Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48661.t1 | XP_024636075.1 | 84.6 | 877 | 125 | 5 | 1 | 872 | 1 | 872 | 0.00E+00 | 1194.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48661.t1 | F4J9Q6 | 56.0 | 141 | 58 | 3 | 1 | 138 | 1 | 140 | 2.1e-35 | 152.5 |
| MS.gene48661.t1 | F4J9Q6 | 33.6 | 262 | 148 | 3 | 612 | 871 | 261 | 498 | 5.1e-29 | 131.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48661.t1 | G7JN90 | 83.8 | 876 | 132 | 5 | 1 | 872 | 1 | 870 | 0.0e+00 | 1173.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049129 | MS.gene48661 | -0.805949 | 1.04E-49 | -1.69E-46 |
| MS.gene049411 | MS.gene48661 | 0.816158 | 6.39E-52 | -1.69E-46 |
| MS.gene050752 | MS.gene48661 | 0.810706 | 1.01E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene48661 | 0.820177 | 7.87E-53 | -1.69E-46 |
| MS.gene051003 | MS.gene48661 | 0.835638 | 1.49E-56 | -1.69E-46 |
| MS.gene051234 | MS.gene48661 | 0.820104 | 8.18E-53 | -1.69E-46 |
| MS.gene051746 | MS.gene48661 | 0.821986 | 3.02E-53 | -1.69E-46 |
| MS.gene051748 | MS.gene48661 | 0.807775 | 4.29E-50 | -1.69E-46 |
| MS.gene05188 | MS.gene48661 | 0.818979 | 1.48E-52 | -1.69E-46 |
| MS.gene051903 | MS.gene48661 | 0.813886 | 2.04E-51 | -1.69E-46 |
| MS.gene051975 | MS.gene48661 | 0.805745 | 1.15E-49 | -1.69E-46 |
| MS.gene052072 | MS.gene48661 | 0.808982 | 2.37E-50 | -1.69E-46 |
| MS.gene052434 | MS.gene48661 | 0.814384 | 1.58E-51 | -1.69E-46 |
| MS.gene052947 | MS.gene48661 | 0.825071 | 5.72E-54 | -1.69E-46 |
| MS.gene053058 | MS.gene48661 | 0.800272 | 1.56E-48 | -1.69E-46 |
| MS.gene053952 | MS.gene48661 | 0.818715 | 1.70E-52 | -1.69E-46 |
| MS.gene054403 | MS.gene48661 | 0.810517 | 1.11E-50 | -1.69E-46 |
| MS.gene055555 | MS.gene48661 | 0.815527 | 8.83E-52 | -1.69E-46 |
| MS.gene056986 | MS.gene48661 | 0.813192 | 2.90E-51 | -1.69E-46 |
| MS.gene057094 | MS.gene48661 | 0.818473 | 1.93E-52 | -1.69E-46 |
| MS.gene057234 | MS.gene48661 | 0.810745 | 9.90E-51 | -1.69E-46 |
| MS.gene05781 | MS.gene48661 | 0.827795 | 1.28E-54 | -1.69E-46 |
| MS.gene057999 | MS.gene48661 | 0.801148 | 1.03E-48 | -1.69E-46 |
| MS.gene059146 | MS.gene48661 | 0.843452 | 1.39E-58 | -1.69E-46 |
| MS.gene06011 | MS.gene48661 | 0.864629 | 1.06E-64 | -1.69E-46 |
| MS.gene060763 | MS.gene48661 | 0.891208 | 4.90E-74 | -1.69E-46 |
| MS.gene060830 | MS.gene48661 | 0.830967 | 2.18E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48661.t1 | MTR_4g032680 | 93.044 | 877 | 49 | 6 | 1 | 872 | 1 | 870 | 0.0 | 1489 |
| MS.gene48661.t1 | MTR_4g032680 | 92.825 | 878 | 49 | 8 | 1 | 872 | 1 | 870 | 0.0 | 1478 |
| MS.gene48661.t1 | MTR_4g032680 | 87.796 | 549 | 57 | 4 | 325 | 872 | 222 | 761 | 0.0 | 859 |
| MS.gene48661.t1 | MTR_4g032680 | 90.367 | 436 | 32 | 4 | 1 | 433 | 1 | 429 | 0.0 | 704 |
| MS.gene48661.t1 | MTR_4g032680 | 90.950 | 442 | 38 | 2 | 432 | 872 | 221 | 661 | 0.0 | 740 |
| MS.gene48661.t1 | MTR_4g032680 | 82.768 | 354 | 40 | 5 | 1 | 339 | 1 | 348 | 0.0 | 546 |
| MS.gene48661.t1 | MTR_5g008680 | 58.824 | 119 | 48 | 1 | 753 | 871 | 382 | 499 | 1.87e-39 | 154 |
| MS.gene48661.t1 | MTR_5g008680 | 37.778 | 225 | 122 | 7 | 1 | 213 | 1 | 219 | 3.99e-33 | 135 |
| MS.gene48661.t1 | MTR_8g012380 | 41.573 | 89 | 52 | 0 | 784 | 872 | 50 | 138 | 3.29e-14 | 71.2 |
| MS.gene48661.t1 | MTR_1g061850 | 35.484 | 124 | 66 | 5 | 757 | 871 | 125 | 243 | 4.77e-14 | 73.6 |
| MS.gene48661.t1 | MTR_8g038785 | 41.176 | 85 | 48 | 1 | 787 | 869 | 191 | 275 | 1.30e-13 | 75.1 |
| MS.gene48661.t1 | MTR_7g053470 | 36.047 | 86 | 55 | 0 | 784 | 869 | 52 | 137 | 2.28e-12 | 70.9 |
| MS.gene48661.t1 | MTR_8g080980 | 37.209 | 86 | 54 | 0 | 784 | 869 | 56 | 141 | 1.09e-11 | 68.9 |
| MS.gene48661.t1 | MTR_8g012340 | 36.782 | 87 | 55 | 0 | 783 | 869 | 57 | 143 | 1.86e-11 | 68.2 |
| MS.gene48661.t1 | MTR_4g094785 | 38.583 | 127 | 61 | 6 | 756 | 869 | 115 | 237 | 2.96e-11 | 65.1 |
| MS.gene48661.t1 | MTR_5g080300 | 35.714 | 84 | 53 | 1 | 787 | 869 | 35 | 118 | 5.11e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48661.t1 | AT3G12340 | 52.604 | 192 | 80 | 5 | 1 | 183 | 1 | 190 | 3.17e-45 | 171 |
| MS.gene48661.t1 | AT3G12340 | 30.831 | 373 | 204 | 10 | 510 | 872 | 171 | 499 | 2.78e-29 | 123 |
| MS.gene48661.t1 | AT4G25340 | 56.667 | 120 | 52 | 0 | 753 | 872 | 358 | 477 | 5.80e-41 | 157 |
| MS.gene48661.t1 | AT4G25340 | 32.889 | 225 | 131 | 7 | 1 | 211 | 1 | 219 | 4.52e-25 | 110 |
| MS.gene48661.t1 | AT3G12340 | 31.200 | 375 | 200 | 10 | 510 | 872 | 50 | 378 | 4.72e-30 | 123 |
| MS.gene48661.t1 | AT3G12340 | 31.200 | 375 | 200 | 10 | 510 | 872 | 50 | 378 | 4.72e-30 | 123 |
| MS.gene48661.t1 | AT5G05420 | 50.000 | 108 | 53 | 1 | 764 | 871 | 36 | 142 | 8.48e-30 | 115 |
| MS.gene48661.t1 | AT4G25340 | 32.889 | 225 | 131 | 7 | 1 | 211 | 1 | 219 | 2.00e-25 | 110 |
| MS.gene48661.t1 | AT4G25340 | 57.895 | 76 | 32 | 0 | 753 | 828 | 358 | 433 | 1.44e-22 | 102 |
| MS.gene48661.t1 | AT5G48580 | 41.573 | 89 | 52 | 0 | 784 | 872 | 52 | 140 | 1.07e-14 | 73.2 |
| MS.gene48661.t1 | AT3G10060 | 35.484 | 124 | 66 | 5 | 757 | 871 | 98 | 216 | 2.86e-14 | 73.6 |
| MS.gene48661.t1 | AT3G25220 | 42.697 | 89 | 51 | 0 | 784 | 872 | 52 | 140 | 3.41e-14 | 71.2 |
| MS.gene48661.t1 | AT5G48570 | 38.372 | 86 | 53 | 0 | 784 | 869 | 65 | 150 | 3.77e-13 | 73.6 |
| MS.gene48661.t1 | AT3G25230 | 37.931 | 87 | 54 | 0 | 784 | 870 | 57 | 143 | 4.48e-12 | 70.1 |
| MS.gene48661.t1 | AT3G25230 | 37.931 | 87 | 54 | 0 | 784 | 870 | 57 | 143 | 5.72e-12 | 69.7 |
Find 175 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGTCCTTGCAATTGAATT+TGG | 0.202666 | 4.3:-67918047 | MS.gene48661:CDS |
| TCATAAACCAACCATGAATT+TGG | 0.244200 | 4.3:+67910015 | None:intergenic |
| GTTATTGAGGGTTGGGATAT+TGG | 0.252092 | 4.3:-67910335 | MS.gene48661:CDS |
| CCATTTCTGTTGTCACCTTC+AGG | 0.260314 | 4.3:+67913164 | None:intergenic |
| CTTCCACTGTTCCGGATGTT+GGG | 0.283057 | 4.3:-67915585 | MS.gene48661:CDS |
| CTTCCACTGTTCCGGATGTT+GGG | 0.283057 | 4.3:-67916454 | MS.gene48661:CDS |
| CTTGAGACAGGGAAAGAAAA+TGG | 0.283603 | 4.3:-67910684 | MS.gene48661:CDS |
| GGCAGTTCCTTCCACTGTTC+CGG | 0.304338 | 4.3:-67915593 | MS.gene48661:CDS |
| GACAGTTCCTTCCACTGTTC+CGG | 0.305801 | 4.3:-67916462 | MS.gene48661:CDS |
| AATGTTATTCTTTCCGTCCT+TGG | 0.324140 | 4.3:-67918007 | MS.gene48661:CDS |
| ATATTTGAGCTTGCCTTCAT+TGG | 0.326158 | 4.3:+67917077 | None:intergenic |
| GGTCGATCCTTGCACTGTTC+CGG | 0.327548 | 4.3:-67916049 | MS.gene48661:CDS |
| AGTAATCAGGACACAGTTAA+TGG | 0.330450 | 4.3:-67913889 | MS.gene48661:CDS |
| AATTGCTACAGTAGGGAAAA+AGG | 0.333662 | 4.3:-67910658 | MS.gene48661:intron |
| TAAATCCTTTGTAAGGGTAT+TGG | 0.334919 | 4.3:-67916775 | MS.gene48661:CDS |
| CTCTGAATTTCAGGCCACTT+TGG | 0.335397 | 4.3:-67918161 | MS.gene48661:intron |
| TTTCTTAACTTTCTTATCTT+CGG | 0.342081 | 4.3:+67910869 | None:intergenic |
| AGCTTGCCTTCATTGGAAAT+AGG | 0.344631 | 4.3:+67917084 | None:intergenic |
| GAACACAGACGAGGATCTTC+TGG | 0.344791 | 4.3:-67915452 | MS.gene48661:CDS |
| TCTGAATTTCAGGCCACTTT+GGG | 0.345462 | 4.3:-67918160 | MS.gene48661:intron |
| TAGTGCTACTGAAACAAAAT+TGG | 0.347050 | 4.3:-67916246 | MS.gene48661:CDS |
| AGATTTCTCTGTTTCTGTAT+TGG | 0.347847 | 4.3:+67917182 | None:intergenic |
| CCTTCCACTGTTCCGGATGT+TGG | 0.349134 | 4.3:-67915586 | MS.gene48661:CDS |
| CCTTCCACTGTTCCGGATGT+TGG | 0.349134 | 4.3:-67916455 | MS.gene48661:CDS |
| CATTTGACAATGTTCTAACT+TGG | 0.359569 | 4.3:+67910724 | None:intergenic |
| ATGAACACTCACTTATCATT+AGG | 0.360171 | 4.3:+67915403 | None:intergenic |
| AGGAGAAGTTATTGAGGGTT+GGG | 0.373313 | 4.3:-67910342 | MS.gene48661:CDS |
| TGAAATGTGGAGGCGACCTT+TGG | 0.378340 | 4.3:+67919173 | None:intergenic |
| AGAAGAATAAATCCTTTGTA+AGG | 0.383149 | 4.3:-67916782 | MS.gene48661:CDS |
| GAAGAAGAAAAGTAAAAGTC+AGG | 0.385488 | 4.3:-67910844 | MS.gene48661:CDS |
| TAAAGAGAGCACAGATAAAC+AGG | 0.395132 | 4.3:+67918082 | None:intergenic |
| AAAACATACCACCAAATTCA+TGG | 0.412855 | 4.3:-67910026 | MS.gene48661:CDS |
| TTCTTTCCGTCCTTGGCCCT+CGG | 0.414122 | 4.3:-67918000 | MS.gene48661:CDS |
| CTTTGTAAGGGTATTGGATC+AGG | 0.415878 | 4.3:-67916769 | MS.gene48661:CDS |
| GGACTCTGCTGTCTCTTTGT+CGG | 0.416295 | 4.3:+67913115 | None:intergenic |
| CCTTGCACTGTTCCGGATGT+TGG | 0.419726 | 4.3:-67916042 | MS.gene48661:CDS |
| AAACTCTGGCGTGCCTGTAT+CGG | 0.424241 | 4.3:-67910808 | MS.gene48661:CDS |
| TTTCCTGATCCAAGAGATCC+TGG | 0.427168 | 4.3:+67915899 | None:intergenic |
| GTTATTCAAGAGCTTGAGAC+AGG | 0.428795 | 4.3:-67910696 | MS.gene48661:CDS |
| TATCTGTGCTCTCTTTATCC+AGG | 0.431922 | 4.3:-67918076 | MS.gene48661:CDS |
| TTCTTGCAAAGAGAAGAAAT+TGG | 0.432751 | 4.3:+67916801 | None:intergenic |
| AAGGAGAAGTTATTGAGGGT+TGG | 0.439237 | 4.3:-67910343 | MS.gene48661:CDS |
| TGTGTTCATTTCCCTGAGGC+AGG | 0.441265 | 4.3:+67913911 | None:intergenic |
| CAATGTTGTTAACCTGCCTC+AGG | 0.441931 | 4.3:-67913923 | MS.gene48661:CDS |
| GATGATGATAGCGGCCTTGA+AGG | 0.442074 | 4.3:-67916888 | MS.gene48661:CDS |
| TATCTTGCCCGTGGCCGCTA+TGG | 0.443510 | 4.3:-67917956 | MS.gene48661:CDS |
| CTGGCAAGTTGAAGGAAAAC+GGG | 0.443905 | 4.3:-67910505 | MS.gene48661:CDS |
| TTTCCTGATCAAAGTGATCC+TGG | 0.444859 | 4.3:+67916333 | None:intergenic |
| GAACATGGCCCAGGATCTCT+TGG | 0.449898 | 4.3:-67915908 | MS.gene48661:CDS |
| TGGCCGCTATGGCAATACTA+TGG | 0.452319 | 4.3:-67917945 | MS.gene48661:CDS |
| GGGAAATGAACACAGTAATC+AGG | 0.452685 | 4.3:-67913902 | MS.gene48661:CDS |
| GGTTGGGATATTGGTCTTGA+AGG | 0.456064 | 4.3:-67910326 | MS.gene48661:intron |
| CCTGAAGGTGACAACAGAAA+TGG | 0.456412 | 4.3:-67913164 | MS.gene48661:CDS |
| AAAATCACATACGTCATTGA+TGG | 0.458266 | 4.3:+67910167 | None:intergenic |
| ACTGGCAAGTTGAAGGAAAA+CGG | 0.458754 | 4.3:-67910506 | MS.gene48661:CDS |
| ATCGCCATTACTAGAACTCT+TGG | 0.460617 | 4.3:+67915972 | None:intergenic |
| GGATCTCTTGGATCAGGAAA+TGG | 0.461360 | 4.3:-67915896 | MS.gene48661:CDS |
| AAGGGTATTGGATCAGGAAA+TGG | 0.462620 | 4.3:-67916763 | MS.gene48661:CDS |
| TTGTGCAGCATTATCTAGTT+CGG | 0.464224 | 4.3:+67915945 | None:intergenic |
| TCTTCGGATTGATTTCCATC+AGG | 0.465182 | 4.3:+67910885 | None:intergenic |
| TCACTGAGAGTCAGATTCAT+AGG | 0.468116 | 4.3:-67916641 | MS.gene48661:intron |
| CAGTGTGCATGTACAATCTC+AGG | 0.468383 | 4.3:-67916847 | MS.gene48661:CDS |
| GGCCCAGGATCTCTTGGATC+AGG | 0.470381 | 4.3:-67915902 | MS.gene48661:CDS |
| CAAGTTAGAACATTGTCAAA+TGG | 0.473879 | 4.3:-67910723 | MS.gene48661:CDS |
| GTAATCAGGACACAGTTAAT+GGG | 0.477374 | 4.3:-67913888 | MS.gene48661:intron |
| GACAAAGAAGCAATTGATGC+TGG | 0.478437 | 4.3:-67916729 | MS.gene48661:CDS |
| TTTCAGTAGCACTATTCTCA+TGG | 0.478874 | 4.3:+67916255 | None:intergenic |
| TGCAAGGACTCAGTTTGTCC+TGG | 0.479083 | 4.3:+67918058 | None:intergenic |
| TTTCAATAATACTGTTCTCA+TGG | 0.480905 | 4.3:+67916688 | None:intergenic |
| ACTTATCATTAGGTTGCTGC+TGG | 0.489995 | 4.3:+67915413 | None:intergenic |
| GTACTTTGCTCAACCGATAC+AGG | 0.491823 | 4.3:+67910795 | None:intergenic |
| CAGTGGAAGGAACTGCCAAC+TGG | 0.491931 | 4.3:+67915599 | None:intergenic |
| GACAATGTTCTAACTTGGGA+AGG | 0.493720 | 4.3:+67910729 | None:intergenic |
| GTTGGTTTATGACTTTGAAC+TGG | 0.494478 | 4.3:-67910004 | MS.gene48661:CDS |
| CAATTACACTGGCAAGTTGA+AGG | 0.496463 | 4.3:-67910513 | MS.gene48661:CDS |
| AGCTGAACCTTCTGATCACT+TGG | 0.500805 | 4.3:-67916070 | MS.gene48661:CDS |
| AATGGGAAAATTGCTACAGT+AGG | 0.508437 | 4.3:-67910666 | MS.gene48661:CDS |
| TTCACAGGTTGGTCAAGGAC+AGG | 0.509597 | 4.3:-67914019 | MS.gene48661:CDS |
| CATACCACCAAATTCATGGT+TGG | 0.511268 | 4.3:-67910022 | MS.gene48661:CDS |
| TAAAATACTACCTTCTTCAC+AGG | 0.511997 | 4.3:-67914034 | MS.gene48661:CDS |
| GAAGTACCAGTTGGTAGAGT+CGG | 0.515717 | 4.3:-67916910 | MS.gene48661:CDS |
| TTCCACTGTTCCGGATGTTG+GGG | 0.516382 | 4.3:-67915584 | MS.gene48661:CDS |
| TTCCACTGTTCCGGATGTTG+GGG | 0.516382 | 4.3:-67916453 | MS.gene48661:CDS |
| AGGTAAAGGAGAAGTTATTG+AGG | 0.516723 | 4.3:-67910348 | MS.gene48661:CDS |
| GAATCATAAGTGTGAGTGAA+AGG | 0.517316 | 4.3:+67919198 | None:intergenic |
| GGTAAAGGAGAAGTTATTGA+GGG | 0.518782 | 4.3:-67910347 | MS.gene48661:CDS |
| TTTCAGGCCACTTTGGGACA+TGG | 0.520724 | 4.3:-67918154 | MS.gene48661:intron |
| CATCATCCGACTCTACCAAC+TGG | 0.521088 | 4.3:+67916904 | None:intergenic |
| GCTCCTTTCAAATTTCGCCT+TGG | 0.521588 | 4.3:-67910455 | MS.gene48661:intron |
| GTCCCAGGATCACTTTGATC+AGG | 0.522854 | 4.3:-67916336 | MS.gene48661:CDS |
| GCAATTGAATTTGGAGCTTG+AGG | 0.523659 | 4.3:-67918038 | MS.gene48661:CDS |
| TTGAGACAGGGAAAGAAAAT+GGG | 0.525124 | 4.3:-67910683 | MS.gene48661:CDS |
| TAGTATTGCCATAGCGGCCA+CGG | 0.525730 | 4.3:+67917948 | None:intergenic |
| TGATTCTCAGGCATGCGAGT+TGG | 0.529832 | 4.3:-67910215 | MS.gene48661:intron |
| CCTTGACCAACCTGTGAAGA+AGG | 0.529915 | 4.3:+67914024 | None:intergenic |
| ACTGAGATGATGGAAGAGGA+TGG | 0.530349 | 4.3:-67910774 | MS.gene48661:CDS |
| AATTTGGAGCTTGAGGAAGA+TGG | 0.534366 | 4.3:-67918031 | MS.gene48661:CDS |
| TGAGCAAAGTACTGAGATGA+TGG | 0.540063 | 4.3:-67910784 | MS.gene48661:CDS |
| CACACTTATGATTCTTCCAA+AGG | 0.540990 | 4.3:-67919189 | MS.gene48661:CDS |
| ATTTGACAATGTTCTAACTT+GGG | 0.541426 | 4.3:+67910725 | None:intergenic |
| TCGCAGATATTCAAACTCAT+AGG | 0.545219 | 4.3:-67915774 | MS.gene48661:intron |
| AGCTGAACCTTCAGACCAGT+TGG | 0.547478 | 4.3:-67915614 | MS.gene48661:CDS |
| GACAGAGAAACAGTTGATGC+TGG | 0.549982 | 4.3:-67916296 | MS.gene48661:CDS |
| GCATCTCCTATTTCCAATGA+AGG | 0.550943 | 4.3:-67917090 | MS.gene48661:intron |
| ACAATGGAAAGGGAATCATA+TGG | 0.551522 | 4.3:-67917216 | MS.gene48661:intron |
| TGAGAATCTGTCTCAGAGGA+AGG | 0.554915 | 4.3:+67913236 | None:intergenic |
| AGCACTCTGCAATGTAATGT+GGG | 0.555619 | 4.3:-67918115 | MS.gene48661:CDS |
| AGGTCGCCTCCACATTTCAA+TGG | 0.556393 | 4.3:-67919169 | MS.gene48661:intron |
| AAGTACTGAGATGATGGAAG+AGG | 0.558158 | 4.3:-67910778 | MS.gene48661:CDS |
| TTACCAAGGCGAAATTTGAA+AGG | 0.559040 | 4.3:+67910452 | None:intergenic |
| GATGAATACTCCGAGGGCCA+AGG | 0.559789 | 4.3:+67917990 | None:intergenic |
| TGCATGTTTCAGGTCTAAGA+AGG | 0.559920 | 4.3:-67910061 | MS.gene48661:intron |
| GCAGGTGTTGAAATCAAACC+TGG | 0.561306 | 4.3:-67919225 | MS.gene48661:intron |
| ATACTACCTTCTTCACAGGT+TGG | 0.562544 | 4.3:-67914030 | MS.gene48661:CDS |
| AGGCAGGAAAGCTGAAACCA+CGG | 0.563166 | 4.3:-67914058 | MS.gene48661:intron |
| CTGATCCAATACCCTTACAA+AGG | 0.563428 | 4.3:+67916770 | None:intergenic |
| GGAACTGCCAACTGGTCTGA+AGG | 0.564194 | 4.3:+67915607 | None:intergenic |
| CCTTCTTCACAGGTTGGTCA+AGG | 0.564207 | 4.3:-67914024 | MS.gene48661:CDS |
| GTGCGAAAGGCAGCAGAAGA+CGG | 0.564863 | 4.3:-67916941 | MS.gene48661:CDS |
| TTGCAGATAGTCAGACTCAC+AGG | 0.565785 | 4.3:-67916208 | MS.gene48661:intron |
| TTCCTGATCAAAGTGATCCT+GGG | 0.566097 | 4.3:+67916334 | None:intergenic |
| TGCAGCATTATCTAGTTCAG+TGG | 0.568551 | 4.3:+67916382 | None:intergenic |
| AAGGCAGCAGAAGACGGCTG+AGG | 0.570683 | 4.3:-67916935 | MS.gene48661:CDS |
| AAGCACTCTGCAATGTAATG+TGG | 0.570727 | 4.3:-67918116 | MS.gene48661:CDS |
| ATGGGAAAATTGCTACAGTA+GGG | 0.572946 | 4.3:-67910665 | MS.gene48661:CDS |
| AAGCTCCAAATTCAATTGCA+AGG | 0.573154 | 4.3:+67918042 | None:intergenic |
| AAGAAGAAAAGTAAAAGTCA+GGG | 0.578925 | 4.3:-67910843 | MS.gene48661:CDS |
| TGCAGCATTATCTAGTTCGG+TGG | 0.579079 | 4.3:+67915948 | None:intergenic |
| CGCAGCATTATCTAGATCGG+TGG | 0.581023 | 4.3:+67915492 | None:intergenic |
| GGAACTGTCAACTGATCTGA+AGG | 0.581399 | 4.3:+67916476 | None:intergenic |
| GGCAGTGAAGTCGTAAACTC+TGG | 0.583135 | 4.3:-67910822 | MS.gene48661:CDS |
| GGATCGACCAAGTGATCAGA+AGG | 0.590673 | 4.3:+67916063 | None:intergenic |
| GACAAAGAAGCAGTTGATGA+TGG | 0.591027 | 4.3:-67915862 | MS.gene48661:CDS |
| CCAACATCCGGAACAGTGCA+AGG | 0.592707 | 4.3:+67916042 | None:intergenic |
| GAAGAATAAATCCTTTGTAA+GGG | 0.593834 | 4.3:-67916781 | MS.gene48661:CDS |
| TAAACCAACCATGAATTTGG+TGG | 0.597643 | 4.3:+67910018 | None:intergenic |
| CCAACATCCGGAACAGTGGA+AGG | 0.599169 | 4.3:+67915586 | None:intergenic |
| CCAACATCCGGAACAGTGGA+AGG | 0.599169 | 4.3:+67916455 | None:intergenic |
| AGCATTATCTAGTTCAGTGG+AGG | 0.600926 | 4.3:+67916385 | None:intergenic |
| GAAACCAAGAGTTCTAGTAA+TGG | 0.601240 | 4.3:-67915976 | MS.gene48661:CDS |
| AGTATTGCCATAGCGGCCAC+GGG | 0.602067 | 4.3:+67917949 | None:intergenic |
| TTGCGCAGCATTATCTAGAT+CGG | 0.602410 | 4.3:+67915489 | None:intergenic |
| ATCACATACGTCATTGATGG+TGG | 0.602573 | 4.3:+67910170 | None:intergenic |
| AATGTTGTTAACCTGCCTCA+GGG | 0.602636 | 4.3:-67913922 | MS.gene48661:CDS |
| GCAGAGGAAGCATCTTCTGA+TGG | 0.602658 | 4.3:-67916975 | MS.gene48661:intron |
| TGCGGTTATTATCTTGCCCG+TGG | 0.602837 | 4.3:-67917965 | MS.gene48661:CDS |
| TGCAGTGCCATGTCCCAAAG+TGG | 0.602865 | 4.3:+67918147 | None:intergenic |
| GGTGCTCAAGACAATCCTGA+TGG | 0.604417 | 4.3:-67910900 | MS.gene48661:CDS |
| GTGGTGATTGAATCAAATGC+TGG | 0.607008 | 4.3:-67910482 | MS.gene48661:CDS |
| AACAAAGCTTCATATCCTGA+AGG | 0.610921 | 4.3:-67913179 | MS.gene48661:CDS |
| ATCCCCAACATCCGGAACAG+TGG | 0.617458 | 4.3:+67915582 | None:intergenic |
| CAGATCAGCATCAATTACAC+TGG | 0.623336 | 4.3:-67910524 | MS.gene48661:CDS |
| TGTTTCAGGTCTAAGAAGGA+TGG | 0.623488 | 4.3:-67910057 | MS.gene48661:intron |
| AAACTTATCACTCAGACCAT+CGG | 0.623766 | 4.3:+67913094 | None:intergenic |
| ACAGACGAGGATCTTCTGGC+AGG | 0.625586 | 4.3:-67915448 | MS.gene48661:CDS |
| TTCCTGATCCAAGAGATCCT+GGG | 0.625814 | 4.3:+67915900 | None:intergenic |
| GAAAGATTACCATTGAAATG+TGG | 0.627543 | 4.3:+67919160 | None:intergenic |
| CGCAGAGATGAATACTCCGA+GGG | 0.629223 | 4.3:+67917984 | None:intergenic |
| CATCCATAGTATTGCCATAG+CGG | 0.629804 | 4.3:+67917942 | None:intergenic |
| ATTCTCAAAAGAAAACAAAG+AGG | 0.632744 | 4.3:-67913220 | MS.gene48661:CDS |
| AGATTACCATTGAAATGTGG+AGG | 0.633007 | 4.3:+67919163 | None:intergenic |
| GGTGACAACAGAAATGGAGA+AGG | 0.633425 | 4.3:-67913158 | MS.gene48661:CDS |
| AATACTCCGAGGGCCAAGGA+CGG | 0.634343 | 4.3:+67917994 | None:intergenic |
| ATCCCCAACATCCGGAACAG+TGG | 0.646276 | 4.3:+67916451 | None:intergenic |
| TGGTGCAGCAGTGTGGACAA+TGG | 0.653645 | 4.3:-67910921 | MS.gene48661:intron |
| AAAGAGACAGCAGAGTCCGA+TGG | 0.654236 | 4.3:-67913110 | MS.gene48661:CDS |
| GAGGAAGCATCTTCTGATGG+CGG | 0.656231 | 4.3:-67916972 | MS.gene48661:CDS |
| TTATTCAAGAGCTTGAGACA+GGG | 0.658642 | 4.3:-67910695 | MS.gene48661:CDS |
| GCTGAGGAAGAAGTACCAGT+TGG | 0.680204 | 4.3:-67916919 | MS.gene48661:CDS |
| TTACTGTGTTCATTTCCCTG+AGG | 0.689976 | 4.3:+67913907 | None:intergenic |
| GTAGAGTCGGATGATGATAG+CGG | 0.696596 | 4.3:-67916897 | MS.gene48661:CDS |
| CCGCAGAGATGAATACTCCG+AGG | 0.717928 | 4.3:+67917983 | None:intergenic |
| CAAGTTGAAGGAAAACGGGG+TGG | 0.725155 | 4.3:-67910501 | MS.gene48661:CDS |
| CCTCGGAGTATTCATCTCTG+CGG | 0.742424 | 4.3:-67917983 | MS.gene48661:CDS |
| TGGCAAGTTGAAGGAAAACG+GGG | 0.750008 | 4.3:-67910504 | MS.gene48661:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 67909990 | 67919337 | 67909990 | ID=MS.gene48661 |
| chr4.3 | mRNA | 67909990 | 67919337 | 67909990 | ID=MS.gene48661.t1;Parent=MS.gene48661 |
| chr4.3 | exon | 67919325 | 67919337 | 67919325 | ID=MS.gene48661.t1.exon1;Parent=MS.gene48661.t1 |
| chr4.3 | CDS | 67919325 | 67919337 | 67919325 | ID=cds.MS.gene48661.t1;Parent=MS.gene48661.t1 |
| chr4.3 | exon | 67919170 | 67919243 | 67919170 | ID=MS.gene48661.t1.exon2;Parent=MS.gene48661.t1 |
| chr4.3 | CDS | 67919170 | 67919243 | 67919170 | ID=cds.MS.gene48661.t1;Parent=MS.gene48661.t1 |
| chr4.3 | exon | 67917938 | 67918170 | 67917938 | ID=MS.gene48661.t1.exon3;Parent=MS.gene48661.t1 |
| chr4.3 | CDS | 67917938 | 67918170 | 67917938 | ID=cds.MS.gene48661.t1;Parent=MS.gene48661.t1 |
| chr4.3 | exon | 67917091 | 67917227 | 67917091 | ID=MS.gene48661.t1.exon4;Parent=MS.gene48661.t1 |
| chr4.3 | CDS | 67917091 | 67917227 | 67917091 | ID=cds.MS.gene48661.t1;Parent=MS.gene48661.t1 |
| chr4.3 | exon | 67916642 | 67916993 | 67916642 | ID=MS.gene48661.t1.exon5;Parent=MS.gene48661.t1 |
| chr4.3 | CDS | 67916642 | 67916993 | 67916642 | ID=cds.MS.gene48661.t1;Parent=MS.gene48661.t1 |
| chr4.3 | exon | 67916209 | 67916508 | 67916209 | ID=MS.gene48661.t1.exon6;Parent=MS.gene48661.t1 |
| chr4.3 | CDS | 67916209 | 67916508 | 67916209 | ID=cds.MS.gene48661.t1;Parent=MS.gene48661.t1 |
| chr4.3 | exon | 67915775 | 67916098 | 67915775 | ID=MS.gene48661.t1.exon7;Parent=MS.gene48661.t1 |
| chr4.3 | CDS | 67915775 | 67916098 | 67915775 | ID=cds.MS.gene48661.t1;Parent=MS.gene48661.t1 |
| chr4.3 | exon | 67915415 | 67915639 | 67915415 | ID=MS.gene48661.t1.exon8;Parent=MS.gene48661.t1 |
| chr4.3 | CDS | 67915415 | 67915639 | 67915415 | ID=cds.MS.gene48661.t1;Parent=MS.gene48661.t1 |
| chr4.3 | exon | 67913889 | 67914074 | 67913889 | ID=MS.gene48661.t1.exon9;Parent=MS.gene48661.t1 |
| chr4.3 | CDS | 67913889 | 67914074 | 67913889 | ID=cds.MS.gene48661.t1;Parent=MS.gene48661.t1 |
| chr4.3 | exon | 67913053 | 67913292 | 67913053 | ID=MS.gene48661.t1.exon10;Parent=MS.gene48661.t1 |
| chr4.3 | CDS | 67913053 | 67913292 | 67913053 | ID=cds.MS.gene48661.t1;Parent=MS.gene48661.t1 |
| chr4.3 | exon | 67910659 | 67910932 | 67910659 | ID=MS.gene48661.t1.exon11;Parent=MS.gene48661.t1 |
| chr4.3 | CDS | 67910659 | 67910932 | 67910659 | ID=cds.MS.gene48661.t1;Parent=MS.gene48661.t1 |
| chr4.3 | exon | 67910456 | 67910543 | 67910456 | ID=MS.gene48661.t1.exon12;Parent=MS.gene48661.t1 |
| chr4.3 | CDS | 67910456 | 67910543 | 67910456 | ID=cds.MS.gene48661.t1;Parent=MS.gene48661.t1 |
| chr4.3 | exon | 67910327 | 67910368 | 67910327 | ID=MS.gene48661.t1.exon13;Parent=MS.gene48661.t1 |
| chr4.3 | CDS | 67910327 | 67910368 | 67910327 | ID=cds.MS.gene48661.t1;Parent=MS.gene48661.t1 |
| chr4.3 | exon | 67910179 | 67910227 | 67910179 | ID=MS.gene48661.t1.exon14;Parent=MS.gene48661.t1 |
| chr4.3 | CDS | 67910179 | 67910227 | 67910179 | ID=cds.MS.gene48661.t1;Parent=MS.gene48661.t1 |
| chr4.3 | exon | 67909990 | 67910071 | 67909990 | ID=MS.gene48661.t1.exon15;Parent=MS.gene48661.t1 |
| chr4.3 | CDS | 67909990 | 67910071 | 67909990 | ID=cds.MS.gene48661.t1;Parent=MS.gene48661.t1 |
| Gene Sequence |
| Protein sequence |
