Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50035.t1 | XP_013465491.1 | 83.2 | 256 | 19 | 3 | 1 | 234 | 1 | 254 | 8.00E-106 | 393.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50035.t1 | P74327 | 46.3 | 108 | 53 | 2 | 101 | 208 | 30 | 132 | 6.0e-17 | 89.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50035.t1 | A0A072VD47 | 83.2 | 256 | 19 | 3 | 1 | 234 | 1 | 254 | 5.8e-106 | 393.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050060 | MS.gene50035 | 0.825391 | 4.81E-54 | -1.69E-46 |
| MS.gene050406 | MS.gene50035 | 0.813684 | 2.26E-51 | -1.69E-46 |
| MS.gene050464 | MS.gene50035 | 0.810414 | 1.17E-50 | -1.69E-46 |
| MS.gene050642 | MS.gene50035 | 0.810278 | 1.25E-50 | -1.69E-46 |
| MS.gene051171 | MS.gene50035 | 0.805391 | 1.37E-49 | -1.69E-46 |
| MS.gene051983 | MS.gene50035 | 0.801952 | 7.06E-49 | -1.69E-46 |
| MS.gene052077 | MS.gene50035 | 0.818308 | 2.10E-52 | -1.69E-46 |
| MS.gene052188 | MS.gene50035 | 0.836845 | 7.37E-57 | -1.69E-46 |
| MS.gene052253 | MS.gene50035 | 0.817914 | 2.58E-52 | -1.69E-46 |
| MS.gene052340 | MS.gene50035 | 0.844289 | 8.29E-59 | -1.69E-46 |
| MS.gene053330 | MS.gene50035 | 0.8087 | 2.72E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene50035 | 0.821394 | 4.13E-53 | -1.69E-46 |
| MS.gene054349 | MS.gene50035 | 0.838761 | 2.37E-57 | -1.69E-46 |
| MS.gene054930 | MS.gene50035 | 0.801397 | 9.18E-49 | -1.69E-46 |
| MS.gene05553 | MS.gene50035 | 0.832962 | 7.01E-56 | -1.69E-46 |
| MS.gene056899 | MS.gene50035 | -0.806865 | 6.68E-50 | -1.69E-46 |
| MS.gene057749 | MS.gene50035 | 0.824302 | 8.69E-54 | -1.69E-46 |
| MS.gene057823 | MS.gene50035 | 0.814644 | 1.39E-51 | -1.69E-46 |
| MS.gene058002 | MS.gene50035 | 0.838748 | 2.39E-57 | -1.69E-46 |
| MS.gene058142 | MS.gene50035 | 0.841497 | 4.58E-58 | -1.69E-46 |
| MS.gene058276 | MS.gene50035 | 0.820294 | 7.40E-53 | -1.69E-46 |
| MS.gene05886 | MS.gene50035 | 0.805871 | 1.08E-49 | -1.69E-46 |
| MS.gene058928 | MS.gene50035 | 0.805958 | 1.04E-49 | -1.69E-46 |
| MS.gene059247 | MS.gene50035 | 0.812232 | 4.70E-51 | -1.69E-46 |
| MS.gene059285 | MS.gene50035 | 0.844544 | 7.08E-59 | -1.69E-46 |
| MS.gene059597 | MS.gene50035 | 0.846225 | 2.48E-59 | -1.69E-46 |
| MS.gene05984 | MS.gene50035 | 0.815743 | 7.90E-52 | -1.69E-46 |
| MS.gene059894 | MS.gene50035 | 0.829414 | 5.22E-55 | -1.69E-46 |
| MS.gene059899 | MS.gene50035 | 0.809662 | 1.69E-50 | -1.69E-46 |
| MS.gene060407 | MS.gene50035 | 0.850683 | 1.45E-60 | -1.69E-46 |
| MS.gene061049 | MS.gene50035 | 0.846072 | 2.73E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50035.t1 | MTR_2g100220 | 82.031 | 256 | 22 | 2 | 1 | 234 | 1 | 254 | 4.99e-147 | 410 |
| MS.gene50035.t1 | MTR_2g100220 | 81.600 | 250 | 22 | 2 | 1 | 228 | 1 | 248 | 1.51e-142 | 400 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50035.t1 | AT1G55140 | 56.164 | 219 | 81 | 1 | 22 | 225 | 10 | 228 | 5.75e-82 | 245 |
| MS.gene50035.t1 | AT3G13740 | 60.000 | 215 | 74 | 1 | 23 | 225 | 10 | 224 | 8.33e-82 | 245 |
| MS.gene50035.t1 | AT3G13740 | 60.000 | 215 | 74 | 1 | 23 | 225 | 10 | 224 | 7.31e-81 | 243 |
| MS.gene50035.t1 | AT3G13740 | 71.812 | 149 | 42 | 0 | 77 | 225 | 1 | 149 | 1.27e-71 | 216 |
| MS.gene50035.t1 | AT3G13740 | 59.563 | 183 | 62 | 1 | 23 | 193 | 10 | 192 | 7.97e-67 | 205 |
| MS.gene50035.t1 | AT3G13740 | 54.430 | 158 | 60 | 1 | 23 | 168 | 10 | 167 | 1.55e-51 | 165 |
| MS.gene50035.t1 | AT1G55140 | 51.572 | 159 | 62 | 1 | 22 | 165 | 10 | 168 | 2.34e-49 | 159 |
| MS.gene50035.t1 | AT3G13740 | 54.225 | 142 | 53 | 1 | 23 | 152 | 10 | 151 | 6.45e-44 | 145 |
Find 39 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAACACGATGAAACCTATT+TGG | 0.206219 | 2.3:+3522896 | MS.gene50035:CDS |
| CTCGTCAATGCCTTTGAATT+TGG | 0.238218 | 2.3:+3526305 | MS.gene50035:CDS |
| CTAGGAGCGTTGCGGTTATA+AGG | 0.245759 | 2.3:-3522729 | None:intergenic |
| GCTGCTACCTTAGCTTATAT+TGG | 0.304372 | 2.3:+3522978 | MS.gene50035:CDS |
| AGAGAAGGAGATTGTGGTTT+TGG | 0.333213 | 2.3:-3522768 | None:intergenic |
| GAACGAGGTTTAACGACTTT+AGG | 0.348737 | 2.3:-3522945 | None:intergenic |
| CCTATTTGGGATATGATAGA+TGG | 0.357513 | 2.3:+3522910 | MS.gene50035:CDS |
| CAAGCAAAACTAAGACAAAA+AGG | 0.357900 | 2.3:+3525736 | MS.gene50035:CDS |
| TATTGGTGATTGCATTTATG+AGG | 0.357917 | 2.3:+3522995 | MS.gene50035:CDS |
| CCATCTATCATATCCCAAAT+AGG | 0.385713 | 2.3:-3522910 | None:intergenic |
| GTTTATCTTCTTCATTATCA+TGG | 0.401690 | 2.3:+3522637 | MS.gene50035:CDS |
| TAGGAGCGTTGCGGTTATAA+GGG | 0.424850 | 2.3:-3522728 | None:intergenic |
| AACCAGTAGTAAAAGCTTCA+TGG | 0.429937 | 2.3:+3522688 | MS.gene50035:CDS |
| GTCAATGCCTTTGAATTTGG+AGG | 0.436135 | 2.3:+3526308 | MS.gene50035:CDS |
| TTTCAATTTGGATGAAGAAA+AGG | 0.442453 | 2.3:-3522667 | None:intergenic |
| GAACACGATGAAACCTATTT+GGG | 0.451212 | 2.3:+3522897 | MS.gene50035:CDS |
| GATGAGCTGAACAGTGGATA+AGG | 0.458530 | 2.3:+3526834 | MS.gene50035:CDS |
| TTTGACAAATGTGAATCGCT+TGG | 0.467151 | 2.3:+3526248 | MS.gene50035:CDS |
| TCCTTACGGGTAGAAGGTGC+TGG | 0.475784 | 2.3:-3522798 | None:intergenic |
| ATTGTATTCTTCAATACTCA+AGG | 0.493781 | 2.3:-3524110 | None:intergenic |
| TTTCAGGGATGTTCTTCGAT+GGG | 0.502029 | 2.3:+3525698 | MS.gene50035:intron |
| ATTTCAGGGATGTTCTTCGA+TGG | 0.515754 | 2.3:+3525697 | MS.gene50035:intron |
| ACCAGTAGTAAAAGCTTCAT+GGG | 0.516338 | 2.3:+3522689 | MS.gene50035:CDS |
| ATTAATTCCTCCAAATTCAA+AGG | 0.528573 | 2.3:-3526315 | None:intergenic |
| TTAACGACTTTAGGTGGAGT+TGG | 0.531286 | 2.3:-3522936 | None:intergenic |
| GCAATCACCAATATAAGCTA+AGG | 0.541049 | 2.3:-3522985 | None:intergenic |
| GGTGCTGGTGAAGTGAGAGA+AGG | 0.548993 | 2.3:-3522783 | None:intergenic |
| CGAGGTTTAACGACTTTAGG+TGG | 0.556732 | 2.3:-3522942 | None:intergenic |
| ACGAAATTCATCATCATGCA+AGG | 0.558857 | 2.3:+3522615 | None:intergenic |
| TTCAGGGATGTTCTTCGATG+GGG | 0.583400 | 2.3:+3525699 | MS.gene50035:intron |
| ATTTCTTATCAGATCAAGAG+AGG | 0.597984 | 2.3:+3525002 | MS.gene50035:CDS |
| TATTCTTCAATACTCAAGGG+TGG | 0.605648 | 2.3:-3524106 | None:intergenic |
| TTGTATTCTTCAATACTCAA+GGG | 0.608670 | 2.3:-3524109 | None:intergenic |
| ACATGCAGCTATATGCTCGT+AGG | 0.628628 | 2.3:+3524071 | MS.gene50035:intron |
| GAAGTGAGAGAAGGAGATTG+TGG | 0.633379 | 2.3:-3522774 | None:intergenic |
| AGCGAACAACTGCCATCACA+CGG | 0.636186 | 2.3:-3524135 | None:intergenic |
| TAGACAGATGAGCTGAACAG+TGG | 0.652117 | 2.3:+3526828 | MS.gene50035:intron |
| AGAATACAATGACCGTGTGA+TGG | 0.681673 | 2.3:+3524123 | MS.gene50035:CDS |
| GATGGCAGTTGTTCGCTGTG+AGG | 0.703384 | 2.3:+3524141 | MS.gene50035:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATAGTATTAAAATTAATA+AGG | + | chr2.3:3523509-3523528 | MS.gene50035:intron | 10.0% |
| !!! | AAAAGTTATTTTATTATGAT+TGG | + | chr2.3:3524465-3524484 | MS.gene50035:intron | 10.0% |
| !!! | AAAGTTATTTTATTATGATT+GGG | + | chr2.3:3524466-3524485 | MS.gene50035:intron | 10.0% |
| !! | AAAGTTATACAAATTAGATA+TGG | - | chr2.3:3524412-3524431 | None:intergenic | 15.0% |
| !! | AAGTTATACAAATTAGATAT+GGG | - | chr2.3:3524411-3524430 | None:intergenic | 15.0% |
| !! | AGAAAATATTGTTATCAAAT+AGG | + | chr2.3:3523868-3523887 | MS.gene50035:intron | 15.0% |
| !! | ATTAGAGAATAATAAATACT+AGG | - | chr2.3:3523050-3523069 | None:intergenic | 15.0% |
| !! | ATTTAAATTGAAAACAAAGT+AGG | - | chr2.3:3524189-3524208 | None:intergenic | 15.0% |
| !! | TTAAAAAAGTTAGATAAGTA+AGG | + | chr2.3:3524279-3524298 | MS.gene50035:intron | 15.0% |
| !! | TTTAAATTGAAAACAAAGTA+GGG | - | chr2.3:3524188-3524207 | None:intergenic | 15.0% |
| !! | TTTCAATTTAAATTTACATG+CGG | + | chr2.3:3524196-3524215 | MS.gene50035:intron | 15.0% |
| !!! | ACATTTCTTTAATTTTAAAG+TGG | + | chr2.3:3525877-3525896 | MS.gene50035:intron | 15.0% |
| !!! | TCTAATTTGTATAACTTTAT+AGG | + | chr2.3:3524414-3524433 | MS.gene50035:intron | 15.0% |
| !!! | TTTTGATGAATTTTATTTCA+GGG | + | chr2.3:3525683-3525702 | MS.gene50035:intron | 15.0% |
| !! | AAGATTTACATTTATATCAC+TGG | - | chr2.3:3525839-3525858 | None:intergenic | 20.0% |
| !! | AATAACAAATAAAATCCAAC+AGG | - | chr2.3:3524881-3524900 | None:intergenic | 20.0% |
| !! | AATATCAATTAAGAAACAGA+AGG | - | chr2.3:3524806-3524825 | None:intergenic | 20.0% |
| !! | AATCAAAATCGTAATACAAT+TGG | - | chr2.3:3523703-3523722 | None:intergenic | 20.0% |
| !! | AATGACATAAAATAAAGTAG+AGG | + | chr2.3:3523240-3523259 | MS.gene50035:intron | 20.0% |
| !! | AGAAGAAACTTCATTAAATA+TGG | - | chr2.3:3525087-3525106 | None:intergenic | 20.0% |
| !! | ATAGTTTCAAATAAAAAGCA+CGG | - | chr2.3:3525439-3525458 | None:intergenic | 20.0% |
| !! | ATATCAATTAAGAAACAGAA+GGG | - | chr2.3:3524805-3524824 | None:intergenic | 20.0% |
| !! | CAAAAGGAATGTATATTAAA+TGG | - | chr2.3:3526104-3526123 | None:intergenic | 20.0% |
| !! | CTTCATTAAATATGGAAAAT+AGG | - | chr2.3:3525079-3525098 | None:intergenic | 20.0% |
| !! | GAAAAACTAATGTTAGAATT+GGG | + | chr2.3:3526270-3526289 | MS.gene50035:CDS | 20.0% |
| !! | TAAGAATAGAATTGTAAAGA+AGG | - | chr2.3:3523024-3523043 | None:intergenic | 20.0% |
| !!! | AATGACTTATGCTTTAAATA+GGG | + | chr2.3:3524536-3524555 | MS.gene50035:intron | 20.0% |
| !!! | CTGTTTCTTAATTGATATTT+TGG | + | chr2.3:3524807-3524826 | MS.gene50035:intron | 20.0% |
| !!! | CTTTTGATGAATTTTATTTC+AGG | + | chr2.3:3525682-3525701 | MS.gene50035:intron | 20.0% |
| !!! | GAAATTTTTGTTATCTACAT+AGG | + | chr2.3:3526509-3526528 | MS.gene50035:intron | 20.0% |
| !!! | TAATGACTTATGCTTTAAAT+AGG | + | chr2.3:3524535-3524554 | MS.gene50035:intron | 20.0% |
| !!! | TATATATTTTCCAAACTTTG+TGG | + | chr2.3:3523584-3523603 | MS.gene50035:intron | 20.0% |
| !!! | TCCTATTTGTTATTTTCAAT+TGG | + | chr2.3:3523431-3523450 | MS.gene50035:intron | 20.0% |
| !!! | TTTTTTCAACAACATATCAA+GGG | + | chr2.3:3523772-3523791 | MS.gene50035:intron | 20.0% |
| !!! | TTTTTTTCAACAACATATCA+AGG | + | chr2.3:3523771-3523790 | MS.gene50035:intron | 20.0% |
| ! | AAAAAAAGCAAACATACTTC+TGG | + | chr2.3:3525536-3525555 | MS.gene50035:intron | 25.0% |
| ! | AAATAACAAATAGGATGCAA+AGG | - | chr2.3:3523426-3523445 | None:intergenic | 25.0% |
| ! | AAATAAGAAGATCTTTGAGT+TGG | + | chr2.3:3523470-3523489 | MS.gene50035:intron | 25.0% |
| ! | AAGTTTACAAAGAAGAGAAA+TGG | - | chr2.3:3524653-3524672 | None:intergenic | 25.0% |
| ! | AATAACAAATAGGATGCAAA+GGG | - | chr2.3:3523425-3523444 | None:intergenic | 25.0% |
| ! | ACACTATTTAATATCACAAG+AGG | - | chr2.3:3526538-3526557 | None:intergenic | 25.0% |
| ! | ACTGAAATAAGAAATACAAC+TGG | + | chr2.3:3526477-3526496 | MS.gene50035:intron | 25.0% |
| ! | AGTTTACAAAGAAGAGAAAT+GGG | - | chr2.3:3524652-3524671 | None:intergenic | 25.0% |
| ! | ATATCAAGGGAAAAATTGAT+AGG | + | chr2.3:3523785-3523804 | MS.gene50035:intron | 25.0% |
| ! | ATATGAAGATTTATCCTTGT+TGG | + | chr2.3:3525145-3525164 | MS.gene50035:intron | 25.0% |
| ! | ATCATGAGATAAACTCTATA+GGG | - | chr2.3:3525213-3525232 | None:intergenic | 25.0% |
| ! | ATTAACAAAACTTCCTTAGA+TGG | + | chr2.3:3526742-3526761 | MS.gene50035:intron | 25.0% |
| ! | ATTAATTCCTCCAAATTCAA+AGG | - | chr2.3:3526318-3526337 | None:intergenic | 25.0% |
| ! | ATTATTCCTATCAAACTATC+TGG | - | chr2.3:3526137-3526156 | None:intergenic | 25.0% |
| ! | ATTGTATTCTTCAATACTCA+AGG | - | chr2.3:3524113-3524132 | None:intergenic | 25.0% |
| ! | CATAAATCATGATTTACTTC+TGG | - | chr2.3:3524510-3524529 | None:intergenic | 25.0% |
| ! | CATGTAATGTAATACAAGTT+GGG | - | chr2.3:3526600-3526619 | None:intergenic | 25.0% |
| ! | GAAATTGCAAAATAATCATG+TGG | - | chr2.3:3526056-3526075 | None:intergenic | 25.0% |
| ! | GATACACATTGTAATTAGAT+TGG | - | chr2.3:3524929-3524948 | None:intergenic | 25.0% |
| ! | GCCAATTGAAAATAACAAAT+AGG | - | chr2.3:3523435-3523454 | None:intergenic | 25.0% |
| ! | GGAAAAACTAATGTTAGAAT+TGG | + | chr2.3:3526269-3526288 | MS.gene50035:CDS | 25.0% |
| ! | GGACTATTACTTTAAATTGT+AGG | + | chr2.3:3523550-3523569 | MS.gene50035:intron | 25.0% |
| ! | GTTTATCTTCTTCATTATCA+TGG | + | chr2.3:3522637-3522656 | MS.gene50035:CDS | 25.0% |
| ! | TAATTATTCGTACCAAACAA+AGG | + | chr2.3:3523066-3523085 | MS.gene50035:intron | 25.0% |
| ! | TAGAGTTGAAGTATAAGATT+TGG | + | chr2.3:3523954-3523973 | MS.gene50035:intron | 25.0% |
| ! | TATGAAGATTTATCCTTGTT+GGG | + | chr2.3:3525146-3525165 | MS.gene50035:intron | 25.0% |
| ! | TCTTAATTTCTATGACGATT+GGG | + | chr2.3:3523336-3523355 | MS.gene50035:intron | 25.0% |
| ! | TGTGATATTAAATAGTGTTC+TGG | + | chr2.3:3526540-3526559 | MS.gene50035:intron | 25.0% |
| ! | TTGTATTACATTACATGGTA+GGG | + | chr2.3:3526603-3526622 | MS.gene50035:intron | 25.0% |
| ! | TTGTATTCTTCAATACTCAA+GGG | - | chr2.3:3524112-3524131 | None:intergenic | 25.0% |
| ! | TTTCAATTTGGATGAAGAAA+AGG | - | chr2.3:3522670-3522689 | None:intergenic | 25.0% |
| !! | AACACTTTTCAGATCATAAA+AGG | - | chr2.3:3526176-3526195 | None:intergenic | 25.0% |
| !! | ATGACTTATGCTTTAAATAG+GGG | + | chr2.3:3524537-3524556 | MS.gene50035:intron | 25.0% |
| !!! | ACAAATTTTTGAGCTTATAG+CGG | - | chr2.3:3523925-3523944 | None:intergenic | 25.0% |
| !!! | ATCTGGTTTTCAATTACAAA+AGG | - | chr2.3:3526120-3526139 | None:intergenic | 25.0% |
| !!! | CTTAATTGATATTTTGGTCA+AGG | + | chr2.3:3524813-3524832 | MS.gene50035:intron | 25.0% |
| !!! | GTTAGAATATGTTACTTTCA+GGG | + | chr2.3:3525024-3525043 | MS.gene50035:intron | 25.0% |
| !!! | TCTTTAATTTTGCCTATAGT+GGG | - | chr2.3:3522864-3522883 | None:intergenic | 25.0% |
| !!! | TTCTTTAATTTTGCCTATAG+TGG | - | chr2.3:3522865-3522884 | None:intergenic | 25.0% |
| !!! | TTTTACTACTGGTTTCAATT+TGG | - | chr2.3:3522682-3522701 | None:intergenic | 25.0% |
| AAAACTTCCTTAGATGGAAT+GGG | + | chr2.3:3526748-3526767 | MS.gene50035:intron | 30.0% | |
| AACTTCCTAAATCCCAATTA+GGG | - | chr2.3:3524379-3524398 | None:intergenic | 30.0% | |
| AAGGAAAACAAAGCTAAATG+TGG | + | chr2.3:3523528-3523547 | MS.gene50035:intron | 30.0% | |
| AGGAAAACAAAGCTAAATGT+GGG | + | chr2.3:3523529-3523548 | MS.gene50035:intron | 30.0% | |
| ATCCTGCAAACAAACAAAAA+AGG | - | chr2.3:3524954-3524973 | None:intergenic | 30.0% | |
| ATTCTAGTGCTAGTTCAATA+GGG | + | chr2.3:3525586-3525605 | MS.gene50035:intron | 30.0% | |
| ATTTCTTATCAGATCAAGAG+AGG | + | chr2.3:3525002-3525021 | MS.gene50035:CDS | 30.0% | |
| CAAGCAAAACTAAGACAAAA+AGG | + | chr2.3:3525736-3525755 | MS.gene50035:CDS | 30.0% | |
| CCAACTTGTATTACATTACA+TGG | + | chr2.3:3526598-3526617 | MS.gene50035:intron | 30.0% | |
| CCATGTAATGTAATACAAGT+TGG | - | chr2.3:3526601-3526620 | None:intergenic | 30.0% | |
| CTTACGAATTCAAAATCTTC+TGG | - | chr2.3:3523172-3523191 | None:intergenic | 30.0% | |
| CTTGTATTACATTACATGGT+AGG | + | chr2.3:3526602-3526621 | MS.gene50035:intron | 30.0% | |
| GATCATGAGATAAACTCTAT+AGG | - | chr2.3:3525214-3525233 | None:intergenic | 30.0% | |
| GATCGAAACTTACTCTAATA+CGG | + | chr2.3:3526420-3526439 | MS.gene50035:intron | 30.0% | |
| GTCTTAATTTCTATGACGAT+TGG | + | chr2.3:3523335-3523354 | MS.gene50035:intron | 30.0% | |
| TAAATTTACATGCGGAAAGA+CGG | + | chr2.3:3524204-3524223 | MS.gene50035:intron | 30.0% | |
| TAACTTCCTAAATCCCAATT+AGG | - | chr2.3:3524380-3524399 | None:intergenic | 30.0% | |
| TAGTAAGTTCCTTCAAACTT+CGG | + | chr2.3:3525805-3525824 | MS.gene50035:intron | 30.0% | |
| TATTCTAGTGCTAGTTCAAT+AGG | + | chr2.3:3525585-3525604 | MS.gene50035:intron | 30.0% | |
| TGAAAACCAGATAGTTTGAT+AGG | + | chr2.3:3526128-3526147 | MS.gene50035:intron | 30.0% | |
| TGCTTATTGAATTTCTCTTG+TGG | - | chr2.3:3524582-3524601 | None:intergenic | 30.0% | |
| TTCTCTTCTTTGTAAACTTC+AGG | + | chr2.3:3524654-3524673 | MS.gene50035:intron | 30.0% | |
| ! | CAGAAGATTTTGAATTCGTA+AGG | + | chr2.3:3523170-3523189 | MS.gene50035:intron | 30.0% |
| ! | CGGAAATGTAATTTTCCTTA+CGG | - | chr2.3:3522815-3522834 | None:intergenic | 30.0% |
| ! | GCTTTTGCAAATACAAACTT+AGG | - | chr2.3:3524687-3524706 | None:intergenic | 30.0% |
| ! | GGAAATGTAATTTTCCTTAC+GGG | - | chr2.3:3522814-3522833 | None:intergenic | 30.0% |
| ! | TATTGGTGATTGCATTTATG+AGG | + | chr2.3:3522995-3523014 | MS.gene50035:CDS | 30.0% |
| !! | ATGTTCTGAAATCTGTGTTA+AGG | + | chr2.3:3525332-3525351 | MS.gene50035:intron | 30.0% |
| !! | GGTTAGAATATGTTACTTTC+AGG | + | chr2.3:3525023-3525042 | MS.gene50035:intron | 30.0% |
| !!! | AATTGATATTTTGGTCAAGG+AGG | + | chr2.3:3524816-3524835 | MS.gene50035:intron | 30.0% |
| AAACAAGAAGCAGCAGAAAA+TGG | - | chr2.3:3524778-3524797 | None:intergenic | 35.0% | |
| AAATTTACATGCGGAAAGAC+GGG | + | chr2.3:3524205-3524224 | MS.gene50035:intron | 35.0% | |
| AACCAGTAGTAAAAGCTTCA+TGG | + | chr2.3:3522688-3522707 | MS.gene50035:CDS | 35.0% | |
| ACAAAATTGCAGTGAGCTAT+TGG | + | chr2.3:3523303-3523322 | MS.gene50035:intron | 35.0% | |
| ACACTCAGCATGATAAAAGT+TGG | + | chr2.3:3525618-3525637 | MS.gene50035:intron | 35.0% | |
| ACCAGTAGTAAAAGCTTCAT+GGG | + | chr2.3:3522689-3522708 | MS.gene50035:CDS | 35.0% | |
| ACTATCTACGACAACAATTG+AGG | - | chr2.3:3523496-3523515 | None:intergenic | 35.0% | |
| AGAACACGATGAAACCTATT+TGG | + | chr2.3:3522896-3522915 | MS.gene50035:CDS | 35.0% | |
| AGATTTCAGAACATCACACT+AGG | - | chr2.3:3525326-3525345 | None:intergenic | 35.0% | |
| ATAAAGTAGAGGAACCCTAT+TGG | + | chr2.3:3523251-3523270 | MS.gene50035:intron | 35.0% | |
| CAAAACTTCCTTAGATGGAA+TGG | + | chr2.3:3526747-3526766 | MS.gene50035:intron | 35.0% | |
| CAACCTAGTTCAATAGACAT+TGG | - | chr2.3:3526218-3526237 | None:intergenic | 35.0% | |
| CAATGTCTATTGAACTAGGT+TGG | + | chr2.3:3526216-3526235 | MS.gene50035:intron | 35.0% | |
| CCATCTATCATATCCCAAAT+AGG | - | chr2.3:3522913-3522932 | None:intergenic | 35.0% | |
| CTCTAATACGGCTGAAAAAT+AGG | + | chr2.3:3526432-3526451 | MS.gene50035:intron | 35.0% | |
| CTGTCTAGAAGTTGAAAGAA+AGG | - | chr2.3:3526815-3526834 | None:intergenic | 35.0% | |
| GAAAACTCTACCACAAAGTT+TGG | - | chr2.3:3523597-3523616 | None:intergenic | 35.0% | |
| GAAATACAACTGGAGTGTAT+CGG | + | chr2.3:3526487-3526506 | MS.gene50035:intron | 35.0% | |
| GAACACGATGAAACCTATTT+GGG | + | chr2.3:3522897-3522916 | MS.gene50035:CDS | 35.0% | |
| GCAATCACCAATATAAGCTA+AGG | - | chr2.3:3522988-3523007 | None:intergenic | 35.0% | |
| GTAGATAAGTTAACCGATAG+TGG | + | chr2.3:3523141-3523160 | MS.gene50035:intron | 35.0% | |
| TAGCAGAATTGTGGCATAAT+TGG | - | chr2.3:3525567-3525586 | None:intergenic | 35.0% | |
| TATCTCATGATCCTGAAAAC+AGG | + | chr2.3:3525222-3525241 | MS.gene50035:intron | 35.0% | |
| TATTCTTCAATACTCAAGGG+TGG | - | chr2.3:3524109-3524128 | None:intergenic | 35.0% | |
| TGTAATTCCCATTCCATCTA+AGG | - | chr2.3:3526758-3526777 | None:intergenic | 35.0% | |
| TTCTAGTGCTAGTTCAATAG+GGG | + | chr2.3:3525587-3525606 | MS.gene50035:intron | 35.0% | |
| TTTGACAAATGTGAATCGCT+TGG | + | chr2.3:3526248-3526267 | MS.gene50035:CDS | 35.0% | |
| ! | ATGGAAAATAGGCGTGTTTT+GGG | - | chr2.3:3525068-3525087 | None:intergenic | 35.0% |
| ! | ATTTTCATCTGTCTCATGGT+TGG | + | chr2.3:3525469-3525488 | MS.gene50035:intron | 35.0% |
| ! | CAGCAGAAAATGGTGATTTT+GGG | - | chr2.3:3524768-3524787 | None:intergenic | 35.0% |
| ! | CCTATTTGGGATATGATAGA+TGG | + | chr2.3:3522910-3522929 | MS.gene50035:CDS | 35.0% |
| ! | GACTTTTGTGTAGAAATGTC+CGG | + | chr2.3:3525392-3525411 | MS.gene50035:intron | 35.0% |
| ! | TAATTTTCCTTACGGGTAGA+AGG | - | chr2.3:3522807-3522826 | None:intergenic | 35.0% |
| ! | TATGGAAAATAGGCGTGTTT+TGG | - | chr2.3:3525069-3525088 | None:intergenic | 35.0% |
| ! | TGAGATTTTCATCTGTCTCA+TGG | + | chr2.3:3525465-3525484 | MS.gene50035:intron | 35.0% |
| !!! | GTCCTTTTTTGTTTGTTTGC+AGG | + | chr2.3:3524949-3524968 | MS.gene50035:intron | 35.0% |
| !!! | TTTCTTATTTTCGCCCAACA+AGG | - | chr2.3:3525162-3525181 | None:intergenic | 35.0% |
| ACCAAACAAAGGTTCTGTTG+CGG | + | chr2.3:3523077-3523096 | MS.gene50035:intron | 40.0% | |
| ACGCCAATGTCTATTGAACT+AGG | + | chr2.3:3526212-3526231 | MS.gene50035:intron | 40.0% | |
| AGAACATCACACTAGGTTTC+AGG | - | chr2.3:3525319-3525338 | None:intergenic | 40.0% | |
| AGAATACAATGACCGTGTGA+TGG | + | chr2.3:3524123-3524142 | MS.gene50035:CDS | 40.0% | |
| AGACATTGGCGTTAGAAAAC+AGG | - | chr2.3:3526204-3526223 | None:intergenic | 40.0% | |
| AGACTCATGTCACCCTAATT+GGG | + | chr2.3:3524364-3524383 | MS.gene50035:intron | 40.0% | |
| AGGGGAAAAAGACATCATTC+AGG | + | chr2.3:3524555-3524574 | MS.gene50035:intron | 40.0% | |
| AGTTTCGATCAAAGTTCGAC+TGG | - | chr2.3:3526410-3526429 | None:intergenic | 40.0% | |
| ATTTCAGGGATGTTCTTCGA+TGG | + | chr2.3:3525697-3525716 | MS.gene50035:intron | 40.0% | |
| CATGATCCTGAAAACAGGAT+TGG | + | chr2.3:3525227-3525246 | MS.gene50035:intron | 40.0% | |
| CTCGTCAATGCCTTTGAATT+TGG | + | chr2.3:3526305-3526324 | MS.gene50035:CDS | 40.0% | |
| GAACGAGGTTTAACGACTTT+AGG | - | chr2.3:3522948-3522967 | None:intergenic | 40.0% | |
| GAATACTCAGTAGTCAGTTC+TGG | + | chr2.3:3526695-3526714 | MS.gene50035:intron | 40.0% | |
| GATGAGAAACCGAAGTTTGA+AGG | - | chr2.3:3525817-3525836 | None:intergenic | 40.0% | |
| GCACTAGAATAGCAGAATTG+TGG | - | chr2.3:3525576-3525595 | None:intergenic | 40.0% | |
| GCAGCATTAAAAACAGAACG+AGG | - | chr2.3:3522963-3522982 | None:intergenic | 40.0% | |
| GCTGCTACCTTAGCTTATAT+TGG | + | chr2.3:3522978-3522997 | MS.gene50035:CDS | 40.0% | |
| GGGGAAAAAGACATCATTCA+GGG | + | chr2.3:3524556-3524575 | MS.gene50035:intron | 40.0% | |
| GTCAATGCCTTTGAATTTGG+AGG | + | chr2.3:3526308-3526327 | MS.gene50035:CDS | 40.0% | |
| GTTGCACAGTTAGCCATTAA+CGG | + | chr2.3:3526023-3526042 | MS.gene50035:intron | 40.0% | |
| GTTTCGATCAAAGTTCGACT+GGG | - | chr2.3:3526409-3526428 | None:intergenic | 40.0% | |
| TAGACGAAACCAATAAGCAG+CGG | + | chr2.3:3525506-3525525 | MS.gene50035:intron | 40.0% | |
| TAGTTTCTCTCACCTTGGTT+GGG | + | chr2.3:3523634-3523653 | MS.gene50035:intron | 40.0% | |
| TGTCACCCTAATTGGGATTT+AGG | + | chr2.3:3524371-3524390 | MS.gene50035:intron | 40.0% | |
| TTAACGACTTTAGGTGGAGT+TGG | - | chr2.3:3522939-3522958 | None:intergenic | 40.0% | |
| TTCAAAACTCCGCTGCTTAT+TGG | - | chr2.3:3525518-3525537 | None:intergenic | 40.0% | |
| TTTCAGGGATGTTCTTCGAT+GGG | + | chr2.3:3525698-3525717 | MS.gene50035:intron | 40.0% | |
| ! | AATGTGAGTTTGACTTCAGC+CGG | + | chr2.3:3524845-3524864 | MS.gene50035:intron | 40.0% |
| ! | AGAACACCAATCCTGTTTTC+AGG | - | chr2.3:3525236-3525255 | None:intergenic | 40.0% |
| ! | AGAGAAGGAGATTGTGGTTT+TGG | - | chr2.3:3522771-3522790 | None:intergenic | 40.0% |
| ! | GCAGCAGAAAATGGTGATTT+TGG | - | chr2.3:3524769-3524788 | None:intergenic | 40.0% |
| ! | TCCCATGAAGCTTTTACTAC+TGG | - | chr2.3:3522693-3522712 | None:intergenic | 40.0% |
| ! | TGGAAAATAGGCGTGTTTTG+GGG | - | chr2.3:3525067-3525086 | None:intergenic | 40.0% |
| !! | ATTTTGCCTATAGTGGGAAG+TGG | - | chr2.3:3522858-3522877 | None:intergenic | 40.0% |
| !! | GGTGTTCTGAAATCTGTGTT+GGG | + | chr2.3:3525248-3525267 | MS.gene50035:intron | 40.0% |
| !! | GTGTTCTGAAATCTGTGTTG+GGG | + | chr2.3:3525249-3525268 | MS.gene50035:intron | 40.0% |
| !! | TCTTCTGGCTTATCCACTAT+CGG | - | chr2.3:3523157-3523176 | None:intergenic | 40.0% |
| !! | TGGTGTTCTGAAATCTGTGT+TGG | + | chr2.3:3525247-3525266 | MS.gene50035:intron | 40.0% |
| !! | TTGTTACTCTCTGAGACTTC+AGG | + | chr2.3:3523384-3523403 | MS.gene50035:intron | 40.0% |
| ACATGCAGCTATATGCTCGT+AGG | + | chr2.3:3524071-3524090 | MS.gene50035:intron | 45.0% | |
| AGGGTGACATGAGTCTGAAA+TGG | - | chr2.3:3524360-3524379 | None:intergenic | 45.0% | |
| AGTGTTCTGGTAGTACAAGC+TGG | + | chr2.3:3526553-3526572 | MS.gene50035:intron | 45.0% | |
| AGTTTCTCTCACCTTGGTTG+GGG | + | chr2.3:3523635-3523654 | MS.gene50035:intron | 45.0% | |
| ATATGTTTCCACCCCAACCA+AGG | - | chr2.3:3523649-3523668 | None:intergenic | 45.0% | |
| CAATAGAAAGCTGCAGTGCT+GGG | - | chr2.3:3526362-3526381 | None:intergenic | 45.0% | |
| CAGACTCATGTCACCCTAAT+TGG | + | chr2.3:3524363-3524382 | MS.gene50035:intron | 45.0% | |
| CCAAGGTGAGAGAAACTACA+CGG | - | chr2.3:3523632-3523651 | None:intergenic | 45.0% | |
| CGAGGTTTAACGACTTTAGG+TGG | - | chr2.3:3522945-3522964 | None:intergenic | 45.0% | |
| GAAGTGAGAGAAGGAGATTG+TGG | - | chr2.3:3522777-3522796 | None:intergenic | 45.0% | |
| GCGACTTAAACTACCAGTTC+CGG | - | chr2.3:3525414-3525433 | None:intergenic | 45.0% | |
| GGTTGGGGTGGAAACATATA+TGG | + | chr2.3:3523650-3523669 | MS.gene50035:intron | 45.0% | |
| GTAGTTTCTCTCACCTTGGT+TGG | + | chr2.3:3523633-3523652 | MS.gene50035:intron | 45.0% | |
| GTCTGGATGTACTGCCAATA+GGG | - | chr2.3:3523268-3523287 | None:intergenic | 45.0% | |
| GTGCATGCTGCAAAAATGTC+TGG | - | chr2.3:3523285-3523304 | None:intergenic | 45.0% | |
| GTGTTCTGGTAGTACAAGCT+GGG | + | chr2.3:3526554-3526573 | MS.gene50035:intron | 45.0% | |
| TAGACAGATGAGCTGAACAG+TGG | + | chr2.3:3526828-3526847 | MS.gene50035:intron | 45.0% | |
| TATAGGGAGCAGTTCAAGAG+AGG | - | chr2.3:3525197-3525216 | None:intergenic | 45.0% | |
| TCAATAGAAAGCTGCAGTGC+TGG | - | chr2.3:3526363-3526382 | None:intergenic | 45.0% | |
| TCCAACAGGAAATCACTAGC+CGG | - | chr2.3:3524867-3524886 | None:intergenic | 45.0% | |
| TCCGCAACAGAACCTTTGTT+TGG | - | chr2.3:3523081-3523100 | None:intergenic | 45.0% | |
| TGTCTGGATGTACTGCCAAT+AGG | - | chr2.3:3523269-3523288 | None:intergenic | 45.0% | |
| TGTGTAGAAATGTCCGGAAC+TGG | + | chr2.3:3525398-3525417 | MS.gene50035:intron | 45.0% | |
| TTCAGGGATGTTCTTCGATG+GGG | + | chr2.3:3525699-3525718 | MS.gene50035:intron | 45.0% | |
| ! | ACTAAGACAAAAAGGCGTGC+TGG | + | chr2.3:3525744-3525763 | MS.gene50035:CDS | 45.0% |
| ! | GGGTGACATGAGTCTGAAAT+GGG | - | chr2.3:3524359-3524378 | None:intergenic | 45.0% |
| ! | GGTGGTTGAGTGAGTTTTCT+AGG | - | chr2.3:3522750-3522769 | None:intergenic | 45.0% |
| !! | ACAAGTTGGGAGTATCTGTC+TGG | - | chr2.3:3526587-3526606 | None:intergenic | 45.0% |
| !! | GGAAAATAGGCGTGTTTTGG+GGG | - | chr2.3:3525066-3525085 | None:intergenic | 45.0% |
| !! | TAGGAGCGTTGCGGTTATAA+GGG | - | chr2.3:3522731-3522750 | None:intergenic | 45.0% |
| !!! | GAAGGAGATTGTGGTTTTGG+TGG | - | chr2.3:3522768-3522787 | None:intergenic | 45.0% |
| !!! | TGAGTTTTCTAGGAGCGTTG+CGG | - | chr2.3:3522740-3522759 | None:intergenic | 45.0% |
| !!! | TGTCGCTTTTCGTGTGTTTG+AGG | - | chr2.3:3523817-3523836 | None:intergenic | 45.0% |
| AGCGAACAACTGCCATCACA+CGG | - | chr2.3:3524138-3524157 | None:intergenic | 50.0% | |
| AGTGGCGCGTTTGAGAAGAT+CGG | - | chr2.3:3522835-3522854 | None:intergenic | 50.0% | |
| CACAGTTAGCCATTAACGGC+TGG | + | chr2.3:3526027-3526046 | MS.gene50035:intron | 50.0% | |
| CCGTGTAGTTTCTCTCACCT+TGG | + | chr2.3:3523629-3523648 | MS.gene50035:intron | 50.0% | |
| !! | CTAGGAGCGTTGCGGTTATA+AGG | - | chr2.3:3522732-3522751 | None:intergenic | 50.0% |
| !!! | AAATAGGCGTGTTTTGGGGG+AGG | - | chr2.3:3525063-3525082 | None:intergenic | 50.0% |
| ACCAGCACCTTCTACCCGTA+AGG | + | chr2.3:3522797-3522816 | MS.gene50035:intron | 55.0% | |
| ATGTGGCAGCCAGCCGTTAA+TGG | - | chr2.3:3526039-3526058 | None:intergenic | 55.0% | |
| GATGGCAGTTGTTCGCTGTG+AGG | + | chr2.3:3524141-3524160 | MS.gene50035:CDS | 55.0% | |
| GCCACTCCACTTCCCACTAT+AGG | + | chr2.3:3522849-3522868 | MS.gene50035:intron | 55.0% | |
| GCCGGCTAGTGATTTCCTGT+TGG | + | chr2.3:3524863-3524882 | MS.gene50035:intron | 55.0% | |
| TTCTCTCACCTTGGTTGGGG+TGG | + | chr2.3:3523638-3523657 | MS.gene50035:intron | 55.0% | |
| ! | GCCTATAGTGGGAAGTGGAG+TGG | - | chr2.3:3522853-3522872 | None:intergenic | 55.0% |
| ! | TCCTTACGGGTAGAAGGTGC+TGG | - | chr2.3:3522801-3522820 | None:intergenic | 55.0% |
| !! | GGTGCTGGTGAAGTGAGAGA+AGG | - | chr2.3:3522786-3522805 | None:intergenic | 55.0% |
| ! | AGAAAGCTGCAGTGCTGGGC+TGG | - | chr2.3:3526358-3526377 | None:intergenic | 60.0% |
| !!! | AGGCGTGTTTTGGGGGAGGA+GGG | - | chr2.3:3525059-3525078 | None:intergenic | 60.0% |
| !!! | TAGGCGTGTTTTGGGGGAGG+AGG | - | chr2.3:3525060-3525079 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 3522630 | 3526854 | 3522630 | ID=MS.gene50035 |
| chr2.3 | mRNA | 3522630 | 3526854 | 3522630 | ID=MS.gene50035.t1;Parent=MS.gene50035 |
| chr2.3 | exon | 3522630 | 3522813 | 3522630 | ID=MS.gene50035.t1.exon1;Parent=MS.gene50035.t1 |
| chr2.3 | CDS | 3522630 | 3522813 | 3522630 | ID=cds.MS.gene50035.t1;Parent=MS.gene50035.t1 |
| chr2.3 | exon | 3522871 | 3523016 | 3522871 | ID=MS.gene50035.t1.exon2;Parent=MS.gene50035.t1 |
| chr2.3 | CDS | 3522871 | 3523016 | 3522871 | ID=cds.MS.gene50035.t1;Parent=MS.gene50035.t1 |
| chr2.3 | exon | 3524079 | 3524168 | 3524079 | ID=MS.gene50035.t1.exon3;Parent=MS.gene50035.t1 |
| chr2.3 | CDS | 3524079 | 3524168 | 3524079 | ID=cds.MS.gene50035.t1;Parent=MS.gene50035.t1 |
| chr2.3 | exon | 3524971 | 3525023 | 3524971 | ID=MS.gene50035.t1.exon4;Parent=MS.gene50035.t1 |
| chr2.3 | CDS | 3524971 | 3525023 | 3524971 | ID=cds.MS.gene50035.t1;Parent=MS.gene50035.t1 |
| chr2.3 | exon | 3525704 | 3525806 | 3525704 | ID=MS.gene50035.t1.exon5;Parent=MS.gene50035.t1 |
| chr2.3 | CDS | 3525704 | 3525806 | 3525704 | ID=cds.MS.gene50035.t1;Parent=MS.gene50035.t1 |
| chr2.3 | exon | 3526234 | 3526338 | 3526234 | ID=MS.gene50035.t1.exon6;Parent=MS.gene50035.t1 |
| chr2.3 | CDS | 3526234 | 3526338 | 3526234 | ID=cds.MS.gene50035.t1;Parent=MS.gene50035.t1 |
| chr2.3 | exon | 3526831 | 3526854 | 3526831 | ID=MS.gene50035.t1.exon7;Parent=MS.gene50035.t1 |
| chr2.3 | CDS | 3526831 | 3526854 | 3526831 | ID=cds.MS.gene50035.t1;Parent=MS.gene50035.t1 |
| Gene Sequence |
| Protein sequence |
