Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49205.t1 | XP_003615834.1 | 95.5 | 400 | 17 | 1 | 3 | 402 | 2 | 400 | 3.20E-203 | 717.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49205.t1 | Q8L774 | 70.8 | 343 | 100 | 0 | 59 | 401 | 46 | 388 | 3.6e-147 | 522.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49205.t1 | G7KEE1 | 95.5 | 400 | 17 | 1 | 3 | 402 | 2 | 400 | 2.3e-203 | 717.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049222 | MS.gene49205 | 0.814591 | 1.43E-51 | -1.69E-46 |
| MS.gene049356 | MS.gene49205 | 0.802636 | 5.11E-49 | -1.69E-46 |
| MS.gene050444 | MS.gene49205 | 0.811938 | 5.45E-51 | -1.69E-46 |
| MS.gene050538 | MS.gene49205 | 0.810467 | 1.14E-50 | -1.69E-46 |
| MS.gene050593 | MS.gene49205 | 0.805052 | 1.61E-49 | -1.69E-46 |
| MS.gene05080 | MS.gene49205 | 0.810272 | 1.25E-50 | -1.69E-46 |
| MS.gene05105 | MS.gene49205 | 0.827388 | 1.61E-54 | -1.69E-46 |
| MS.gene051228 | MS.gene49205 | 0.805555 | 1.26E-49 | -1.69E-46 |
| MS.gene051617 | MS.gene49205 | 0.856659 | 2.77E-62 | -1.69E-46 |
| MS.gene051666 | MS.gene49205 | 0.800545 | 1.37E-48 | -1.69E-46 |
| MS.gene051734 | MS.gene49205 | 0.818908 | 1.53E-52 | -1.69E-46 |
| MS.gene051838 | MS.gene49205 | 0.806079 | 9.79E-50 | -1.69E-46 |
| MS.gene052870 | MS.gene49205 | 0.854781 | 9.79E-62 | -1.69E-46 |
| MS.gene052872 | MS.gene49205 | 0.850258 | 1.91E-60 | -1.69E-46 |
| MS.gene053104 | MS.gene49205 | 0.828945 | 6.78E-55 | -1.69E-46 |
| MS.gene053449 | MS.gene49205 | 0.80844 | 3.09E-50 | -1.69E-46 |
| MS.gene053824 | MS.gene49205 | 0.809935 | 1.48E-50 | -1.69E-46 |
| MS.gene053916 | MS.gene49205 | 0.802103 | 6.58E-49 | -1.69E-46 |
| MS.gene05494 | MS.gene49205 | 0.809327 | 2.00E-50 | -1.69E-46 |
| MS.gene055206 | MS.gene49205 | 0.80775 | 4.34E-50 | -1.69E-46 |
| MS.gene055224 | MS.gene49205 | 0.806578 | 7.69E-50 | -1.69E-46 |
| MS.gene055539 | MS.gene49205 | 0.806049 | 9.93E-50 | -1.69E-46 |
| MS.gene055577 | MS.gene49205 | 0.807615 | 4.64E-50 | -1.69E-46 |
| MS.gene05592 | MS.gene49205 | 0.806575 | 7.70E-50 | -1.69E-46 |
| MS.gene055941 | MS.gene49205 | 0.813231 | 2.84E-51 | -1.69E-46 |
| MS.gene056511 | MS.gene49205 | 0.803945 | 2.74E-49 | -1.69E-46 |
| MS.gene056903 | MS.gene49205 | 0.807239 | 5.57E-50 | -1.69E-46 |
| MS.gene056947 | MS.gene49205 | 0.874481 | 6.53E-68 | -1.69E-46 |
| MS.gene057076 | MS.gene49205 | 0.838643 | 2.55E-57 | -1.69E-46 |
| MS.gene057926 | MS.gene49205 | 0.824794 | 6.65E-54 | -1.69E-46 |
| MS.gene057927 | MS.gene49205 | 0.841812 | 3.79E-58 | -1.69E-46 |
| MS.gene058748 | MS.gene49205 | 0.811922 | 5.49E-51 | -1.69E-46 |
| MS.gene05913 | MS.gene49205 | 0.813322 | 2.71E-51 | -1.69E-46 |
| MS.gene05934 | MS.gene49205 | 0.832903 | 7.25E-56 | -1.69E-46 |
| MS.gene060804 | MS.gene49205 | 0.822522 | 2.26E-53 | -1.69E-46 |
| MS.gene060835 | MS.gene49205 | 0.808251 | 3.40E-50 | -1.69E-46 |
| MS.gene061041 | MS.gene49205 | 0.83826 | 3.20E-57 | -1.69E-46 |
| MS.gene061154 | MS.gene49205 | 0.803239 | 3.83E-49 | -1.69E-46 |
| MS.gene061231 | MS.gene49205 | 0.817303 | 3.54E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49205.t1 | MTR_5g072900 | 95.761 | 401 | 14 | 2 | 3 | 402 | 2 | 400 | 0.0 | 790 |
| MS.gene49205.t1 | MTR_8g064720 | 36.474 | 329 | 184 | 8 | 54 | 378 | 60 | 367 | 1.34e-57 | 194 |
| MS.gene49205.t1 | MTR_7g006040 | 38.304 | 342 | 175 | 11 | 63 | 396 | 49 | 362 | 7.58e-57 | 191 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49205.t1 | AT1G07010 | 66.917 | 399 | 120 | 2 | 3 | 401 | 2 | 388 | 0.0 | 543 |
| MS.gene49205.t1 | AT1G07010 | 66.416 | 399 | 118 | 3 | 3 | 401 | 2 | 384 | 0.0 | 533 |
| MS.gene49205.t1 | AT1G07010 | 64.390 | 410 | 123 | 4 | 3 | 401 | 2 | 399 | 0.0 | 521 |
| MS.gene49205.t1 | AT1G18480 | 36.716 | 335 | 174 | 8 | 72 | 395 | 56 | 363 | 1.95e-59 | 198 |
Find 109 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGCTTTGTCTAGGTAAA+TGG | 0.194308 | 5.4:-61322139 | MS.gene49205:intron |
| TTGAAACCTATTGTTGTTAT+TGG | 0.205083 | 5.4:-61324283 | MS.gene49205:CDS |
| TTACCTCAGGTCTTGAATTA+AGG | 0.225021 | 5.4:+61320201 | None:intergenic |
| CTCAAACTGTTGGGGTAAAT+TGG | 0.237790 | 5.4:-61320492 | MS.gene49205:intron |
| GAAAGGTGGAGCTGTGTTTC+AGG | 0.243774 | 5.4:-61322681 | MS.gene49205:intron |
| GATTTCAGATATGTTGATTC+TGG | 0.255499 | 5.4:-61322088 | MS.gene49205:CDS |
| TGATGAATGTAGTGATTTCT+TGG | 0.278304 | 5.4:-61322059 | MS.gene49205:CDS |
| TTCTGCAGTTGCATATGGTT+TGG | 0.303558 | 5.4:-61321165 | MS.gene49205:intron |
| TTCACTGTATCTGTCCGTTT+TGG | 0.334866 | 5.4:+61320051 | None:intergenic |
| GATGGATTATGAGGTTAAAC+AGG | 0.341157 | 5.4:-61321003 | MS.gene49205:intron |
| AAGAGACTCACCAGATTTGA+TGG | 0.344529 | 5.4:-61321021 | MS.gene49205:CDS |
| TTGCCCGATCAATCCTCTTT+CGG | 0.346959 | 5.4:-61321633 | MS.gene49205:CDS |
| GAAATCCCCTTCCACATTCA+TGG | 0.358343 | 5.4:+61322105 | None:intergenic |
| ACGATAAAGCTAGAGTTATA+AGG | 0.381232 | 5.4:-61320075 | MS.gene49205:CDS |
| CCTGTCCTTGCTGCGATCAT+TGG | 0.382520 | 5.4:-61322720 | MS.gene49205:CDS |
| CTTTCGGCCTGGTGGGCCAC+TGG | 0.385890 | 5.4:-61321617 | MS.gene49205:CDS |
| AAGGCTATTGTGATTATTGT+TGG | 0.394236 | 5.4:+61324324 | None:intergenic |
| AACAAAGTCAAGAAGTCATT+GGG | 0.395929 | 5.4:-61321954 | MS.gene49205:CDS |
| TAGTGGCAATGAAAGGGATT+TGG | 0.399955 | 5.4:+61321081 | None:intergenic |
| GACTGGGAAGAAACATTTAC+AGG | 0.400766 | 5.4:-61322013 | MS.gene49205:CDS |
| CAATTTACCCCAACAGTTTG+AGG | 0.402208 | 5.4:+61320493 | None:intergenic |
| GACATACTCCTCAAACTGTT+GGG | 0.404387 | 5.4:-61320501 | MS.gene49205:CDS |
| ACCTCATAATCCATCAAATC+TGG | 0.412113 | 5.4:+61321011 | None:intergenic |
| GAGGTTATGACAGTGTTGTT+TGG | 0.412400 | 5.4:-61321058 | MS.gene49205:CDS |
| ACCAGATTTGATGGATTATG+AGG | 0.415130 | 5.4:-61321012 | MS.gene49205:CDS |
| CTTCCACATTCATGGTCTCA+TGG | 0.416944 | 5.4:+61322113 | None:intergenic |
| ATGACAGTGTTGTTTGGAAT+CGG | 0.427904 | 5.4:-61321052 | MS.gene49205:CDS |
| GGGTCACCAATAACAACAAT+AGG | 0.432348 | 5.4:+61324277 | None:intergenic |
| CACTGGCGTGTGAGCTTGCA+AGG | 0.436226 | 5.4:-61321600 | MS.gene49205:CDS |
| GGAAGAAACATTTACAGGTT+GGG | 0.438643 | 5.4:-61322008 | MS.gene49205:CDS |
| TTGCAGTGTTTCTTCAAGAA+TGG | 0.439809 | 5.4:+61320552 | None:intergenic |
| AGCTAGATATGCACTTGAAA+TGG | 0.443839 | 5.4:-61323260 | MS.gene49205:CDS |
| TCAATAATTCTGAAGATGAC+TGG | 0.446589 | 5.4:-61322030 | MS.gene49205:CDS |
| GTAAATACAATTGTAGCATA+TGG | 0.452563 | 5.4:-61320253 | MS.gene49205:CDS |
| GAACAAAGTCAAGAAGTCAT+TGG | 0.454433 | 5.4:-61321955 | MS.gene49205:CDS |
| GGACAGATACAGTGAACTTC+AGG | 0.454584 | 5.4:-61320044 | MS.gene49205:CDS |
| CGATCAATCCTCTTTCGGCC+TGG | 0.470126 | 5.4:-61321628 | MS.gene49205:CDS |
| GCTGGTGTGTTGAGCTCTGA+TGG | 0.477454 | 5.4:-61323238 | MS.gene49205:CDS |
| CGAGGATGAGGATGAGAAGA+TGG | 0.485016 | 5.4:+61324394 | None:intergenic |
| CAAGAAGTCATTGGGGACCT+TGG | 0.485464 | 5.4:-61321946 | MS.gene49205:CDS |
| CCTGGTCGCACTATTCTCGC+TGG | 0.489201 | 5.4:-61324235 | MS.gene49205:intron |
| GAGGTGTTGTTACGAGGATG+AGG | 0.489248 | 5.4:+61324382 | None:intergenic |
| AGCATATGGCGCGTAGATGT+TGG | 0.492916 | 5.4:-61320239 | MS.gene49205:CDS |
| ATTATTAGGACAGAGACAAA+AGG | 0.495750 | 5.4:-61321662 | MS.gene49205:intron |
| CAATCCTCTTTCGGCCTGGT+GGG | 0.501687 | 5.4:-61321624 | MS.gene49205:CDS |
| TGAGTAGTTGGAGATTTACA+TGG | 0.503137 | 5.4:-61323295 | MS.gene49205:intron |
| TATTAGGTGTTGATTCAACT+TGG | 0.506397 | 5.4:-61322779 | MS.gene49205:intron |
| GTGGCCCACCAGGCCGAAAG+AGG | 0.510742 | 5.4:+61321620 | None:intergenic |
| AACCTCTAGTGGCAATGAAA+GGG | 0.517144 | 5.4:+61321075 | None:intergenic |
| TCAATCCTCTTTCGGCCTGG+TGG | 0.518213 | 5.4:-61321625 | MS.gene49205:CDS |
| AAGGCATGGTGTTGCACTCA+AGG | 0.519563 | 5.4:-61321581 | MS.gene49205:CDS |
| GGACATACTCCTCAAACTGT+TGG | 0.520775 | 5.4:-61320502 | MS.gene49205:CDS |
| TAACCTCTAGTGGCAATGAA+AGG | 0.521573 | 5.4:+61321074 | None:intergenic |
| CCAATGATCGCAGCAAGGAC+AGG | 0.523343 | 5.4:+61322720 | None:intergenic |
| TTGCACTCAAGGTTAATGAC+TGG | 0.526498 | 5.4:-61321570 | MS.gene49205:CDS |
| GGGAAGAAACATTTACAGGT+TGG | 0.528520 | 5.4:-61322009 | MS.gene49205:CDS |
| CAGGCCGAAAGAGGATTGAT+CGG | 0.532500 | 5.4:+61321629 | None:intergenic |
| AATACCTTCACTAAATTCCA+AGG | 0.532662 | 5.4:+61321929 | None:intergenic |
| CAATAATTCTGAAGATGACT+GGG | 0.536582 | 5.4:-61322029 | MS.gene49205:CDS |
| TGATGCTAAGGCAATGGTGG+TGG | 0.540164 | 5.4:-61320524 | MS.gene49205:CDS |
| ATCCCTTTCATTGCCACTAG+AGG | 0.540858 | 5.4:-61321077 | MS.gene49205:CDS |
| AATGACTGGGTCTTCTGTCA+TGG | 0.548088 | 5.4:-61321556 | MS.gene49205:CDS |
| CAAAGAAGAAGAAGAAAGAG+AGG | 0.549838 | 5.4:+61324363 | None:intergenic |
| AGGCCGAAAGAGGATTGATC+GGG | 0.552133 | 5.4:+61321630 | None:intergenic |
| TGAGACCATGAATGTGGAAG+GGG | 0.554110 | 5.4:-61322110 | MS.gene49205:CDS |
| TTCAGATATGTTGATTCTGG+AGG | 0.554414 | 5.4:-61322085 | MS.gene49205:CDS |
| TAGAGTTATAAGGACCAAAA+CGG | 0.555374 | 5.4:-61320065 | MS.gene49205:CDS |
| GAAAGAGAGGTGTTGTTACG+AGG | 0.555547 | 5.4:+61324376 | None:intergenic |
| ACTGACCGTGGTGAGGAAGA+AGG | 0.565272 | 5.4:+61321530 | None:intergenic |
| GCTCTGATGGTCAAGACTTG+TGG | 0.566662 | 5.4:-61323225 | MS.gene49205:CDS |
| TCACACGCCAGTGGCCCACC+AGG | 0.567392 | 5.4:+61321610 | None:intergenic |
| TGCACTCAAGGTTAATGACT+GGG | 0.567545 | 5.4:-61321569 | MS.gene49205:CDS |
| TCTTGAATTAAGGACTCCAC+TGG | 0.567571 | 5.4:+61320211 | None:intergenic |
| ATAGTACTGTCATTCTCACT+TGG | 0.567957 | 5.4:+61321104 | None:intergenic |
| ACTGCAAGCAGTTGATGCTA+AGG | 0.569972 | 5.4:-61320536 | MS.gene49205:CDS |
| TTATTAGGACAGAGACAAAA+GGG | 0.571241 | 5.4:-61321661 | MS.gene49205:intron |
| AGATATGCACTTGAAATGGC+TGG | 0.572444 | 5.4:-61323256 | MS.gene49205:CDS |
| GATGGTCAAGACTTGTGGAC+TGG | 0.574733 | 5.4:-61323220 | MS.gene49205:CDS |
| GCGTGTGAGCTTGCAAGGCA+TGG | 0.576777 | 5.4:-61321595 | MS.gene49205:CDS |
| CATGAGACCATGAATGTGGA+AGG | 0.579915 | 5.4:-61322112 | MS.gene49205:CDS |
| AACACTGTCATAACCTCTAG+TGG | 0.580186 | 5.4:+61321064 | None:intergenic |
| GGAGCAGAAACAAAAGTTGG+TGG | 0.582357 | 5.4:+61324256 | None:intergenic |
| CCAGGAGCAGAAACAAAAGT+TGG | 0.582610 | 5.4:+61324253 | None:intergenic |
| GGGACCTTGGAATTTAGTGA+AGG | 0.593234 | 5.4:-61321933 | MS.gene49205:intron |
| CCAGCGAGAATAGTGCGACC+AGG | 0.596339 | 5.4:+61324235 | None:intergenic |
| GATAAACAAGCGAAATCGAA+AGG | 0.596790 | 5.4:-61322698 | MS.gene49205:CDS |
| GGATGAGAAGATGGTGAGAG+TGG | 0.608294 | 5.4:+61324403 | None:intergenic |
| ATGAGACCATGAATGTGGAA+GGG | 0.617703 | 5.4:-61322111 | MS.gene49205:CDS |
| ACATACTCCTCAAACTGTTG+GGG | 0.629092 | 5.4:-61320500 | MS.gene49205:CDS |
| GGGTTGATGTATCTGAGAAG+TGG | 0.629338 | 5.4:-61321988 | MS.gene49205:CDS |
| GAGCAGAAACAAAAGTTGGT+GGG | 0.630088 | 5.4:+61324257 | None:intergenic |
| GGCGGCCTTCTTCCTCACCA+CGG | 0.632687 | 5.4:-61321535 | MS.gene49205:intron |
| CTTGCAAGCTCACACGCCAG+TGG | 0.635650 | 5.4:+61321601 | None:intergenic |
| TTTATCCAATGATCGCAGCA+AGG | 0.638421 | 5.4:+61322715 | None:intergenic |
| GTAAAATACTGACCGTGGTG+AGG | 0.638720 | 5.4:+61321523 | None:intergenic |
| AGCAGTTGATGCTAAGGCAA+TGG | 0.660163 | 5.4:-61320530 | MS.gene49205:CDS |
| CTTGGAGATATATTAGATCG+AGG | 0.662741 | 5.4:-61322761 | MS.gene49205:CDS |
| GATGCTAAGGCAATGGTGGT+GGG | 0.662923 | 5.4:-61320523 | MS.gene49205:CDS |
| GGTCAAGACTTGTGGACTGG+TGG | 0.662970 | 5.4:-61323217 | MS.gene49205:CDS |
| CAGTTGCATATGGTTTGGAG+CGG | 0.665617 | 5.4:-61321160 | MS.gene49205:CDS |
| AAACCATGAGACCATGAATG+TGG | 0.677540 | 5.4:-61322116 | MS.gene49205:CDS |
| AGTCCTTAATTCAAGACCTG+AGG | 0.680639 | 5.4:-61320204 | MS.gene49205:intron |
| AAACAAGCGAAATCGAAAGG+TGG | 0.681777 | 5.4:-61322695 | MS.gene49205:CDS |
| CAGATACAGTGAACTTCAGG+CGG | 0.688619 | 5.4:-61320041 | MS.gene49205:CDS |
| GACTGGGTCTTCTGTCATGG+CGG | 0.692152 | 5.4:-61321553 | MS.gene49205:CDS |
| GTAGATGTTGGAATGTCCAG+TGG | 0.693208 | 5.4:-61320227 | MS.gene49205:CDS |
| AGTTGATGCTAAGGCAATGG+TGG | 0.697830 | 5.4:-61320527 | MS.gene49205:CDS |
| TGAACAAAGAAGTGTCTGAG+TGG | 0.728833 | 5.4:-61321136 | MS.gene49205:CDS |
| ACAAAGTCAAGAAGTCATTG+GGG | 0.742521 | 5.4:-61321953 | MS.gene49205:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCAATTAATTTTCAATAAA+TGG | - | chr5.4:61322301-61322320 | MS.gene49205:intron | 10.0% |
| !! | AAACTTCATAATAATAACAT+GGG | + | chr5.4:61322211-61322230 | None:intergenic | 15.0% |
| !! | AAATAAGCAAAATTAAGATA+TGG | + | chr5.4:61320271-61320290 | None:intergenic | 15.0% |
| !! | AACTCAATAATATAATATTC+AGG | - | chr5.4:61323882-61323901 | MS.gene49205:intron | 15.0% |
| !! | ATATATAAAAAACAGATAAC+AGG | + | chr5.4:61321126-61321145 | None:intergenic | 15.0% |
| !! | CAAATAATTCATTTCAAAAA+AGG | + | chr5.4:61321894-61321913 | None:intergenic | 15.0% |
| !! | CTACTTAATTTAGATAAAAA+TGG | + | chr5.4:61322234-61322253 | None:intergenic | 15.0% |
| !!! | AATATTTTTAGCTTAAACAA+GGG | + | chr5.4:61323577-61323596 | None:intergenic | 15.0% |
| !!! | TAATATTTTTAGCTTAAACA+AGG | + | chr5.4:61323578-61323597 | None:intergenic | 15.0% |
| !!! | TCTTAATTTTGCTTATTTTT+TGG | - | chr5.4:61320273-61320292 | MS.gene49205:intron | 15.0% |
| !! | AACAAAATTTAACATGGTAT+TGG | - | chr5.4:61323720-61323739 | MS.gene49205:intron | 20.0% |
| !! | AATAATGAAAAGTTACAGAA+AGG | + | chr5.4:61323695-61323714 | None:intergenic | 20.0% |
| !! | ACAAAATTTAACATGGTATT+GGG | - | chr5.4:61323721-61323740 | MS.gene49205:intron | 20.0% |
| !! | ATTCCTAATTCAAACTAATT+TGG | - | chr5.4:61322609-61322628 | MS.gene49205:intron | 20.0% |
| !! | GAAACTTCATAATAATAACA+TGG | + | chr5.4:61322212-61322231 | None:intergenic | 20.0% |
| !! | GATTTATAATGTAAAGATTG+TGG | + | chr5.4:61324074-61324093 | None:intergenic | 20.0% |
| !! | TAAGTCAACAAAATTTAACA+TGG | - | chr5.4:61323714-61323733 | MS.gene49205:intron | 20.0% |
| !! | TTGAATTAGGAATTTATTCT+TGG | + | chr5.4:61322602-61322621 | None:intergenic | 20.0% |
| !!! | ATTTTAATTCACTAATACGA+TGG | - | chr5.4:61321059-61321078 | MS.gene49205:CDS | 20.0% |
| !!! | TTTTTCTTTAGTATAGATTG+TGG | + | chr5.4:61324048-61324067 | None:intergenic | 20.0% |
| ! | ACAGTATGTGATTAATATGA+AGG | - | chr5.4:61323510-61323529 | MS.gene49205:intron | 25.0% |
| ! | AGTACTATAAACAGTAAGAA+TGG | + | chr5.4:61321521-61321540 | None:intergenic | 25.0% |
| ! | CTATTGTTGTCTTTAACATT+TGG | + | chr5.4:61322141-61322160 | None:intergenic | 25.0% |
| ! | GTAAATACAATTGTAGCATA+TGG | - | chr5.4:61324210-61324229 | MS.gene49205:intron | 25.0% |
| ! | TCACTATCTTGAATTGTATT+TGG | - | chr5.4:61323037-61323056 | MS.gene49205:intron | 25.0% |
| ! | TCATGTTAAACAAAACCAAA+AGG | + | chr5.4:61322969-61322988 | None:intergenic | 25.0% |
| ! | TTAAGGAAATAAGCTGAAAA+TGG | + | chr5.4:61321986-61322005 | None:intergenic | 25.0% |
| ! | TTGAATCAACACCTAATATA+CGG | + | chr5.4:61321682-61321701 | None:intergenic | 25.0% |
| ! | TTTAACCCATGGAATTATTA+AGG | + | chr5.4:61320721-61320740 | None:intergenic | 25.0% |
| !! | AGAATTTTGTGCTAGAAATA+TGG | - | chr5.4:61320853-61320872 | MS.gene49205:intron | 25.0% |
| !! | GTCTTTAACATTTGGTAATT+AGG | + | chr5.4:61322133-61322152 | None:intergenic | 25.0% |
| !! | TTGAAACCTATTGTTGTTAT+TGG | - | chr5.4:61320180-61320199 | MS.gene49205:intron | 25.0% |
| !! | TTGCCAAATTAGTTTGAATT+AGG | + | chr5.4:61322615-61322634 | None:intergenic | 25.0% |
| !!! | AACTACTTGATGATGTTTTA+AGG | + | chr5.4:61320161-61320180 | None:intergenic | 25.0% |
| !!! | ATTAATATGAAGGTATTGTG+TGG | - | chr5.4:61323520-61323539 | MS.gene49205:intron | 25.0% |
| AACAAAGTCAAGAAGTCATT+GGG | - | chr5.4:61322509-61322528 | MS.gene49205:intron | 30.0% | |
| AAGGCTATTGTGATTATTGT+TGG | + | chr5.4:61320142-61320161 | None:intergenic | 30.0% | |
| AATACCTTCACTAAATTCCA+AGG | + | chr5.4:61322537-61322556 | None:intergenic | 30.0% | |
| AATCAATTCAAGATACCGAT+GGG | + | chr5.4:61323177-61323196 | None:intergenic | 30.0% | |
| AATGAAAAGTTACAGAAAGG+TGG | + | chr5.4:61323692-61323711 | None:intergenic | 30.0% | |
| AATTAGGATCAAATGGAGAA+TGG | - | chr5.4:61320657-61320676 | MS.gene49205:intron | 30.0% | |
| ACGATAAAGCTAGAGTTATA+AGG | - | chr5.4:61324388-61324407 | MS.gene49205:CDS | 30.0% | |
| ACTATAAACAGTAAGAATGG+AGG | + | chr5.4:61321518-61321537 | None:intergenic | 30.0% | |
| AGGATGAAGATAATATTACC+AGG | + | chr5.4:61323263-61323282 | None:intergenic | 30.0% | |
| AGTTTCACAAATGTATACTC+TGG | + | chr5.4:61321927-61321946 | None:intergenic | 30.0% | |
| ATGCTTACTGTCTTTCAAAA+TGG | - | chr5.4:61321278-61321297 | MS.gene49205:intron | 30.0% | |
| ATTAAAGCTGCTATCTCTAA+GGG | - | chr5.4:61321868-61321887 | MS.gene49205:intron | 30.0% | |
| ATTATTAGGACAGAGACAAA+AGG | - | chr5.4:61322801-61322820 | MS.gene49205:intron | 30.0% | |
| CAAAACAATTCATACTGAGA+AGG | + | chr5.4:61323851-61323870 | None:intergenic | 30.0% | |
| CAGAAAATGAAGAGACAAAA+AGG | + | chr5.4:61323283-61323302 | None:intergenic | 30.0% | |
| CTGTAAACTACAATAACTAC+TGG | + | chr5.4:61324328-61324347 | None:intergenic | 30.0% | |
| GCAAAATTAAGATATGGAAG+AGG | + | chr5.4:61320265-61320284 | None:intergenic | 30.0% | |
| GCTACAATTGTATTTACTGT+AGG | + | chr5.4:61324207-61324226 | None:intergenic | 30.0% | |
| GGGTCATATAGACAAAATTT+CGG | - | chr5.4:61322693-61322712 | MS.gene49205:CDS | 30.0% | |
| TAGAGTTATAAGGACCAAAA+CGG | - | chr5.4:61324398-61324417 | MS.gene49205:CDS | 30.0% | |
| TGATGAATGTAGTGATTTCT+TGG | - | chr5.4:61322404-61322423 | MS.gene49205:intron | 30.0% | |
| TGCTAACAGTAATTACTAAC+AGG | + | chr5.4:61320900-61320919 | None:intergenic | 30.0% | |
| TTAAGATGTTTAGCCAAACA+AGG | - | chr5.4:61322107-61322126 | MS.gene49205:CDS | 30.0% | |
| TTATTAGGACAGAGACAAAA+GGG | - | chr5.4:61322802-61322821 | MS.gene49205:intron | 30.0% | |
| TTCTTCACTAGAATTTACTG+CGG | - | chr5.4:61323102-61323121 | MS.gene49205:intron | 30.0% | |
| TTTGTCTCTGTCCTAATAAT+CGG | + | chr5.4:61322801-61322820 | None:intergenic | 30.0% | |
| ! | ATCGAATACTTTTGATGTAG+TGG | - | chr5.4:61320386-61320405 | MS.gene49205:intron | 30.0% |
| ! | CAATAATTCTGAAGATGACT+GGG | - | chr5.4:61322434-61322453 | MS.gene49205:intron | 30.0% |
| ! | GATGAAGTTTTCCGATTATT+AGG | - | chr5.4:61322787-61322806 | MS.gene49205:intron | 30.0% |
| ! | TAAAACCTTTTACGCGAATT+AGG | - | chr5.4:61320641-61320660 | MS.gene49205:intron | 30.0% |
| ! | TCAATAATTCTGAAGATGAC+TGG | - | chr5.4:61322433-61322452 | MS.gene49205:intron | 30.0% |
| ! | TCAGTATTTTACTGTCCTTT+TGG | - | chr5.4:61322951-61322970 | MS.gene49205:intron | 30.0% |
| ! | TGATTCAGCAAATTTGAAAC+AGG | + | chr5.4:61323217-61323236 | None:intergenic | 30.0% |
| ! | TTACTGTTAGCAGTTTTTGT+TGG | - | chr5.4:61320908-61320927 | MS.gene49205:intron | 30.0% |
| !! | GATTTCAGATATGTTGATTC+TGG | - | chr5.4:61322375-61322394 | MS.gene49205:intron | 30.0% |
| !! | TACAAAGTGTTGTGAAATAG+CGG | - | chr5.4:61321413-61321432 | MS.gene49205:intron | 30.0% |
| !! | TATTAGGTGTTGATTCAACT+TGG | - | chr5.4:61321684-61321703 | MS.gene49205:intron | 30.0% |
| !! | TGTTTCAGGTTTGTAATTTG+TGG | - | chr5.4:61321796-61321815 | MS.gene49205:intron | 30.0% |
| !! | TTACTTTTCCTCCGTATATT+AGG | - | chr5.4:61321668-61321687 | MS.gene49205:intron | 30.0% |
| !!! | ATGGCGTAGTAGTTTTTTTA+TGG | - | chr5.4:61320676-61320695 | MS.gene49205:intron | 30.0% |
| !!! | CGTAGTAGTTTTTTTATGGA+AGG | - | chr5.4:61320680-61320699 | MS.gene49205:intron | 30.0% |
| AAAAAAAGTTCTGCAACAGC+AGG | + | chr5.4:61320622-61320641 | None:intergenic | 35.0% | |
| AATCAACACCTAATATACGG+AGG | + | chr5.4:61321679-61321698 | None:intergenic | 35.0% | |
| ACAAAGTCAAGAAGTCATTG+GGG | - | chr5.4:61322510-61322529 | MS.gene49205:intron | 35.0% | |
| ACCTCATAATCCATCAAATC+TGG | + | chr5.4:61323455-61323474 | None:intergenic | 35.0% | |
| AGCTAGATATGCACTTGAAA+TGG | - | chr5.4:61321203-61321222 | MS.gene49205:intron | 35.0% | |
| ATAGTACTGTCATTCTCACT+TGG | + | chr5.4:61323362-61323381 | None:intergenic | 35.0% | |
| ATCAATTCAAGATACCGATG+GGG | + | chr5.4:61323176-61323195 | None:intergenic | 35.0% | |
| CAAAGAAGAAGAAGAAAGAG+AGG | + | chr5.4:61320103-61320122 | None:intergenic | 35.0% | |
| CAACATAATGCGTAATGAGT+AGG | + | chr5.4:61322182-61322201 | None:intergenic | 35.0% | |
| CAATCAATTCAAGATACCGA+TGG | + | chr5.4:61323178-61323197 | None:intergenic | 35.0% | |
| CATTAAAGCTGCTATCTCTA+AGG | - | chr5.4:61321867-61321886 | MS.gene49205:intron | 35.0% | |
| CTGCTCCTTAATAATTCCAT+GGG | - | chr5.4:61320713-61320732 | MS.gene49205:intron | 35.0% | |
| CTTATTTCCTTAAACTCTCC+AGG | - | chr5.4:61321993-61322012 | MS.gene49205:CDS | 35.0% | |
| CTTGGAGATATATTAGATCG+AGG | - | chr5.4:61321702-61321721 | MS.gene49205:intron | 35.0% | |
| GAAAGTTTCTGTGAACAGAA+TGG | - | chr5.4:61321027-61321046 | MS.gene49205:CDS | 35.0% | |
| GAACAAAGTCAAGAAGTCAT+TGG | - | chr5.4:61322508-61322527 | MS.gene49205:intron | 35.0% | |
| GACATTTCCTTAAGCATTCT+TGG | - | chr5.4:61324002-61324021 | MS.gene49205:intron | 35.0% | |
| GATAAACAAGCGAAATCGAA+AGG | - | chr5.4:61321765-61321784 | MS.gene49205:intron | 35.0% | |
| GCTGAAAATGGACATATCAT+AGG | + | chr5.4:61321974-61321993 | None:intergenic | 35.0% | |
| GGAAGAAACATTTACAGGTT+GGG | - | chr5.4:61322455-61322474 | MS.gene49205:intron | 35.0% | |
| TAGCATAACTGTGACATCAT+AGG | + | chr5.4:61320451-61320470 | None:intergenic | 35.0% | |
| TGAGTAGTTGGAGATTTACA+TGG | - | chr5.4:61321168-61321187 | MS.gene49205:intron | 35.0% | |
| TTACCTCAGGTCTTGAATTA+AGG | + | chr5.4:61324265-61324284 | None:intergenic | 35.0% | |
| TTACGCGAATTAGGATCAAA+TGG | - | chr5.4:61320650-61320669 | MS.gene49205:intron | 35.0% | |
| TTCTGCTTTGTCTAGGTAAA+TGG | - | chr5.4:61322324-61322343 | MS.gene49205:intron | 35.0% | |
| TTGATCCTAATTCGCGTAAA+AGG | + | chr5.4:61320649-61320668 | None:intergenic | 35.0% | |
| TTGCAGTGTTTCTTCAAGAA+TGG | + | chr5.4:61323914-61323933 | None:intergenic | 35.0% | |
| TTTCTCTAATTTCAGAAGCC+TGG | - | chr5.4:61323242-61323261 | MS.gene49205:CDS | 35.0% | |
| ! | ATGATTCTGAAAAACCAAGC+TGG | + | chr5.4:61320809-61320828 | None:intergenic | 35.0% |
| ! | TAAATGGTTCTGCTTTGTCT+AGG | - | chr5.4:61322317-61322336 | MS.gene49205:intron | 35.0% |
| ! | TCATTTTCTGCAGTTGCATA+TGG | - | chr5.4:61323293-61323312 | MS.gene49205:intron | 35.0% |
| ! | TTTAGCTTAAACAAGGGAGA+GGG | + | chr5.4:61323571-61323590 | None:intergenic | 35.0% |
| !! | ACCAGATTTGATGGATTATG+AGG | - | chr5.4:61323451-61323470 | MS.gene49205:intron | 35.0% |
| !! | ATGACAGTGTTGTTTGGAAT+CGG | - | chr5.4:61323411-61323430 | MS.gene49205:intron | 35.0% |
| !! | CGTCTATAATTTCTAGAACC+TGG | + | chr5.4:61324371-61324390 | None:intergenic | 35.0% |
| !! | CTGTTTGTTTTCTGAGTAGT+TGG | - | chr5.4:61321156-61321175 | MS.gene49205:CDS | 35.0% |
| !! | GATGGATTATGAGGTTAAAC+AGG | - | chr5.4:61323460-61323479 | MS.gene49205:intron | 35.0% |
| !! | GGCTTCTGAAATTAGAGAAA+AGG | + | chr5.4:61323242-61323261 | None:intergenic | 35.0% |
| !! | TGTTTTGAGCTAAGGGTAAA+AGG | + | chr5.4:61323138-61323157 | None:intergenic | 35.0% |
| !! | TTATTCCAGCACGTTGATTT+GGG | + | chr5.4:61322667-61322686 | None:intergenic | 35.0% |
| !! | TTCAGATATGTTGATTCTGG+AGG | - | chr5.4:61322378-61322397 | MS.gene49205:intron | 35.0% |
| !! | TTTGGTAATTAGGCCTTGTT+TGG | + | chr5.4:61322123-61322142 | None:intergenic | 35.0% |
| !!! | AAATGCCAGATGCTTTTTCT+AGG | - | chr5.4:61324125-61324144 | MS.gene49205:intron | 35.0% |
| !!! | AGTTTTTGTTGGCTTTGCTT+TGG | - | chr5.4:61320919-61320938 | MS.gene49205:intron | 35.0% |
| !!! | TTTTAGCTTAAACAAGGGAG+AGG | + | chr5.4:61323572-61323591 | None:intergenic | 35.0% |
| AAACAAGCGAAATCGAAAGG+TGG | - | chr5.4:61321768-61321787 | MS.gene49205:intron | 40.0% | |
| AAACCATGAGACCATGAATG+TGG | - | chr5.4:61322347-61322366 | MS.gene49205:intron | 40.0% | |
| AACACTGTCATAACCTCTAG+TGG | + | chr5.4:61323402-61323421 | None:intergenic | 40.0% | |
| AACCTCTAGTGGCAATGAAA+GGG | + | chr5.4:61323391-61323410 | None:intergenic | 40.0% | |
| AACGTGCTGGAATAAGTTAC+GGG | - | chr5.4:61322672-61322691 | MS.gene49205:intron | 40.0% | |
| AAGAGACTCACCAGATTTGA+TGG | - | chr5.4:61323442-61323461 | MS.gene49205:intron | 40.0% | |
| AAGCTATCCTGGAGAGTTTA+AGG | + | chr5.4:61322003-61322022 | None:intergenic | 40.0% | |
| AATATAGCACAGTAGCGTTG+CGG | - | chr5.4:61321437-61321456 | MS.gene49205:intron | 40.0% | |
| ACAACAATAGTACACCGCTA+AGG | - | chr5.4:61322151-61322170 | MS.gene49205:intron | 40.0% | |
| ACAGTAAGAATGGAGGCTAA+TGG | + | chr5.4:61321511-61321530 | None:intergenic | 40.0% | |
| ACATACTCCTCAAACTGTTG+GGG | - | chr5.4:61323963-61323982 | MS.gene49205:intron | 40.0% | |
| AGATATGCACTTGAAATGGC+TGG | - | chr5.4:61321207-61321226 | MS.gene49205:intron | 40.0% | |
| AGCAACTATGCGCAATATCA+AGG | + | chr5.4:61320420-61320439 | None:intergenic | 40.0% | |
| AGTCCTTAATTCAAGACCTG+AGG | - | chr5.4:61324259-61324278 | MS.gene49205:CDS | 40.0% | |
| ATGAGACCATGAATGTGGAA+GGG | - | chr5.4:61322352-61322371 | MS.gene49205:intron | 40.0% | |
| ATGAGTAGGCATATCCTTAG+CGG | + | chr5.4:61322168-61322187 | None:intergenic | 40.0% | |
| CAACGTGCTGGAATAAGTTA+CGG | - | chr5.4:61322671-61322690 | MS.gene49205:intron | 40.0% | |
| CAAGACCTGAGGTAAATCAA+AGG | - | chr5.4:61324270-61324289 | MS.gene49205:CDS | 40.0% | |
| CAATCTGTGATTGAACACTG+GGG | - | chr5.4:61321485-61321504 | MS.gene49205:intron | 40.0% | |
| CAATTTACCCCAACAGTTTG+AGG | + | chr5.4:61323973-61323992 | None:intergenic | 40.0% | |
| CATAAACTAGTATGCCAGCT+TGG | - | chr5.4:61320792-61320811 | MS.gene49205:intron | 40.0% | |
| CCATGGAATTATTAAGGAGC+AGG | + | chr5.4:61320715-61320734 | None:intergenic | 40.0% | |
| CCTGCTCCTTAATAATTCCA+TGG | - | chr5.4:61320712-61320731 | MS.gene49205:intron | 40.0% | |
| CTAGGTCAGTTAGTGCTTTA+TGG | - | chr5.4:61324143-61324162 | MS.gene49205:intron | 40.0% | |
| CTCAAACTGTTGGGGTAAAT+TGG | - | chr5.4:61323971-61323990 | MS.gene49205:intron | 40.0% | |
| GAACATGTGAAGACTCATGT+AGG | + | chr5.4:61324296-61324315 | None:intergenic | 40.0% | |
| GACATACTCCTCAAACTGTT+GGG | - | chr5.4:61323962-61323981 | MS.gene49205:intron | 40.0% | |
| GACTGGGAAGAAACATTTAC+AGG | - | chr5.4:61322450-61322469 | MS.gene49205:intron | 40.0% | |
| GATATTGCGCATAGTTGCTA+TGG | - | chr5.4:61320421-61320440 | MS.gene49205:intron | 40.0% | |
| GCAATCTGTGATTGAACACT+GGG | - | chr5.4:61321484-61321503 | MS.gene49205:intron | 40.0% | |
| GGGAAGAAACATTTACAGGT+TGG | - | chr5.4:61322454-61322473 | MS.gene49205:intron | 40.0% | |
| GGGTCACCAATAACAACAAT+AGG | + | chr5.4:61320189-61320208 | None:intergenic | 40.0% | |
| GTCAGTTAGTGCTTTATGGA+TGG | - | chr5.4:61324147-61324166 | MS.gene49205:intron | 40.0% | |
| GTGTTGTGTTCTTATTCTCC+AGG | - | chr5.4:61324350-61324369 | MS.gene49205:CDS | 40.0% | |
| TAAACTCTCCAGGATAGCTT+AGG | - | chr5.4:61322003-61322022 | MS.gene49205:CDS | 40.0% | |
| TAACCTCTAGTGGCAATGAA+AGG | + | chr5.4:61323392-61323411 | None:intergenic | 40.0% | |
| TAGTGGCAATGAAAGGGATT+TGG | + | chr5.4:61323385-61323404 | None:intergenic | 40.0% | |
| TCTTGAATTAAGGACTCCAC+TGG | + | chr5.4:61324255-61324274 | None:intergenic | 40.0% | |
| TGATACTGTCACAATTGCAG+TGG | - | chr5.4:61320571-61320590 | MS.gene49205:intron | 40.0% | |
| TGCAATCTGTGATTGAACAC+TGG | - | chr5.4:61321483-61321502 | MS.gene49205:intron | 40.0% | |
| TGCACTCAAGGTTAATGACT+GGG | - | chr5.4:61322894-61322913 | MS.gene49205:intron | 40.0% | |
| TTAGCTTAAACAAGGGAGAG+GGG | + | chr5.4:61323570-61323589 | None:intergenic | 40.0% | |
| TTCTGCAGTTGCATATGGTT+TGG | - | chr5.4:61323298-61323317 | MS.gene49205:intron | 40.0% | |
| TTGCACTCAAGGTTAATGAC+TGG | - | chr5.4:61322893-61322912 | MS.gene49205:intron | 40.0% | |
| TTTATCCAATGATCGCAGCA+AGG | + | chr5.4:61321751-61321770 | None:intergenic | 40.0% | |
| ! | CAAGCTGGCATACTAGTTTA+TGG | + | chr5.4:61320794-61320813 | None:intergenic | 40.0% |
| ! | CTTATTCCAGCACGTTGATT+TGG | + | chr5.4:61322668-61322687 | None:intergenic | 40.0% |
| ! | GAGCAGAAACAAAAGTTGGT+GGG | + | chr5.4:61320209-61320228 | None:intergenic | 40.0% |
| ! | GAGGTTATGACAGTGTTGTT+TGG | - | chr5.4:61323405-61323424 | MS.gene49205:intron | 40.0% |
| ! | TTCACTGTATCTGTCCGTTT+TGG | + | chr5.4:61324415-61324434 | None:intergenic | 40.0% |
| ! | TTCAGTTCAGCTTTAACCCA+TGG | + | chr5.4:61320732-61320751 | None:intergenic | 40.0% |
| !! | ACTGACCTAGAAAAAGCATC+TGG | + | chr5.4:61324133-61324152 | None:intergenic | 40.0% |
| !! | AGCTCAACTGTTTTGAGCTA+AGG | + | chr5.4:61323146-61323165 | None:intergenic | 40.0% |
| !! | GCTCAACTGTTTTGAGCTAA+GGG | + | chr5.4:61323145-61323164 | None:intergenic | 40.0% |
| !! | TGAACAAAGAAGTGTCTGAG+TGG | - | chr5.4:61323327-61323346 | MS.gene49205:intron | 40.0% |
| !!! | AGTCACGAAGCTAGTTTTCA+GGG | + | chr5.4:61323669-61323688 | None:intergenic | 40.0% |
| AATGACTGGGTCTTCTGTCA+TGG | - | chr5.4:61322907-61322926 | MS.gene49205:intron | 45.0% | |
| ACGTGCTGGAATAAGTTACG+GGG | - | chr5.4:61322673-61322692 | MS.gene49205:intron | 45.0% | |
| ATCCCTTTCATTGCCACTAG+AGG | - | chr5.4:61323386-61323405 | MS.gene49205:intron | 45.0% | |
| CAGATACAGTGAACTTCAGG+CGG | - | chr5.4:61324422-61324441 | MS.gene49205:CDS | 45.0% | |
| CATGAGACCATGAATGTGGA+AGG | - | chr5.4:61322351-61322370 | MS.gene49205:intron | 45.0% | |
| CCAGGAGCAGAAACAAAAGT+TGG | + | chr5.4:61320213-61320232 | None:intergenic | 45.0% | |
| CTTCCACATTCATGGTCTCA+TGG | + | chr5.4:61322353-61322372 | None:intergenic | 45.0% | |
| GAAATCCCCTTCCACATTCA+TGG | + | chr5.4:61322361-61322380 | None:intergenic | 45.0% | |
| GGACAGATACAGTGAACTTC+AGG | - | chr5.4:61324419-61324438 | MS.gene49205:CDS | 45.0% | |
| GGACAGTAAAATACTGACCG+TGG | + | chr5.4:61322948-61322967 | None:intergenic | 45.0% | |
| GGACATACTCCTCAAACTGT+TGG | - | chr5.4:61323961-61323980 | MS.gene49205:intron | 45.0% | |
| GGAGCAGAAACAAAAGTTGG+TGG | + | chr5.4:61320210-61320229 | None:intergenic | 45.0% | |
| GGGACCTTGGAATTTAGTGA+AGG | - | chr5.4:61322530-61322549 | MS.gene49205:intron | 45.0% | |
| GTAAAATACTGACCGTGGTG+AGG | + | chr5.4:61322943-61322962 | None:intergenic | 45.0% | |
| GTAGATGTTGGAATGTCCAG+TGG | - | chr5.4:61324236-61324255 | MS.gene49205:CDS | 45.0% | |
| TAACTCCCAAATCAACGTGC+TGG | - | chr5.4:61322659-61322678 | MS.gene49205:intron | 45.0% | |
| TCAAGATACCGATGGGGATT+GGG | + | chr5.4:61323170-61323189 | None:intergenic | 45.0% | |
| TCAGGGAAAGGACTACATGT+CGG | + | chr5.4:61323652-61323671 | None:intergenic | 45.0% | |
| TGAGACCATGAATGTGGAAG+GGG | - | chr5.4:61322353-61322372 | MS.gene49205:intron | 45.0% | |
| TTCAAGATACCGATGGGGAT+TGG | + | chr5.4:61323171-61323190 | None:intergenic | 45.0% | |
| TTGCCCGATCAATCCTCTTT+CGG | - | chr5.4:61322830-61322849 | MS.gene49205:intron | 45.0% | |
| TTGCGTTTCCTAAGCTATCC+TGG | + | chr5.4:61322014-61322033 | None:intergenic | 45.0% | |
| ! | ACTGCAAGCAGTTGATGCTA+AGG | - | chr5.4:61323927-61323946 | MS.gene49205:intron | 45.0% |
| ! | AGCAGTTGATGCTAAGGCAA+TGG | - | chr5.4:61323933-61323952 | MS.gene49205:intron | 45.0% |
| ! | AGTTGATGCTAAGGCAATGG+TGG | - | chr5.4:61323936-61323955 | MS.gene49205:intron | 45.0% |
| ! | CAGTTGCATATGGTTTGGAG+CGG | - | chr5.4:61323303-61323322 | MS.gene49205:intron | 45.0% |
| ! | GTAGGCCTTTGATTTACCTC+AGG | + | chr5.4:61324278-61324297 | None:intergenic | 45.0% |
| !! | AGCACGTTGATTTGGGAGTT+AGG | + | chr5.4:61322660-61322679 | None:intergenic | 45.0% |
| !! | GAAAGAGAGGTGTTGTTACG+AGG | + | chr5.4:61320090-61320109 | None:intergenic | 45.0% |
| !! | GGGTTGATGTATCTGAGAAG+TGG | - | chr5.4:61322475-61322494 | MS.gene49205:intron | 45.0% |
| !!! | CCAACTTTTGTTTCTGCTCC+TGG | - | chr5.4:61320210-61320229 | MS.gene49205:CDS | 45.0% |
| !!! | CGAAGCTAGTTTTCAGGGAA+AGG | + | chr5.4:61323664-61323683 | None:intergenic | 45.0% |
| !!! | GAGTCACGAAGCTAGTTTTC+AGG | + | chr5.4:61323670-61323689 | None:intergenic | 45.0% |
| AGCATATGGCGCGTAGATGT+TGG | - | chr5.4:61324224-61324243 | MS.gene49205:intron | 50.0% | |
| AGGCCGAAAGAGGATTGATC+GGG | + | chr5.4:61322836-61322855 | None:intergenic | 50.0% | |
| CAAGAAGTCATTGGGGACCT+TGG | - | chr5.4:61322517-61322536 | MS.gene49205:intron | 50.0% | |
| CAGGCCGAAAGAGGATTGAT+CGG | + | chr5.4:61322837-61322856 | None:intergenic | 50.0% | |
| CGAGGATGAGGATGAGAAGA+TGG | + | chr5.4:61320072-61320091 | None:intergenic | 50.0% | |
| GAAAGGTGGAGCTGTGTTTC+AGG | - | chr5.4:61321782-61321801 | MS.gene49205:intron | 50.0% | |
| GATGCTAAGGCAATGGTGGT+GGG | - | chr5.4:61323940-61323959 | MS.gene49205:intron | 50.0% | |
| GATGGTCAAGACTTGTGGAC+TGG | - | chr5.4:61321243-61321262 | MS.gene49205:intron | 50.0% | |
| GCTCTGATGGTCAAGACTTG+TGG | - | chr5.4:61321238-61321257 | MS.gene49205:intron | 50.0% | |
| GGATGAGAAGATGGTGAGAG+TGG | + | chr5.4:61320063-61320082 | None:intergenic | 50.0% | |
| TGATGCTAAGGCAATGGTGG+TGG | - | chr5.4:61323939-61323958 | MS.gene49205:intron | 50.0% | |
| TTGAGCTACCCAATCCCCAT+CGG | - | chr5.4:61323159-61323178 | MS.gene49205:intron | 50.0% | |
| !! | AAGGCATGGTGTTGCACTCA+AGG | - | chr5.4:61322882-61322901 | MS.gene49205:intron | 50.0% |
| !! | GAGGTGTTGTTACGAGGATG+AGG | + | chr5.4:61320084-61320103 | None:intergenic | 50.0% |
| ACTGACCGTGGTGAGGAAGA+AGG | + | chr5.4:61322936-61322955 | None:intergenic | 55.0% | |
| CAATCCTCTTTCGGCCTGGT+GGG | - | chr5.4:61322839-61322858 | MS.gene49205:intron | 55.0% | |
| CCAATGATCGCAGCAAGGAC+AGG | + | chr5.4:61321746-61321765 | None:intergenic | 55.0% | |
| CCTGTCCTTGCTGCGATCAT+TGG | - | chr5.4:61321743-61321762 | MS.gene49205:intron | 55.0% | |
| CGATCAATCCTCTTTCGGCC+TGG | - | chr5.4:61322835-61322854 | MS.gene49205:intron | 55.0% | |
| GACTGGGTCTTCTGTCATGG+CGG | - | chr5.4:61322910-61322929 | MS.gene49205:intron | 55.0% | |
| TCAATCCTCTTTCGGCCTGG+TGG | - | chr5.4:61322838-61322857 | MS.gene49205:intron | 55.0% | |
| ! | GCTGGTGTGTTGAGCTCTGA+TGG | - | chr5.4:61321225-61321244 | MS.gene49205:intron | 55.0% |
| !! | GGTCAAGACTTGTGGACTGG+TGG | - | chr5.4:61321246-61321265 | MS.gene49205:intron | 55.0% |
| CACTGGCGTGTGAGCTTGCA+AGG | - | chr5.4:61322863-61322882 | MS.gene49205:intron | 60.0% | |
| CCAGCGAGAATAGTGCGACC+AGG | + | chr5.4:61320231-61320250 | None:intergenic | 60.0% | |
| CCTGGTCGCACTATTCTCGC+TGG | - | chr5.4:61320228-61320247 | MS.gene49205:CDS | 60.0% | |
| CTTGCAAGCTCACACGCCAG+TGG | + | chr5.4:61322865-61322884 | None:intergenic | 60.0% | |
| GCGTGTGAGCTTGCAAGGCA+TGG | - | chr5.4:61322868-61322887 | MS.gene49205:intron | 60.0% | |
| GGCGGCCTTCTTCCTCACCA+CGG | - | chr5.4:61322928-61322947 | MS.gene49205:intron | 65.0% | |
| GTGGCCCACCAGGCCGAAAG+AGG | + | chr5.4:61322846-61322865 | None:intergenic | 70.0% | |
| TCACACGCCAGTGGCCCACC+AGG | + | chr5.4:61322856-61322875 | None:intergenic | 70.0% | |
| ! | CTTTCGGCCTGGTGGGCCAC+TGG | - | chr5.4:61322846-61322865 | MS.gene49205:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 61320027 | 61324458 | 61320027 | ID=MS.gene49205 |
| chr5.4 | mRNA | 61320027 | 61324458 | 61320027 | ID=MS.gene49205.t1;Parent=MS.gene49205 |
| chr5.4 | exon | 61324236 | 61324458 | 61324236 | ID=MS.gene49205.t1.exon1;Parent=MS.gene49205.t1 |
| chr5.4 | CDS | 61324236 | 61324458 | 61324236 | ID=cds.MS.gene49205.t1;Parent=MS.gene49205.t1 |
| chr5.4 | exon | 61323210 | 61323310 | 61323210 | ID=MS.gene49205.t1.exon2;Parent=MS.gene49205.t1 |
| chr5.4 | CDS | 61323210 | 61323310 | 61323210 | ID=cds.MS.gene49205.t1;Parent=MS.gene49205.t1 |
| chr5.4 | exon | 61322682 | 61322795 | 61322682 | ID=MS.gene49205.t1.exon3;Parent=MS.gene49205.t1 |
| chr5.4 | CDS | 61322682 | 61322795 | 61322682 | ID=cds.MS.gene49205.t1;Parent=MS.gene49205.t1 |
| chr5.4 | exon | 61321934 | 61322146 | 61321934 | ID=MS.gene49205.t1.exon4;Parent=MS.gene49205.t1 |
| chr5.4 | CDS | 61321934 | 61322146 | 61321934 | ID=cds.MS.gene49205.t1;Parent=MS.gene49205.t1 |
| chr5.4 | exon | 61321536 | 61321671 | 61321536 | ID=MS.gene49205.t1.exon5;Parent=MS.gene49205.t1 |
| chr5.4 | CDS | 61321536 | 61321671 | 61321536 | ID=cds.MS.gene49205.t1;Parent=MS.gene49205.t1 |
| chr5.4 | exon | 61321004 | 61321179 | 61321004 | ID=MS.gene49205.t1.exon6;Parent=MS.gene49205.t1 |
| chr5.4 | CDS | 61321004 | 61321179 | 61321004 | ID=cds.MS.gene49205.t1;Parent=MS.gene49205.t1 |
| chr5.4 | exon | 61320493 | 61320581 | 61320493 | ID=MS.gene49205.t1.exon7;Parent=MS.gene49205.t1 |
| chr5.4 | CDS | 61320493 | 61320581 | 61320493 | ID=cds.MS.gene49205.t1;Parent=MS.gene49205.t1 |
| chr5.4 | exon | 61320205 | 61320274 | 61320205 | ID=MS.gene49205.t1.exon8;Parent=MS.gene49205.t1 |
| chr5.4 | CDS | 61320205 | 61320274 | 61320205 | ID=cds.MS.gene49205.t1;Parent=MS.gene49205.t1 |
| chr5.4 | exon | 61320027 | 61320113 | 61320027 | ID=MS.gene49205.t1.exon9;Parent=MS.gene49205.t1 |
| chr5.4 | CDS | 61320027 | 61320113 | 61320027 | ID=cds.MS.gene49205.t1;Parent=MS.gene49205.t1 |
| Gene Sequence |
| Protein sequence |
