AT2G45600	31.447	318	182	11	15	314	16	315	1.38e-35	131
MS.gene48487.t1	AT3G63010	30.035	283	170	6	36	302	69	339	1.70e-35	132
MS.gene48487.t1	AT2G45610	28.797	316	202	9	15	315	17	324	6.65e-34	127
MS.gene48487.t1	AT5G23530	31.438	299	171	9	32	316	50	328	9.33e-32	121
MS.gene48487.t1	AT5G62180	31.773	299	173	8	34	314	38	323	1.69e-31	120
MS.gene48487.t1	AT3G27320	28.794	257	138	10	58	272	120	373	1.62e-18	85.9
MS.gene48487.t1	AT3G27320	28.794	257	138	10	58	272	152	405	1.94e-18	85.9

Find 77 sgRNAs with CRISPR-Local

Find 90 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TAATTTCAATTTCAAGATTT+TGG	0.035715	3.1:-80559917	MS.gene48487:CDS
ATTGAAATTATTATCCTTTA+AGG	0.053225	3.1:+80559930	None:intergenic
TCATGGTGAATCCTTACTTT+TGG	0.204822	3.1:-80559888	MS.gene48487:CDS
CAGCCGCTTACAATGATTCT+TGG	0.307666	3.1:-80560095	MS.gene48487:CDS
TAAACTTTATCATAATATAT+TGG	0.313129	3.1:-80559659	MS.gene48487:CDS
TGGGAGGATTGTGATGTCTT+TGG	0.313418	3.1:+80560323	None:intergenic
AGGAAACTACATAGCCTTAA+AGG	0.329994	3.1:-80559944	MS.gene48487:CDS
TTGAGGGAGTTATGGTAAAC+AGG	0.343629	3.1:+80560189	None:intergenic
CATAATATATTGGTTAATAG+TGG	0.368553	3.1:-80559649	MS.gene48487:CDS
GGTGGATAGATGGTGGGAAT+TGG	0.384327	3.1:-80559815	MS.gene48487:CDS
TCGCTATCTCGGTTAATTAC+CGG	0.400920	3.1:-80560140	MS.gene48487:CDS
TTCTGCTACAAGTTTGTTGA+GGG	0.402134	3.1:+80560173	None:intergenic
CAAGTTTGTTGAGGGAGTTA+TGG	0.402947	3.1:+80560181	None:intergenic
GAAGAAGCTCCAGGGCTTGA+AGG	0.418009	3.1:-80559742	MS.gene48487:CDS
TTGGTTTGTCCATCTGATAA+AGG	0.425987	3.1:-80559796	MS.gene48487:CDS
GCTGAATTATATGAGATTCA+AGG	0.430850	3.1:-80559613	MS.gene48487:CDS
GGTTCCTTACCCCAAAAGTA+AGG	0.432228	3.1:+80559877	None:intergenic
TCACTTATTTCCACACCAAT+TGG	0.436714	3.1:+80559856	None:intergenic
CCATTGATTGTATACTTCCA+TGG	0.437221	3.1:-80560243	MS.gene48487:CDS
AAGAGAATGATTATGAAAGT+TGG	0.440131	3.1:-80560029	MS.gene48487:CDS
TCCTTTGATTAATCCGTTTG+TGG	0.442157	3.1:-80559764	MS.gene48487:CDS
GCTCCAGGGCTTGAAGGGTT+AGG	0.452764	3.1:-80559736	MS.gene48487:CDS
ATTCTTGGGAAGCAGTTCAA+TGG	0.455054	3.1:-80560080	MS.gene48487:CDS
AGAGGATGAAGATATACAAT+AGG	0.456378	3.1:+80560215	None:intergenic
TCATTGTAAGCGGCTGGAAG+TGG	0.457974	3.1:+80560102	None:intergenic
AGCCGCTTACAATGATTCTT+GGG	0.464184	3.1:-80560094	MS.gene48487:CDS
TCATAGATTTGTCGATGGGT+TGG	0.464440	3.1:+80560447	None:intergenic
AGAGAAGAATGGTGGATAGA+TGG	0.464480	3.1:-80559825	MS.gene48487:CDS
AAAGATATATTGATAGAAAG+AGG	0.465976	3.1:-80559682	MS.gene48487:CDS
CCATGGAAGTATACAATCAA+TGG	0.470075	3.1:+80560243	None:intergenic
GTGGATGTTCCGGTGCTAAC+CGG	0.472727	3.1:+80560121	None:intergenic
CCGTTTGTGGAAGAAGCTCC+AGG	0.475107	3.1:-80559751	MS.gene48487:CDS
ATATATTGGTTAATAGTGGT+TGG	0.476791	3.1:-80559645	MS.gene48487:CDS
CAAGAATCATTGTAAGCGGC+TGG	0.479330	3.1:+80560096	None:intergenic
CTTCTGCTACAAGTTTGTTG+AGG	0.480079	3.1:+80560172	None:intergenic
GGCATTGGCGTCGTTCCTCC+CGG	0.480972	3.1:-80560372	MS.gene48487:CDS
GCGGCTGGAAGTGGATGTTC+CGG	0.485630	3.1:+80560111	None:intergenic
TTGGAGATAACGTTTGTTTG+AGG	0.489762	3.1:+80560342	None:intergenic
CCTGGAGCTTCTTCCACAAA+CGG	0.490261	3.1:+80559751	None:intergenic
GTTTGTTTGAGGATCGATGC+CGG	0.495904	3.1:+80560353	None:intergenic
AACTTCATAGATTTGTCGAT+GGG	0.496050	3.1:+80560443	None:intergenic
TCATCATTTCCTTTATCAGA+TGG	0.496874	3.1:+80559787	None:intergenic
TTTGTTTGAGGATCGATGCC+GGG	0.502447	3.1:+80560354	None:intergenic
TTCTTGGCAGGTGATAGTGC+AGG	0.508682	3.1:-80559976	MS.gene48487:CDS
GTCGAAAGATATGCCGGCAT+TGG	0.510442	3.1:-80560387	MS.gene48487:CDS
GCTTCACATGCTGTTGAAGA+TGG	0.513321	3.1:-80560054	MS.gene48487:CDS
GGGAGGAACGACGCCAATGC+CGG	0.515304	3.1:+80560374	None:intergenic
CTGAATTATATGAGATTCAA+GGG	0.517407	3.1:-80559612	MS.gene48487:CDS
CTCTTAGCTTTATCACACTC+AGG	0.520717	3.1:+80559562	None:intergenic
ACACCTAACCCTTCAAGCCC+TGG	0.529370	3.1:+80559733	None:intergenic
ATATAGTCTTGCTGTGACAC+CGG	0.533831	3.1:+80560296	None:intergenic
AGCAAACATCATCGCTATCT+CGG	0.546431	3.1:-80560151	MS.gene48487:CDS
TTGGTTAATAGTGGTTGGAA+AGG	0.546510	3.1:-80559640	MS.gene48487:CDS
GAAGAATGGTGGATAGATGG+TGG	0.548405	3.1:-80559822	MS.gene48487:CDS
AAGAAGCTCCAGGGCTTGAA+GGG	0.550930	3.1:-80559741	MS.gene48487:CDS
TCCACAAACGGATTAATCAA+AGG	0.558343	3.1:+80559763	None:intergenic
AAGAATGGTGGATAGATGGT+GGG	0.558366	3.1:-80559821	MS.gene48487:CDS
GAACTTCATAGATTTGTCGA+TGG	0.569806	3.1:+80560442	None:intergenic
GATAGTGCAGGTGCTAACAT+AGG	0.572065	3.1:-80559964	MS.gene48487:CDS
GGTTAATTACCGGTTAGCAC+CGG	0.599685	3.1:-80560130	MS.gene48487:CDS
GGGTAAGGAACCAATTGGTG+TGG	0.605765	3.1:-80559866	MS.gene48487:CDS
TTCCCAAGAATCATTGTAAG+CGG	0.612607	3.1:+80560092	None:intergenic
GGTACCGTCGAAAGATATGC+CGG	0.612722	3.1:-80560393	MS.gene48487:CDS
CGTTTGTGGAAGAAGCTCCA+GGG	0.617332	3.1:-80559750	MS.gene48487:CDS
TCTTTGTGTACACGAAGGTA+GGG	0.619638	3.1:+80560417	None:intergenic
GTTATGGTAAACAGGGTCAG+AGG	0.624470	3.1:+80560197	None:intergenic
TGATGATTTGAAGAGAAGAA+TGG	0.628091	3.1:-80559836	MS.gene48487:CDS
GTCTTTGTGTACACGAAGGT+AGG	0.633999	3.1:+80560416	None:intergenic
TACCTTCGTGTACACAAAGA+CGG	0.636875	3.1:-80560414	MS.gene48487:CDS
TGATTTGAAGAGAAGAATGG+TGG	0.647899	3.1:-80559833	MS.gene48487:CDS
AATGCCGGCATATCTTTCGA+CGG	0.666567	3.1:+80560389	None:intergenic
TGAGGGAGTTATGGTAAACA+GGG	0.672820	3.1:+80560190	None:intergenic
TTGATTGTATACTTCCATGG+TGG	0.674326	3.1:-80560240	MS.gene48487:CDS
GTTTGAGGATCGATGCCGGG+AGG	0.683731	3.1:+80560357	None:intergenic
TTGTGTACACGAAGGTAGGG+AGG	0.684898	3.1:+80560420	None:intergenic
ATATACAATAGGCTCCACCA+TGG	0.708865	3.1:+80560226	None:intergenic
TACCGTCTTTGTGTACACGA+AGG	0.725120	3.1:+80560412	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TAAACTTTATCATAATATAT+TGG	-	chr3.1:80560319-80560338	MS.gene48487:CDS	10.0%
!!	ATTGAAATTATTATCCTTTA+AGG	+	chr3.1:80560051-80560070	None:intergenic	15.0%
!!!	AATTTCAATTTCAAGATTTT+GGG	-	chr3.1:80560062-80560081	MS.gene48487:CDS	15.0%
!!!	TAATTTCAATTTCAAGATTT+TGG	-	chr3.1:80560061-80560080	MS.gene48487:CDS	15.0%
!!	AAAGATATATTGATAGAAAG+AGG	-	chr3.1:80560296-80560315	MS.gene48487:CDS	20.0%
!!!	CATAATATATTGGTTAATAG+TGG	-	chr3.1:80560329-80560348	MS.gene48487:CDS	20.0%
!	AAGAGAATGATTATGAAAGT+TGG	-	chr3.1:80559949-80559968	MS.gene48487:CDS	25.0%
!	CTGAATTATATGAGATTCAA+GGG	-	chr3.1:80560366-80560385	MS.gene48487:CDS	25.0%
!!	ATATATTGGTTAATAGTGGT+TGG	-	chr3.1:80560333-80560352	MS.gene48487:CDS	25.0%
!!	TGACTTTAACAAAGTTTTCT+TGG	-	chr3.1:80559986-80560005	MS.gene48487:CDS	25.0%
!!!	TTTTCTGAAGTTGAATTGTT+TGG	+	chr3.1:80559711-80559730	None:intergenic	25.0%
	AACTTCATAGATTTGTCGAT+GGG	+	chr3.1:80559538-80559557	None:intergenic	30.0%
	AGAGGATGAAGATATACAAT+AGG	+	chr3.1:80559766-80559785	None:intergenic	30.0%
	GCTGAATTATATGAGATTCA+AGG	-	chr3.1:80560365-80560384	MS.gene48487:CDS	30.0%
	TCATCATTTCCTTTATCAGA+TGG	+	chr3.1:80560194-80560213	None:intergenic	30.0%
	TGATGATTTGAAGAGAAGAA+TGG	-	chr3.1:80560142-80560161	MS.gene48487:CDS	30.0%
!	TTTAACAAAGTTTTCTTGGC+AGG	-	chr3.1:80559990-80560009	MS.gene48487:CDS	30.0%
	GAACTTCATAGATTTGTCGA+TGG	+	chr3.1:80559539-80559558	None:intergenic	35.0%
	TCACTTATTTCCACACCAAT+TGG	+	chr3.1:80560125-80560144	None:intergenic	35.0%
	TCCTTTGATTAATCCGTTTG+TGG	-	chr3.1:80560214-80560233	MS.gene48487:CDS	35.0%
	TGATTTGAAGAGAAGAATGG+TGG	-	chr3.1:80560145-80560164	MS.gene48487:CDS	35.0%
	TTCCCAAGAATCATTGTAAG+CGG	+	chr3.1:80559889-80559908	None:intergenic	35.0%
	TTGATTGTATACTTCCATGG+TGG	-	chr3.1:80559738-80559757	MS.gene48487:CDS	35.0%
	TTGGAGATAACGTTTGTTTG+AGG	+	chr3.1:80559639-80559658	None:intergenic	35.0%
	TTGGTTAATAGTGGTTGGAA+AGG	-	chr3.1:80560338-80560357	MS.gene48487:CDS	35.0%
!	AGGAAACTACATAGCCTTAA+AGG	-	chr3.1:80560034-80560053	MS.gene48487:CDS	35.0%
!	CCATGGAAGTATACAATCAA+TGG	+	chr3.1:80559738-80559757	None:intergenic	35.0%
!	CCATTGATTGTATACTTCCA+TGG	-	chr3.1:80559735-80559754	MS.gene48487:CDS	35.0%
!	TCATGGTGAATCCTTACTTT+TGG	-	chr3.1:80560090-80560109	MS.gene48487:CDS	35.0%
!!	ATGGTGAATCCTTACTTTTG+GGG	-	chr3.1:80560092-80560111	MS.gene48487:CDS	35.0%
!!	CAAGATTTTGGGTCTTATCA+TGG	-	chr3.1:80560073-80560092	MS.gene48487:CDS	35.0%
!!	CATGGTGAATCCTTACTTTT+GGG	-	chr3.1:80560091-80560110	MS.gene48487:CDS	35.0%
!!	TCCACAAACGGATTAATCAA+AGG	+	chr3.1:80560218-80560237	None:intergenic	35.0%
!!	TTCTGCTACAAGTTTGTTGA+GGG	+	chr3.1:80559808-80559827	None:intergenic	35.0%
!!	TTGGTTTGTCCATCTGATAA+AGG	-	chr3.1:80560182-80560201	MS.gene48487:CDS	35.0%
	AGCAAACATCATCGCTATCT+CGG	-	chr3.1:80559827-80559846	MS.gene48487:CDS	40.0%
	AGCCGCTTACAATGATTCTT+GGG	-	chr3.1:80559884-80559903	MS.gene48487:CDS	40.0%
	ATATACAATAGGCTCCACCA+TGG	+	chr3.1:80559755-80559774	None:intergenic	40.0%
	ATCACAATCCTCCCAAAAAC+CGG	-	chr3.1:80559663-80559682	MS.gene48487:CDS	40.0%
	ATTCTTGGGAAGCAGTTCAA+TGG	-	chr3.1:80559898-80559917	MS.gene48487:CDS	40.0%
	TACCTTCGTGTACACAAAGA+CGG	-	chr3.1:80559564-80559583	MS.gene48487:CDS	40.0%
	TCATAGATTTGTCGATGGGT+TGG	+	chr3.1:80559534-80559553	None:intergenic	40.0%
	TCGCTATCTCGGTTAATTAC+CGG	-	chr3.1:80559838-80559857	MS.gene48487:CDS	40.0%
	TCTTTGTGTACACGAAGGTA+GGG	+	chr3.1:80559564-80559583	None:intergenic	40.0%
	TGAGGGAGTTATGGTAAACA+GGG	+	chr3.1:80559791-80559810	None:intergenic	40.0%
	TTGAGGGAGTTATGGTAAAC+AGG	+	chr3.1:80559792-80559811	None:intergenic	40.0%
!	ATATAGTCTTGCTGTGACAC+CGG	+	chr3.1:80559685-80559704	None:intergenic	40.0%
!!	AAGAATGGTGGATAGATGGT+GGG	-	chr3.1:80560157-80560176	MS.gene48487:CDS	40.0%
!!	AGAGAAGAATGGTGGATAGA+TGG	-	chr3.1:80560153-80560172	MS.gene48487:CDS	40.0%
!!	CAAGTTTGTTGAGGGAGTTA+TGG	+	chr3.1:80559800-80559819	None:intergenic	40.0%
!!	CTCTTAGCTTTATCACACTC+AGG	+	chr3.1:80560419-80560438	None:intergenic	40.0%
!!	CTTCTGCTACAAGTTTGTTG+AGG	+	chr3.1:80559809-80559828	None:intergenic	40.0%
!!!	GAATCCTTACTTTTGGGGTA+AGG	-	chr3.1:80560097-80560116	MS.gene48487:CDS	40.0%
!!!	TTTTGGGGTAAGGAACCAAT+TGG	-	chr3.1:80560107-80560126	MS.gene48487:CDS	40.0%
	AATGCCGGCATATCTTTCGA+CGG	+	chr3.1:80559592-80559611	None:intergenic	45.0%
	CAAGAATCATTGTAAGCGGC+TGG	+	chr3.1:80559885-80559904	None:intergenic	45.0%
	CAGCCGCTTACAATGATTCT+TGG	-	chr3.1:80559883-80559902	MS.gene48487:CDS	45.0%
	GATAGTGCAGGTGCTAACAT+AGG	-	chr3.1:80560014-80560033	MS.gene48487:CDS	45.0%
	GCTTCACATGCTGTTGAAGA+TGG	-	chr3.1:80559924-80559943	MS.gene48487:CDS	45.0%
	GGTTCCTTACCCCAAAAGTA+AGG	+	chr3.1:80560104-80560123	None:intergenic	45.0%
	GTCTTTGTGTACACGAAGGT+AGG	+	chr3.1:80559565-80559584	None:intergenic	45.0%
	GTTATGGTAAACAGGGTCAG+AGG	+	chr3.1:80559784-80559803	None:intergenic	45.0%
	GTTTGTTTGAGGATCGATGC+CGG	+	chr3.1:80559628-80559647	None:intergenic	45.0%
	TACCGTCTTTGTGTACACGA+AGG	+	chr3.1:80559569-80559588	None:intergenic	45.0%
	TGGGAGGATTGTGATGTCTT+TGG	+	chr3.1:80559658-80559677	None:intergenic	45.0%
	TTTGTTTGAGGATCGATGCC+GGG	+	chr3.1:80559627-80559646	None:intergenic	45.0%
!	GGTTAATTACCGGTTAGCAC+CGG	-	chr3.1:80559848-80559867	MS.gene48487:CDS	45.0%
!!	GAAGAATGGTGGATAGATGG+TGG	-	chr3.1:80560156-80560175	MS.gene48487:CDS	45.0%
!!!	TTGCTGTGACACCGGTTTTT+GGG	+	chr3.1:80559677-80559696	None:intergenic	45.0%
	AAGAAGCTCCAGGGCTTGAA+GGG	-	chr3.1:80560237-80560256	MS.gene48487:CDS	50.0%
	CCTGGAGCTTCTTCCACAAA+CGG	+	chr3.1:80560230-80560249	None:intergenic	50.0%
	CGTTTGTGGAAGAAGCTCCA+GGG	-	chr3.1:80560228-80560247	MS.gene48487:CDS	50.0%
	GGGTAAGGAACCAATTGGTG+TGG	-	chr3.1:80560112-80560131	MS.gene48487:CDS	50.0%
	GGTACCGTCGAAAGATATGC+CGG	-	chr3.1:80559585-80559604	MS.gene48487:CDS	50.0%
	GTCGAAAGATATGCCGGCAT+TGG	-	chr3.1:80559591-80559610	MS.gene48487:CDS	50.0%
	TCATTGTAAGCGGCTGGAAG+TGG	+	chr3.1:80559879-80559898	None:intergenic	50.0%
	TTGTGTACACGAAGGTAGGG+AGG	+	chr3.1:80559561-80559580	None:intergenic	50.0%
!	TTCTTGGCAGGTGATAGTGC+AGG	-	chr3.1:80560002-80560021	MS.gene48487:CDS	50.0%
!!	GGTGGATAGATGGTGGGAAT+TGG	-	chr3.1:80560163-80560182	MS.gene48487:CDS	50.0%
!!!	CTTGCTGTGACACCGGTTTT+TGG	+	chr3.1:80559678-80559697	None:intergenic	50.0%
	ACACCTAACCCTTCAAGCCC+TGG	+	chr3.1:80560248-80560267	None:intergenic	55.0%
	CCGTTTGTGGAAGAAGCTCC+AGG	-	chr3.1:80560227-80560246	MS.gene48487:CDS	55.0%
	GAAGAAGCTCCAGGGCTTGA+AGG	-	chr3.1:80560236-80560255	MS.gene48487:CDS	55.0%
!	GTGGATGTTCCGGTGCTAAC+CGG	+	chr3.1:80559860-80559879	None:intergenic	55.0%
!!!	CTGTGACACCGGTTTTTGGG+AGG	+	chr3.1:80559674-80559693	None:intergenic	55.0%
	GCGGCTGGAAGTGGATGTTC+CGG	+	chr3.1:80559870-80559889	None:intergenic	60.0%
	GCTCCAGGGCTTGAAGGGTT+AGG	-	chr3.1:80560242-80560261	MS.gene48487:CDS	60.0%
	GTTTGAGGATCGATGCCGGG+AGG	+	chr3.1:80559624-80559643	None:intergenic	60.0%
	GGGAGGAACGACGCCAATGC+CGG	+	chr3.1:80559607-80559626	None:intergenic	65.0%
!!	GGCATTGGCGTCGTTCCTCC+CGG	-	chr3.1:80559606-80559625	MS.gene48487:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	80559525	80560475	80559525	ID=MS.gene48487
chr3.1	mRNA	80559525	80560475	80559525	ID=MS.gene48487.t1;Parent=MS.gene48487
chr3.1	exon	80559525	80560475	80559525	ID=MS.gene48487.t1.exon1;Parent=MS.gene48487.t1
chr3.1	CDS	80559525	80560475	80559525	ID=cds.MS.gene48487.t1;Parent=MS.gene48487.t1

Gene Sequence

>MS.gene48487

ATGGATCCAACCCATCGACAAATCTATGAAGTTCCTCCCTACCTTCGTGTACACAAAGACGGTACCGTCGAAAGATATGCCGGCATTGGCGTCGTTCCTCCCGGCATCGATCCTCAAACAAACGTTATCTCCAAAGACATCACAATCCTCCCAAAAACCGGTGTCACAGCAAGACTATATTCTCCAAACAATTCAACTTCAGAAAAGCTTCCATTGATTGTATACTTCCATGGTGGAGCCTATTGTATATCTTCATCCTCTGACCCTGTTTACCATAACTCCCTCAACAAACTTGTAGCAGAAGCAAACATCATCGCTATCTCGGTTAATTACCGGTTAGCACCGGAACATCCACTTCCAGCCGCTTACAATGATTCTTGGGAAGCAGTTCAATGGATTGCTTCACATGCTGTTGAAGATGGTGAAGAGAATGATTATGAAAGTTGGCTTAAAGAAAAAGTTGACTTTAACAAAGTTTTCTTGGCAGGTGATAGTGCAGGTGCTAACATAGGAAACTACATAGCCTTAAAGGATAATAATTTCAATTTCAAGATTTTGGGTCTTATCATGGTGAATCCTTACTTTTGGGGTAAGGAACCAATTGGTGTGGAAATAAGTGATGATTTGAAGAGAAGAATGGTGGATAGATGGTGGGAATTGGTTTGTCCATCTGATAAAGGAAATGATGATCCTTTGATTAATCCGTTTGTGGAAGAAGCTCCAGGGCTTGAAGGGTTAGGTGTTGAAAAAGTTCTTGTTACTGTTTGTGAGAAAGATATATTGATAGAAAGAGGTAAACTTTATCATAATATATTGGTTAATAGTGGTTGGAAAGGAACTGCTGAATTATATGAGATTCAAGGGAAAGATCATGTGTTTCATATTTTCAATCCTGAGTGTGATAAAGCTAAGAGTTTGATTAAACGCATAGCTGTTTTCATCAATGAATAG

Protein sequence

>MS.gene48487.t1

MDPTHRQIYEVPPYLRVHKDGTVERYAGIGVVPPGIDPQTNVISKDITILPKTGVTARLYSPNNSTSEKLPLIVYFHGGAYCISSSSDPVYHNSLNKLVAEANIIAISVNYRLAPEHPLPAAYNDSWEAVQWIASHAVEDGEENDYESWLKEKVDFNKVFLAGDSAGANIGNYIALKDNNFNFKILGLIMVNPYFWGKEPIGVEISDDLKRRMVDRWWELVCPSDKGNDDPLINPFVEEAPGLEGLGVEKVLVTVCEKDILIERGKLYHNILVNSGWKGTAELYEIQGKDHVFHIFNPECDKAKSLIKRIAVFINE